HHsearch alignment for GI: 254781051 and conserved domain: PRK05444
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=98.60 E-value=0.00014 Score=54.32 Aligned_cols=421 Identities=19% Similarity=0.257 Sum_probs=222.1
Q ss_pred CCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 73100044553236777764166654455565445404788862575333467258876451067744365799984160
Q gi|254781051|r 333 SHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ 412 (957)
Q Consensus 333 SHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ 412 (957)
T Consensus 117 G~~g~gls~a~G~A~a~~l~~~------------~~~v~~~~--GDG~l~-eGis~EA~s~Ag~--~~-~~liii~~DN~ 178 (576)
T PRK05444 117 GHSSTSISAALGMAKARDLKGE------------DRKVVAVI--GDGALT-GGMAFEALNNAGD--LK-SDLIVILNDNE 178 (576)
T ss_pred CCCCCHHHHHHHHHHHHHHCCC------------CCEEEEEE--CCHHHC-CHHHHHHHHHHHH--CC-CCEEEEEECCC
T ss_conf 8762178899999999984699------------95499998--140103-3148999975553--38-87699997798
Q ss_pred EECCCCCHHCCCCCCCCHHHHHHCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCCCCCCC
Q ss_conf 2012470102467784001122034058-742678899999999999999973897399864211256--5643542235
Q gi|254781051|r 413 IGFTTNPSSARSCTYASDISKSIGIPIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFG--HNEGDEPSFT 489 (957)
Q Consensus 413 IGFTT~p~d~RSs~Y~TDiAK~i~aPI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~G--HNE~DeP~fT 489 (957)
T Consensus 179 isI~~~v-g~---~~~~~~Fea~Gw~~i~~iDGhd~~~i~~al~~ak----~~~~P~lI~~kT~~G~G~~~~e~~----- 245 (576)
T PRK05444 179 MSISPNV-GA---LSNYTLFEELGFKYIGPIDGHDLDALVETLKNAK----DLKGPVLLHVVTKKGKGYAPAEAD----- 245 (576)
T ss_pred CCCCCCC-CC---CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCCCCCHHCC-----
T ss_conf 2007886-54---3310178980994868658989999999999888----669998999997056677812205-----
Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 57888886718998999999986448989899999999999997756665412587656666568626667789999999
Q gi|254781051|r 490 QPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILKK 569 (957)
Q Consensus 490 QP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~ 569 (957)
T Consensus 246 -~~~~-----Hg~~------------~f~~~~~~--------------~~~~~~~~-----------~~-~~~f~~~L~~ 281 (576)
T PRK05444 246 -PIKY-----HGVG------------KFDPETGK--------------QPKKPGKP-----------SY-TKVFGETLCE 281 (576)
T ss_pred -HHHC-----CCCC------------CCCHHHCC--------------CCCCCCCC-----------CH-HHHHHHHHHH
T ss_conf -1222-----5668------------87944343--------------46776650-----------69-9999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCC
Q ss_conf 98874368998620567788899899873343564211478988898863583157850100223332302799977888
Q gi|254781051|r 570 IGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETG 649 (957)
Q Consensus 570 i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~ 649 (957)
T Consensus 282 l~~~---------------------------~~~iv~ita-a~~~~t-----------~----l~~f~~----------- 307 (576)
T PRK05444 282 LAEK---------------------------DPKIVAITA-AMPEGT-----------G----LDEFSK----------- 307 (576)
T ss_pred HHHH---------------------------CCCCCEEHH-HCCCCC-----------C----CCHHHH-----------
T ss_conf 9874---------------------------302003054-214786-----------6----443677-----------
Q ss_pred CEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 44556344278984599982431111013432022113865311100002442454102256554202576233368135
Q gi|254781051|r 650 KRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVC 729 (957)
Q Consensus 650 ~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvl 729 (957)
T Consensus 308 --------~~P--~R~--~~~GIaEqhav~~aaGlA~~---G~~Pf~~~~stFl~---Ra~dQi~~d~a---l~~l~V~~ 366 (576)
T PRK05444 308 --------RFP--DRY--FDVGIAEQHAVTFAAGLATE---GLKPVVAIYSTFLQ---RAYDQVIHDVA---LQNLPVTF 366 (576)
T ss_pred --------HCC--CCE--EECCCHHHHHHHHHHHHHHC---CCCCEEEEECHHHH---HHHHHHHHHHH---HCCCCEEE
T ss_conf --------587--634--11574577799997458656---99866888212877---76999987654---12797689
Q ss_pred ECCC-CCCC-CCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHH
Q ss_conf 4368-8888-8876564405788752143782697248899999999997435348868985660221080126887893
Q gi|254781051|r 730 LLPH-GYEG-QGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDM 807 (957)
Q Consensus 730 lLPH-GyeG-qGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~ 807 (957)
T Consensus 367 v~d~~GlvGeDGpTHq~--iedla~lR~iPnl~V~~PaD~~E~~~~~~~Al~-~~~gP~~irl~R~~~~~-~~~~~~~~~ 442 (576)
T PRK05444 367 AIDRAGLVGADGPTHQG--AFDLSYLRCIPNMVIMAPSDENELRQMLYTALA-YDDGPTAIRYPRGSGVG-VELPELEPL 442 (576)
T ss_pred EEECCCCCCCCCCCCCC--HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCC-CCCCCCCCC
T ss_conf 96078667899851003--799998526998189962999999999999985-78998899942788888-787765434
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 79986035157764334445444579545768998688578999999997699--8689998401486828999999853
Q gi|254781051|r 808 TCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSR 885 (957)
Q Consensus 808 ~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~ 885 (957)
T Consensus 443 ~~Gk-~-~vl~~--------------G~--dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~~~ikPlD~e~l~~~~~~ 504 (576)
T PRK05444 443 PIGK-G-EVLRE--------------GS--DVAILAFGTMLAEALEAAERLAAEGISATVVDARFVKPLDEELLLELAAK 504 (576)
T ss_pred CCCE-E-EEEEC--------------CC--CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 4650-8-99962--------------89--78999538799999999999985699879995587788799999999954
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEEECC
Q ss_conf 79983998067853178457899769999875056-77601897536
Q gi|254781051|r 886 FVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGA-DYSRVRYVGRL 931 (957)
Q Consensus 886 y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~-~~~~~~y~gR~ 931 (957)
T Consensus 505 ~~---~ivtvEeh~~~GGlGs---~v~e~l~~~g~~~~~~~~~iGi~ 545 (576)
T PRK05444 505 HE---LLVTVEENAIMGGFGS---AVLEFLAEHGLLKPVKVLNLGLP 545 (576)
T ss_pred CC---EEEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 89---7999938975765899---99999997599779746999848