HHsearch results for GI: 254781049 and protein with PDBid: 2fb9_A
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.47 E-value=2e-06 Score=60.57 Aligned_cols=164 Identities=18% Similarity=0.239 Sum_probs=96.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 79999999986898888157479999999998729986999712136876565655677777770799589999999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDIR 84 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a~ 84 (398)
=+.+|++|+++|||+|++....+.++ ...+++||+ |||+- . ||- .-||.++++.+|+.++.+
T Consensus 119 K~~~k~~l~~~gIptp~~~~~~~~~~---~~~~~~~P~-ivKP~-~-~gs------------S~Gv~~v~~~~el~~a~~ 180 (322)
T 2fb9_A 119 KDLSKRVLAQAGVPVVPWVAVRKGEP---PVVPFDPPF-FVKPA-N-TGS------------SVGISRVERFQDLEAALA 180 (322)
T ss_dssp HHHHHHHHHHTTCCCCCEEEEETTSC---CCCCSCSCE-EEEET-T-CCT------------TTTCEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHH---HHHCCCCCE-EEEEC-C-CCC------------CCCCEEECCHHHHHHHHH
T ss_conf 99999999983998533433222023---553258868-99726-8-887------------768668368999999987
Q ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEEC--CCCC-CHHHHHHHCHHHHEEEECCC
Q ss_conf 86187654421222224433011034555650589999983477804899844--7884-02455574831220332144
Q gi|254781049|r 85 EILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIAST--QGGM-DIEEVAKDYPQKIFKLLIDP 161 (398)
Q Consensus 85 ~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~--~GGv-dIE~va~~~p~~I~~~~id~ 161 (398)
..+... ..+++|+.+...+|+-+++..+.... .+.+... ..+. +-+ ++..+. ....+.|
T Consensus 181 ~~~~~~-------------~~~~~e~~i~~g~E~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~--~k~~~~--~~~~~~p 242 (322)
T 2fb9_A 181 LAFRYD-------------EKAVVEKALSPVRELEVGVLGNVFGE-ASPVGEVRYEAPFYDYE--TKYTPG--RAELLIP 242 (322)
T ss_dssp HHTTTC-------------SEEEEEECCSSCEEEEEEEESSSSCE-EEEEEEEEEECCEEETT--TEEECC--EEEEESS
T ss_pred HHHCCC-------------CCCCCHHEEECCEEEEEEEEECCCCC-EEEEEEECCCCCCCCHH--HEEECC--CCCCCCC
T ss_conf 530022-------------23342001312308999997234462-20135531345764241--168237--6311468
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 45789578887887519888998859999999989999559751023267990599679940
Q gi|254781049|r 162 LIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLD 223 (398)
Q Consensus 162 ~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlD 223 (398)
..++.+....+.++..++++.+--.+..-+| +.++ +|+++.++
T Consensus 243 ---------------~~~~~~~~~~i~~~a~k~~~~Lg~~g~~rvD---f~~~-~g~~yvlE 285 (322)
T 2fb9_A 243 ---------------APLDPGTQETVQELALKAYKVLGVRGMARVD---FFLA-EGELYLNE 285 (322)
T ss_dssp ---------------CCCCTTHHHHHHHHHHHHHHHHTCCSEEEEE---EEEE-TTEEEEEE
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE---EEEE-CCEEEEEE
T ss_conf ---------------7414667568999999999981996179999---9999-99899998