HHsearch alignment for GI: 254781050 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=98.26 E-value=5.9e-05 Score=51.95 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=89.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---CEEEC--CCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHH
Q ss_conf 399988884377999999986269818997658998---86872--7745775314078503578863688621204567
Q gi|254781050|r 10 KVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKG---STYWT--GGNVNVPVFTTVAEAKERTAANASVIYVPPSGAG 84 (300)
Q Consensus 10 ~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkg---g~~~~--g~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~v~ 84 (300)
T Consensus 2 kV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~DVvIDFS~p~~~~ 79 (122)
T pfam01113 2 KVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLA--DADVLIDFTTPEATL 79 (122)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCC--CCCEEEEECCHHHHH
T ss_conf 899988988789999999985899689999943896122543100146787111244777515--788899906878999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 88999985399589980588468889999998401771894068
Q gi|254781050|r 85 DAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPN 128 (300)
Q Consensus 85 dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPN 128 (300)
T Consensus 80 ~~~~~~~~~~~~-~ViGTTG~s~~~~~~i~~~a~~ipi-~~apN 121 (122)
T pfam01113 80 ENLELALKHGKP-LVIGTTGFTEEQLAELKEAAKKIPI-VIAPN 121 (122)
T ss_pred HHHHHHHHCCCC-EEEECCCCCHHHHHHHHHHHCCCCE-EECCC
T ss_conf 999999967998-8998999999999999998445988-98279