HHsearch alignment for GI: 254781051 and conserved domain: TIGR03181

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88  E-value=8.8e-19  Score=161.76  Aligned_cols=295  Identities=15%  Similarity=0.160  Sum_probs=233.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE---ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf             7788879889999999999999899999864033622---2256465899999999999873791079980676552689
Q gi|254781051|r  201 DFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKR---FGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV  277 (957)
Q Consensus       201 ~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KR---FsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNV  277 (957)
T Consensus        16 ~~~~~ls~e~ll~~yr~M~~~R~~e~~~~~l~~~G~ig~~~~~~GqEA~avg~------~~aL~~~D~i~-~~yR~hg~~   88 (341)
T TIGR03181        16 EPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGS------ALALRKDDWVF-PSYRDHAAM   88 (341)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH------HHHCCCCCEEE-ECCCCHHHH
T ss_conf             77899899999999999999999999999999679865767999739999999------97589879897-156723633


Q ss_pred             HHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99885379899999855887432234555100150268898359618999717877310004455323677776416665
Q gi|254781051|r  278 LSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIV  357 (957)
Q Consensus       278 L~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~  357 (957)
T Consensus        89 la~--G~~~~~~~ae~~G~~~G~---~~~-----------------~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~~--  144 (341)
T TIGR03181        89 LAR--GVPLVEILLYWRGDERGS---WDP-----------------EGVNILPPNIPIGTQYLHAAGVAYALKLRGED--  144 (341)
T ss_pred             EEC--CCCHHHHHHHHCCCCCCC---CCC-----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--
T ss_conf             127--998999999855977678---886-----------------01476888740134654147788899872999--


Q ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCC
Q ss_conf             44555654454047888625753334672588764510677443657999841602012470102467784001122034
Q gi|254781051|r  358 GEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI  437 (957)
Q Consensus       358 ~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~a  437 (957)
T Consensus       145 ------------~V~v~ffGDGA~~-eG~fhEalN~Aa~~~LP---viFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi  208 (341)
T TIGR03181       145 ------------NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP---VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGI  208 (341)
T ss_pred             ------------CEEEEEECCCCCC-CCHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCC
T ss_conf             ------------8899994688643-24699999999983899---8999961773577763342377369875142498


Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             05874267889999999999999997389739986421125656435422-35578888867189989999999864489
Q gi|254781051|r  438 PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS-FTQPMMYKTIRSHKSVLQLYADSLMKNQV  516 (957)
Q Consensus       438 PI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~-fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~  516 (957)
T Consensus       209 ~~~~vDG~D~~av~~a~~~Av~~~R~g~gP~liE~~TyR~~gHs~~Dd~~~YR~~~E~~~w~~~-DPi~~~~~~L~~~g~  287 (341)
T TIGR03181       209 PGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKK-DPILRLRKYLERKGL  287 (341)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHCCC
T ss_conf             8674488567999999999999985589988999985027886788998778898999998858-949999999998799


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             898999999999999977566654125
Q gi|254781051|r  517 ISKQELQSLANNWHKYLEAEYKESESY  543 (957)
Q Consensus       517 it~~e~~~~~~~~~~~l~~~~~~~k~~  543 (957)
T Consensus       288 ~~e~e~~~i~~~i~~ev~~a~~~A~~s  314 (341)
T TIGR03181       288 WDEEQEEALEEEAEAEVAEAVAEALAL  314 (341)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999968