HHsearch alignment for GI: 254781049 and conserved domain: cd06310
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.49 E-value=0.87 Score=24.87 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHCCCCE
Q ss_conf 8889899999999-98619986589996358613289999999999997299987-999748985899999999769958
Q gi|254781049|r 301 GGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP-LVMRLEGANVDIGNRLIAESGLNV 378 (398)
Q Consensus 301 G~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p-ivvRl~Gtn~~~g~~il~~~g~~~ 378 (398)
T Consensus 163 ~~~~~~~~~~~~~~~L~~~pdi~ai~~-------~nd~~a~ga~~al~~~g~~~~i~vvg~D~~--~~~~~~i~~G~i~~ 233 (273)
T cd06310 163 SDSDYAKALDITEDLLTANPDLKGIFG-------ANEGSAVGAARAVRQAGKAGKVKVVGFDAS--PEQIDALREGVIQA 233 (273)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCC--HHHHHHHHCCCCEE
T ss_conf 652489999999999975898757984-------384899999999997799999399998986--99999998599859
Q ss_pred EEECCHHHHHHHHHHH
Q ss_conf 9949989999999998
Q gi|254781049|r 379 ITAIDLDDAAQKIVHA 394 (398)
Q Consensus 379 ~~~~~~~~A~~~~v~~ 394 (398)
T Consensus 234 tv~q~p~~~G~~av~~ 249 (273)
T cd06310 234 LVVQNPYKMGYLGVKT 249 (273)
T ss_pred EECCCHHHHHHHHHHH
T ss_conf 9818999999999999