HHsearch results for GI: 254781050 and protein with PDBid: 1yrl_A
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli}
Probab=95.47 E-value=0.021 Score=34.27 Aligned_cols=137 Identities=15% Similarity=0.236 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC---CCEEECC-CCCCCCCCCCHHHHCCCCCCCEEEEECCHHH
Q ss_conf 79739998888437799999998626981899765899---8868727-7457753140785035788636886212045
Q gi|254781050|r 7 KNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKK---GSTYWTG-GNVNVPVFTTVAEAKERTAANASVIYVPPSG 82 (300)
Q Consensus 7 ~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgk---gg~~~~g-~~~~iPvy~sv~ea~~~~~~D~avI~VP~~~ 82 (300)
|+-+|.|.|. |.||.-|+.++.+ +|-||+-|..|+. +...|.. ...+.-|+ ++.||++. +|+.++.+|-..
T Consensus 36 k~k~iaViGy-GsQG~ahAlNLrD-SG~~V~Vglr~~s~~~~s~S~~~A~~dGf~v~-~~~eA~~~--aDvv~~L~pD~~ 110 (491)
T 1yrl_A 36 QGKKVVIVGC-GAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQ--ADLVINLTPDKQ 110 (491)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGG--CSEEEECSCHHH
T ss_pred CCCEEEEEEE-CCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHCCCEEC-CHHHHHHH--CCEEEECCCHHH
T ss_conf 5997999766-7134999867786-59977999467876545325999997699756-79999863--798888698467
Q ss_pred HHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEE
Q ss_conf 678899998539--95899805884688899999984017718940685101355510002001123577867999
Q gi|254781050|r 83 AGDAIIESIEAE--IPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGIL 156 (300)
Q Consensus 83 v~dai~Ea~~ag--ik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~Vgiv 156 (300)
-.+.- +-+... -.....++-||.++- ......+.-++.++-|-+||-..-....-|. + -|+-+++-
T Consensus 111 q~~vy-~~i~p~lk~G~~L~faHGfnI~~--~~i~pp~dvdV~mvAPKgpG~~VR~~y~~G~--G---vp~liAV~ 178 (491)
T 1yrl_A 111 HSDVV-RTVQPLMKDGAALGYSHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGF--G---VPTLIAVH 178 (491)
T ss_dssp HHHHH-HHHHHHSCTTCEEEESSTHHHHT--SCCCCCTTSEEEEEEESCSSTHHHHHHHTTC--C---CCEEEEEC
T ss_pred HHHHH-HHHHHCCCCCCEEEECCCCHHCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHCCC--C---CCEEEEEE
T ss_conf 99999-88513169876676426530114--7722588864899778999707999987279--8---75378873