HHsearch alignment for GI: 254781049 and conserved domain: cd06321
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.23 E-value=0.46 Score=26.68 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=59.9
Q ss_pred ECCCCCCHHHHHHHHH-HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 4278889899999999-986199865899963586132899999999999972999879997489858999999997699
Q gi|254781049|r 298 DVGGGADQDKVAAAFK-IITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRLIAESGL 376 (398)
Q Consensus 298 D~gG~a~~e~~~~a~~-~il~~~~vk~iliNifGGI~~cd~vA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~il~~~g~ 376 (398)
T Consensus 158 ~~~~~~~~~~~~~~~~~ll~~~p~~~aifa-------~nD~~A~Ga~~a~~~~G~~~i~ivg~dg~~~~~-~~~~~~~~~ 229 (271)
T cd06321 158 DQNGKGSRDGGLRVMQGLLTRFPKLDGVFA-------INDPTAIGADLAAKQAGRNDIKITSVDGAPDAE-KAILSGNSL 229 (271)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCEEEE-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHH-HHHHCCCCC
T ss_conf 722887899999999999850886778997-------786899999999997597999899996967999-998669997
Q ss_pred C-EEEECCHHHHHHHHHHHH
Q ss_conf 5-899499899999999985
Q gi|254781049|r 377 N-VITAIDLDDAAQKIVHAV 395 (398)
Q Consensus 377 ~-~~~~~~~~~A~~~~v~~~ 395 (398)
T Consensus 230 ~~~tv~Q~~~~mG~~av~~l 249 (271)
T cd06321 230 IIATAAQDPRAMARKAVEIG 249 (271)
T ss_pred CEEEEECCHHHHHHHHHHHH
T ss_conf 27998489999999999999