RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase
subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
>gnl|CDD|30394 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 468 bits (1207), Expect = e-132
Identities = 212/399 (53%), Positives = 271/399 (67%), Gaps = 15/399 (3%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
MN+HEYQAK L KY +PV G V +S AE A K L G VVK+Q+HAGGRGK
Sbjct: 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKA--- 57
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADIL-RELY 119
GGV++ S + EILG QT G VN V VE+ DI+ +E Y
Sbjct: 58 -------GGVKLAKSPEEAKEAAEEILG---KNYQTDIKGEPVNKVLVEEAVDIIKKEYY 107
Query: 120 LSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLEL 179
LS+++DR+S +AST+GGMDIEEVA+ P+KI K+ +DPL G+ L L L
Sbjct: 108 LSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELAFKLGL 167
Query: 180 QGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMK-NGRLRVLDSKISFDDNALYRHLD 238
+G+ D+ LYK F +KD +L+EINPL++ G + LD+KI+ DDNAL+RH D
Sbjct: 168 EGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPD 227
Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLD 298
+ ELRD SEED RE EA + L+Y+ LDGNIGC+VNGAGLAMATMDI+KLYGG PANFLD
Sbjct: 228 LAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLD 287
Query: 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMR 358
VGGGA ++V AFK+I SD +VK I +NIFGGI RCD + +GI++A+KEV +N+PLV+R
Sbjct: 288 VGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVR 347
Query: 359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397
LEG NV+ G R++AESGLN+I A DLD+AA+K V KG
Sbjct: 348 LEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVELAKG 386
>gnl|CDD|36660 KOG1447, KOG1447, KOG1447, GTP-specific succinyl-CoA synthetase,
beta subunit [Energy production and conversion].
Length = 412
Score = 370 bits (952), Expect = e-103
Identities = 183/395 (46%), Positives = 246/395 (62%), Gaps = 3/395 (0%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
+N+ E+Q+K +L K V V + V + A A K YVVK+QI AGGRGKG F
Sbjct: 20 LNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFN 79
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
KGGV + V+ ++++G L TKQT G +VN V V + DI RE YL
Sbjct: 80 N---GLKGGVHITKDKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYL 136
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
++L+DR +AS QGGMDIE VA+ P+ IFK ID G+ + L
Sbjct: 137 AILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFEGIKESQALRMAKNLGFV 196
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240
G + D LY F D + +EINPL G++ +D+KI+FDDNA +R DI
Sbjct: 197 GPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFRQKDIF 256
Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300
+ D E D RE+EA ++NL+YI +DGNI C+VNGAGLAMATMDIIKL GG PANFLDVG
Sbjct: 257 AMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVG 316
Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360
GG +D+V AFKI+T+D VK IL+NIFGGI+ C + GI+ A +++++N+PLV+RLE
Sbjct: 317 GGVKEDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLE 376
Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395
G NV +++ +SGL + TAIDLDDAA+K V ++
Sbjct: 377 GTNVQEAQKILKKSGLPITTAIDLDDAAKKAVASL 411
>gnl|CDD|38010 KOG2799, KOG2799, KOG2799, Succinyl-CoA synthetase, beta subunit
[Energy production and conversion].
Length = 434
Score = 356 bits (915), Expect = 6e-99
Identities = 182/393 (46%), Positives = 250/393 (63%), Gaps = 4/393 (1%)
Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60
+ IHEY++ ALLRKY + V G V S A + K L V+K+Q+ AGGRGKG F
Sbjct: 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFD 82
Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120
KGGV++ S + + +++G LITKQTGP G + VY+ + E Y
Sbjct: 83 SGL---KGGVKIVFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYF 139
Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180
S+L+DR + IAS++GG++IEEVA+D P I K ID G++ E + D L
Sbjct: 140 SILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKKPIDNNTGLSPEIACLVADKLGFS 199
Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLI-IMKNGRLRVLDSKISFDDNALYRHLDI 239
P LYK F D + +EINPL I + ++ +D+K++FDDNA +R I
Sbjct: 200 PDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKI 259
Query: 240 QELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDV 299
LRD+S+ED RE+ A + +L+YI LDGNIGC+VNGAGLAMATMDIIKL+GG PANFLDV
Sbjct: 260 FLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDV 319
Query: 300 GGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRL 359
GGGA ++V AF +ITSD V IL+NIFGGIMRCDV+ GI+ A +E+++NIP+V+RL
Sbjct: 320 GGGATVEQVREAFSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRL 379
Query: 360 EGANVDIGNRLIAESGLNVITAIDLDDAAQKIV 392
+G V+ +I SG+ + + +LD+AA+K V
Sbjct: 380 QGTRVEAAKPIINTSGMRIRSFDELDEAAKKAV 412
>gnl|CDD|144220 pfam00549, Ligase_CoA, CoA-ligase. This family includes the CoA
ligases Succinyl-CoA synthetase alpha and beta chains,
malate CoA ligase and ATP-citrate lyase. Some members of
the family utilize ATP others use GTP.
Length = 128
Score = 115 bits (290), Expect = 2e-26
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 272 MVNGAGLAMATMDIIKLYGGAPANFLDVGGGA-DQDKVAAAFKIITSDSSVKGILINIFG 330
+VNG LAM MD+IKL GG P NF+D+GG A A K+ +D VK IL++I
Sbjct: 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60
Query: 331 GIMRCDVLVKGILSAVKEVK-INIPLVMRLEGANVDIGNR-----LIAESGLNVITAIDL 384
G C+ G+L A+KE + +P+V R+ G D R +AESG+ + ++ +
Sbjct: 61 GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ 120
Query: 385 DDAAQKIV 392
A V
Sbjct: 121 ALRAAGAV 128
>gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp
(A) domain. Phosphoribosylglycinamide synthetase
catalyses the second step in the de novo biosynthesis of
purine. The reaction catalysed by
Phosphoribosylglycinamide synthetase is the ATP-
dependent addition of 5-phosphoribosylamine to glycine
to form 5'phosphoribosylglycinamide. This domain is
related to the ATP-grasp domain of biotin
carboxylase/carbamoyl phosphate synthetase (see
pfam02786).
Length = 193
Score = 38.4 bits (90), Expect = 0.004
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67
AK ++++ +P A+ + A+S I+ P VVK+ A G+
Sbjct: 6 AKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPA-VVKADGLAAGK------------- 51
Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103
GV V + I + EIL K+ G G V
Sbjct: 52 -GVIVAMDNEEAIKAVDEILE----QKKFGEAGEPV 82
>gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase
(GARS)/Aminoimidazole ribonucleotide synthetase (AIRS)
[Nucleotide transport and metabolism].
Length = 788
Score = 37.2 bits (86), Expect = 0.009
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67
+K + ++N+P AK + A+S I++ V+K+ A G+
Sbjct: 112 SKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGK------------- 158
Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103
GV V S + + IL K G G V
Sbjct: 159 -GVIVAKSKEEAFEAVDSILV----KKVFGSAGKTV 189
>gnl|CDD|37809 KOG2598, KOG2598, KOG2598, Phosphomethylpyrimidine kinase [Coenzyme
transport and metabolism, Transcription].
Length = 523
Score = 36.9 bits (85), Expect = 0.009
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 64 ADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLL 123
+D GG +++ LK + + + G ++IT T V V++ + + +++ L
Sbjct: 32 SDCSGGAGIQADLKVMTA--HGVYGMSVITALTAQNTVGVYSVHLLPPSFVSQQIDACLS 89
Query: 124 -----VDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLE 178
V +T GM + S + IE+ + + I KL++DP+I TS + D++
Sbjct: 90 DIKCDVVKT-GM---LPSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVS 143
Query: 179 LQGQARIDGGDLF-PNLYKAFCDKDMSLLEINPL 211
L + + D+ PN+ +AF EI+ +
Sbjct: 144 LFIEELLPFADILTPNIPEAFILLKKEKREISKI 177
>gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide
transport and metabolism].
Length = 428
Score = 35.1 bits (81), Expect = 0.036
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67
AK ++KY +P A+ V + A++ I G VVK+ A G+
Sbjct: 107 AKDFMKKYGIPTAEYEVFTDPEEAKAYIDEK-GAPIVVKADGLAAGK------------- 152
Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103
GV V +L+ + + E+ L G G+RV
Sbjct: 153 -GVIVAMTLEEAEAAVDEM----LEGNAFGSAGARV 183
>gnl|CDD|35436 KOG0215, KOG0215, KOG0215, RNA polymerase III, second largest
subunit [Transcription].
Length = 1153
Score = 28.4 bits (63), Expect = 3.5
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 11/46 (23%)
Query: 210 PLIIMKNGRLRV--------LDSKISFDD---NALYRHLDIQELRD 244
PLII+ NGR RV LD K +FDD + L +LD+ E D
Sbjct: 616 PLIIVDNGRPRVKQHHMDELLDGKRTFDDFLKDGLIEYLDVNEEND 661
>gnl|CDD|109343 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 370
Score = 28.5 bits (64), Expect = 3.7
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 58 RFKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPT-GSRVNCVY--VEDGADI 114
+E+P D G +R K++ D LI T G+ + + +++ DI
Sbjct: 163 ELREIPTDENGKMRGMDLEKAIEEDKEN----GLIPFFVCATLGTTGSGAFDPLQELGDI 218
Query: 115 LRELYLSLLVDRTSGMVAFIA 135
+ L L VD AFI
Sbjct: 219 CNKYDLWLHVDAAYAGSAFIC 239
>gnl|CDD|34266 COG4647, AcxC, Acetone carboxylase, gamma subunit [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 165
Score = 28.1 bits (62), Expect = 4.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 106 VYVEDGADILRELYLSLLVDRTSGMV--AFIASTQGGM-DIEEVAKDYP 151
+YV D + LRE+Y + M FI G + ++E A YP
Sbjct: 92 IYVRDTEEKLREIYPKSDIPDPQWMEIREFICPECGILHEVEAAAPGYP 140
>gnl|CDD|112254 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 28.2 bits (62), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 303 ADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGA 362
A +D +A+ F ++T FGGIM C L+KG +A+ + I + E
Sbjct: 369 ATKDLMASEFAMMT------------FGGIMTCAKLMKGSFAAINQKFEEINATLTREAT 416
Query: 363 NVDIG 367
++ G
Sbjct: 417 DIAQG 421
>gnl|CDD|147482 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyses
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 27.4 bits (61), Expect = 6.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 210 PLIIMKNGRLRVLDSKISFDDNALYRHLD 238
P++I KNG L S FD L HLD
Sbjct: 130 PIVIEKNGELL---SVTDFDKKGLRYHLD 155
>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase. Crotonyl-CoA
reductase, a member of the medium chain
dehydrogenase/reductase family, catalyzes the
NADPH-dependent conversion of crotonyl-CoA to
butyryl-CoA, a step in (2S)-methylmalonyl-CoA
production for straight-chain fatty acid biosynthesis.
Like enoyl reductase, another enzyme in fatty acid
synthesis, crotonyl-CoA reductase is a member of the
zinc-dependent alcohol dehydrogenase-like medium chain
dehydrogenase/reductase family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES.
Length = 393
Score = 27.4 bits (61), Expect = 6.7
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 63 PADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSL 122
+S+ + I +ILG + V+ G S+
Sbjct: 256 DVNSEAYTAWTKEARRFGKAIWDILGG----------REDPDIVFEHPGRATF---PTSV 302
Query: 123 LVDRTSGMVAFIASTQG 139
V GMV A T G
Sbjct: 303 FVCDRGGMVVICAGTTG 319
>gnl|CDD|73322 cd02755, MopB_Thiosulfate-R-like, The MopB_Thiosulfate-R-like CD
contains thiosulfate-, sulfur-, and
polysulfide-reductases, and other related proteins.
Thiosulfate reductase catalyzes the cleavage of
sulfur-sulfur bonds in thiosulfate. Polysulfide
reductase is a membrane-bound enzyme that catalyzes the
reduction of polysulfide using either hydrogen or
formate as the electron donor. Members of the
MopB_Thiosulfate-R-like CD belong to the
molybdopterin_binding (MopB) superfamily of proteins..
Length = 454
Score = 27.5 bits (61), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 33 SAIKTLPGPLYVVKSQIHAGGRGKGRFKELPAD 65
+ I+ L P + K I G RG+G+F+E D
Sbjct: 45 AGIQLLYDPDRLKKPLIRVGERGEGKFREASWD 77
>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
metallophosphatase domain. CSTP1 (complete
S-transactivated protein 1) is an uncharacterized Homo
sapiens protein with a metallophosphatase domain, that
is transactivated by the complete S protein of hepatitis
B virus. CSTP1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 27.3 bits (61), Expect = 7.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 311 AFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRL 370
F ++ D L+N G + V + + + +IPLV + G N D+GN
Sbjct: 51 KFVVVCGD------LVNAMPGDELRERQVSDLKDVLSLLDPDIPLVC-VCG-NHDVGNTP 102
Query: 371 IAES 374
ES
Sbjct: 103 TEES 106
>gnl|CDD|32204 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 27.2 bits (60), Expect = 7.7
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 98 PTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKL 157
P GS + + D R L +L + + + A + + GGM E A YP ++ +
Sbjct: 119 PYGSDFPVITIRDMVRAQRLLLDALGIKK---LAAVVGGSMGGMQALEWAIRYPDRVRRA 175
Query: 158 LI 159
+
Sbjct: 176 IP 177
>gnl|CDD|37713 KOG2502, KOG2502, KOG2502, Tub family proteins [General function
prediction only].
Length = 355
Score = 27.2 bits (60), Expect = 7.8
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 64 ADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSL 122
A R S + L KQ GP G V C D + + R LYLSL
Sbjct: 77 AGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSL 135
>gnl|CDD|109889 pfam00851, Peptidase_C6, Helper component proteinase. This protein
is found in genome polyproteins of potyviruses.
Length = 453
Score = 26.8 bits (60), Expect = 9.4
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 28/100 (28%)
Query: 105 CVYVEDGADILRELYL---SLLVDRTSGMVAFI---ASTQGGMDI--------------- 143
CV ++DG I EL + + LV SG ++ S G M I
Sbjct: 289 CVTLDDGKPIYSELKMPTKNHLVIGNSGDPKYVDLPKSDSGKMYIAKEGYCYINIFLAML 348
Query: 144 ----EEVAKDYPQKIFKLLIDPLIGV--TSEDVASLCDML 177
E+ AKD+ + + +++ P +G T DVA+ C +L
Sbjct: 349 VNVNEDEAKDFTKMVRDVIV-PKLGKWPTMMDVATACYLL 387
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.138 0.385
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,491,141
Number of extensions: 241213
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 31
Length of query: 398
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,189,273
Effective search space: 1265160446
Effective search space used: 1265160446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)