HHsearch alignment for GI: 254781051 and conserved domain: TIGR03181
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88 E-value=8.8e-19 Score=161.76 Aligned_cols=295 Identities=15% Similarity=0.160 Sum_probs=233.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE---ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf 7788879889999999999999899999864033622---2256465899999999999873791079980676552689
Q gi|254781051|r 201 DFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKR---FGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV 277 (957)
Q Consensus 201 ~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KR---FsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNV 277 (957)
T Consensus 16 ~~~~~ls~e~ll~~yr~M~~~R~~e~~~~~l~~~G~ig~~~~~~GqEA~avg~------~~aL~~~D~i~-~~yR~hg~~ 88 (341)
T TIGR03181 16 EPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGS------ALALRKDDWVF-PSYRDHAAM 88 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH------HHHCCCCCEEE-ECCCCHHHH
T ss_conf 77899899999999999999999999999999679865767999739999999------97589879897-156723633
Q ss_pred HHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99885379899999855887432234555100150268898359618999717877310004455323677776416665
Q gi|254781051|r 278 LSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIV 357 (957)
Q Consensus 278 L~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~ 357 (957)
T Consensus 89 la~--G~~~~~~~ae~~G~~~G~---~~~-----------------~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~~-- 144 (341)
T TIGR03181 89 LAR--GVPLVEILLYWRGDERGS---WDP-----------------EGVNILPPNIPIGTQYLHAAGVAYALKLRGED-- 144 (341)
T ss_pred EEC--CCCHHHHHHHHCCCCCCC---CCC-----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--
T ss_conf 127--998999999855977678---886-----------------01476888740134654147788899872999--
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCC
Q ss_conf 44555654454047888625753334672588764510677443657999841602012470102467784001122034
Q gi|254781051|r 358 GEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI 437 (957)
Q Consensus 358 ~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~a 437 (957)
T Consensus 145 ------------~V~v~ffGDGA~~-eG~fhEalN~Aa~~~LP---viFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi 208 (341)
T TIGR03181 145 ------------NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP---VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGI 208 (341)
T ss_pred ------------CEEEEEECCCCCC-CCHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCC
T ss_conf ------------8899994688643-24699999999983899---8999961773577763342377369875142498
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 05874267889999999999999997389739986421125656435422-35578888867189989999999864489
Q gi|254781051|r 438 PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS-FTQPMMYKTIRSHKSVLQLYADSLMKNQV 516 (957)
Q Consensus 438 PI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~-fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~ 516 (957)
T Consensus 209 ~~~~vDG~D~~av~~a~~~Av~~~R~g~gP~liE~~TyR~~gHs~~Dd~~~YR~~~E~~~w~~~-DPi~~~~~~L~~~g~ 287 (341)
T TIGR03181 209 PGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKK-DPILRLRKYLERKGL 287 (341)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHCCC
T ss_conf 8674488567999999999999985589988999985027886788998778898999998858-949999999998799
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 898999999999999977566654125
Q gi|254781051|r 517 ISKQELQSLANNWHKYLEAEYKESESY 543 (957)
Q Consensus 517 it~~e~~~~~~~~~~~l~~~~~~~k~~ 543 (957)
T Consensus 288 ~~e~e~~~i~~~i~~ev~~a~~~A~~s 314 (341)
T TIGR03181 288 WDEEQEEALEEEAEAEVAEAVAEALAL 314 (341)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999968