HHsearch results for GI: 254781050 and protein with PDBid: 2fp4_B

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.54  E-value=0.0024  Score=40.33  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=110.5

Q ss_pred             HHHHHHHHCCCCEEEECCCCEEECCCC-----HHCCEEC------------------------------CCCCCCCCEEE
Q ss_conf             999998401771894068510135551-----0002001------------------------------12357786799
Q gi|254781050|r  111 VRVKARLEKSSSRLIGPNCPGILTPDS-----CKIGIMP------------------------------GSIFRKGSVGI  155 (300)
Q Consensus       111 ~~l~~~A~~~g~riiGPNc~Gii~p~~-----~~lgi~p------------------------------~~~~~pG~Vgi  155 (300)
                      ..|.+.-.++...++==|=+.+..-++     +++.+-.                              ..+--.|+||+
T Consensus       189 ~~Ly~~F~e~Da~LlEINPLv~t~~g~~~aLDaK~~iDDnA~fR~~~~~~~~d~~~~~~~E~~a~~~~l~yv~ldG~Ig~  268 (395)
T 2fp4_B          189 KKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIAC  268 (395)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHHTTCCCTTSCHHHHHHHHTTCEEEECSSSEEE
T ss_pred             HHHHHHHHHCCCCEEEECCEEECCCCCEEEEEEEECCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHCCCCEEECCCCEEE
T ss_conf             99999998568230660114886999879722462246565653532121367755997789998759866514782789


Q ss_pred             EEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHH-HHHHH-HHHHHHHC
Q ss_conf             98054147899999997199516764055674467899999999973998728899970587248-99999-99986422
Q gi|254781050|r  156 LSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAE-EEAAQ-FLKDEAKR  233 (300)
Q Consensus       156 vSqSG~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E-~~aa~-fi~~~~~~  233 (300)
                      +.-.++|+...++.+...|---.-+.-+||.+.. ....+.++.+..||+.|+|++-. .||... .+.|+ .+++.+..
T Consensus       269 ~vnGaGLaMaTmD~i~~~Gg~pANFlD~GG~a~~-e~v~~a~~iil~d~~vk~iliNI-fGGI~~cd~vA~GIi~A~~e~  346 (395)
T 2fp4_B          269 FVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKE-SQVYQAFKLLTADPKVEAILVNI-FGGIVNCAIIANGITKACREL  346 (395)
T ss_dssp             EESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCH-HHHHHHHHHHHHCTTCCEEEEEE-EESSSCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHHHHCCCCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHC
T ss_conf             8437642110257898715773315641788878-99999999996399987899998-087303599999999999961


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--EECCCHHHHHHHHHHHHH
Q ss_conf             67552689984301576553220011224888899999999998897--578898999999999984
Q gi|254781050|r  234 GRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGI--CIAPSPARIGRSLVELLG  298 (300)
Q Consensus       234 ~~~KPVva~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv--~v~~s~~el~~~l~~~l~  298 (300)
                      ..+.|||+-..|.....|+                    +.|+++|.  ..+++++|-.....+++.
T Consensus       347 ~~~vpivVRl~Gtn~~eg~--------------------~iL~~sgl~i~~~~~l~~A~~kaV~~~~  393 (395)
T 2fp4_B          347 ELKVPLVVRLEGTNVHEAQ--------------------NILTNSGLPITSAVDLEDAAKKAVASVT  393 (395)
T ss_dssp             TCCSCEEEEEEETTHHHHH--------------------HHHHHTCSCCEECSSHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECCCCCHHHHH--------------------HHHHHCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             9998789999989989999--------------------9999779974874899999999999963