HHsearch results for GI: 254781049 and protein with PDBid: 3k3p_A

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.53  E-value=2.9e-06  Score=59.49  Aligned_cols=171  Identities=13%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             HHHHHHHHHH-CCCCCCCCEEECC----HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             7999999998-6898888157479----9999999987299869997121368765656556777777707995899999
Q gi|254781049|r    5 EYQAKALLRK-YNVPVAKGVVISS----VHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSV   79 (398)
Q Consensus         5 EyqaK~lL~~-~GIpvp~g~~a~s----~~ea~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea   79 (398)
                      =+.+|++|+. .|+|+|++.+...    .+.....+++++||+ |+|+-  .||-            .-||.++.+.+|+
T Consensus       162 K~~tK~il~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~lg~Pv-ivKP~--~gGs------------S~Gv~~V~~~~el  226 (383)
T 3k3p_A          162 KITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPV-FVKPA--NMGS------------SVGISKAENRTDL  226 (383)
T ss_dssp             HHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCSSE-EEEEC--C------------------CEEESSHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEECC--CCCC------------CCCCCCCCCHHHH
T ss_conf             9999999987168887642123433204678999999738988-99788--8677------------9897221489999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEEC
Q ss_conf             99999861876544212222244330110345556505899999834778048998447884024555748312203321
Q gi|254781049|r   80 ISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLI  159 (398)
Q Consensus        80 ~~~a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~i  159 (398)
                      ..+....+..             -+.+|||+.++ .+|+-+++..++...  ++...  .-+.........         
T Consensus       227 ~~a~~~a~~~-------------~~~vlvEefI~-g~E~tv~v~~~~~~~--~~~~~--e~i~~~~~~~~~---------  279 (383)
T 3k3p_A          227 KQAIALALKY-------------DSRVLIEQGVD-AREIEVGILGNTDVK--TTLPG--EIVKDVAFYDYE---------  279 (383)
T ss_dssp             HHHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSSCE--ECCCE--EEC------------------
T ss_pred             HHHHHHHHHH-------------HHHHHHHCEEC-CCCCEEEEEECCCCE--EEEEC--CCCCCCCCCCHH---------
T ss_conf             9999987644-------------37878515651-332178887247750--55200--100246653300---------


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEE
Q ss_conf             44457895788878875198889988599999999899995597510232679905996799400
Q gi|254781049|r  160 DPLIGVTSEDVASLCDMLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDS  224 (398)
Q Consensus       160 d~~~gl~~~~~~~l~~~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAlDA  224 (398)
                          .-.............++.+..+++.++..++|+.+--.+..-+|+   .++++|+++.++.
T Consensus       280 ----~~~~~~~~~~~~pa~~~~~l~~~i~~~A~ka~~~Lg~~g~~RiDf---~ld~dg~~y~lEv  337 (383)
T 3k3p_A          280 ----AKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDF---FLTEDGKVYLNEL  337 (383)
T ss_dssp             ------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE---EECTTCCEEEEEE
T ss_pred             ----EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE---EEECCCCEEEEEE
T ss_conf             ----134168744457766579999999999999999849952798999---9938996899986