HHsearch results for GI: 254781049 and protein with PDBid: 3lwb_A
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.67 E-value=4.5e-07 Score=64.85 Aligned_cols=170 Identities=19% Similarity=0.152 Sum_probs=100.0
Q ss_pred HHHHHHHHHHCCCCCCCCEEECCHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 799999999868988881574799999--999987299869997121368765656556777777707995899999999
Q gi|254781049|r 5 EYQAKALLRKYNVPVAKGVVISSVHAA--ESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSKGGVRVESSLKSVISD 82 (398)
Q Consensus 5 EyqaK~lL~~~GIpvp~g~~a~s~~ea--~~~a~~ig~p~~VvKaQV~aGgRGKa~~~~~hk~~~GGV~l~~s~~ea~~~ 82 (398)
=+.+|++|+++|||+|++.+..+.++. ....+.++||+ |||+- .. |- .=||.++++.+++.++
T Consensus 152 K~~tk~il~~~gIptp~~~~~~~~~~~~~~~~~~~l~~P~-vVKP~-~~-Gs------------S~GV~~v~~~~el~~~ 216 (373)
T 3lwb_A 152 KEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPV-FVKPA-RG-GS------------SIGVSRVSSWDQLPAA 216 (373)
T ss_dssp HHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCSCE-EEEES-BC-ST------------TTTCEEECSGGGHHHH
T ss_pred CHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCCCE-EEEEC-CC-CC------------CCCCEECCCHHHHHHH
T ss_conf 3989999997286755301001013579999988619988-99978-88-64------------1797630668888888
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCHHHHEEEECCCC
Q ss_conf 99861876544212222244330110345556505899999834778048998447884024555748312203321444
Q gi|254781049|r 83 IREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPL 162 (398)
Q Consensus 83 a~~ilg~~l~t~qt~~~G~~v~~vLVEe~v~~~~E~ylgi~~Dr~~~~~vii~S~~GGvdIE~va~~~p~~I~~~~id~~ 162 (398)
.+..+... +.++||+.++ .+|+.+++..++... + ..+..+-+... . .....
T Consensus 217 ~~~~~~~~-------------~~vlvE~~I~-g~E~~v~vi~~~~g~-~--~~~~~~ei~~~--~----------~~~~~ 267 (373)
T 3lwb_A 217 VARARRHD-------------PKVIVEAAIS-GRELECGVLEMPDGT-L--EASTLGEIRVA--G----------VRGRE 267 (373)
T ss_dssp HHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTTSC-E--EECCCEEEECC--S----------TTCSE
T ss_pred HHHHHCCC-------------CCCCCEEEEC-CCEEEEEEEECCCCC-C--CCCEEEEEEEC--C----------CCCCC
T ss_conf 88643037-------------5324225761-507999999615786-2--10101027713--3----------12554
Q ss_pred CCCCHHHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE
Q ss_conf 5789578887887------51988899885999999998999955975102326799059967994
Q gi|254781049|r 163 IGVTSEDVASLCD------MLELQGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVL 222 (398)
Q Consensus 163 ~gl~~~~~~~l~~------~lg~~~~~~~~~~~ii~~L~~~f~e~Da~liEINPLvvt~dg~vvAl 222 (398)
....+++...... -..++....+.+.++..+.|+++--.+..-++ +.++++| ++.+
T Consensus 268 ~~~~dy~~ky~~~~~~~~~pa~~~~~~~~~i~~~A~~a~~aLg~~g~~RvD---f~~~~~~-~yvl 329 (373)
T 3lwb_A 268 DSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVD---FFLTDDG-PVIN 329 (373)
T ss_dssp ESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEE---EEEETTE-EEEE
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE---EEEECCE-EEEE
T ss_conf 332443330035775346787678899999999999999996994089899---9999990-7999