BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase
subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
         (300 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781050|ref|YP_003065463.1| succinyl-CoA synthetase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 300

 Score =  599 bits (1545), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT 60
           MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT
Sbjct: 1   MSILVDKNTKVLVQGLTGKAGTFHTEQAILYCQTQVVGGIHPKKGSTYWTGGNVNVPVFT 60

Query: 61  TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120
           TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS
Sbjct: 61  TVAEAKERTAANASVIYVPPSGAGDAIIESIEAEIPLIVCITEGIPVLDMVRVKARLEKS 120

Query: 121 SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA 180
           SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA
Sbjct: 121 SSRLIGPNCPGILTPDSCKIGIMPGSIFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTA 180

Query: 181 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240
           VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV
Sbjct: 181 VGIGGDPVKGTEFIDVLELFLADEATESIVMVGEIGGSAEEEAAQFLKDEAKRGRKKPIV 240

Query: 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300
           GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL
Sbjct: 241 GFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGRSLVELLGSL 300


>gi|254780815|ref|YP_003065228.1| hypothetical protein CLIBASIA_03530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 232

 Score = 29.6 bits (65), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 232 KRGRKKPIVGFVAGKTAPPGRTMGHAGAVISGGKGGAEDKINAMKEAGICIAPSPARIGR 291
           K G +KP  GF +GK     R       +I+ GKG  +D ++++ E    + P   R+ +
Sbjct: 34  KTGNEKPFSGFFSGKYVFSKR---DERGIITLGKGKKKDNLDSINE----LFPIGTRLNK 86

Query: 292 SLVELLG 298
            + +++ 
Sbjct: 87  VMRDIVS 93


>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 22.7 bits (47), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 147 IFRKGSVGILSRSGTLTYEAVFQTSQEGLGQSTAVGIGGDP 187
           ++ KG++  L   G++ +E +   S   LG   A+GIGG P
Sbjct: 26  VYGKGAIMQLGSQGSI-FEGIEVVSSGSLGLDIALGIGGFP 65


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,935
Number of Sequences: 1233
Number of extensions: 6916
Number of successful extensions: 9
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 300
length of database: 328,796
effective HSP length: 73
effective length of query: 227
effective length of database: 238,787
effective search space: 54204649
effective search space used: 54204649
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 38 (19.2 bits)