HHsearch results for GI: 254781050 and protein with PDBid: 2yv2_A
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1}
Probab=100.00 E-value=0 Score=601.30 Aligned_cols=291 Identities=46% Similarity=0.840 Sum_probs=274.4
Q ss_pred CEEEEECCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCHHHHCCCC-CCCEEEEECC
Q ss_conf 956771797399988884377999999986269818997658998868727745775314078503578-8636886212
Q gi|254781050|r 1 MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFTTVAEAKERT-AANASVIYVP 79 (300)
Q Consensus 1 msil~~~~t~vivqGitg~~g~~~~~~~~~y~gt~ivagV~Pgkgg~~~~g~~~~iPvy~sv~ea~~~~-~~D~avI~VP 79 (300)
||||+|+||||+|||+||++|++|+++|++| |||+||||||+|||+++.| +|+|+||+|+++.+ ++|+++|+||
T Consensus 6 m~~l~~~~t~v~v~G~tg~~g~~~~~~~~~~-gt~~v~gVnP~~gG~~v~G----~p~y~SV~d~~~~~~~vDlavi~vP 80 (297)
T 2yv2_A 6 MAVLVDSETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSEVHG----VPVYDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp ---CCSTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCEETT----EEEESSHHHHHHHCTTCCEEEECCC
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEC----EECCCCHHHHHCCCCCCCEEEEECC
T ss_conf 9999779981999899883757999999981-9967988779988637828----6324708887417888648999047
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCCCHHCCEECCCCCCCCCEEEEEEC
Q ss_conf 04567889999853995899805884688899999984017718940685101355510002001123577867999805
Q gi|254781050|r 80 PSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKSSSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRS 159 (300)
Q Consensus 80 ~~~v~dai~Ea~~agik~iviiteGip~~d~~~l~~~A~~~g~riiGPNc~Gii~p~~~~lgi~p~~~~~pG~VgivSqS 159 (300)
++.++++++||+++|+|.+||+|+||+++|+++++++||++|+|++||||+|+++|+..+.+++|...++||+|+++|||
T Consensus 81 a~~v~~~v~e~~~~Gvk~~viitaGf~e~~~~~l~~~a~~~g~rliGPNc~G~i~p~~~~~~~~~~~~~~~G~va~iSQS 160 (297)
T 2yv2_A 81 APFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATIIGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRS 160 (297)
T ss_dssp GGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESC
T ss_pred CCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCEECCCCCEEEECCCCCCCCCCEEEEEEE
T ss_conf 31009999999877998899967998805379999976631988965886514557754589776001689876799733
Q ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 41478999999971995167640556744678999999999739987288999705872489999999986422675526
Q gi|254781050|r 160 GTLTYEAVFQTSQEGLGQSTAVGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPI 239 (300)
Q Consensus 160 G~l~~e~~~~~~~~g~G~S~~VsiG~D~~~G~~~~d~L~~~~~Dp~T~~Ivl~gEiGG~~E~~aa~fi~~~~~~~~~KPV 239 (300)
|+|++++++|++++|+|||+++|+|||++.++++.|+|+||++||+|++|+||+|.+++.+...+++. ++...+|||
T Consensus 161 G~l~~~i~~~~~~~g~G~s~~vs~Gn~~~~~v~~~d~l~~l~~Dp~T~~I~ly~E~~~~~~~~~~~~~---~~~~~~KPV 237 (297)
T 2yv2_A 161 GTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMI---KKGEFTKPV 237 (297)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHHHHHH---HTTSCCSCE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHH---HHCCCCCCE
T ss_conf 58999999999984997578995378753575177999998647886679999970365305777887---734799988
Q ss_pred EEEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC
Q ss_conf 899843015765532200112248888999999999988975788989999999999843
Q gi|254781050|r 240 VGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGS 299 (300)
Q Consensus 240 va~~~GrtAp~g~~~gHaGAi~~~~~g~a~~k~~al~~aGv~v~~s~~el~~~l~~~l~~ 299 (300)
|+||+|||++.++++|||||++++..|+++.+.++|||+||+++++++||+++++++|++
T Consensus 238 v~lk~Grs~~~~~a~sHTGal~~~~aG~~~~~~aa~~qaGVi~v~~~~el~~~lk~~l~r 297 (297)
T 2yv2_A 238 IAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALRR 297 (297)
T ss_dssp EEEESCCC------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC--
T ss_pred EEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCC
T ss_conf 999951578743233325441268888899999999987985919999999999998766