RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781049|ref|YP_003065462.1| succinyl-CoA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (398 letters) >gnl|CDD|30394 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]. Length = 387 Score = 468 bits (1207), Expect = e-132 Identities = 212/399 (53%), Positives = 271/399 (67%), Gaps = 15/399 (3%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 MN+HEYQAK L KY +PV G V +S AE A K L G VVK+Q+HAGGRGK Sbjct: 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKA--- 57 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADIL-RELY 119 GGV++ S + EILG QT G VN V VE+ DI+ +E Y Sbjct: 58 -------GGVKLAKSPEEAKEAAEEILG---KNYQTDIKGEPVNKVLVEEAVDIIKKEYY 107 Query: 120 LSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLEL 179 LS+++DR+S +AST+GGMDIEEVA+ P+KI K+ +DPL G+ L L L Sbjct: 108 LSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELAFKLGL 167 Query: 180 QGQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMK-NGRLRVLDSKISFDDNALYRHLD 238 +G+ D+ LYK F +KD +L+EINPL++ G + LD+KI+ DDNAL+RH D Sbjct: 168 EGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPD 227 Query: 239 IQELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLD 298 + ELRD SEED RE EA + L+Y+ LDGNIGC+VNGAGLAMATMDI+KLYGG PANFLD Sbjct: 228 LAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLD 287 Query: 299 VGGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMR 358 VGGGA ++V AFK+I SD +VK I +NIFGGI RCD + +GI++A+KEV +N+PLV+R Sbjct: 288 VGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVR 347 Query: 359 LEGANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAVKG 397 LEG NV+ G R++AESGLN+I A DLD+AA+K V KG Sbjct: 348 LEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVELAKG 386 >gnl|CDD|36660 KOG1447, KOG1447, KOG1447, GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]. Length = 412 Score = 370 bits (952), Expect = e-103 Identities = 183/395 (46%), Positives = 246/395 (62%), Gaps = 3/395 (0%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 +N+ E+Q+K +L K V V + V + A A K YVVK+QI AGGRGKG F Sbjct: 20 LNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFN 79 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120 KGGV + V+ ++++G L TKQT G +VN V V + DI RE YL Sbjct: 80 N---GLKGGVHITKDKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYL 136 Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180 ++L+DR +AS QGGMDIE VA+ P+ IFK ID G+ + L Sbjct: 137 AILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFEGIKESQALRMAKNLGFV 196 Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLIIMKNGRLRVLDSKISFDDNALYRHLDIQ 240 G + D LY F D + +EINPL G++ +D+KI+FDDNA +R DI Sbjct: 197 GPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEFRQKDIF 256 Query: 241 ELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDVG 300 + D E D RE+EA ++NL+YI +DGNI C+VNGAGLAMATMDIIKL GG PANFLDVG Sbjct: 257 AMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVG 316 Query: 301 GGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLE 360 GG +D+V AFKI+T+D VK IL+NIFGGI+ C + GI+ A +++++N+PLV+RLE Sbjct: 317 GGVKEDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLE 376 Query: 361 GANVDIGNRLIAESGLNVITAIDLDDAAQKIVHAV 395 G NV +++ +SGL + TAIDLDDAA+K V ++ Sbjct: 377 GTNVQEAQKILKKSGLPITTAIDLDDAAKKAVASL 411 >gnl|CDD|38010 KOG2799, KOG2799, KOG2799, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]. Length = 434 Score = 356 bits (915), Expect = 6e-99 Identities = 182/393 (46%), Positives = 250/393 (63%), Gaps = 4/393 (1%) Query: 1 MNIHEYQAKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFK 60 + IHEY++ ALLRKY + V G V S A + K L V+K+Q+ AGGRGKG F Sbjct: 23 LGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFD 82 Query: 61 ELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYL 120 KGGV++ S + + +++G LITKQTGP G + VY+ + E Y Sbjct: 83 SGL---KGGVKIVFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYF 139 Query: 121 SLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLELQ 180 S+L+DR + IAS++GG++IEEVA+D P I K ID G++ E + D L Sbjct: 140 SILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKKPIDNNTGLSPEIACLVADKLGFS 199 Query: 181 GQARIDGGDLFPNLYKAFCDKDMSLLEINPLI-IMKNGRLRVLDSKISFDDNALYRHLDI 239 P LYK F D + +EINPL I + ++ +D+K++FDDNA +R I Sbjct: 200 PDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKI 259 Query: 240 QELRDVSEEDSREIEAKQHNLSYIALDGNIGCMVNGAGLAMATMDIIKLYGGAPANFLDV 299 LRD+S+ED RE+ A + +L+YI LDGNIGC+VNGAGLAMATMDIIKL+GG PANFLDV Sbjct: 260 FLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDV 319 Query: 300 GGGADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRL 359 GGGA ++V AF +ITSD V IL+NIFGGIMRCDV+ GI+ A +E+++NIP+V+RL Sbjct: 320 GGGATVEQVREAFSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRL 379 Query: 360 EGANVDIGNRLIAESGLNVITAIDLDDAAQKIV 392 +G V+ +I SG+ + + +LD+AA+K V Sbjct: 380 QGTRVEAAKPIINTSGMRIRSFDELDEAAKKAV 412 >gnl|CDD|144220 pfam00549, Ligase_CoA, CoA-ligase. This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP. Length = 128 Score = 115 bits (290), Expect = 2e-26 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Query: 272 MVNGAGLAMATMDIIKLYGGAPANFLDVGGGA-DQDKVAAAFKIITSDSSVKGILINIFG 330 +VNG LAM MD+IKL GG P NF+D+GG A A K+ +D VK IL++I Sbjct: 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60 Query: 331 GIMRCDVLVKGILSAVKEVK-INIPLVMRLEGANVDIGNR-----LIAESGLNVITAIDL 384 G C+ G+L A+KE + +P+V R+ G D R +AESG+ + ++ + Sbjct: 61 GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGRSGQAKALAESGVLIASSNNQ 120 Query: 385 DDAAQKIV 392 A V Sbjct: 121 ALRAAGAV 128 >gnl|CDD|110097 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193 Score = 38.4 bits (90), Expect = 0.004 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67 AK ++++ +P A+ + A+S I+ P VVK+ A G+ Sbjct: 6 AKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPA-VVKADGLAAGK------------- 51 Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103 GV V + I + EIL K+ G G V Sbjct: 52 -GVIVAMDNEEAIKAVDEILE----QKKFGEAGEPV 82 >gnl|CDD|35458 KOG0237, KOG0237, KOG0237, Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]. Length = 788 Score = 37.2 bits (86), Expect = 0.009 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 18/96 (18%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67 +K + ++N+P AK + A+S I++ V+K+ A G+ Sbjct: 112 SKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGK------------- 158 Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103 GV V S + + IL K G G V Sbjct: 159 -GVIVAKSKEEAFEAVDSILV----KKVFGSAGKTV 189 >gnl|CDD|37809 KOG2598, KOG2598, KOG2598, Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism, Transcription]. Length = 523 Score = 36.9 bits (85), Expect = 0.009 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 14/154 (9%) Query: 64 ADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSLL 123 +D GG +++ LK + + + G ++IT T V V++ + + +++ L Sbjct: 32 SDCSGGAGIQADLKVMTA--HGVYGMSVITALTAQNTVGVYSVHLLPPSFVSQQIDACLS 89 Query: 124 -----VDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKLLIDPLIGVTSEDVASLCDMLE 178 V +T GM + S + IE+ + + I KL++DP+I TS + D++ Sbjct: 90 DIKCDVVKT-GM---LPSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVS 143 Query: 179 LQGQARIDGGDLF-PNLYKAFCDKDMSLLEINPL 211 L + + D+ PN+ +AF EI+ + Sbjct: 144 LFIEELLPFADILTPNIPEAFILLKKEKREISKI 177 >gnl|CDD|30500 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]. Length = 428 Score = 35.1 bits (81), Expect = 0.036 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 19/96 (19%) Query: 8 AKALLRKYNVPVAKGVVISSVHAAESAIKTLPGPLYVVKSQIHAGGRGKGRFKELPADSK 67 AK ++KY +P A+ V + A++ I G VVK+ A G+ Sbjct: 107 AKDFMKKYGIPTAEYEVFTDPEEAKAYIDEK-GAPIVVKADGLAAGK------------- 152 Query: 68 GGVRVESSLKSVISDIREILGSTLITKQTGPTGSRV 103 GV V +L+ + + E+ L G G+RV Sbjct: 153 -GVIVAMTLEEAEAAVDEM----LEGNAFGSAGARV 183 >gnl|CDD|35436 KOG0215, KOG0215, KOG0215, RNA polymerase III, second largest subunit [Transcription]. Length = 1153 Score = 28.4 bits (63), Expect = 3.5 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 11/46 (23%) Query: 210 PLIIMKNGRLRV--------LDSKISFDD---NALYRHLDIQELRD 244 PLII+ NGR RV LD K +FDD + L +LD+ E D Sbjct: 616 PLIIVDNGRPRVKQHHMDELLDGKRTFDDFLKDGLIEYLDVNEEND 661 >gnl|CDD|109343 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain. Length = 370 Score = 28.5 bits (64), Expect = 3.7 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%) Query: 58 RFKELPADSKGGVRVESSLKSVISDIREILGSTLITKQTGPT-GSRVNCVY--VEDGADI 114 +E+P D G +R K++ D LI T G+ + + +++ DI Sbjct: 163 ELREIPTDENGKMRGMDLEKAIEEDKEN----GLIPFFVCATLGTTGSGAFDPLQELGDI 218 Query: 115 LRELYLSLLVDRTSGMVAFIA 135 + L L VD AFI Sbjct: 219 CNKYDLWLHVDAAYAGSAFIC 239 >gnl|CDD|34266 COG4647, AcxC, Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 165 Score = 28.1 bits (62), Expect = 4.0 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 106 VYVEDGADILRELYLSLLVDRTSGMV--AFIASTQGGM-DIEEVAKDYP 151 +YV D + LRE+Y + M FI G + ++E A YP Sbjct: 92 IYVRDTEEKLREIYPKSDIPDPQWMEIREFICPECGILHEVEAAAPGYP 140 >gnl|CDD|112254 pfam03429, MSP1b, Major surface protein 1B. The major surface protein (MSP1) of the cattle pathogen Anaplasma is a heterodimer comprised of MSP1a and MSP1b. This family is the MSP1b chain. There MSP1 proteins are putative adhesins for bovine erythrocytes. Length = 726 Score = 28.2 bits (62), Expect = 4.5 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 12/65 (18%) Query: 303 ADQDKVAAAFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGA 362 A +D +A+ F ++T FGGIM C L+KG +A+ + I + E Sbjct: 369 ATKDLMASEFAMMT------------FGGIMTCAKLMKGSFAAINQKFEEINATLTREAT 416 Query: 363 NVDIG 367 ++ G Sbjct: 417 DIAQG 421 >gnl|CDD|147482 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19 kDa subunit. This family contains several DNA-directed RNA polymerase 19 kDa polypeptides. The Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Length = 167 Score = 27.4 bits (61), Expect = 6.4 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Query: 210 PLIIMKNGRLRVLDSKISFDDNALYRHLD 238 P++I KNG L S FD L HLD Sbjct: 130 PIVIEKNGELL---SVTDFDKKGLRYHLD 155 >gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393 Score = 27.4 bits (61), Expect = 6.7 Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 13/77 (16%) Query: 63 PADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSL 122 +S+ + I +ILG + V+ G S+ Sbjct: 256 DVNSEAYTAWTKEARRFGKAIWDILGG----------REDPDIVFEHPGRATF---PTSV 302 Query: 123 LVDRTSGMVAFIASTQG 139 V GMV A T G Sbjct: 303 FVCDRGGMVVICAGTTG 319 >gnl|CDD|73322 cd02755, MopB_Thiosulfate-R-like, The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 454 Score = 27.5 bits (61), Expect = 7.5 Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 33 SAIKTLPGPLYVVKSQIHAGGRGKGRFKELPAD 65 + I+ L P + K I G RG+G+F+E D Sbjct: 45 AGIQLLYDPDRLKKPLIRVGERGEGKFREASWD 77 >gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 262 Score = 27.3 bits (61), Expect = 7.7 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 311 AFKIITSDSSVKGILINIFGGIMRCDVLVKGILSAVKEVKINIPLVMRLEGANVDIGNRL 370 F ++ D L+N G + V + + + +IPLV + G N D+GN Sbjct: 51 KFVVVCGD------LVNAMPGDELRERQVSDLKDVLSLLDPDIPLVC-VCG-NHDVGNTP 102 Query: 371 IAES 374 ES Sbjct: 103 TEES 106 >gnl|CDD|32204 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport and metabolism]. Length = 368 Score = 27.2 bits (60), Expect = 7.7 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 98 PTGSRVNCVYVEDGADILRELYLSLLVDRTSGMVAFIASTQGGMDIEEVAKDYPQKIFKL 157 P GS + + D R L +L + + + A + + GGM E A YP ++ + Sbjct: 119 PYGSDFPVITIRDMVRAQRLLLDALGIKK---LAAVVGGSMGGMQALEWAIRYPDRVRRA 175 Query: 158 LI 159 + Sbjct: 176 IP 177 >gnl|CDD|37713 KOG2502, KOG2502, KOG2502, Tub family proteins [General function prediction only]. Length = 355 Score = 27.2 bits (60), Expect = 7.8 Identities = 18/59 (30%), Positives = 21/59 (35%) Query: 64 ADSKGGVRVESSLKSVISDIREILGSTLITKQTGPTGSRVNCVYVEDGADILRELYLSL 122 A R S + L KQ GP G V C D + + R LYLSL Sbjct: 77 AGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSL 135 >gnl|CDD|109889 pfam00851, Peptidase_C6, Helper component proteinase. This protein is found in genome polyproteins of potyviruses. Length = 453 Score = 26.8 bits (60), Expect = 9.4 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 28/100 (28%) Query: 105 CVYVEDGADILRELYL---SLLVDRTSGMVAFI---ASTQGGMDI--------------- 143 CV ++DG I EL + + LV SG ++ S G M I Sbjct: 289 CVTLDDGKPIYSELKMPTKNHLVIGNSGDPKYVDLPKSDSGKMYIAKEGYCYINIFLAML 348 Query: 144 ----EEVAKDYPQKIFKLLIDPLIGV--TSEDVASLCDML 177 E+ AKD+ + + +++ P +G T DVA+ C +L Sbjct: 349 VNVNEDEAKDFTKMVRDVIV-PKLGKWPTMMDVATACYLL 387 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.138 0.385 Gapped Lambda K H 0.267 0.0683 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,491,141 Number of extensions: 241213 Number of successful extensions: 612 Number of sequences better than 10.0: 1 Number of HSP's gapped: 603 Number of HSP's successfully gapped: 31 Length of query: 398 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 302 Effective length of database: 4,189,273 Effective search space: 1265160446 Effective search space used: 1265160446 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.2 bits)