HHsearch alignment for GI: 254781051 and conserved domain: PRK12571
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=97.58 E-value=0.011 Score=39.95 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=140.2
Q ss_pred EECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH-HHHHHCCCCCCEEECCCC-C-CCCCCCCCC
Q ss_conf 8243111101343202211386531110000244245410225655420-257623336813543688-8-888876564
Q gi|254781051|r 668 VNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITA-GEQKWLCTSNLVCLLPHG-Y-EGQGPEHSS 744 (957)
Q Consensus 668 ~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss-~e~KW~~~sglvllLPHG-y-eGqGPEHSS 744 (957)
T Consensus 364 ~~~GIrE~~m~a~a~GlA~---~G~~P~~~tf~~F~---~ra~~qi~~~~al----~~lpv~~v~~~~GlvGeDGpTHq~ 433 (642)
T PRK12571 364 FDVGIAEQHAVTFAAGLAA---AGLKPFCAIYSTFL---QRGYDQVLHDVAL----QKLPVRFVIDRAGLVGADGATHAG 433 (642)
T ss_pred CCCCHHHHHHHHHHHHHHH---CCCCEEEEEECCHH---HHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 5524556789999634764---69962899967445---5437887632551----598669999667324799876424
Q ss_pred CCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCC
Q ss_conf 40578875214378269724889999999999743534886898566022108012688789379986035157764334
Q gi|254781051|r 745 ARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYH 824 (957)
Q Consensus 745 aRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~ 824 (957)
T Consensus 434 --iedla~lR~iPnl~V~~PaD~~E~~~a~~~al~~-~~gP~~i~l~R~~~~~~~~~~~~~~~~~g-~-~~~~~~g---- 504 (642)
T PRK12571 434 --MFDMAFLTCLPNLRVMAPADEAELRHMLRTAVAH-DDGPIAVRYPRGEGVGVEIPAVGRVLGIG-K-GRVPREG---- 504 (642)
T ss_pred --HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCC-E-EEEECCC----
T ss_conf --3778875479981899129999999999999866-89988999527878887766421113564-3-8994279----
Q ss_pred CCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 445444579545768998688578999999997699--868999840148682899999985379983998067853178
Q gi|254781051|r 825 GKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMG 902 (957)
Q Consensus 825 ~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~G 902 (957)
T Consensus 505 -----------~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~Vv~~~~~kp~D~~~~~~~~~~~---~~vv~~E~~~~-g 569 (642)
T PRK12571 505 -----------RPDVAILSVGAHLHECLEAAELLEAEGISVTVADARFVKPLDEALIAQLARRH---RVLVTVEDGAM-G 569 (642)
T ss_pred -----------CCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC---CEEEEEECCCC-C
T ss_conf -----------99989998609999999999999866998699816737877999999997009---88999907851-2
Q ss_pred CH-HHHHHHHHHHHHHCCC--CCCEEEEEECC
Q ss_conf 45-7899769999875056--77601897536
Q gi|254781051|r 903 AW-TFIEPYLEKVLHSIGA--DYSRVRYVGRL 931 (957)
Q Consensus 903 aW-~~v~~rl~~~l~~~~~--~~~~~~y~gR~ 931 (957)
T Consensus 570 G~g~~v~~~~~~----~g~~~~~~~~~~~Gi~ 597 (642)
T PRK12571 570 GFGAHVLHHLAD----AGLLDGGLKLRTLGLP 597 (642)
T ss_pred CHHHHHHHHHHH----CCCCCCCCEEEEEECC
T ss_conf 389999999997----4987789738998358