HHsearch alignment for GI: 254781049 and conserved domain: cd06320
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=91.65 E-value=1.1 Score=24.24 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 278889899999999-98619986589996358613289999999999997299987-9997489858999999997699
Q gi|254781049|r 299 VGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIP-LVMRLEGANVDIGNRLIAESGL 376 (398)
Q Consensus 299 ~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~p-ivvRl~Gtn~~~g~~il~~~g~ 376 (398)
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~~pd~~ai~~-------~nD~~A~Ga~~al~~~g~~~di~vvG~D~~--~~~~~~i~~g~~ 230 (275)
T cd06320 160 QPADWDREKAYDVATTILQRNPDLKAIYC-------NNDTMALGVVEAVKNAGKQGKVLVVGTDGI--PEAYKSIRAGEL 230 (275)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCC--HHHHHHHHCCCC
T ss_conf 15530389999999998862876677996-------698899999999997699998299998976--999999864996
Q ss_pred CEEEECCHHHHHHHHHHHH
Q ss_conf 5899499899999999985
Q gi|254781049|r 377 NVITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 377 ~~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 231 ~~tv~q~~~~~G~~av~~l 249 (275)
T cd06320 231 TATVDSFPALIGEVAMEVM 249 (275)
T ss_pred EEEECCCHHHHHHHHHHHH
T ss_conf 6998179999999999999