HHsearch alignment for GI: 254781051 and conserved domain: cd02007
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=97.09 E-value=0.0075 Score=41.27 Aligned_cols=113 Identities=20% Similarity=0.403 Sum_probs=79.1
Q ss_pred CCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 77310004455323677776416665445556544540478886257533346725887645106774436579998416
Q gi|254781051|r 332 PSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINN 411 (957)
Q Consensus 332 PSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNN 411 (957)
T Consensus 74 tGsLG~Gls~a~G~Ala~k~~~------------~~~~v~~l~--GDGEl~-EG~~wEA~~~A~~--~~-~nli~iid~N 135 (195)
T cd02007 74 TGHSSTSISAALGMAVARDLKG------------KKRKVIAVI--GDGALT-GGMAFEALNNAGY--LK-SNMIVILNDN 135 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC------------CCCEEEEEE--CCCHHH-HHHHHHHHHHHHH--CC-CCEEEEEECC
T ss_conf 8646889999999999995679------------998499997--781140-1899999999765--18-9869999679
Q ss_pred CEECCCCCHHCCCCCCCCHHHHHHCCCEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 020124701024677840011220340587-4267889999999999999997389739986
Q gi|254781051|r 412 QIGFTTNPSSARSCTYASDISKSIGIPIFH-VNGDDPEAVIRVVRMAVSFRMKFHKSVVIDI 472 (957)
Q Consensus 412 QIGFTT~p~d~RSs~Y~TDiAK~i~aPI~H-VN~DdpEav~~~~~lA~~yR~~F~kDVvIDl 472 (957)
T Consensus 136 ~~~i~~~~~~------~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~----~~~~P~~Iia 187 (195)
T cd02007 136 EMSISPNVGT------PGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHV 187 (195)
T ss_pred CEEECCCCCC------CCCHHHHCCCCEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEE
T ss_conf 8761488666------42368774886778607899999999999986----2899989999