HHsearch alignment for GI: 254781049 and conserved domain: cd06310

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.49  E-value=0.87  Score=24.87  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             CCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHCCCCE
Q ss_conf             8889899999999-98619986589996358613289999999999997299987-999748985899999999769958
Q gi|254781049|r  301 GGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP-LVMRLEGANVDIGNRLIAESGLNV  378 (398)
Q Consensus       301 G~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p-ivvRl~Gtn~~~g~~il~~~g~~~  378 (398)
T Consensus       163 ~~~~~~~~~~~~~~~L~~~pdi~ai~~-------~nd~~a~ga~~al~~~g~~~~i~vvg~D~~--~~~~~~i~~G~i~~  233 (273)
T cd06310         163 SDSDYAKALDITEDLLTANPDLKGIFG-------ANEGSAVGAARAVRQAGKAGKVKVVGFDAS--PEQIDALREGVIQA  233 (273)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCC--HHHHHHHHCCCCEE
T ss_conf             652489999999999975898757984-------384899999999997799999399998986--99999998599859


Q ss_pred             EEECCHHHHHHHHHHH
Q ss_conf             9949989999999998
Q gi|254781049|r  379 ITAIDLDDAAQKIVHA  394 (398)
Q Consensus       379 ~~~~~~~~A~~~~v~~  394 (398)
T Consensus       234 tv~q~p~~~G~~av~~  249 (273)
T cd06310         234 LVVQNPYKMGYLGVKT  249 (273)
T ss_pred             EECCCHHHHHHHHHHH
T ss_conf             9818999999999999