254781051
alpha-ketoglutarate decarboxylase
| GeneID in NCBI database: | 8210074 | Locus tag: | CLIBASIA_04765 |
| Protein GI in NCBI database: | 254781051 | Protein Accession: | YP_003065464.1 |
| Gene range: | +(1052903, 1055776) | Protein Length: | 957aa |
| Gene description: | alpha-ketoglutarate decarboxylase | ||
| COG prediction: | [C] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes | ||
| KEGG prediction: | kgd; alpha-ketoglutarate decarboxylase (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] | ||
| SEED prediction: | 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) | ||
| Pathway involved in KEGG: | Citrate cycle (TCA cycle) [PATH:las00020]
Lysine degradation [PATH:las00310] Tryptophan metabolism [PATH:las00380] | ||
| Subsystem involved in SEED: | TCA Cycle | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | |||
| 255764490 | 364 | dehydrogenase, E1 component [Candidatus Liberibact | 1e-10 |
| >gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] Length = 364 | Back alignment |
|---|
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT 426
RS + ++ GD A A QG V E+F ++ L V I++I NNQ T+ S A + T
Sbjct: 178 RSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQT 233
Query: 427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEP 486
S S IP V+G D AV + AV++ ++I+++ YR GH+ D
Sbjct: 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
Query: 487 SFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE--AEYKESE 541
++ +RS+ ++ L+ N+ S+ +L+ + N K + E+ +S+
Sbjct: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | |||
| 315122389 | 967 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | 1 | 0.0 | |
| 239833051 | 1000 | 2-oxoglutarate dehydrogenase, E1 component [Ochrobactru | 1 | 0.0 | |
| 190893735 | 994 | oxoglutarate dehydrogenase E1 protein [Rhizobium etli C | 1 | 0.0 | |
| 209551253 | 994 | 2-oxoglutarate dehydrogenase E1 component [Rhizobium le | 1 | 0.0 | |
| 153008268 | 1001 | 2-oxoglutarate dehydrogenase E1 component [Ochrobactrum | 1 | 0.0 | |
| 86359469 | 994 | alpha-ketoglutarate decarboxylase [Rhizobium etli CFN 4 | 1 | 0.0 | |
| 150398138 | 998 | 2-oxoglutarate dehydrogenase E1 component [Sinorhizobiu | 1 | 0.0 | |
| 222150038 | 998 | 2-oxoglutarate dehydrogenase E1 component [Agrobacteriu | 1 | 0.0 | |
| 15966806 | 998 | alpha-ketoglutarate decarboxylase [Sinorhizobium melilo | 1 | 0.0 | |
| 307301634 | 998 | 2-oxoglutarate dehydrogenase, E1 subunit [Sinorhizobium | 1 | 0.0 |
| >gi|315122389|ref|YP_004062878.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 967 | Back alignment and organism information |
|---|
Score = 1455 bits (3766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 716/967 (74%), Positives = 821/967 (84%), Gaps = 10/967 (1%)
Query: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60
M QDLNK SLSSFL+G N YIEDLYK Y+ DPSSVC+DW+ LF F D+NS++YD LED
Sbjct: 1 MQQDLNKRLSLSSFLNGANFSYIEDLYKHYKTDPSSVCEDWHRLFLFFDDNSQDYDQLED 60
Query: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120
I+SF ++ESV+ V S+KK S S +QS+KDFFQ MKMIDAYRSYGHF A+ DP
Sbjct: 61 CISSFSQQESVSKVVVSEKKKKDARSFSSDNSQSLKDFFQAMKMIDAYRSYGHFSAHTDP 120
Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180
LG+NSH D +ELSPA YGF +ADY+RKI M+G+LG E ATI EI++ LS LYCSNIGVE
Sbjct: 121 LGFNSHHIDFAELSPAFYGFTEADYNRKIFMQGILGFEYATIIEILETLSRLYCSNIGVE 180
Query: 181 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240
FMHI++S ERDW+R+ E+ DFS+ S +E++ IL KLV AEGFEKFIDIKYKGAKRFGA
Sbjct: 181 FMHIINSKERDWIRDVFENPDFSNKLSNDERKSILKKLVEAEGFEKFIDIKYKGAKRFGA 240
Query: 241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300
DGSEVIIPAIEEIIRQGVQQG+ EMILGMAHRGRLNVLSQ+MNK PRSIFYEFKG+G +
Sbjct: 241 DGSEVIIPAIEEIIRQGVQQGIAEMILGMAHRGRLNVLSQVMNKPPRSIFYEFKGEGSVD 300
Query: 301 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEK 360
KEYSGDVKYHLG CC+RQI GK+V LLL +NPSHLEFVD V IGSVRARQDLK + GE+
Sbjct: 301 KEYSGDVKYHLGACCSRQISGKNVDLLLCNNPSHLEFVDSVAIGSVRARQDLKTNVSGEE 360
Query: 361 SISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS 420
S+SL +RS+ LP+IIHGDAAF GQG+VSET LSGL GYTVAGNIHLI+NNQIGFTTNPS
Sbjct: 361 SVSLSDRSKFLPIIIHGDAAFIGQGVVSETLALSGLHGYTVAGNIHLIVNNQIGFTTNPS 420
Query: 421 SARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH 480
SARS Y+SDI+KSIGIPIFHVNGDDPE+V+RV+RMAV +RMKFHKSVVIDI+CYRRFGH
Sbjct: 421 SARSSPYSSDIAKSIGIPIFHVNGDDPESVVRVIRMAVLYRMKFHKSVVIDILCYRRFGH 480
Query: 481 NEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKES 540
NE D+PSFTQP+MY+ IRSHKSVLQ+YAD+L++++VIS QE QSL +NW YLE E+KES
Sbjct: 481 NECDDPSFTQPVMYQRIRSHKSVLQIYADTLVQDKVISTQEFQSLVSNWRTYLEKEFKES 540
Query: 541 ESYCPEKLGLLHNG---ENERKNS-------VSKEILKKIGSSIIRLPKSFNTHKIVERL 590
E+Y PEK+ L N + RKN VS+++LK+IGS I LP SF HKIVERL
Sbjct: 541 ENYRPEKVSALSNCFPVPSVRKNDKEVQNGFVSQKMLKEIGSKISCLPNSFKAHKIVERL 600
Query: 591 MANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGK 650
M NR++MIE GIDW+MAE+LAFGSLC EGY+VRLSGQDCERGTFSHRH++L DQET K
Sbjct: 601 MKNRREMIEKDAGIDWAMAEALAFGSLCCEGYRVRLSGQDCERGTFSHRHSVLYDQETEK 660
Query: 651 RYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVIL 710
RY PL NI +DQG EVVNS LSEQAVLGFEYGYSL N N+LTIWEAQFGDFANGAQ+IL
Sbjct: 661 RYVPLNNILQDQGRYEVVNSLLSEQAVLGFEYGYSLENPNSLTIWEAQFGDFANGAQIIL 720
Query: 711 DQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANY 770
DQF+++GEQKWL S+LVCLLPHGYEGQGPEHSSARLERFLQMCAENNM VANCTSPANY
Sbjct: 721 DQFVSSGEQKWLRVSHLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMRVANCTSPANY 780
Query: 771 FHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVK 830
FHILRRQIYDRSS+PLIMM PKSLLRHK+VVS+LS+M+ + FQ VLSD A+ GK S+K
Sbjct: 781 FHILRRQIYDRSSKPLIMMTPKSLLRHKQVVSTLSEMSDETAFQPVLSDHADCSGKVSIK 840
Query: 831 LKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAE 890
L EDS IRRVILCTGKVYYDLL+NR++RNI DIYL+RIEQLYPFPED L K+L RF QA+
Sbjct: 841 LVEDSRIRRVILCTGKVYYDLLENRNIRNIVDIYLIRIEQLYPFPEDCLKKILLRFAQAD 900
Query: 891 IVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950
+VWCQEEPQNMGAW FIEPYLEKVL SI A SRVRYVGR SASTAVG+MSRHLEQLSS
Sbjct: 901 MVWCQEEPQNMGAWAFIEPYLEKVLGSISASCSRVRYVGRPQSASTAVGNMSRHLEQLSS 960
Query: 951 FIEDALK 957
++DAL+
Sbjct: 961 LVKDALE 967
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|239833051|ref|ZP_04681380.1| 2-oxoglutarate dehydrogenase, E1 component [Ochrobactrum intermedium LMG 3301] Length = 1000 | Back alignment and organism information |
|---|
| >gi|190893735|ref|YP_001980277.1| oxoglutarate dehydrogenase E1 protein [Rhizobium etli CIAT 652] Length = 994 | Back alignment and organism information |
|---|
| >gi|209551253|ref|YP_002283170.1| 2-oxoglutarate dehydrogenase E1 component [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 994 | Back alignment and organism information |
|---|
| >gi|153008268|ref|YP_001369483.1| 2-oxoglutarate dehydrogenase E1 component [Ochrobactrum anthropi ATCC 49188] Length = 1001 | Back alignment and organism information |
|---|
| >gi|86359469|ref|YP_471361.1| alpha-ketoglutarate decarboxylase [Rhizobium etli CFN 42] Length = 994 | Back alignment and organism information |
|---|
| >gi|150398138|ref|YP_001328605.1| 2-oxoglutarate dehydrogenase E1 component [Sinorhizobium medicae WSM419] Length = 998 | Back alignment and organism information |
|---|
| >gi|222150038|ref|YP_002550995.1| 2-oxoglutarate dehydrogenase E1 component [Agrobacterium vitis S4] Length = 998 | Back alignment and organism information |
|---|
| >gi|15966806|ref|NP_387159.1| alpha-ketoglutarate decarboxylase [Sinorhizobium meliloti 1021] Length = 998 | Back alignment and organism information |
|---|
| >gi|307301634|ref|ZP_07581393.1| 2-oxoglutarate dehydrogenase, E1 subunit [Sinorhizobium meliloti BL225C] Length = 998 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | ||
| KOG0450 | 1017 | KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase | 0.0 | |
| PRK09404 | 924 | PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 compone | 0.0 | |
| TIGR00239 | 929 | TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 | 0.0 | |
| COG0567 | 906 | COG0567, SucA, 2-oxoglutarate dehydrogenase complex, de | 0.0 | |
| KOG0451 | 913 | KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate deh | 0.0 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; Revie | 0.0 | |
| cd02016 | 265 | cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) | 1e-113 | |
| pfam02779 | 174 | pfam02779, Transket_pyr, Transketolase, pyrimidine bind | 2e-45 | |
| smart00861 | 168 | smart00861, Transket_pyr, Transketolase, pyrimidine bin | 3e-30 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 3e-44 | |
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate ( | 1e-10 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase co | 5e-10 | |
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 com | 2e-07 | |
| KOG0225 | 394 | KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, a | 8e-05 | |
| PTZ00182 | 355 | PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenas | 0.003 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; Revie | 0.004 |
| >gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
| >gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
| >gnl|CDD|145763 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|129094 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
| >gnl|CDD|48163 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
| >gnl|CDD|31269 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >gnl|CDD|35446 KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | ||
| PRK09404 | 931 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| KOG0450 | 1017 | consensus | 100.0 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydrogenas | 100.0 | |
| TIGR00239 | 990 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; | 100.0 | |
| PRK12270 | 1234 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| KOG0451 | 913 | consensus | 100.0 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E | 100.0 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase, alp | 96.21 | |
| pfam00676 | 303 | E1_dh Dehydrogenase E1 component. This family uses thia | 99.97 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, alph | 99.89 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) famil | 99.89 | |
| CHL00149 | 343 | odpA pyruvate dehydrogenase E1 component alpha subunit; | 99.89 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, alph | 99.88 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, deh | 99.77 | |
| KOG0225 | 394 | consensus | 99.6 | |
| pfam02779 | 174 | Transket_pyr Transketolase, pyrimidine binding domain. | 99.7 | |
| smart00861 | 168 | Transket_pyr Transketolase, pyrimidine binding domain. | 99.39 | |
| cd07036 | 167 | TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding doma | 98.86 | |
| cd07033 | 156 | TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of | 97.22 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 99.24 | |
| PRK05444 | 576 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 98.6 | |
| PRK05899 | 661 | transketolase; Reviewed | 94.03 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 99.24 | |
| CHL00144 | 326 | odpB pyruvate dehydrogenase E1 component beta subunit; | 99.22 | |
| PRK09212 | 327 | pyruvate dehydrogenase subunit beta; Validated | 99.14 | |
| PTZ00182 | 355 | 3-methyl-2-oxobutanate dehydrogenase; Provisional | 99.23 | |
| COG0022 | 324 | AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, deh | 98.72 | |
| KOG0525 | 362 | consensus | 97.26 | |
| KOG1182 | 432 | consensus | 97.71 | |
| PRK12571 | 642 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 97.58 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transketola | 97.54 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfam | 97.09 | |
| pfam02775 | 150 | TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal | 95.89 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC | 91.8 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 91.4 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, Co | 90.23 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfam | 96.86 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, | 96.73 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subf | 96.59 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-l | 96.46 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 96.46 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_I | 96.43 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, | 95.98 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydr | 95.52 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subf | 95.29 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate o | 95.05 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolacta | 95.05 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [acetolac | 93.7 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR- | 93.07 | |
| PRK08659 | 377 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; | 96.74 | |
| PRK09627 | 375 | oorA 2-oxoglutarate-acceptor oxidoreductase subunit Oor | 94.5 | |
| COG0674 | 365 | PorA Pyruvate:ferredoxin oxidoreductase and related 2-o | 94.23 | |
| PRK08366 | 394 | vorA 2-ketoisovalerate ferredoxin oxidoreductase subuni | 91.25 | |
| PRK07119 | 350 | 2-ketoisovalerate ferredoxin reductase; Validated | 95.55 | |
| PRK06112 | 581 | acetolactate synthase catalytic subunit; Validated | 95.4 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwinia f | 92.57 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxy | 90.65 | |
| PRK08273 | 597 | pyruvate decarboxylase; Provisional | 95.37 | |
| KOG0523 | 632 | consensus | 94.76 | |
| PRK07525 | 589 | sulfoacetaldehyde acetyltransferase; Validated | 93.9 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Mem | 93.4 | |
| PRK09259 | 572 | putative oxalyl-CoA decarboxylase; Validated | 91.44 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 91.42 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 90.59 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validated | 90.56 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 90.38 | |
| PRK09107 | 594 | acetolactate synthase 3 catalytic subunit; Validated | 90.34 | |
| PRK06154 | 556 | hypothetical protein; Provisional | 93.9 | |
| PRK08199 | 553 | acetolactate synthase 2 catalytic subunit; Validated | 92.82 | |
| PRK07449 | 548 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic ac | 91.25 | |
| PRK08327 | 568 | acetolactate synthase catalytic subunit; Validated | 90.44 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha and bet | 93.3 | |
| PRK05858 | 543 | hypothetical protein; Provisional | 92.35 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validated | 92.05 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 90.25 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-phospha | 91.08 | |
| TIGR00553 | 368 | pabB para-aminobenzoate synthase, component I; InterPro | 90.37 |
| >PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >KOG0450 consensus | Back alignment and domain information |
|---|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603 2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide | Back alignment and domain information |
|---|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >KOG0451 consensus | Back alignment and domain information |
|---|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
| >pfam00676 E1_dh Dehydrogenase E1 component | Back alignment and domain information |
|---|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG0225 consensus | Back alignment and domain information |
|---|
| >pfam02779 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
| >smart00861 Transket_pyr Transketolase, pyrimidine binding domain | Back alignment and domain information |
|---|
| >cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins | Back alignment and domain information |
|---|
| >cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins | Back alignment and domain information |
|---|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
| >CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated | Back alignment and domain information |
|---|
| >PRK09212 pyruvate dehydrogenase subunit beta; Validated | Back alignment and domain information |
|---|
| >PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >KOG0525 consensus | Back alignment and domain information |
|---|
| >KOG1182 consensus | Back alignment and domain information |
|---|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
| >pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed | Back alignment and domain information |
|---|
| >COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
| >PRK07119 2-ketoisovalerate ferredoxin reductase; Validated | Back alignment and domain information |
|---|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
| >PRK08273 pyruvate decarboxylase; Provisional | Back alignment and domain information |
|---|
| >KOG0523 consensus | Back alignment and domain information |
|---|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK08199 acetolactate synthase 2 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
| >TIGR00553 pabB para-aminobenzoate synthase, component I; InterPro: IPR005802 Para-aminobenzoate synthase component I (pabB) is closely related to anthranilate synthase component I (trpE) | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | ||
| 2jgd_B | 933 | E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = | 0.0 | |
| 2jgd_A | 933 | E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = | 0.0 | |
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-08 | |
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-08 | |
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-08 | |
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 3e-08 | |
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 4e-08 | |
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 2e-06 |
| >gi|134104926|pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 | Back alignment and structure |
Score = 1188 bits (3074), Expect = 0.0, Method: Composition-based stats.
Identities = 408/966 (42%), Positives = 563/966 (58%), Gaps = 46/966 (4%)
Query: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60
M K + SS+L G N +IE LY+ + DP SV +W F L + D
Sbjct: 1 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS 60
Query: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120
+ + + K A S ++ + + +V+++I+AYR GH AN+DP
Sbjct: 61 QTREYFRRLA---------KDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDP 111
Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLESATIPEIVDVLSHLYCSNIGV 179
LG K +++L P+ + +AD+ + G E+ + E+++ L YC IG
Sbjct: 112 LGLWQQDK-VADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGA 170
Query: 180 EFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239
E+MHI + E+ W++ IE F+ EE++ L +L AEG E+++ K+ GAKRF
Sbjct: 171 EYMHITSTEEKRWIQQRIESGRA--TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228
Query: 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPS 299
+G + +IP ++E+IR G E++LGMAHRGRLNVL ++ K P+ +F EF GK
Sbjct: 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE 288
Query: 300 EKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGE 359
+GDVKYH+G + Q G V L L NPSHLE V PVVIGSVRAR D
Sbjct: 289 H-LGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRL------ 341
Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT-N 418
++VLP+ IHGDAA GQG+V ET +S GY V G + ++INNQ+GFTT N
Sbjct: 342 ---DEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSN 398
Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478
P ARS Y +DI K + PIFHVN DDPEAV V R+A+ FR F + V ID+VCYRR
Sbjct: 399 PLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458
Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538
GHNE DEPS TQP+MY+ I+ H + ++YAD L + +V + ++ + N + L+A
Sbjct: 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDC 518
Query: 539 ESESYCP-------EKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLM 591
+ P L H + E N V + L+++ I +P++ V ++
Sbjct: 519 VVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIY 578
Query: 592 ANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKR 651
A+RQ M K DW AE+LA+ +L EG VRLSG+D RGTF HRHA++ +Q G
Sbjct: 579 ADRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGST 638
Query: 652 YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711
Y PL +I QG V +S LSE+AVL FEYGY+ LTIWEAQFGDFANGAQV++D
Sbjct: 639 YTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698
Query: 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYF 771
QFI++GEQKW LV LLPHGYEGQGPEHSSARLER+LQ+CAE NM V ++PA +
Sbjct: 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVY 758
Query: 772 HILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKL 831
H+LRRQ RPL++M+PKSLLRH VSSL ++ G+ F + + +
Sbjct: 759 HMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGE---------IDE 808
Query: 832 KEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-E 890
+ ++RV++C+GKVYYDLL+ R N D+ ++RIEQLYPFP + +VL +F +
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKD 868
Query: 891 IVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950
VWCQEEP N GAW + + +V+ + +RY GR SAS AVG+MS H +Q
Sbjct: 869 FVWCQEEPLNQGAWYCSQHHFREVI----PFGASLRYAGRPASASPAVGYMSVHQKQQQD 924
Query: 951 FIEDAL 956
+ DAL
Sbjct: 925 LVNDAL 930
|
| >gi|134104925|pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o) Length = 933 | Back alignment and structure |
| >gi|215261382|pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
| >gi|215261326|pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >gi|215261334|pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >gi|149242791|pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
| >gi|215261376|pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
| >gi|33357459|pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | ||
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavoprotein | 0.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha | 1e-14 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; heterotet | 1e-12 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidor | 2e-13 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxidoredu | 2e-06 |
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933 | Back alignment and structure |
|---|
Score = 983 bits (2542), Expect = 0.0
Identities = 410/966 (42%), Positives = 566/966 (58%), Gaps = 46/966 (4%)
Query: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60
M K + SS+L G N +IE LY+ + DP SV +W F L + D
Sbjct: 1 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS 60
Query: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120
+ + + K A S ++ + + +V+++I+AYR GH AN+DP
Sbjct: 61 QTREYFRRLA---------KDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDP 111
Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLESATIPEIVDVLSHLYCSNIGV 179
LG Q +++L P+ + +AD+ + G E+ + E+++ L YC IG
Sbjct: 112 LGL-WQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGA 170
Query: 180 EFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239
E+MHI + E+ W++ IE + F+ EE++ L +L AEG E+++ K+ GAKRF
Sbjct: 171 EYMHITSTEEKRWIQQRIES--GRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228
Query: 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPS 299
+G + +IP ++E+IR G E++LGMAHRGRLNVL ++ K P+ +F EF GK
Sbjct: 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGK-HK 287
Query: 300 EKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGE 359
E +GDVKYH+G + Q G V L L NPSHLE V PVVIGSVRAR D + E
Sbjct: 288 EHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLD----RLDE 343
Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT-N 418
++VLP+ IHGDAA GQG+V ET +S GY V G + ++INNQ+GFTT N
Sbjct: 344 P-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSN 398
Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478
P ARS Y +DI K + PIFHVN DDPEAV V R+A+ FR F + V ID+VCYRR
Sbjct: 399 PLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458
Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538
GHNE DEPS TQP+MY+ I+ H + ++YAD L + +V + ++ + N + L+A
Sbjct: 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDC 518
Query: 539 ESESYCPEKLGLL-------HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLM 591
+ P + H + E N V + L+++ I +P++ V ++
Sbjct: 519 VVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIY 578
Query: 592 ANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKR 651
+RQ M K DW AE+LA+ +L EG VRLSG+D RGTF HRHA++ +Q G
Sbjct: 579 GDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGST 638
Query: 652 YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711
Y PL +I QG V +S LSE+AVL FEYGY+ LTIWEAQFGDFANGAQV++D
Sbjct: 639 YTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698
Query: 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYF 771
QFI++GEQKW LV LLPHGYEGQGPEHSSARLER+LQ+CAE NM V ++PA +
Sbjct: 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVY 758
Query: 772 HILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKL 831
H+LRRQ RPL++M+PKSLLRH VSSL ++ G+ F + + E
Sbjct: 759 HMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGEIDE--------- 808
Query: 832 KEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-E 890
+ ++RV++C+GKVYYDLL+ R N D+ ++RIEQLYPFP + +VL +F +
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKD 868
Query: 891 IVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950
VWCQEEP N GAW + + +V+ + +RY GR SAS AVGHMS H +Q
Sbjct: 869 FVWCQEEPLNQGAWYCSQHHFREVI----PFGASLRYAGRPASASPAVGHMSVHQKQQQD 924
Query: 951 FIEDAL 956
+ DAL
Sbjct: 925 LVNDAL 930
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 | Back alignment and structure |
|---|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 | Back alignment and structure |
|---|
| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 | Back alignment and structure |
|---|
| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 | Back alignment and structure |
|---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 957 | alpha-ketoglutarate decarboxylase [Candidatus Liberibac | ||
| 2jgd_A | 933 | 2-oxoglutarate dehydrogenase E1 component; flavoprotein | 100.0 | |
| 1umd_A | 367 | E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha | 100.0 | |
| 1qs0_A | 407 | 2-oxoisovalerate dehydrogenase alpha-subunit; heterotet | 99.93 | |
| 1w85_A | 368 | Pyruvate dehydrogenase E1 component, alpha subunit; deh | 99.92 | |
| 2ozl_A | 365 | PDHE1-A type I, pyruvate dehydrogenase E1 component alp | 99.97 | |
| 2bfd_A | 400 | 2-oxoisovalerate dehydrogenase alpha subunit; oxidoredu | 99.96 | |
| 1ik6_A | 369 | Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidor | 99.38 | |
| 2bfd_B | 342 | 2-oxoisovalerate dehydrogenase beta subunit; oxidoreduc | 98.9 | |
| 2o1s_A | 621 | 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, | 98.84 | |
| 1umd_B | 324 | E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2 | 98.69 | |
| 1w85_B | 324 | Pyruvate dehydrogenase E1 component, beta subunit; dehy | 98.64 | |
| 2ozl_B | 341 | PDHE1-B, pyruvate dehydrogenase E1 component subunit be | 98.57 | |
| 1qs0_B | 338 | 2-oxoisovalerate dehydrogenase beta-subunit; heterotetr | 98.56 | |
| 2o1x_A | 629 | 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isopr | 98.56 | |
| 2e6k_A | 651 | Transketolase; structural genomics, NPPSFA, national pr | 98.74 | |
| 1gpu_A | 680 | Transketolase; transferase(ketone residues); HET: THD; | 98.68 | |
| 3m49_A | 690 | Transketolase; alpha-beta-alpha sandwich, csgid, transf | 98.28 | |
| 2r8o_A | 669 | Transketolase 1, TK 1; reaction intermediate, calcium, | 98.09 | |
| 3l84_A | 632 | Transketolase; TKT, structural genomics, center for str | 98.66 | |
| 3kom_A | 663 | Transketolase; rossmann fold, csgid, transferase, struc | 95.53 | |
| 1itz_A | 675 | Transketolase; calvin cycle, cofactor, thiamine pyropho | 98.21 | |
| 1r9j_A | 673 | Transketolase; domains, EACH of the alpha/beta type, th | 97.05 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FA | 95.88 | |
| 1yd7_A | 395 | 2-keto acid:ferredoxin oxidoreductase subunit alpha; st | 95.67 | |
| 3ju3_A | 118 | Probable 2-oxoacid ferredoxin oxidoreductase, alpha cha | 93.16 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-car | 95.32 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP), thi | 95.19 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron- | 94.73 | |
| 2nxw_A | 565 | Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate | 90.45 | |
| 2ez9_A | 603 | Pyruvate oxidase; TPP enzyme, reaction intermediate ana | 94.47 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, | 92.63 |
| >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=0 Score=3150.22 Aligned_cols=921 Identities=44% Similarity=0.755 Sum_probs=866.6
Q ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96238899983476367896899999999873805079899999873676433333343444322222222111233344
Q gi|254781051|r 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKK 80 (957)
Q Consensus 1 M~~~~~~~f~~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (957)
|++++|+.|++||||+|+|++|||+||++|++||+|||++|+.||++++.+............ ........
T Consensus 1 M~~s~~k~~l~sSFL~G~Na~YIEeLYe~Yl~DP~SVd~sWr~yF~~l~~~~~~~~~~~s~~~---------~~~~~~~~ 71 (933)
T 2jgd_A 1 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTR---------EYFRRLAK 71 (933)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHHHC
T ss_conf 983488999864566788999999999999649876689999999738666788543344226---------66655302
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCC-CCCC
Q ss_conf 555666555633678999999999999988170454016777777667877678766699978817157256657-8777
Q gi|254781051|r 81 SAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLES 159 (957)
Q Consensus 81 ~~~~~~~~~~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~-g~~~ 159 (957)
.+........+...+.++++|.+||+|||.+||+.|+||||++.. ++.+|+|+|++|||+++|||++|.++++. |.+.
T Consensus 72 ~~~~~~~~~~~~~~~~kq~~v~~LI~AYR~~GHl~A~LDPL~l~~-~~~~~eL~~~~~GLse~DLd~~f~~~~~~~g~~~ 150 (933)
T 2jgd_A 72 DASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQ-QDKVADLDPSFHDLTEADFQETFNVGSFASGKET 150 (933)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHGGGGSCCCSSSCCC-CC---CCSSGGGGCCC-CTTSEEECTTCC---CE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC-CCCCCCCCHHHCCCCHHHHCCEEECCCCCCCCCC
T ss_conf 455556666764667889999999999998561001689999988-8889877974469897994880305766678787
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
Q ss_conf 78999999999840643027772489989999999984145778887988999999999999989999986403362222
Q gi|254781051|r 160 ATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239 (957)
Q Consensus 160 ~tL~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFs 239 (957)
+||+|||++|++||||+||+|||||.|++||+|||+|||+. .+.|++++|++||++|++||+||+|||+||||+||||
T Consensus 151 ~tL~eIi~~L~~~YCgsIG~EymHI~d~eer~Wl~~riE~~--~~~~s~eeK~~iL~~L~~ae~FE~FL~~Kf~g~KRFs 228 (933)
T 2jgd_A 151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228 (933)
T ss_dssp EEHHHHHHHHHHHHHSSEEEECSSCCCHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 73999999999875464404432579999999999998722--7789979999999999999999999987547760673
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 56465899999999999873791079980676552689998853798999998558874322345551001502688983
Q gi|254781051|r 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQI 319 (957)
Q Consensus 240 LEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~ 319 (957)
|||||||||+|++||+.|++.||++||||||||||||||+|||+||++.||+||+|+.. ...++||||||||+|+++++
T Consensus 229 lEG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~EF~g~~~-~~~~sGDVKYHlG~s~~~~~ 307 (933)
T 2jgd_A 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHK-EHLGTGDVKYHMGFSSDFQT 307 (933)
T ss_dssp CTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC---CCSCCCCGGGCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEECC
T ss_conf 47701299999999999975598359983134440578998755899999997527763-12456772225740100015
Q ss_pred CCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 59618999717877310004455323677776416665445556544540478886257533346725887645106774
Q gi|254781051|r 320 CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGY 399 (957)
Q Consensus 320 ~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY 399 (957)
+|++|||+|++||||||+|||||+|+||||||+++|. ++++|||||||||||||||||||||||||+|+||
T Consensus 308 ~g~~v~lsL~~NPSHLE~VnPVv~G~~RA~Q~~~~~~---------~~~kvlpIliHGDAAf~GQGVV~Etl~ls~l~gY 378 (933)
T 2jgd_A 308 DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEP---------SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGY 378 (933)
T ss_dssp TTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSC---------CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTT
T ss_pred CCCEEEEEECCCCCCCEECCCEEECEEEEEEEECCCC---------CCCEEEEEEEECCHHHCCCCHHHHHHHCCCCCCC
T ss_conf 9976999961697410100653411035777202688---------8762566786252664247625876405457886
Q ss_pred CCCCEEEEEECCCEECCC-CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 436579998416020124-7010246778400112203405874267889999999999999997389739986421125
Q gi|254781051|r 400 TVAGNIHLIINNQIGFTT-NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478 (957)
Q Consensus 400 ~tGGTiHiVvNNQIGFTT-~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~ 478 (957)
+||||||||||||||||| +|+|+|||+||||||||++||||||||||||||++|++||++||++|+|||||||||||||
T Consensus 379 ~tGGTiHiivNNQIGFTT~~p~d~RSs~YctDiAK~~~aPI~HVN~DdpEav~~a~~lA~~yR~~F~kDVvIDlvcYRR~ 458 (933)
T 2jgd_A 379 EVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp CCSCCEEEEEECC---------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred CCCCEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 55864899854877513798321335776205888727977896489989999999999999999688727855653146
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C
Q ss_conf 656435422355788888671899899999998644898989999999999999775666541258765666-------6
Q gi|254781051|r 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGL-------L 551 (957)
Q Consensus 479 GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~-------~ 551 (957)
||||+|||+||||+||++|++|||++++|+++|+++|+||+++++++.++|++.|+++++.++++.+....+ .
T Consensus 459 GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~eg~it~~e~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (933)
T 2jgd_A 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLN 538 (933)
T ss_dssp -----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSS
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88977787888976766654599889999998741687678999999999999999878887655522455444455678
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 56862666778999999998874368998620567788899899873343564211478988898863583157850100
Q gi|254781051|r 552 HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDC 631 (957)
Q Consensus 552 ~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~ 631 (957)
..+...++|||+.+.|++|+++++++|++|++||+|+|++++|++|++++.+|||||||+|||||||.||++||||||||
T Consensus 539 ~~~~~~~~Tgv~~~~L~~l~~~l~~~P~~f~~h~kv~ki~~~R~~~~~~~~~iDWa~AE~LAfgSLL~eG~~VRLSGQD~ 618 (933)
T 2jgd_A 539 HEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDS 618 (933)
T ss_dssp CCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 65555678877899999999998418844341056778999999985068876277899999999997697610025645
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf 22333230279997788844556344278984599982431111013432022113865311100002442454102256
Q gi|254781051|r 632 ERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711 (957)
Q Consensus 632 ~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiD 711 (957)
+||||||||||||||+|+++|+||+||+++|++|+||||+|||+||||||||||+++|++|||||||||||+||||||||
T Consensus 619 ~RGTFShRHavl~Dq~t~~~y~PL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~LviWEAQFGDF~NgAQviiD 698 (933)
T 2jgd_A 619 GRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 (933)
T ss_dssp TTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 66543323136760577734753101666788738874622166665655221336873130234453244454234355
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 55420257623336813543688888887656440578875214378269724889999999999743534886898566
Q gi|254781051|r 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAP 791 (957)
Q Consensus 712 qfiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tP 791 (957)
|||||||+||+|+|||||||||||||||||||||||||||||||++|||||||||||||||+|||||+|+||||||||||
T Consensus 699 qfi~sge~KW~~~sglvllLPHGyeGqGPEHSSaR~ERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tP 778 (933)
T 2jgd_A 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSP 778 (933)
T ss_dssp HTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEEC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 56421777756457758973788888897655402889999754268589746975999999999851457888699685
Q ss_pred CHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 02210801268878937998603515776433444544457954576899868857899999999769986899984014
Q gi|254781051|r 792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQL 871 (957)
Q Consensus 792 KsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqL 871 (957)
|||||||.|+|+|+||++|| |++||+|+. ..+|++|||||||||||||||+++|++++.+||||||||||
T Consensus 779 KsLLR~~~a~S~l~e~~~g~-F~~vi~d~~---------~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEQL 848 (933)
T 2jgd_A 779 KSLLRHPLAVSSLEELANGT-FLPAIGEID---------ELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQL 848 (933)
T ss_dssp SGGGGCTTCCBCHHHHHHCC-CCSEECCCS---------CCCGGGCCEEEEECTTHHHHHHHHHHHTTCCSEEEEEECEE
T ss_pred HHHHCCCCCCCCHHHHCCCC-CEEECCCCC---------CCCHHCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 67655865579989917996-156368756---------57851198899907799999999999779998799985004
Q ss_pred CCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 868289999998537998-3998067853178457899769999875056776018975366467233867899999999
Q gi|254781051|r 872 YPFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950 (957)
Q Consensus 872 yPfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~ 950 (957)
||||+++|+++|++|||+ |||||||||+|||||+||+|||++++. ...+++|||||++||||||+.++|++||++
T Consensus 849 yPfP~~~l~~~l~~y~n~~~~vW~QEEp~N~GaW~~v~~rl~~~~~----~~~~l~yvgR~~~aspA~G~~~~H~~eq~~ 924 (933)
T 2jgd_A 849 YPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIP----FGASLRYAGRPASASPAVGHMSVHQKQQQD 924 (933)
T ss_dssp ESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSC----TTCEEEEEEECCCSSSSCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8998899999998589998589962465646768779999999853----699537858888788877798999999999
Q ss_pred HHHHHHC
Q ss_conf 9998719
Q gi|254781051|r 951 FIEDALK 957 (957)
Q Consensus 951 li~~a~~ 957 (957)
||++||.
T Consensus 925 i~~~a~~ 931 (933)
T 2jgd_A 925 LVNDALN 931 (933)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 9999858
|
| >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* | Back alignment and structure |
|---|
| >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A | Back alignment and structure |
|---|
| >1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* | Back alignment and structure |
|---|
| >2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* | Back alignment and structure |
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| >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... | Back alignment and structure |
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| >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 | Back alignment and structure |
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| >2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... | Back alignment and structure |
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| >2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} | Back alignment and structure |
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| >1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* | Back alignment and structure |
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| >1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* | Back alignment and structure |
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| >2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B | Back alignment and structure |
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| >1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B | Back alignment and structure |
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| >2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} | Back alignment and structure |
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| >2e6k_A Transketolase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.09A {Thermus thermophilus HB8} | Back alignment and structure |
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| >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* | Back alignment and structure |
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| >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* | Back alignment and structure |
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