HHsearch alignment for GI: 254781049 and conserved domain: cd06293

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.21  E-value=1.2  Score=23.95  Aligned_cols=103  Identities=14%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf             99999965899624884278889899999999986-19986589996358613289999999999997299987999748
Q gi|254781049|r  282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE  360 (398)
Q Consensus       282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~  360 (398)
T Consensus       138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~-------~~nD~~A~g~l~~l~~~gi~vP~disii  210 (269)
T cd06293         138 YREALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIF-------AASDEIAIGLLEVLRERGLSIPGDMSLV  210 (269)
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf             999999769999934899556311359999999984799985899-------6885999999999998499999965999


Q ss_pred             CCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHH
Q ss_conf             9858999999997699589-949989999999998
Q gi|254781049|r  361 GANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHA  394 (398)
Q Consensus       361 Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~  394 (398)
T Consensus       211 gfd~~---~~~~~~~P~lTti~q~~~~ig~~A~~~  242 (269)
T cd06293         211 GFDDV---GPAHLFAPPLTTIRQPVRELGRRAVAL  242 (269)
T ss_pred             EECCH---HHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf             88880---999830898489965999999999999