HHsearch alignment for GI: 254781049 and conserved domain: cd06319
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.74 E-value=0.36 Score=27.41 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=55.8
Q ss_pred CCCHHHHHH-HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHHHCCCCEE
Q ss_conf 889899999-9999861998658999635861328999999999999729998-79997489858999999997699589
Q gi|254781049|r 302 GADQDKVAA-AFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINI-PLVMRLEGANVDIGNRLIAESGLNVI 379 (398)
Q Consensus 302 ~a~~e~~~~-a~~~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~-pivvRl~Gtn~~~g~~il~~~g~~~~ 379 (398)
T Consensus 166 ~~~~~~~~~~~~~~L~~~p~i~ai~~-------~~d~~a~Ga~~a~~~~G~~~~i~vvg~D~~--~~~~~~i~~G~~~~t 236 (277)
T cd06319 166 DFSYQETFDYTNDLLTANPDIRAIWL-------QGSDRYQGALDAIATAGKTGKVLLICFDAE--PEFIELLKSGALVGA 236 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEECCCC--HHHHHHHHCCCCEEE
T ss_conf 99999999999999973899768996-------698899999999997599998589963797--999999875993699
Q ss_pred EECCHHHHHHHHHHHH
Q ss_conf 9499899999999985
Q gi|254781049|r 380 TAIDLDDAAQKIVHAV 395 (398)
Q Consensus 380 ~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 237 v~q~p~~~G~~av~~~ 252 (277)
T cd06319 237 GMQQPFLMGERAVETV 252 (277)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 9649999999999999