HHsearch alignment for GI: 254781049 and conserved domain: cd06293
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.21 E-value=1.2 Score=23.95 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 99999965899624884278889899999999986-19986589996358613289999999999997299987999748
Q gi|254781049|r 282 TMDIIKLYGGAPANFLDVGGGADQDKVAAAFKIIT-SDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 (398)
Q Consensus 282 tmD~i~~~Gg~pANFlD~gG~a~~e~~~~a~~~il-~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~ 360 (398)
T Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~-------~~nD~~A~g~l~~l~~~gi~vP~disii 210 (269)
T cd06293 138 YREALAEAHIPEVPEYVCFGDYTREFGRAAAAQLLARGDPPTAIF-------AASDEIAIGLLEVLRERGLSIPGDMSLV 210 (269)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-------ECCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 999999769999934899556311359999999984799985899-------6885999999999998499999965999
Q ss_pred CCCHHHHHHHHHHCCCCEE-EECCHHHHHHHHHHH
Q ss_conf 9858999999997699589-949989999999998
Q gi|254781049|r 361 GANVDIGNRLIAESGLNVI-TAIDLDDAAQKIVHA 394 (398)
Q Consensus 361 Gtn~~~g~~il~~~g~~~~-~~~~~~~A~~~~v~~ 394 (398)
T Consensus 211 gfd~~---~~~~~~~P~lTti~q~~~~ig~~A~~~ 242 (269)
T cd06293 211 GFDDV---GPAHLFAPPLTTIRQPVRELGRRAVAL 242 (269)
T ss_pred EECCH---HHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 88880---999830898489965999999999999