HHsearch results for GI: 254781049 and protein with PDBid: 3k3p_A
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.53 E-value=2.9e-06 Score=59.49 Aligned_cols=171 Identities=13% Similarity=0.126 Sum_probs=98.1
Q ss_pred HHHHHHHHHH-CCCCCCCCEEECC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf 7999999998-6898888157479----9999999987299869997121368765656556777777707995899999
Q gi|254781049|r 5 EYQAKALLRK-YNVPVAKGVVISS----VHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSV 79 (398)
Q Consensus 5 EyqaK~lL~~-~GIpvp~g~~a~s----~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea 79 (398)
=+.+|++|+. .|+|+|++.+... .+.....+++++||+ |+|+- .||- .-||.++.+.+|+
T Consensus 162 K~~tK~il~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~lg~Pv-ivKP~--~gGs------------S~Gv~~V~~~~el 226 (383)
T 3k3p_A 162 KITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPV-FVKPA--NMGS------------SVGISKAENRTDL 226 (383)
T ss_dssp HHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCSSE-EEEEC--C------------------CEEESSHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECC--CCCC------------CCCCCCCCCHHHH
T ss_conf 9999999987168887642123433204678999999738988-99788--8677------------9897221489999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEEC
Q ss_conf 99999861876544212222244330110345556505899999834778048998447884024555748312203321
Q gi|254781049|r 80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLI 159 (398)
Q Consensus 80 ~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~i 159 (398)
..+....+.. -+.+|||+.++ .+|+-+++..++... ++... .-+.........
T Consensus 227 ~~a~~~a~~~-------------~~~vlvEefI~-g~E~tv~v~~~~~~~--~~~~~--e~i~~~~~~~~~--------- 279 (383)
T 3k3p_A 227 KQAIALALKY-------------DSRVLIEQGVD-AREIEVGILGNTDVK--TTLPG--EIVKDVAFYDYE--------- 279 (383)
T ss_dssp HHHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSSCE--ECCCE--EEC------------------
T ss_pred HHHHHHHHHH-------------HHHHHHHCEEC-CCCCEEEEEECCCCE--EEEEC--CCCCCCCCCCHH---------
T ss_conf 9999987644-------------37878515651-332178887247750--55200--100246653300---------
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE
Q ss_conf 44457895788878875198889988599999999899995597510232679905996799400
Q gi|254781049|r 160 DPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS 224 (398)
Q Consensus 160 d~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA 224 (398)
.-.............++.+..+++.++..++|+.+--.+..-+|+ .++++|+++.++.
T Consensus 280 ----~~~~~~~~~~~~pa~~~~~l~~~i~~~A~ka~~~Lg~~g~~RiDf---~ld~dg~~y~lEv 337 (383)
T 3k3p_A 280 ----AKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF---FLTEDGKVYLNEL 337 (383)
T ss_dssp ------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE---EECTTCCEEEEEE
T ss_pred ----EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEE
T ss_conf ----134168744457766579999999999999999849952798999---9938996899986