HHsearch results for GI: 254781049 and protein with PDBid: 2pvp_A
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=98.81 E-value=2e-08 Score=73.79 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 799999999868988881574799999999-9872998699971213687656565567777777079958999999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAAESA-IKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISDI 83 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea~~~-a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~a 83 (398)
=+..|++|+++|||+|++.+.++.++.... ...++||+ |+|+-- ||-| =||.++.|.+|+.++.
T Consensus 150 K~~~k~~l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~P~-vvKP~~--~gsS------------~GV~~v~~~~el~~ai 214 (367)
T 2pvp_A 150 KYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPF-IVKPSN--AGSS------------LGVNVVKEEKELIYAL 214 (367)
T ss_dssp HHHHHHHHHHHTCBCCCCEEECTTTGGGHHHHCCSCSCE-EEEESS--CCTT------------TTCEEESSTTSHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCE-EEEECC--CCCC------------CCCEEEECCHHHHHHH
T ss_conf 599888898729995631134444478899987659988-999566--4578------------9878996133179999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECC
Q ss_conf 98618765442122222443301103455565058999998347
Q gi|254781049|r 84 REILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRT 127 (398)
Q Consensus 84 ~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~ 127 (398)
++.+... +.+||||.++..+|+-+++..+..
T Consensus 215 ~~~~~~~-------------~~vlVEe~I~G~~E~~v~v~~~~~ 245 (367)
T 2pvp_A 215 DSAFEYS-------------KEVLIEPFIQGVKEYNLAGCKIKK 245 (367)
T ss_dssp HHHTTTC-------------SCEEEEECCTTCEEEEEEEEEETT
T ss_pred HHHHHHC-------------CCEEEEEECCCCEEEEEEEECCCC
T ss_conf 9987614-------------413578862797874787742689