HHsearch alignment for GI: 254781049 and conserved domain: cd06313

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.57  E-value=0.61  Score=25.88  Aligned_cols=86  Identities=10%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHH-HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEE
Q ss_conf             88898999999999-86199865899963586132899999999999972999879997489858999999997699589
Q gi|254781049|r  301 GGADQDKVAAAFKI-ITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGLNVI  379 (398)
Q Consensus       301 G~a~~e~~~~a~~~-il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~~~~  379 (398)
T Consensus       163 ~~~~~~~a~~~~~~~L~~~pdid~I~-------~~nD~~a~Ga~~Al~~aG~~~v~v~g~Dg~~~--~l~~I~~G~~~at  233 (272)
T cd06313         163 ANWDVSKAARIWETWLTKYPQLDGAF-------CHNDSMALAAYQIMKAAGRTKIVIGGVDGDPP--AIQAVSDGRMVAT  233 (272)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEE-------ECCCHHHHHHHHHHHHCCCCCCEEEEECCCHH--HHHHHHCCCCEEE
T ss_conf             68768999999999996499987899-------88847789999999976999868999789999--9999985991899


Q ss_pred             EECCHHHHHHHHHHHH
Q ss_conf             9499899999999985
Q gi|254781049|r  380 TAIDLDDAAQKIVHAV  395 (398)
Q Consensus       380 ~~~~~~~A~~~~v~~~  395 (398)
T Consensus       234 v~q~~~~~G~~av~~a  249 (272)
T cd06313         234 VRNPACRIHGGAIAAG  249 (272)
T ss_pred             EECCHHHHHHHHHHHH
T ss_conf             8069999999999999