HHsearch alignment for GI: 254781049 and conserved domain: cd06313
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.57 E-value=0.61 Score=25.88 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEE
Q ss_conf 88898999999999-86199865899963586132899999999999972999879997489858999999997699589
Q gi|254781049|r 301 GGADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVI 379 (398)
Q Consensus 301 G~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~ 379 (398)
T Consensus 163 ~~~~~~~a~~~~~~~L~~~pdid~I~-------~~nD~~a~Ga~~Al~~aG~~~v~v~g~Dg~~~--~l~~I~~G~~~at 233 (272)
T cd06313 163 ANWDVSKAARIWETWLTKYPQLDGAF-------CHNDSMALAAYQIMKAAGRTKIVIGGVDGDPP--AIQAVSDGRMVAT 233 (272)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCEEEEECCCHH--HHHHHHCCCCEEE
T ss_conf 68768999999999996499987899-------88847789999999976999868999789999--9999985991899
Q ss_pred EECCHHHHHHHHHHHH
Q ss_conf 9499899999999985
Q gi|254781049|r 380 TAIDLDDAAQKIVHAV 395 (398)
Q Consensus 380 ~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 234 v~q~~~~~G~~av~~a 249 (272)
T cd06313 234 VRNPACRIHGGAIAAG 249 (272)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 8069999999999999