HHsearch results for GI: 254781049 and protein with PDBid: 2pvp_A

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=98.81  E-value=2e-08  Score=73.79  Aligned_cols=95  Identities=18%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHCCCCCCCCEEECCHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf             799999999868988881574799999999-9872998699971213687656565567777777079958999999999
Q gi|254781049|r    5 EYQAKALLRKYNVPVAKGVVISSVHAAESA-IKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI   83 (398)
Q Consensus         5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~-a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a   83 (398)
                      =+..|++|+++|||+|++.+.++.++.... ...++||+ |+|+--  ||-|            =||.++.|.+|+.++.
T Consensus       150 K~~~k~~l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~P~-vvKP~~--~gsS------------~GV~~v~~~~el~~ai  214 (367)
T 2pvp_A          150 KYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPF-IVKPSN--AGSS------------LGVNVVKEEKELIYAL  214 (367)
T ss_dssp             HHHHHHHHHHHTCBCCCCEEECTTTGGGHHHHCCSCSCE-EEEESS--CCTT------------TTCEEESSTTSHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-EEEECC--CCCC------------CCCEEEECCHHHHHHH
T ss_conf             599888898729995631134444478899987659988-999566--4578------------9878996133179999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC
Q ss_conf             98618765442122222443301103455565058999998347
Q gi|254781049|r   84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT  127 (398)
Q Consensus        84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~  127 (398)
                      ++.+...             +.+||||.++..+|+-+++..+..
T Consensus       215 ~~~~~~~-------------~~vlVEe~I~G~~E~~v~v~~~~~  245 (367)
T 2pvp_A          215 DSAFEYS-------------KEVLIEPFIQGVKEYNLAGCKIKK  245 (367)
T ss_dssp             HHHTTTC-------------SCEEEEECCTTCEEEEEEEEEETT
T ss_pred             HHHHHHC-------------CCEEEEEECCCCEEEEEEEECCCC
T ss_conf             9987614-------------413578862797874787742689