HHsearch results for GI: 254781050 and protein with PDBid: 2yv1_A
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii DSM2661}
Probab=100.00 E-value=0 Score=639.95 Aligned_cols=289 Identities=51% Similarity=0.854 Sum_probs=279.0
Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCH
Q ss_conf 95677179739998888437799999998626981899765899886872774577531407850357886368862120
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERTAANASVIYVPP 80 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~~~D~avI~VP~ 80 (300)
|.||+||||||||||||||+|+||+++|++| ||||||||||+|+|+++.| +|+|+||+|+++++++|+++|+||+
T Consensus 6 ~~i~~~~~t~v~vqGitg~~g~~~~~~~~~~-gt~iv~gVnP~~gG~ev~G----~p~y~sV~e~p~~~~~D~avI~vPa 80 (294)
T 2yv1_A 6 KMILLDENTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKGGQNVHG----VPVFDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp -CCSSCTTCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCTTCEETT----EEEESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEC----CCCCCCHHHHHCCCCCCEEEEECCH
T ss_conf 4599849986999899882889999999982-9967998788988507848----2155748876337787489996681
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEECC
Q ss_conf 45678899998539958998058846888999999840177189406851013555100020011235778679998054
Q gi|254781050|r 81 SGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSG 160 (300)
Q Consensus 81 ~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqSG 160 (300)
++++++++||+++|||.+|++|||||++|+++++++||++|+||+||||+|+++|+..+++++|...++||+||++||||
T Consensus 81 ~~v~~a~~ea~~~Gvk~~viit~g~~~~~~~~l~~~a~~~g~rliGPNc~Gii~p~~~~~~~~~~~~~~~G~igiiSqSG 160 (294)
T 2yv1_A 81 PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSG 160 (294)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCS
T ss_pred HHHHHHHHHHHHCCCCEEEEEECEECHHHHHHHHHHHHCCCCEEECCCCCEEECHHHCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 67899999999769968999702164311367888876069799989977557644431532540015788768998136
Q ss_pred CHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 14789999999719951676405567446789999999997399872889997058724899999999864226755268
Q gi|254781050|r 161 TLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240 (300)
Q Consensus 161 ~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPVv 240 (300)
+|++++++|++++|+|||++||+|||+++++++.|+|+||++||+|++|+||+|++|..|..++++++ ..+||||
T Consensus 161 ~l~~~i~~~~~~~G~G~S~~vs~Gn~~~~d~~~~d~l~~~~~Dp~T~~I~ly~E~~g~~~~~~~~~~~-----~~~KPVV 235 (294)
T 2yv1_A 161 TLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIE-----KMKKPVI 235 (294)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHHHHT-----TCSSCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH-----HCCCCEE
T ss_conf 49999999999839988999944887323434999999752499862899999966865089999998-----6499579
Q ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
Q ss_conf 99843015765532200112248888999999999988975788989999999999843
Q gi|254781050|r 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 241 a~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300)
+||+|||+|.+++||||||+++++.|+++.|.++|||+||+++++++||+++++++|+|
T Consensus 236 ~~k~Grsa~~~~a~sHtGala~~~~G~~~~~~aa~~qaGV~~v~~~~el~~~l~~~l~k 294 (294)
T 2yv1_A 236 GYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILGK 294 (294)
T ss_dssp EEEECC-------------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHHC-
T ss_pred EEEEECCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCC
T ss_conf 99820557864445426664168898899999999977986839999999999998674