Query         gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 957
No_of_seqs    189 out of 1404
Neff          4.9 
Searched_HMMs 39220
Date          Mon May 30 06:02:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781051.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09404 kgd alpha-ketoglutara 100.0       0       0 3148.4  91.8  919    2-957     1-930 (931)
  2 PRK12270 kgd alpha-ketoglutara 100.0       0       0 3043.7  90.6  838   93-957   386-1233(1234)
  3 KOG0450 consensus              100.0       0       0 2749.6  75.3  918   11-957    47-1012(1017)
  4 COG0567 SucA 2-oxoglutarate de 100.0       0       0 2708.0  71.0  897    6-957     1-905 (906)
  5 KOG0451 consensus              100.0       0       0 2190.4  53.4  835   98-957    53-913 (913)
  6 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0       0       0 1717.5  57.0  924   14-956     1-990 (990)
  7 cd02016 TPP_E1_OGDC_like Thiam 100.0       0       0 1047.6  24.4  262  224-494     1-265 (265)
  8 pfam00676 E1_dh Dehydrogenase  100.0   7E-27 1.8E-31  223.0  27.6  291  218-544     3-298 (303)
  9 TIGR03182 PDH_E1_alph_y pyruva  99.9 2.9E-19 7.3E-24  165.5  29.6  296  208-542     1-300 (315)
 10 cd02000 TPP_E1_PDC_ADC_BCADC T  99.9 2.4E-19 6.1E-24  166.0  27.8  287  214-539     1-292 (293)
 11 CHL00149 odpA pyruvate dehydro  99.9 4.2E-19 1.1E-23  164.2  28.8  314  198-543    11-328 (343)
 12 TIGR03181 PDH_E1_alph_x pyruva  99.9 8.8E-19 2.2E-23  161.8  28.2  295  201-543    16-314 (341)
 13 COG1071 AcoA Pyruvate/2-oxoglu  99.8 9.6E-15 2.4E-19  131.2  27.9  312  204-552    22-339 (358)
 14 pfam02779 Transket_pyr Transke  99.7 2.3E-16 5.8E-21  143.5  11.3  171  603-796     2-173 (174)
 15 KOG0225 consensus               99.6 2.7E-12 6.9E-17  112.7  22.7  303  196-544    45-357 (394)
 16 smart00861 Transket_pyr Transk  99.4 2.3E-12   6E-17  113.2   9.3  164  606-793     2-168 (168)
 17 PRK12315 1-deoxy-D-xylulose-5-  99.2 7.9E-07   2E-11   71.3  30.5  409  333-911   113-536 (581)
 18 PRK11892 pyruvate dehydrogenas  99.2 1.3E-08 3.4E-13   84.8  21.2  296  613-955   151-458 (464)
 19 PTZ00182 3-methyl-2-oxobutanat  99.2 8.7E-09 2.2E-13   86.2  20.0  308  577-937    13-333 (355)
 20 CHL00144 odpB pyruvate dehydro  99.2 1.5E-08 3.8E-13   84.4  20.6  294  613-954    13-318 (326)
 21 PRK09212 pyruvate dehydrogenas  99.1 7.1E-08 1.8E-12   79.3  21.2  300  607-955     7-319 (327)
 22 cd07036 TPP_PYR_E1-PDHc-beta_l  98.9   2E-08 5.1E-13   83.4   9.2  156  611-792     4-167 (167)
 23 COG0022 AcoB Pyruvate/2-oxoglu  98.7 1.1E-05 2.8E-10   62.7  19.2  265  611-918     9-283 (324)
 24 PRK05444 1-deoxy-D-xylulose-5-  98.6 0.00014 3.6E-09   54.3  29.9  421  333-931   117-545 (576)
 25 KOG1182 consensus               97.7  0.0039 9.9E-08   43.4  14.2  335  203-582    80-426 (432)
 26 PRK12571 1-deoxy-D-xylulose-5-  97.6   0.011 2.9E-07   40.0  26.4  226  668-931   364-597 (642)
 27 cd02012 TPP_TK Thiamine pyroph  97.5  0.0011 2.8E-08   47.6   9.5  123  338-480   110-232 (255)
 28 KOG0525 consensus               97.3  0.0019 4.8E-08   45.8   7.8  246  623-910    60-314 (362)
 29 cd07033 TPP_PYR_DXS_TK_like Py  97.2  0.0045 1.2E-07   42.9   9.4  145  615-792     8-156 (156)
 30 cd02007 TPP_DXS Thiamine pyrop  97.1  0.0075 1.9E-07   41.3   9.5  113  332-472    74-187 (195)
 31 cd02006 TPP_Gcl Thiamine pyrop  96.9   0.017 4.4E-07   38.5   9.7  166  285-477     9-196 (202)
 32 PRK08659 2-oxoglutarate ferred  96.7   0.043 1.1E-06   35.5  11.0   90  837-934   274-365 (377)
 33 cd00568 TPP_enzymes Thiamine p  96.7    0.01 2.6E-07   40.3   7.7  146  298-473    11-167 (168)
 34 cd02002 TPP_BFDC Thiamine pyro  96.6   0.024 6.2E-07   37.4   8.8  157  285-473     2-177 (178)
 35 cd02013 TPP_Xsc_like Thiamine   96.5   0.032 8.2E-07   36.5   8.8  173  285-493     5-191 (196)
 36 PRK11269 glyoxylate carboligas  96.5   0.017 4.3E-07   38.6   7.3  165  286-477   372-558 (591)
 37 cd02005 TPP_PDC_IPDC Thiamine   96.4   0.035   9E-07   36.2   8.9  159  286-475     4-174 (183)
 38 TIGR03336 IOR_alpha indolepyru  96.2    0.09 2.3E-06   33.1   9.9  158  246-474     4-163 (595)
 39 cd02004 TPP_BZL_OCoD_HPCL Thia  96.0   0.056 1.4E-06   34.6   8.0  156  286-474     1-171 (172)
 40 pfam02775 TPP_enzyme_C Thiamin  95.9    0.06 1.5E-06   34.5   7.8  110  333-472    28-150 (150)
 41 PRK07119 2-ketoisovalerate fer  95.6     0.1 2.6E-06   32.7   7.9   61  837-902   246-308 (350)
 42 cd02015 TPP_AHAS Thiamine pyro  95.5    0.18 4.6E-06   30.8   9.1  156  285-476     2-175 (186)
 43 PRK06112 acetolactate synthase  95.4   0.055 1.4E-06   34.7   6.1   38  431-474   525-562 (581)
 44 PRK08273 pyruvate decarboxylas  95.4    0.25 6.4E-06   29.7   9.4  204  285-537   367-591 (597)
 45 cd02003 TPP_IolD Thiamine pyro  95.3    0.29 7.3E-06   29.3   9.5  157  287-475     2-184 (205)
 46 cd02014 TPP_POX Thiamine pyrop  95.1    0.24 6.2E-06   29.8   8.5  158  285-474     3-172 (178)
 47 cd02010 TPP_ALS Thiamine pyrop  95.0    0.26 6.6E-06   29.6   8.7  156  286-475     1-170 (177)
 48 KOG0523 consensus               94.8    0.38 9.7E-06   28.3   8.9  412  340-881   125-552 (632)
 49 PRK09627 oorA 2-oxoglutarate-a  94.5   0.094 2.4E-06   32.9   5.3   89  837-934   275-365 (375)
 50 COG0674 PorA Pyruvate:ferredox  94.2    0.13 3.3E-06   31.9   5.5   93  835-934   255-351 (365)
 51 PRK05899 transketolase; Review  94.0    0.58 1.5E-05   27.0  31.5  457  339-902   124-615 (661)
 52 PRK07525 sulfoacetaldehyde ace  93.9    0.38 9.8E-06   28.3   7.4   39  750-788   518-558 (589)
 53 PRK06154 hypothetical protein;  93.9     0.3 7.6E-06   29.2   6.8   24  246-270    11-34  (556)
 54 COG0028 IlvB Thiamine pyrophos  93.7    0.12 3.1E-06   32.1   4.6  162  285-477   360-533 (550)
 55 TIGR03457 sulphoacet_xsc sulfo  93.4     0.4   1E-05   28.2   6.8   15  763-777   526-540 (579)
 56 COG4231 Indolepyruvate ferredo  93.3    0.75 1.9E-05   26.1   9.7  211  401-632   108-332 (640)
 57 cd02008 TPP_IOR_alpha Thiamine  93.1    0.49 1.2E-05   27.6   6.8  157  265-472     6-174 (178)
 58 PRK08199 acetolactate synthase  92.8    0.83 2.1E-05   25.8   7.7   19  251-270     6-24  (553)
 59 TIGR03393 indolpyr_decarb indo  92.6    0.71 1.8E-05   26.3   7.0   23  446-472   141-163 (539)
 60 PRK05858 hypothetical protein;  92.4    0.94 2.4E-05   25.4   7.5   41  598-642   210-252 (543)
 61 PRK06882 acetolactate synthase  92.1    0.55 1.4E-05   27.2   6.0   45  593-641   206-252 (574)
 62 cd03371 TPP_PpyrDC Thiamine py  91.8     1.1 2.9E-05   24.8   9.1  109  337-475    52-163 (188)
 63 PRK09259 putative oxalyl-CoA d  91.4    0.57 1.5E-05   27.0   5.5   37  750-788   508-544 (572)
 64 PRK07064 hypothetical protein;  91.4    0.88 2.2E-05   25.6   6.5   20  758-777   495-514 (544)
 65 PRK06276 acetolactate synthase  91.4    0.58 1.5E-05   27.0   5.5  113  333-475   419-543 (586)
 66 PRK08366 vorA 2-ketoisovalerat  91.3     1.3 3.3E-05   24.3   8.6   79  837-918   264-344 (394)
 67 PRK07449 2-succinyl-6-hydroxy-  91.2     1.3 3.3E-05   24.3   8.0   20  251-271    13-32  (548)
 68 cd00956 Transaldolase_FSA Tran  91.1       1 2.6E-05   25.1   6.5  100  414-517    23-139 (211)
 69 TIGR03394 indol_phenyl_DC indo  90.7    0.93 2.4E-05   25.4   6.0   25  445-473   139-163 (535)
 70 PRK09124 pyruvate dehydrogenas  90.6    0.38 9.7E-06   28.4   4.0   37  749-787   488-524 (574)
 71 PRK08979 acetolactate synthase  90.6    0.56 1.4E-05   27.1   4.8   15  762-776   516-530 (572)
 72 PRK08327 acetolactate synthase  90.4     1.5 3.9E-05   23.8   8.0   14  251-264    11-24  (568)
 73 PRK08617 acetolactate synthase  90.4    0.57 1.4E-05   27.0   4.7   15  764-778   364-378 (552)
 74 TIGR00553 pabB para-aminobenzo  90.4   0.081 2.1E-06   33.4   0.4   35  145-179   268-306 (368)
 75 PRK09107 acetolactate synthase  90.3    0.67 1.7E-05   26.5   5.0   38  749-788   511-548 (594)
 76 PRK06456 acetolactate synthase  90.2       1 2.6E-05   25.1   5.9   45  593-641   207-253 (572)
 77 cd02001 TPP_ComE_PpyrDC Thiami  90.2     1.6   4E-05   23.7   7.5  104  337-474    46-154 (157)
 78 PRK06546 pyruvate dehydrogenas  89.7    0.99 2.5E-05   25.2   5.5   71  430-517   491-561 (578)
 79 PRK01362 putative translaldola  89.6     1.8 4.5E-05   23.3   6.7   58  414-475    24-87  (214)
 80 PRK06725 acetolactate synthase  89.3     1.2 3.1E-05   24.5   5.7   46  593-642   214-261 (570)
 81 PRK09622 porA pyruvate flavodo  88.7       2 5.1E-05   22.9   9.4   81  835-919   266-349 (407)
 82 TIGR03254 oxalate_oxc oxalyl-C  87.7     1.8 4.5E-05   23.3   5.7   25  752-776   499-523 (554)
 83 PRK08367 porA pyruvate ferredo  87.6     2.3 5.9E-05   22.4   8.7   80  836-918   261-342 (395)
 84 cd03375 TPP_OGFOR Thiamine pyr  87.4     2.4   6E-05   22.4   8.0  160  267-473     3-182 (193)
 85 PRK08978 acetolactate synthase  87.2       2 5.1E-05   22.9   5.7   28  445-472   129-157 (548)
 86 PRK07710 acetolactate synthase  87.0     2.5 6.4E-05   22.2   6.4   24  246-270    15-38  (571)
 87 PRK12656 fructose-6-phosphate   85.5     2.2 5.7E-05   22.6   5.2   58  414-474    24-90  (222)
 88 PRK06965 acetolactate synthase  85.4       3 7.6E-05   21.6   5.8   62  749-811   519-584 (587)
 89 PRK12474 hypothetical protein;  84.8     3.2 8.1E-05   21.4   8.8   19  251-270     9-27  (518)
 90 CHL00099 ilvB acetohydroxyacid  84.2     2.2 5.6E-05   22.6   4.7   38  749-788   509-546 (588)
 91 KOG1185 consensus               84.0     3.4 8.6E-05   21.2   7.6  108  678-788   436-555 (571)
 92 PRK07789 acetolactate synthase  83.7     3.5 8.9E-05   21.1   7.5   72  749-821   533-608 (612)
 93 PRK12376 putative translaldola  82.5     2.5 6.3E-05   22.2   4.4   59  413-475    30-96  (238)
 94 PRK06466 acetolactate synthase  82.5     3.8 9.8E-05   20.8   5.4   19  251-270     8-26  (574)
 95 pfam10237 N6-adenineMlase Prob  82.5     2.8 7.1E-05   21.8   4.7  104  746-855    14-133 (161)
 96 PRK08611 pyruvate oxidase; Pro  81.8     4.1  0.0001   20.6   5.7   38  749-788   488-525 (576)
 97 PRK12655 fructose-6-phosphate   81.0     3.5 8.8E-05   21.1   4.7   57  414-474    24-88  (220)
 98 cd03372 TPP_ComE Thiamine pyro  80.5     4.5 0.00011   20.3   8.5  113  337-489    46-165 (179)
 99 PRK13029 2-oxoacid ferredoxin   78.5     5.1 0.00013   19.8   9.2   62  846-915  1021-1095(1186)
100 cd06250 M14_PaAOTO_like An unc  78.4     5.2 0.00013   19.8   5.5  106  368-474    29-168 (359)
101 cd01987 USP_OKCHK USP domain i  78.1     5.3 0.00013   19.7   7.0   59  205-276    42-100 (124)
102 PRK06457 pyruvate dehydrogenas  77.9     5.3 0.00014   19.7   7.7   38  749-788   477-514 (549)
103 PRK07524 hypothetical protein;  77.3     5.5 0.00014   19.6   7.9   19  251-270     6-24  (534)
104 PRK13030 2-oxoacid ferredoxin   76.2     5.9 0.00015   19.4   9.7   45  655-700   814-858 (1168)
105 PRK09193 indolepyruvate ferred  75.3     6.2 0.00016   19.2   9.5   35  655-690   809-843 (1155)
106 cd02009 TPP_SHCHC_synthase Thi  74.9     6.3 0.00016   19.1   9.0  119  324-473    42-173 (175)
107 PRK07586 hypothetical protein;  73.5     6.8 0.00017   18.9   9.1   20  938-957   484-503 (514)
108 TIGR01824 PabB-clade2 para-ami  73.0     2.2 5.5E-05   22.7   1.8   41  140-180   272-317 (373)
109 COG0147 TrpE Anthranilate/para  72.9     1.1 2.9E-05   24.8   0.3   36  765-800   227-269 (462)
110 PRK06048 acetolactate synthase  71.9     7.3 0.00019   18.6   8.9   46  594-643   208-255 (562)
111 PTZ00089 transketolase; Provis  71.8     7.4 0.00019   18.6   7.8  118  340-471   123-245 (670)
112 PRK05940 anthranilate synthase  71.1     1.3 3.3E-05   24.3   0.3   76  243-326   189-269 (459)
113 PRK07508 para-aminobenzoate sy  71.0     1.2 3.1E-05   24.5   0.2   20   97-116    30-49  (377)
114 PRK07418 acetolactate synthase  70.6     7.8  0.0002   18.4   7.8   38  749-788   517-554 (615)
115 PRK13572 anthranilate synthase  70.5     1.7 4.2E-05   23.5   0.7   10  767-776   203-212 (430)
116 TIGR02351 thiH thiazole biosyn  70.1     2.6 6.6E-05   22.1   1.7  118    9-172   233-366 (378)
117 PRK13574 anthranilate synthase  69.9     1.6 4.1E-05   23.7   0.6   11  767-777   195-205 (422)
118 KOG1184 consensus               69.8     4.9 0.00012   20.0   3.0   80  444-529   192-280 (561)
119 COG3961 Pyruvate decarboxylase  69.7     5.1 0.00013   19.8   3.1   85  439-529   184-277 (557)
120 PRK07282 acetolactate synthase  68.3     8.7 0.00022   18.1   8.1   25  750-774   501-525 (566)
121 PRK13570 anthranilate synthase  67.2     1.9 4.9E-05   23.1   0.5   17  436-452   249-265 (454)
122 PRK13565 anthranilate synthase  67.1     2.4   6E-05   22.4   1.0   21  247-267   222-242 (490)
123 COG1590 Uncharacterized conser  66.1     6.2 0.00016   19.2   2.9   70  431-515    92-170 (208)
124 PRK09070 hypothetical protein;  65.4       2 5.2E-05   22.9   0.3   41  434-484   242-283 (451)
125 PRK07092 benzoylformate decarb  64.1      10 0.00026   17.5   8.8   32  246-278     2-33  (521)
126 PRK13571 anthranilate synthase  64.0       3 7.6E-05   21.6   1.0   23  245-267   231-253 (506)
127 PRK12653 fructose-6-phosphate   63.2      11 0.00027   17.4   5.1   57  414-474    24-88  (220)
128 PRK08155 acetolactate synthase  63.2      11 0.00027   17.4   8.9   26  237-270    10-35  (564)
129 PRK13569 anthranilate synthase  62.4     2.9 7.4E-05   21.7   0.7   24  245-268   232-255 (506)
130 PRK06404 anthranilate synthase  60.7     3.4 8.7E-05   21.2   0.8   87  230-326    91-182 (351)
131 TIGR00959 ffh signal recogniti  60.3     9.6 0.00024   17.8   3.0  144  431-589   154-343 (439)
132 PRK13564 anthranilate synthase  58.5     3.1 7.8E-05   21.5   0.2   25  244-268   244-268 (521)
133 COG2166 sufE Cysteine desulfur  58.5       4  0.0001   20.7   0.8   36  870-906    38-74  (144)
134 PRK13573 anthranilate synthase  57.1     3.3 8.4E-05   21.3   0.2   51  244-301   231-281 (503)
135 COG1091 RfbD dTDP-4-dehydrorha  56.8      14 0.00035   16.6   4.5  112  386-530   158-277 (281)
136 COG0499 SAM1 S-adenosylhomocys  56.2      11 0.00028   17.3   2.8   74  395-472    42-127 (420)
137 smart00604 MD MD domain.        55.3     6.8 0.00017   18.9   1.6   13  324-337    21-33  (145)
138 PRK06163 hypothetical protein;  54.0      15 0.00038   16.3   9.0  106  337-474    61-172 (202)
139 pfam11300 DUF3102 Protein of u  53.5      15 0.00039   16.3   3.6   68  100-171    58-129 (130)
140 pfam02256 Fe_hyd_SSU Iron hydr  53.0      12 0.00031   17.0   2.6   29    8-36     14-45  (60)
141 cd06230 M14_ASTE_ASPA_like The  52.1      14 0.00035   16.6   2.7   87  374-475     6-95  (252)
142 pfam00456 Transketolase_N Tran  51.4      16 0.00042   16.0  13.6  127  340-480   119-249 (333)
143 pfam08423 Rad51 Rad51. Rad51 i  51.1      16 0.00042   16.0   3.0   60  716-776    54-129 (261)
144 PRK07912 salicylate synthase M  51.0     7.8  0.0002   18.4   1.3   33  766-798   218-257 (449)
145 TIGR02730 carot_isom carotene   50.8     7.4 0.00019   18.6   1.2   21  370-390   471-491 (506)
146 TIGR01820 TrpE-arch anthranila  50.6     9.7 0.00025   17.7   1.8   34  146-179   411-448 (508)
147 TIGR01989 COQ6 Ubiquinone bios  50.5     4.9 0.00012   20.0   0.2   50  231-294   247-296 (481)
148 KOG4748 consensus               50.2      12  0.0003   17.1   2.1  156  453-624   127-297 (364)
149 TIGR02461 osmo_MPG_phos mannos  48.8      18 0.00045   15.7   3.7   87  155-241    95-204 (248)
150 TIGR02876 spore_yqfD sporulati  47.5     9.9 0.00025   17.7   1.4   22  743-764    14-35  (406)
151 KOG0182 consensus               46.8      14 0.00035   16.6   2.0   89  389-477    30-118 (246)
152 COG3737 Uncharacterized conser  46.6     6.9 0.00018   18.9   0.5   49  780-846    31-79  (127)
153 COG3914 Spy Predicted O-linked  46.2      12  0.0003   17.1   1.6   47  420-479   302-349 (620)
154 KOG4450 consensus               46.0     5.7 0.00014   19.5  -0.0   21  367-387    21-41  (168)
155 pfam01074 Glyco_hydro_38 Glyco  45.9      20  0.0005   15.4   6.4   69  709-779   188-258 (269)
156 KOG0630 consensus               45.1      11 0.00028   17.3   1.3   22  271-292   241-262 (838)
157 COG3394 Uncharacterized protei  44.3     6.2 0.00016   19.2  -0.0   13  187-199   134-146 (257)
158 TIGR02134 transald_staph trans  43.4     7.6 0.00019   18.5   0.3  115  385-530    12-134 (237)
159 KOG2243 consensus               43.2      12 0.00031   17.0   1.3   18  613-630  1059-1076(5019)
160 pfam03492 Methyltransf_7 SAM d  42.9      22 0.00055   15.1   5.4   67  440-525   137-221 (331)
161 TIGR00838 argH argininosuccina  42.8      22 0.00055   15.1   4.3   38  502-539    33-70  (469)
162 TIGR02743 TraW type-F conjugat  42.0      22 0.00057   15.0   3.2   33  185-217   143-177 (217)
163 TIGR02237 recomb_radB DNA repa  41.5      16 0.00042   16.0   1.8   20  747-766    54-82  (223)
164 PRK10696 C32 tRNA thiolase; Pr  41.5      11 0.00028   17.4   0.8  121  172-298    91-236 (311)
165 PTZ00124 adenosine deaminase;   41.1      23 0.00058   14.9  10.1   90  370-461   219-323 (362)
166 TIGR02470 sucr_synth sucrose s  40.2      18 0.00046   15.7   1.8  140  306-458   543-731 (790)
167 pfam05489 Phage_tail_X Phage T  40.1     2.9 7.5E-05   21.7  -2.2   14  469-482    10-23  (60)
168 COG0299 PurN Folate-dependent   39.3      24 0.00062   14.7   4.6  109  381-508     7-116 (200)
169 pfam02780 Transketolase_C Tran  39.1      24 0.00062   14.7  10.7   96  838-937    11-108 (124)
170 PRK10150 beta-D-glucuronidase;  39.1      25 0.00062   14.7   3.5   43  748-790   342-415 (605)
171 KOG1000 consensus               39.0      18 0.00046   15.7   1.6   22  746-767   584-605 (689)
172 pfam01855 POR_N domain. This f  38.6      25 0.00063   14.6   6.3  100  380-486    65-167 (230)
173 pfam05637 Glyco_transf_34 gala  37.6      25 0.00065   14.6   2.2   58  446-506    22-80  (242)
174 cd03415 CbiX_CbiC Archaeal sir  37.2      26 0.00067   14.5   3.8   35  445-487    11-45  (125)
175 COG5618 Predicted periplasmic   36.8      26 0.00067   14.4   5.6  109  579-715    43-156 (206)
176 cd06254 M14_ASTE_ASPA_like_4 A  36.6      27 0.00068   14.4   3.3   86  371-474    22-115 (288)
177 TIGR00936 ahcY adenosylhomocys  36.4      27 0.00068   14.4   3.8   79  393-471    36-127 (422)
178 PRK04235 hypothetical protein;  36.4      27 0.00068   14.4   3.1   72  431-515    92-170 (200)
179 PRK13559 hypothetical protein;  36.2      27 0.00069   14.4   4.2   58  418-480    74-131 (363)
180 pfam10109 FluMu_gp41 Mu-like p  36.0      27 0.00069   14.3   2.3   45  752-799    36-88  (105)
181 cd01854 YjeQ_engC YjeQ/EngC.    36.0      17 0.00044   15.9   1.1   70  738-811    89-162 (287)
182 PRK04081 hypothetical protein;  35.7       5 0.00013   19.9  -1.6   61  461-537    44-106 (212)
183 PRK05439 pantothenate kinase;   35.5      14 0.00035   16.6   0.6   64  560-623    95-166 (312)
184 TIGR01706 NAPA periplasmic nit  35.5      12 0.00031   17.0   0.3   32  609-640   433-477 (930)
185 cd04821 PA_M28_1_2 PA_M28_1_2:  35.4      22 0.00056   15.0   1.6   51  377-427    24-77  (157)
186 TIGR03494 salicyl_syn salicyla  35.3      13 0.00033   16.8   0.5   51  286-336     6-56  (425)
187 pfam02030 Lipoprotein_8 Hypoth  35.2      21 0.00052   15.3   1.5   35  372-408   267-301 (493)
188 TIGR02812 fadR_gamma fatty aci  35.1      22 0.00056   15.0   1.6   24  165-191   203-226 (275)
189 COG1162 Predicted GTPases [Gen  34.9      19 0.00049   15.5   1.3   70  738-811    90-165 (301)
190 PRK05301 pyrroloquinoline quin  34.5      29 0.00073   14.2   4.8   51  203-265    44-95  (375)
191 TIGR02114 coaB_strep phosphopa  34.5      25 0.00064   14.6   1.8   13  561-573   186-198 (253)
192 cd04814 PA_M28_1 PA_M28_1: Pro  34.5      20 0.00051   15.3   1.3   41  378-418    23-63  (142)
193 cd02524 G1P_cytidylyltransfera  34.4      29 0.00073   14.2   2.8   28  248-275    30-57  (253)
194 TIGR00564 trpE_most anthranila  34.1      22 0.00057   15.0   1.5   40  140-179   426-470 (543)
195 TIGR01418 PEP_synth phosphoeno  33.9      13 0.00033   16.8   0.2   25  440-464   543-572 (877)
196 pfam05221 AdoHcyase S-adenosyl  33.9      29 0.00074   14.1   2.6   36  436-471    92-127 (430)
197 PRK06772 salicylate synthase I  33.8      19 0.00048   15.6   1.1   35  561-595   262-296 (434)
198 KOG2414 consensus               33.4      26 0.00065   14.5   1.7   59  402-460   292-356 (488)
199 cd01316 CAD_DHOase The eukaryo  33.3      30 0.00076   14.0   2.7   13  238-250   240-252 (344)
200 PTZ00186 heat shock 70 kDa pre  33.3      28 0.00072   14.2   1.9   36  251-286   341-381 (657)
201 COG3250 LacZ Beta-galactosidas  33.1      30 0.00076   14.0   2.8   16  374-389   306-321 (808)
202 PRK13410 molecular chaperone D  32.6      29 0.00074   14.1   1.9   36  367-402   428-463 (719)
203 pfam04952 AstE_AspA Succinylgl  32.2      31 0.00079   13.9   3.3   95  371-474     7-107 (289)
204 pfam06898 YqfD Putative stage   32.0      26 0.00066   14.5   1.5   30  440-469   324-354 (383)
205 cd07034 TPP_PYR_PFOR_IOR-alpha  32.0      31  0.0008   13.9   6.3   84  380-471    70-157 (160)
206 COG0652 PpiB Peptidyl-prolyl c  31.8      26 0.00066   14.5   1.5   15  805-819    33-47  (158)
207 TIGR01420 pilT_fam twitching m  31.0      18 0.00046   15.7   0.6   72  105-185    86-172 (350)
208 KOG0628 consensus               30.9      32 0.00083   13.8   3.6  116  372-496   265-425 (511)
209 PRK01433 hscA chaperone protei  30.8      26 0.00067   14.4   1.4   22  246-267   293-314 (595)
210 pfam04194 PDCD2_C Programmed c  30.7      24 0.00061   14.8   1.2   24  581-608   117-140 (169)
211 COG2374 Predicted extracellula  30.6      27 0.00068   14.4   1.4   15  384-398   275-289 (798)
212 smart00087 PTH Parathyroid hor  30.5      17 0.00044   15.8   0.4   19  183-201    16-34  (36)
213 TIGR01283 nifE nitrogenase MoF  30.5      33 0.00084   13.7   2.6   53  411-469    92-161 (470)
214 pfam12076 Wax2_C WAX2 C-termin  30.5      33 0.00084   13.7   2.8   37  751-790    16-52  (164)
215 pfam05320 Pox_RNA_Pol_19 Poxvi  30.4      12 0.00031   17.0  -0.3   17  105-121    80-96  (167)
216 COG5499 Predicted transcriptio  30.3      28  0.0007   14.3   1.4   70   96-173    36-111 (120)
217 pfam03652 UPF0081 Uncharacteri  30.2      33 0.00085   13.7   3.3   62  158-229    70-133 (134)
218 COG3608 Predicted deacylase [G  30.1      33 0.00085   13.7   4.6   94  369-477    51-148 (331)
219 PRK13246 dihydrobiliverdin:fer  30.0      33 0.00085   13.7   1.9   21  210-230   205-225 (236)
220 cd01815 BMSC_UbP_N BMSC_UbP (b  29.9      14 0.00035   16.5  -0.1   46  790-851     1-57  (75)
221 KOG1520 consensus               29.9      10 0.00026   17.6  -0.8  175  603-821   140-343 (376)
222 cd00671 ArgRS_core This is the  29.6      34 0.00087   13.6   2.4   20  103-122    28-47  (267)
223 pfam00425 Chorismate_bind chor  29.5      17 0.00044   15.9   0.3   40  140-179   163-207 (239)
224 PRK06923 isochorismate synthas  29.4      21 0.00053   15.2   0.7   17  373-389   350-368 (399)
225 cd02754 MopB_Nitrate-R-NapA-li  29.1      27  0.0007   14.3   1.3   61  509-581   225-285 (565)
226 KOG2560 consensus               29.1      25 0.00063   14.6   1.0   87  381-500   291-377 (529)
227 cd05816 CBM20_DPE2_repeat2 Dis  28.9      35 0.00089   13.5   2.2   67  616-697     9-76  (99)
228 cd02128 PA_TfR PA_TfR: Proteas  28.8      35 0.00089   13.5   2.8   36  286-327   146-182 (183)
229 PRK05183 hscA chaperone protei  28.7      35  0.0009   13.5   1.8   25  374-398   442-466 (621)
230 KOG1119 consensus               28.5      15 0.00039   16.2  -0.1   32  675-712   122-155 (199)
231 TIGR03142 cytochro_ccmI cytoch  28.4      36 0.00091   13.5   4.3   38  504-541    38-81  (117)
232 PRK13566 anthranilate synthase  28.3      18 0.00046   15.7   0.2   72  249-327   246-322 (724)
233 PRK01889 ribosome-associated G  28.3      24 0.00062   14.7   0.9   26  739-764   122-147 (353)
234 TIGR00612 ispG_gcpE 4-hydroxy-  28.3      36 0.00091   13.4   2.3  157  132-332   114-294 (633)
235 pfam01786 AOX Alternative oxid  28.1      36 0.00091   13.4   2.7   34  107-142   153-186 (214)
236 KOG4156 consensus               28.1      32 0.00082   13.8   1.5   58  782-850   892-951 (1329)
237 COG5097 MED6 RNA polymerase II  28.0      14 0.00036   16.5  -0.4   24  491-514    98-126 (210)
238 TIGR00576 dut dUTP diphosphata  28.0      22 0.00055   15.1   0.6   17  722-738    45-61  (151)
239 TIGR01161 purK phosphoribosyla  27.8      21 0.00055   15.1   0.5  121  103-251    13-136 (386)
240 COG1359 Uncharacterized conser  27.7      19 0.00048   15.5   0.2   30  668-697    28-57  (100)
241 KOG3171 consensus               27.5      10 0.00026   17.6  -1.2   91  239-331   170-265 (273)
242 cd04820 PA_M28_1_1 PA_M28_1_1:  27.2      29 0.00075   14.1   1.1   44  373-416    20-63  (137)
243 COG4098 comFA Superfamily II D  27.1      24 0.00061   14.7   0.7   15  681-695   397-411 (441)
244 PRK05647 purN phosphoribosylgl  27.1      37 0.00095   13.3   6.3  108  381-508     8-117 (200)
245 COG4223 Uncharacterized protei  27.1      25 0.00063   14.7   0.7   53  696-755   313-376 (422)
246 pfam12550 GCR1_C Transcription  26.8      24 0.00062   14.7   0.7   24   30-53      4-27  (81)
247 smart00833 CobW_C Cobalamin sy  26.8      38 0.00096   13.3   1.7   66  866-931     4-78  (92)
248 pfam10925 DUF2680 Protein of u  26.8      38 0.00096   13.3   5.0   43  493-538    12-54  (59)
249 COG0769 MurE UDP-N-acetylmuram  26.7      38 0.00097   13.2   2.4   40  418-457   396-436 (475)
250 pfam06785 UPF0242 Uncharacteri  26.6      18 0.00046   15.7  -0.0   75  558-644   123-197 (401)
251 COG2210 Peroxiredoxin family p  26.5      38 0.00097   13.2   2.3   41  107-147    68-113 (137)
252 PRK01286 deoxyguanosinetriphos  26.4      38 0.00098   13.2   2.6   16  106-122    40-55  (338)
253 PRK11869 2-oxoacid ferredoxin   26.2      39 0.00098   13.2   3.9  109  338-473    69-195 (284)
254 PTZ00075 S-adenosyl-L-homocyst  26.2      39 0.00098   13.2   3.5  209  393-636    40-270 (476)
255 PRK03906 mannonate dehydratase  26.2      27  0.0007   14.3   0.8   29  164-197    87-115 (389)
256 PRK01184 hypothetical protein;  26.2      13 0.00034   16.7  -0.8   54  413-470     4-68  (183)
257 pfam11339 DUF3141 Protein of u  26.1      11 0.00027   17.4  -1.3   42  447-504   426-467 (581)
258 KOG4269 consensus               25.7      25 0.00065   14.6   0.6   24  847-870   922-946 (1112)
259 KOG3350 consensus               25.6      39   0.001   13.1   2.6   74  805-889   130-209 (217)
260 PRK06389 argininosuccinate lya  25.5      40   0.001   13.1   3.9   31  367-400   183-213 (434)
261 COG1166 SpeA Arginine decarbox  25.5      40   0.001   13.1   3.0  300  158-537    62-426 (652)
262 TIGR00747 fabH 3-oxoacyl-(acyl  25.5      19 0.00047   15.6  -0.1   25  674-721   110-134 (329)
263 PRK00098 ribosome-associated G  25.4      33 0.00084   13.7   1.1  153  739-919    92-253 (298)
264 cd02753 MopB_Formate-Dh-H Form  25.3      40   0.001   13.1   3.8   58  510-579   223-280 (512)
265 KOG1845 consensus               25.3      40   0.001   13.1   1.5   39  838-876   661-702 (775)
266 TIGR02403 trehalose_treC alpha  25.3      40   0.001   13.1   1.7   35   92-126   169-203 (555)
267 pfam02633 Creatininase Creatin  25.2      40   0.001   13.1   5.3   52  230-284    71-122 (235)
268 pfam02836 Glyco_hydro_2_C Glyc  25.2      40   0.001   13.1   3.0   23  369-391    16-38  (297)
269 PRK08849 2-octaprenyl-3-methyl  25.2      35  0.0009   13.5   1.2   15  443-457     9-23  (384)
270 COG0128 AroA 5-enolpyruvylshik  25.0      37 0.00094   13.3   1.3   68  564-637   348-415 (428)
271 pfam12565 DUF3747 Protein of u  24.8      32 0.00082   13.8   1.0   14  619-632    96-109 (183)
272 TIGR02010 IscR iron-sulfur clu  24.8      41   0.001   13.0   1.5   17   17-33     36-52  (140)
273 TIGR03159 cas_Csc1 CRISPR-asso  24.8      41   0.001   13.0   1.6   29  604-636    25-53  (223)
274 PHA00098 hypothetical protein   24.7      32 0.00082   13.8   1.0   32  477-517    38-70  (112)
275 PRK11544 hycI hydrogenase 3 ma  24.7      41   0.001   13.0   3.5   40  733-777    13-53  (156)
276 pfam04007 DUF354 Protein of un  24.6     6.8 0.00017   18.9  -2.5   37  422-460    89-125 (335)
277 TIGR02169 SMC_prok_A chromosom  24.6      20 0.00051   15.3  -0.1   44  155-199   135-187 (1202)
278 TIGR00655 PurU formyltetrahydr  24.5      41  0.0011   13.0   2.0   70  160-231   101-172 (294)
279 COG1444 Predicted P-loop ATPas  24.4      28 0.00071   14.3   0.6   46  581-628   537-593 (758)
280 KOG2582 consensus               24.3      42  0.0011   12.9   1.7   78  383-485   332-409 (422)
281 PRK12713 flgJ peptidoglycan hy  24.3      31 0.00079   13.9   0.8   30    2-31     55-84  (339)
282 COG3769 Predicted hydrolase (H  24.2      42  0.0011   12.9   4.2   36  154-192    98-133 (274)
283 pfam02676 TYW3 Methyltransfera  24.2      42  0.0011   12.9   6.0   72  431-514    90-167 (191)
284 cd01020 TroA_b Metal binding p  23.7      43  0.0011   12.9  10.3  105  417-536    35-140 (264)
285 KOG0674 consensus               23.7      20  0.0005   15.4  -0.3   40  696-735    79-118 (406)
286 cd06422 NTP_transferase_like_1  23.6      43  0.0011   12.9   2.5   26  248-273    31-56  (221)
287 PRK12712 flgJ peptidoglycan hy  23.6      33 0.00084   13.7   0.8   32    1-32     54-85  (344)
288 cd01989 STK_N The N-terminal d  23.5      43  0.0011   12.8   6.4   50  222-275    68-117 (146)
289 TIGR00908 2A0305 ethanolamine   23.5      23 0.00059   14.9   0.0   26  770-795   381-408 (456)
290 cd06251 M14_ASTE_ASPA_like_1 A  23.4      43  0.0011   12.8   3.9   86  374-474    28-116 (287)
291 TIGR02382 wecD_rffC TDP-D-fuco  23.2      35  0.0009   13.5   0.9   37  629-665    99-136 (201)
292 pfam08754 consensus             23.2      44  0.0011   12.8   5.5   37  439-475     3-40  (113)
293 PRK10446 ribosomal protein S6   23.1      25 0.00065   14.6   0.2   49  100-150    14-63  (300)
294 PRK13463 phosphatase PhoE; Pro  23.1      44  0.0011   12.8   8.5   97  222-336   103-203 (203)
295 TIGR02744 TrbI_Ftype type-F co  23.1      44  0.0011   12.8   4.5   41  499-540    38-78  (112)
296 TIGR03234 OH-pyruv-isom hydrox  23.0      44  0.0011   12.8   3.9   54  214-267    82-142 (254)
297 pfam10544 T5orf172 T5orf172 do  23.0      27  0.0007   14.3   0.3   40  412-452     8-50  (79)
298 cd06425 M1P_guanylylT_B_like_N  22.9      43  0.0011   12.8   1.3   26  248-273    32-57  (233)
299 PRK09060 dihydroorotase; Valid  22.6      27  0.0007   14.3   0.3   39  746-793   345-384 (444)
300 PRK08948 consensus              22.5      38 0.00096   13.3   1.0   11  563-573   360-370 (392)
301 PRK12753 transketolase; Review  22.4      45  0.0011   12.7  24.0  184  663-876   401-590 (662)
302 PRK11069 recC exonuclease V su  22.4      41   0.001   13.0   1.1   12   20-31     66-77  (1122)
303 cd05817 CBM20_DSP Dual-specifi  22.3      45  0.0012   12.7   1.9   62  620-697    12-75  (100)
304 pfam09011 DUF1898 Domain of un  22.3      32 0.00082   13.8   0.6   22  737-758    81-102 (164)
305 TIGR01950 SoxR redox-sensitive  22.3      35 0.00089   13.5   0.7   28  861-888    45-72  (142)
306 KOG4166 consensus               22.3      45  0.0012   12.7   2.6   12  239-250    90-101 (675)
307 cd02742 GH20_hexosaminidase Be  22.2      45  0.0012   12.6   1.7   18  430-447   142-159 (303)
308 pfam09820 AAA-ATPase_like Pred  22.1      35  0.0009   13.5   0.7   11  233-243   188-198 (279)
309 PRK12700 flgH flagellar basal   22.0      41   0.001   13.0   1.1   19  851-869    64-82  (230)
310 PRK13738 conjugal transfer pil  22.0      46  0.0012   12.6   5.4   21  179-199   124-144 (210)
311 TIGR00821 EII-GUT PTS system,   22.0      27 0.00068   14.4   0.1   12  746-757    52-63  (181)
312 pfam11432 DUF3197 Protein of u  21.8      46  0.0012   12.6   1.8   51  236-294    52-102 (113)
313 TIGR01063 gyrA DNA gyrase, A s  21.7      46  0.0012   12.6   3.4  106   87-221   260-381 (864)
314 PRK13389 UTP--glucose-1-phosph  21.7      46  0.0012   12.6   2.4   25  248-272    40-64  (302)
315 pfam11810 DUF3332 Domain of un  21.6      41   0.001   13.0   1.0   31  397-427    53-85  (175)
316 cd06252 M14_ASTE_ASPA_like_2 A  21.6      47  0.0012   12.6   3.1   90  371-475    39-132 (316)
317 pfam03881 Fructosamin_kin Fruc  21.6      33 0.00084   13.7   0.5   15  468-484   208-222 (287)
318 PRK12451 arginyl-tRNA syntheta  21.4      47  0.0012   12.5   2.4   38  419-480   300-338 (562)
319 PRK12709 flgJ peptidoglycan hy  21.4      40   0.001   13.1   0.9   31    1-31     51-81  (318)
320 PRK12288 ribosome-associated G  21.4      45  0.0011   12.7   1.2   75  740-820   134-215 (344)
321 pfam04908 SH3BGR SH3-binding,   21.4      47  0.0012   12.5   4.2   63  164-229    22-90  (92)
322 TIGR01719 euk_UDPppase uridine  21.3      27 0.00068   14.4  -0.0   22  100-121   102-125 (301)
323 TIGR02735 purC_vibrio phosphor  21.1      29 0.00074   14.1   0.1   23   35-57     87-109 (365)
324 KOG1278 consensus               20.9      32 0.00083   13.8   0.4   10  748-757   541-550 (628)
325 PRK12308 bifunctional arginino  20.8      48  0.0012   12.5   5.4   45  366-426   188-232 (614)
326 PRK00192 mannosyl-3-phosphogly  20.8      48  0.0012   12.4   4.0   11  104-114    30-40  (275)
327 pfam03992 ABM Antibiotic biosy  20.3      34 0.00087   13.6   0.4   28  669-696    27-54  (77)
328 TIGR00520 asnASE_II L-asparagi  20.3      31 0.00079   13.9   0.1   15   94-108    49-63  (360)
329 pfam01521 Fe-S_biosyn Iron-sul  20.3      24  0.0006   14.8  -0.5   33  673-712    29-64  (91)
330 PRK12702 mannosyl-3-phosphogly  20.3      50  0.0013   12.4   3.4   23  154-176    95-117 (302)
331 PRK07333 2-octaprenyl-6-methox  20.2      45  0.0012   12.7   1.0   43  562-611   360-402 (403)
332 pfam06950 DUF1293 Protein of u  20.1      45  0.0012   12.7   1.0   23  486-517    51-73  (115)
333 PRK11181 23S rRNA (guanosine-2  20.1      50  0.0013   12.4   7.0   21  250-270   109-129 (244)
334 COG1208 GCD1 Nucleoside-diphos  20.1      50  0.0013   12.4   2.8   36  248-296    33-68  (358)
335 pfam04329 consensus             20.1      39   0.001   13.1   0.7   33  745-777    57-89  (135)

No 1  
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00  E-value=0  Score=3148.39  Aligned_cols=919  Identities=52%  Similarity=0.880  Sum_probs=872.7

Q ss_pred             CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62388999834763678968999999998738050798999998736764333333434443222222221112333445
Q gi|254781051|r    2 LQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKS   81 (957)
Q Consensus         2 ~~~~~~~f~~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (957)
                      |+++|+.|+++|||+|+|+.|||+||++|++||+|||++|+.||++++.+.........   +...           ...
T Consensus         1 ~~~~~~~~~~~SfL~G~Na~YIEeLYe~yl~DP~SVd~sWr~fF~~l~~~~~~~~~~~s---~~~~-----------~~~   66 (931)
T PRK09404          1 QQSMMKQFLESSFLFGANAGYIEELYERYLEDPDSVDEEWRAFFDGLPDGGSAPDVAHS---PVRE-----------SFR   66 (931)
T ss_pred             CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCC-----------CCC
T ss_conf             94489999854466788999999999998539765789999999727877765445776---3200-----------011


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCC-CCCCCC
Q ss_conf             5566655563367899999999999998817045401677777766787767876669997881715725665-787777
Q gi|254781051|r   82 AVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGV-LGLESA  160 (957)
Q Consensus        82 ~~~~~~~~~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~-~g~~~~  160 (957)
                      ...........+...++++|.+||+|||.|||+.|+||||++.. ++..|+|+|++|||+++|||++|+++++ +|.+.+
T Consensus        67 ~~~~~~~~~~~~~~~k~~rV~~LI~AYR~~GHl~A~LDPL~l~~-~~~~peL~~~~yGLte~DLd~~f~~~~~~~g~~~~  145 (931)
T PRK09404         67 RLAASASVSDPDGDAKQVKVLQLINAYRFRGHLAANLDPLGLWK-RPDVPELDPAFYGLTEADLDRTFNTGSLALGKETA  145 (931)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCC-CCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             12335666653667888999999999998472220479999999-99898769766698989938864368766788888


Q ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
Q ss_conf             89999999998406430277724899899999999841457788879889999999999999899999864033622225
Q gi|254781051|r  161 TIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA  240 (957)
Q Consensus       161 tL~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsL  240 (957)
                      ||+|||++|++||||+||+|||||.|++||+|||+|||+..+.+.|++++|++||++|++||+||+|||+||||+|||||
T Consensus       146 tLreIi~~Lk~tYCgsIG~EymHI~d~eer~Wl~~riE~~~~~~~~s~eeKk~IL~~L~~Ae~FE~FL~~Kf~g~KRFsl  225 (931)
T PRK09404        146 TLREIIEALKKTYCGSIGVEFMHISDPEERRWLQERIESPRGRPTFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSL  225 (931)
T ss_pred             CHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf             29999999999846758640007899899999999973847789989999999999999999999999887256336505


Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             64658999999999998737910799806765526899988537989999985588743223455510015026889835
Q gi|254781051|r  241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQIC  320 (957)
Q Consensus       241 EG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~  320 (957)
                      ||||||||+|++||+.|+++||++||||||||||||||+|||+||++.||+||+|+.+.+..++||||||||+|++++++
T Consensus       226 EG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL~nvl~kp~~~iF~EF~g~~~~~~~~sGDVKYHlG~s~~~~~~  305 (931)
T PRK09404        226 EGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHADEVLGSGDVKYHLGFSSDRETD  305 (931)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHCCCCCCCCCCCEEEEEEEEC
T ss_conf             67016999999999999876987689625654318999988568999999874589830103567715367056566508


Q ss_pred             CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             96189997178773100044553236777764166654455565445404788862575333467258876451067744
Q gi|254781051|r  321 GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYT  400 (957)
Q Consensus       321 g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~  400 (957)
                      |++|||+|+|||||||+|||||+|+||||||+++|.         ++++|||||||||||||||||||||||||+|+||+
T Consensus       306 g~~v~~sL~~NPSHLEaVnPVv~G~~RA~Qd~~~d~---------~~~kvlpiliHGDAAfaGQGvV~Etl~ls~l~gY~  376 (931)
T PRK09404        306 GGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDT---------DRSKVLPILIHGDAAFAGQGVVAETLNLSQLRGYR  376 (931)
T ss_pred             CCEEEEEECCCCCCEEEECCEECCCHHHHHHHHCCC---------CCCEEEEEEEECCHHHCCCCHHHHHHHHHCCCCCC
T ss_conf             965899834897642566661102013445651777---------65625788874444321465669876541388865


Q ss_pred             CCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             36579998416020124701024677840011220340587426788999999999999999738973998642112565
Q gi|254781051|r  401 VAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH  480 (957)
Q Consensus       401 tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GH  480 (957)
                      |||||||||||||||||+|+|+|||+||||||||++||||||||||||||++|++||++||++|+|||||||||||||||
T Consensus       377 tGGTIHiIvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~eyR~~F~kDVvIDlvcYRr~GH  456 (931)
T PRK09404        377 TGGTIHIVINNQIGFTTNPRDSRSTPYCTDVAKMIQAPIFHVNGDDPEAVVFATQLALEYRQKFKKDVVIDLVCYRRHGH  456 (931)
T ss_pred             CCCEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf             48648999616422214730213676631167874684688648987999999999999999858870797776520377


Q ss_pred             CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-----
Q ss_conf             643542235578888867189989999999864489898999999999999977566654125876566665686-----
Q gi|254781051|r  481 NEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGE-----  555 (957)
Q Consensus       481 NE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~-----  555 (957)
                      ||+|||+||||+||++|++||+++++|+++|+++|+||++++++++++|++.|+++++.++.+.|...+++...|     
T Consensus       457 NE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~L~~~g~it~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~  536 (931)
T PRK09404        457 NEGDEPSFTQPLMYKKIKKHPTTRKLYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEYKPNKADKLDGDWSPYLG  536 (931)
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCC
T ss_conf             76688666787888887649988999999987649989999999999999999999876401367776312365322057


Q ss_pred             ----CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             ----2666778999999998874368998620567788899899873343564211478988898863583157850100
Q gi|254781051|r  556 ----NERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDC  631 (957)
Q Consensus       556 ----~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~  631 (957)
                          ..++|||+++.|+.|+.+++++|++|++||+|+|++++|++|++++.+|||||||+|||||||.||++||||||||
T Consensus       537 ~~~~~~~~T~v~~~~L~~~~~~~~~~P~~f~~h~~v~k~~~~R~~~~~~~~~iDWa~AE~LAf~SLl~eG~~VRlsGQD~  616 (931)
T PRK09404        537 HEWDEAVDTGVPLERLKELAEKLTTIPEGFNVHPKVKKILEDRRKMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDS  616 (931)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             55567788877999999999997038876642689999999999998358875557889999999986696266446415


Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf             22333230279997788844556344278984599982431111013432022113865311100002442454102256
Q gi|254781051|r  632 ERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD  711 (957)
Q Consensus       632 ~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiD  711 (957)
                      +||||||||||||||+|+++|+||+||+++|++|+||||+||||||||||||||+++|++|||||||||||+||||||||
T Consensus       617 ~RGTFshRHavl~dq~t~~~y~pL~~~~~~q~~~~v~nS~LSE~avlgFEyGYs~~~p~~LviWEAQFGDF~NgAQiiiD  696 (931)
T PRK09404        617 GRGTFSHRHAVLHDQKTGETYIPLNHLSDGQASFEVIDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVID  696 (931)
T ss_pred             CCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCEEEEE
T ss_conf             66543453158886379958857655546686499993412577776545300025887505424331455467348975


Q ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf             55420257623336813543688888887656440578875214378269724889999999999743534886898566
Q gi|254781051|r  712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAP  791 (957)
Q Consensus       712 qfiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tP  791 (957)
                      |||||||+||+|+||||||||||||||||||||||||||||||||||||||||||||||||+|||||+|+||||||||||
T Consensus       697 qfi~s~e~KW~~~sglvllLPHGyeGqGPEHSSaR~ERfLQl~ae~N~~V~~~ttpA~~FH~LRrQ~~r~~rkPLiv~tp  776 (931)
T PRK09404        697 QFISSGEQKWGRLSGLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQVLRPFRKPLVVMTP  776 (931)
T ss_pred             EHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             00103677761016748987787678896444410789997530238189905987999999999850346787598473


Q ss_pred             CHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf             02210801268878937998603515776433444544457954576899868857899999999769986899984014
Q gi|254781051|r  792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQL  871 (957)
Q Consensus       792 KsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqL  871 (957)
                      |||||||.|+|+++||++|+ |++||+|+.         ..++++|+|||||||||||||+++|++++.+||||||||||
T Consensus       777 KsLLR~~~~~S~~~e~~~g~-F~~vi~d~~---------~~~~~~v~rvi~CsGKvyydL~~~r~~~~~~~vaivRiEqL  846 (931)
T PRK09404        777 KSLLRHKLAVSSLEELAEGS-FQPVIGDID---------ELDPKKVKRVVLCSGKVYYDLLEARRKRGIDDVAIVRIEQL  846 (931)
T ss_pred             HHHHCCCCCCCCHHHCCCCC-CEEECCCCC---------CCCHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEHHC
T ss_conf             67634854579989907994-516327987---------68840086899827689999999999769997799982112


Q ss_pred             CCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             868289999998537998-3998067853178457899769999875056776018975366467233867899999999
Q gi|254781051|r  872 YPFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS  950 (957)
Q Consensus       872 yPfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~  950 (957)
                      ||||+++|+++|++|||+ +||||||||+|||||+||+|||+.++.+   +..+++||||+++||||||+.++|++||++
T Consensus       847 ~PfP~~~l~~~l~~y~~~~~~vW~QEEp~N~GaW~~v~~rl~~~~~~---~~~~~~y~gR~~~aspA~G~~~~H~~e~~~  923 (931)
T PRK09404        847 YPFPHKELAAELAKYPNVKEVVWCQEEPKNQGAWYFIQHHLEEVLPE---GAQKLRYAGRPASASPAVGYMSLHKKQQEA  923 (931)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf             79978999999986899871799655756357888999999998622---387227956798888887887888999999


Q ss_pred             HHHHHHC
Q ss_conf             9998719
Q gi|254781051|r  951 FIEDALK  957 (957)
Q Consensus       951 li~~a~~  957 (957)
                      ||++||.
T Consensus       924 ii~~a~~  930 (931)
T PRK09404        924 LVEDALG  930 (931)
T ss_pred             HHHHHHC
T ss_conf             9999858


No 2  
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00  E-value=0  Score=3043.66  Aligned_cols=838  Identities=47%  Similarity=0.820  Sum_probs=806.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             67899999999999998817045401677777766787767876669997881715725665787777899999999984
Q gi|254781051|r   93 QSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHL  172 (957)
Q Consensus        93 ~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~g~~~~tL~eIi~~L~~t  172 (957)
                      ..+.|++||++||+|||.||||.|+||||+++.  +.+|+|+|++|||+++|||++|+++++.|.+.+||||||++||++
T Consensus       386 ~~~~k~~rV~~LI~AYR~rGHl~A~lDPL~~~~--~~~pdLd~~~~GLt~~DLdr~F~~g~~~G~~~~tLreIl~~Lr~t  463 (1234)
T PRK12270        386 DIVDKNARVMELIHAYRVRGHLMADTDPLEYDQ--RSHPDLDIETHGLTLWDLDREFPVGGFGGKETMKLRDVLGVLRDA  463 (1234)
T ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCC--CCCCCCCHHHCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             555689999999999997360432279888899--999987965559997992985625884786777799999999987


Q ss_pred             HCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHH
Q ss_conf             06430277724899899999999841457788879889999999999999899999864033622225646589999999
Q gi|254781051|r  173 YCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEE  252 (957)
Q Consensus       173 YCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG~EslIP~L~~  252 (957)
                      |||+||+|||||.|++||+|||+|||...  ..++.++|++||++|++||+||+|||+||+|+|||||||||||||+||+
T Consensus       464 YCg~IG~EymHI~d~eer~Wlq~riE~~~--~~~s~~~k~~iL~~L~~Ae~FE~FL~~Ky~GqKRFsLEG~EslIP~ld~  541 (1234)
T PRK12270        464 YCRKVGIEYMHIQDPEQRKWLQDRVERKH--EKPTRAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAESVIPLLDA  541 (1234)
T ss_pred             HCCCCEEEEECCCCHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
T ss_conf             43461356767798899999999975788--8999899999999999999999999864677534356772589999999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEEEEEE-CCCEEEEEECC
Q ss_conf             999987379107998067655268999885379899999855887-4322345551001502688983-59618999717
Q gi|254781051|r  253 IIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKG-PSEKEYSGDVKYHLGLCCNRQI-CGKDVKLLLQS  330 (957)
Q Consensus       253 ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~-~~~~~~sGDVKYHLG~s~~~~~-~g~~v~lsL~~  330 (957)
                      ||++|++.||++||||||||||||||+||||||+++||+||+|+. |....+|||||||||+|+++.+ +|++|||+|++
T Consensus       542 ~i~~aa~~Gv~evviGMaHRGRLNVL~Ni~gKp~~~iF~EFeg~~~p~~~~gsGDVKYHlG~s~~~~~~~G~~v~lsL~~  621 (1234)
T PRK12270        542 VIDQAAEHGLDEVVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRQAHGSGDVKYHLGAEGTYTQMFGNEIKVSLAA  621 (1234)
T ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECC
T ss_conf             99999876988799816874079999987089999999985799880212677872446765311333789778898448


Q ss_pred             CCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf             87731000445532367777641666544555654454047888625753334672588764510677443657999841
Q gi|254781051|r  331 NPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIIN  410 (957)
Q Consensus       331 NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvN  410 (957)
                      ||||||+|||||+|+||||||+++|..        ++.+||||||||||||+||||||||||||+|+||+||||||||||
T Consensus       622 NPSHLEaVnPVv~G~~RAkQd~~~~~~--------~~~~vlpiliHGDAAFaGQGVV~ETlnlS~L~gY~tGGTIHiVVN  693 (1234)
T PRK12270        622 NPSHLEAVDPVLEGIVRAKQDLLDKGE--------DGFTVLPLLLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVN  693 (1234)
T ss_pred             CCCCCEEECCEEEEEHHHHHHHHCCCC--------CCCEEEEEEEECHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf             986330116733100233356543577--------775146788743033225777898753115898766875899961


Q ss_pred             CCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             60201247010246778400112203405874267889999999999999997389739986421125656435422355
Q gi|254781051|r  411 NQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ  490 (957)
Q Consensus       411 NQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQ  490 (957)
                      |||||||+|.|+|||+||||||||++||||||||||||||++|++||++|||+|+|||||||||||||||||+|||+|||
T Consensus       694 NQIGFTT~P~daRSS~YcTDvAK~i~aPIfHVNgDDPEAVv~v~~LA~eyRq~F~kDVvIDLVcYRR~GHNE~DeP~fTQ  773 (1234)
T PRK12270        694 NQIGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFKKDVVIDLVCYRRRGHNEGDDPSMTQ  773 (1234)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf             76011378211456667215788757856885589879999999999999998688727866754203776667866688


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCCCCH
Q ss_conf             7888886718998999999986448989899999999999997756665412587656666568------6266677899
Q gi|254781051|r  491 PMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNG------ENERKNSVSK  564 (957)
Q Consensus       491 P~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~------~~~~~T~v~~  564 (957)
                      |+||++|++||+++++|+++|+++|+||++|++++.++|++.|+++|+.++.+.+....+....      ...++|+|+.
T Consensus       774 PlMY~~I~~hpsv~~lY~~~Li~eG~it~~e~~~~~~~~~~~Le~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~T~v~~  853 (1234)
T PRK12270        774 PLMYDLIDEKRSVRKLYTEALIGRGDISMEEAEQALRDYQGQLERVFNEVREAEKKPIEPSESVESDQMLPAGLATAVSK  853 (1234)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             88999987399889999999986799899999999999999999999986413777776433456633456777887699


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEE
Q ss_conf             99999988743689986205677888998998733435642114789888988635831578501002233323027999
Q gi|254781051|r  565 EILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILC  644 (957)
Q Consensus       565 ~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~  644 (957)
                      +.|++|+.+++++|++|++||||+|++++|++|++++ +|||||||+|||||||.||++||||||||+||||||||||||
T Consensus       854 e~L~~i~~~~~~~Pe~F~~Hpkv~kil~~R~~m~~~g-~iDWg~AE~LAfgSLL~eG~~VRLsGQD~~RGTFshRHavl~  932 (1234)
T PRK12270        854 EVLARIGDAFVNLPEGFTVHPRVKPVLEKRREMAYEG-KIDWAFGELLAFGSLLLEGKPVRLSGQDSRRGTFSQRHAVLI  932 (1234)
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEE
T ss_conf             9999999997039998852689999999999998548-977899999999999708970575254046543231213564


Q ss_pred             ECCCCCEEEEHHHCCCC-CCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             77888445563442789-84599982431111013432022113865311100002442454102256554202576233
Q gi|254781051|r  645 DQETGKRYFPLGNISKD-QGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLC  723 (957)
Q Consensus       645 dq~t~~~y~pL~~l~~~-q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~  723 (957)
                      ||+|+++|+||+||+++ |++|+||||+||||||||||||||+++|++|||||||||||+|||||||||||||||+||+|
T Consensus       933 Dq~t~~~y~PL~~l~~~~q~~f~v~nS~LSE~avLGFEYGYS~~~P~~LviWEAQFGDFaNGAQvIIDQFIsSgE~KW~~ 1012 (1234)
T PRK12270        933 DRETGEEFTPLQNLADDSQGKFLVYDSLLSEYAAMGFEYGYSVGNPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQ 1012 (1234)
T ss_pred             ECCCCCEEEEHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHH
T ss_conf             13678478577664836585189981521355555555244336897335406555344058648986578617776641


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCC
Q ss_conf             36813543688888887656440578875214378269724889999999999743534886898566022108012688
Q gi|254781051|r  724 TSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSS  803 (957)
Q Consensus       724 ~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~  803 (957)
                      +||||||||||||||||||||||||||||||||+|||||||||||||||+|||||+|+|||||||||||||||||.|+|+
T Consensus      1013 ~SgLVlLLPHGyEGQGPEHSSARiERfLQLcAe~NmqV~~pTTPAqyFHlLRRQ~~r~~RKPLIv~tPKSLLRh~~a~S~ 1092 (1234)
T PRK12270       1013 RSGVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGIRRPLVVFTPKSMLRNKAAVSD 1092 (1234)
T ss_pred             HCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCC
T ss_conf             35757886788888996521466899998610478599934983899999999874157888698584787458334799


Q ss_pred             HHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             78937998603515776433444544457954576899868857899999999769986899984014868289999998
Q gi|254781051|r  804 LSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVL  883 (957)
Q Consensus       804 l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqLyPfP~~~l~~~l  883 (957)
                      ++||++|+ ||+||+|+.         ..++++|||||||||||||||+++|++++.+||||||||||||||+++|+++|
T Consensus      1093 l~e~~~G~-F~~Vi~D~~---------~~~~~~VkRvilCSGKvYYDL~~~R~~~~~~dvAIvRiEQLyPfP~~~l~~~l 1162 (1234)
T PRK12270       1093 VEDFTEGK-FRSVIDDPT---------VGDPAKVKRVLLCSGKLYYDLAARREKDGRDDVAIVRVEQLYPLPERRLRETL 1162 (1234)
T ss_pred             HHHCCCCC-CEECCCCCC---------CCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf             78818995-446168987---------78841083899806721999999999769997699984002899889999999


Q ss_pred             HHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             537998-39980678531784578997699998750567760189753664672338678999999999998719
Q gi|254781051|r  884 SRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK  957 (957)
Q Consensus       884 ~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~li~~a~~  957 (957)
                      ++|||+ |+|||||||+|||||+|+++||..++.    +..+++|||||++||||||+.++|++||++||++||.
T Consensus      1163 ~~Ypna~e~vW~QEEP~N~GAW~fv~~rl~~~l~----~~~~l~yvgR~~sASpAtG~~~~H~~Eq~~li~~AF~ 1233 (1234)
T PRK12270       1163 ARYPNAEEVFWVQEEPANQGAWPFMGLNLPELLP----KLRGLRRVSRRASSSPATGSSKVHAVEQQELLDEAFA 1233 (1234)
T ss_pred             HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             7489988689953486635778889999999853----4885268577887888877878999999999999863


No 3  
>KOG0450 consensus
Probab=100.00  E-value=0  Score=2749.58  Aligned_cols=918  Identities=47%  Similarity=0.813  Sum_probs=854.8

Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             347636789689999999987380507989999987367643333334344432222222211123334455-5666555
Q gi|254781051|r   11 LSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSA-VESSCSL   89 (957)
Q Consensus        11 ~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   89 (957)
                      .++||+|+++.||||||+.|++||+||+.||.+||.++..+..........+....       .......++ .......
T Consensus        47 td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~-------~~~~~t~~~~~~~~~t~  119 (1017)
T KOG0450          47 TDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRS-------AAVAGTQSAVAARPNTG  119 (1017)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCC
T ss_conf             56444686137999999998719823555699998753367898544346887533-------11122212423466778


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC-------CCCCCCCCHHHCCCCHHHCCCEEEC--CCCCC--CC
Q ss_conf             6336789999999999999881704540167777776-------6787767876669997881715725--66578--77
Q gi|254781051|r   90 GETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSH-------QKDLSELSPAHYGFVKADYDRKICM--KGVLG--LE  158 (957)
Q Consensus        90 ~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~-------~~~~peL~~~~yGLse~DLd~~f~~--~~~~g--~~  158 (957)
                      .+.+.+.++++|+.|||||+.|||..|+|||||+...       ....++|.+++|||+|.|||++|..  .++++  ..
T Consensus       120 ~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~~t~Fi~~~~~  199 (1017)
T KOG0450         120 ISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGES  199 (1017)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCEECCCCCCCCCCCCC
T ss_conf             54344999999999999998546401047864566500123478889704436543875321364330477642368976


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             77899999999984064302777248998999999998414577888798899999999999998999998640336222
Q gi|254781051|r  159 SATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRF  238 (957)
Q Consensus       159 ~~tL~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRF  238 (957)
                      .+|||||+++|+++|||+||+|||||.|.++++||+++||... ..+|+.|+|+.||.||++|..||+||++||+..|||
T Consensus       200 ~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~-~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF  278 (1017)
T KOG0450         200 SLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF  278 (1017)
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             5529999999998763243057886085777279998636998-511577889999999887647999986508852013


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             25646589999999999987379107998067655268999885379899999855887432234555100150268898
Q gi|254781051|r  239 GADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQ  318 (957)
Q Consensus       239 sLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~  318 (957)
                      ||||||+|||+|++||+++++.||++||||||||||||||+||++||+++||+||.|..+.+ +||||||||||.+.+|.
T Consensus       279 GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~D-eGSGDVKYHLG~~~~R~  357 (1017)
T KOG0450         279 GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAAD-EGSGDVKYHLGMYYERP  357 (1017)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEEECCCCCCC
T ss_conf             65532545067898862354418021573377653268888887607999987516887776-78875346301330266


Q ss_pred             E--CCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf             3--59618999717877310004455323677776416665445556544540478886257533346725887645106
Q gi|254781051|r  319 I--CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGL  396 (957)
Q Consensus       319 ~--~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l  396 (957)
                      +  +||.|+|+|++||||||||+|||+||+||+|.+.+|.         +++|+|.|||||||||||||||||||+||.|
T Consensus       358 ~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~---------~~~k~m~ILiHGDaaFAgQGVVyET~hls~L  428 (1017)
T KOG0450         358 NRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE---------EGKKVMGILIHGDAAFAGQGVVYETFHLSDL  428 (1017)
T ss_pred             CCCCCCEEEEEEECCCHHHCCCCCEEECHHHHHHHHCCCC---------CCCEEEEEEEECCHHHCCCCEEEEEECCCCC
T ss_conf             6667853689995072220124862213388898860661---------3562578998545110367448886144457


Q ss_pred             CCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             77443657999841602012470102467784001122034058742678899999999999999973897399864211
Q gi|254781051|r  397 SGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYR  476 (957)
Q Consensus       397 ~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YR  476 (957)
                      |+|+|||||||||||||||||+|+.+|||+|||||||+++||||||||||||||++||++|+|||++|||||||||||||
T Consensus       429 P~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyR  508 (1017)
T KOG0450         429 PSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYR  508 (1017)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             77656974899972621210486422479873568987089757655887699999999999999871667079988874


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf             25656435422355788888671899899999998644898989999999999999775666541258765-66665686
Q gi|254781051|r  477 RFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEK-LGLLHNGE  555 (957)
Q Consensus       477 r~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~-~~~~~~~~  555 (957)
                      ||||||.|||+||||+|||+|++||++.++|++||+++|+++++|+++..++|.+.||.+|+.+|+|.+.. .+|+..+|
T Consensus       509 R~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW  588 (1017)
T KOG0450         509 RHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPW  588 (1017)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
T ss_conf             14877556754346379999870885899999998742851499999999999999999998644454023455540888


Q ss_pred             C-------------CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             2-------------666778999999998874368998620567788899899873343564211478988898863583
Q gi|254781051|r  556 N-------------ERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGY  622 (957)
Q Consensus       556 ~-------------~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~  622 (957)
                      .             -..|||+.+.|+.||++++++||+|++|+.++|+|+.|.+|+++ ++||||+||+|||||||.||+
T Consensus       589 ~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~EG~  667 (1017)
T KOG0450         589 PGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGI  667 (1017)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCC
T ss_conf             4435856787633479899997999998776236876662324199999988776651-366367888998888876072


Q ss_pred             EEEEECCCCCCCCCCCCEEEEEECCCC-CEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCC
Q ss_conf             157850100223332302799977888-4455634427898459998243111101343202211386531110000244
Q gi|254781051|r  623 KVRLSGQDCERGTFSHRHAILCDQETG-KRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGD  701 (957)
Q Consensus       623 ~VRlsGQD~~RGTFshRHavl~dq~t~-~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGD  701 (957)
                      +||||||||+||||||||+|||||+++ +.|+||+||.++|+.|+|+||+|||||||||||||||++||+||||||||||
T Consensus       668 hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWEAQFGD  747 (1017)
T KOG0450         668 HVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGD  747 (1017)
T ss_pred             EEEEECCCCCCCCCCCCHHHHCCCCCCCCEECCHHHCCCCCCCEEEECCCHHHHHEECCEECCCCCCCCCEEEEEHHHCC
T ss_conf             68740442255433420022042125752545165358777854564463345320000101112699716886133256


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCC------------------CEEEEE
Q ss_conf             24541022565542025762333681354368888888765644057887521437------------------826972
Q gi|254781051|r  702 FANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN------------------NMYVAN  763 (957)
Q Consensus       702 F~NgAQviiDqfiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~------------------N~~V~~  763 (957)
                      |+|+||+||||||||||+||.|+||||||||||||||||||||||+|||||||+||                  ||||+|
T Consensus       748 FaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcNw~vvn  827 (1017)
T KOG0450         748 FANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCNWQVVN  827 (1017)
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf             44630564876753423556652676997467767889654431489998741689743776057888777517759994


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEE
Q ss_conf             48899999999997435348868985660221080126887893799860351577643344454445795457689986
Q gi|254781051|r  764 CTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILC  843 (957)
Q Consensus       764 ~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~c  843 (957)
                      |||||||||+||||++|+||||||||+||||||||+|.|+++||.+|+.||.||+|..       ....+|++|||||||
T Consensus       828 ~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g-------~~~~~pe~vkrlv~c  900 (1017)
T KOG0450         828 CTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDG-------KAAQNPENVKRLVFC  900 (1017)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCHHHHCCCCCCCEECCCCC-------CCCCCHHHCEEEEEE
T ss_conf             2880799999999863112576588560776228100388777356778740241326-------555882235179996


Q ss_pred             CCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             8857899999999769-986899984014868289999998537998399806785317845789976999987505677
Q gi|254781051|r  844 TGKVYYDLLDNRDMRN-IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADY  922 (957)
Q Consensus       844 sGKvyydL~~~r~~~~-~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~  922 (957)
                      ||||||||.++|++.+ .++|||+|||||+|||++.+++.+.+|||+|++||||||+|||+|.||+|||.++|..++   
T Consensus       901 sGkVyydL~k~Rk~~~~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~Yv~PRl~T~l~~~~---  977 (1017)
T KOG0450         901 SGKVYYDLTKERKEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTALKRLA---  977 (1017)
T ss_pred             CCEEEHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHCCHHHHHHHHHHC---
T ss_conf             66675356688875275563358872011898579999999758982034201111036743220469999987607---


Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             60189753664672338678999999999998719
Q gi|254781051|r  923 SRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK  957 (957)
Q Consensus       923 ~~~~y~gR~~~aspA~G~~~~H~~e~~~li~~a~~  957 (957)
                      ++++|+||.++||||||+...|.+||+++++.||.
T Consensus       978 r~v~Y~GR~Psaa~AtGnk~~Hl~eq~~~l~~a~~ 1012 (1017)
T KOG0450         978 RPVKYAGRLPSAAPATGNKQTHLAEQKAFLNKAFQ 1012 (1017)
T ss_pred             CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             86345366886665656256778999999999756


No 4  
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00  E-value=0  Score=2707.99  Aligned_cols=897  Identities=52%  Similarity=0.885  Sum_probs=846.6

Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89998347636789689999999987380507989999987367643333334344432222222211123334455566
Q gi|254781051|r    6 NKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVES   85 (957)
Q Consensus         6 ~~~f~~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (957)
                      |+.|.++|||+|+|++|||+||++|++||+|||++|+.||+++..+.....                   ..   .    
T Consensus         1 ~~~~~~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~~~~~~-------------------~~---~----   54 (906)
T COG0567           1 MKQFLNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRESF-------------------RR---L----   54 (906)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHH-------------------HH---H----
T ss_conf             964123555577643789999999850976568899999986276433444-------------------55---3----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEE-CCCCCCCCCCCHHH
Q ss_conf             65556336789999999999999881704540167777776678776787666999788171572-56657877778999
Q gi|254781051|r   86 SCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKIC-MKGVLGLESATIPE  164 (957)
Q Consensus        86 ~~~~~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~-~~~~~g~~~~tL~e  164 (957)
                      .....+.....++++|.+||+|||.|||+.|+||||++  +++.+|+|+|++|||+++||++.|+ .++++|...++|+|
T Consensus        55 ~~~~~~~~~~~~~~~~~~li~ayR~~Ghl~a~ldPL~~--~~~~~~~l~~~~~glt~~d~~~~~~~~~~~~~~~~~~l~e  132 (906)
T COG0567          55 AKKGNDPDATLKSVKVLRLINAYRSRGHLHANLDPLGL--KRPDVPELDPEFHGLTEADLDETFNIGDGFLGKETMTLRE  132 (906)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCC--CCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf             01356404667778999999999973315423784358--9998332787335999789605456555656534231999


Q ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHH
Q ss_conf             99999984064302777248998999999998414577888798899999999999998999998640336222256465
Q gi|254781051|r  165 IVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSE  244 (957)
Q Consensus       165 Ii~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG~E  244 (957)
                      +++.|+++|||+||+|||||.|++||+||++|||+  ..+.|+.|+|++||++|++||+||+|||+||||+|||||||||
T Consensus       133 ~~~~l~~~Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~e  210 (906)
T COG0567         133 LIEILKKTYCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGE  210 (906)
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf             99999987246503566335998999999999715--7888788999999999999999999862428897101535456


Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEE
Q ss_conf             89999999999987379107998067655268999885379899999855887432234555100150268898359618
Q gi|254781051|r  245 VIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDV  324 (957)
Q Consensus       245 slIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v  324 (957)
                      ||||||+++|++|+++||++||||||||||||||+|||||||+.||+||+|+...... +||||||||+|+++.+++++|
T Consensus       211 slip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~-sGDVKYH~G~~~~~~~~~~~v  289 (906)
T COG0567         211 SLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDL-SGDVKYHLGFSSDRQTDGGKV  289 (906)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEE
T ss_conf             7889999999998866823078436554237889988379989999984799877766-666420356533334689806


Q ss_pred             EEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf             99971787731000445532367777641666544555654454047888625753334672588764510677443657
Q gi|254781051|r  325 KLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGN  404 (957)
Q Consensus       325 ~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGT  404 (957)
                      ||+|++||||||+|||||+|+|||+||++.|.         ++.|||||+|||||||+|||||+||||||+++||+||||
T Consensus       290 ~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~---------~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGt  360 (906)
T COG0567         290 HLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDT---------ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGT  360 (906)
T ss_pred             EEEECCCCCHHHHHCHHHHCCHHHHHHHHCCC---------CCCEEEEEEEECCHHCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf             89834895254332446534067666541377---------645267888743720178528999987417997666975


Q ss_pred             EEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf             99984160201247010246778400112203405874267889999999999999997389739986421125656435
Q gi|254781051|r  405 IHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGD  484 (957)
Q Consensus       405 iHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~D  484 (957)
                      |||||||||||||+|+|+|||+||||+|||++||||||||||||||++|+++|++||++|+|||||||+||||+||||+|
T Consensus       361 iHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~D  440 (906)
T COG0567         361 WHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGD  440 (906)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf             89997457799899652347888887444367854303568833302667778999863378722322557888987554


Q ss_pred             CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCCCCCC
Q ss_conf             42235578888867189989999999864489898999999999999977566654125876------566665686266
Q gi|254781051|r  485 EPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPE------KLGLLHNGENER  558 (957)
Q Consensus       485 eP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~------~~~~~~~~~~~~  558 (957)
                      ||++|||.||+.|++|||++++|+++|+++|++++++++.+.++|++.|+.++...+.+.+.      |.+.........
T Consensus       441 ePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (906)
T COG0567         441 EPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHV  520 (906)
T ss_pred             CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             30012789999876499714447999976223259999999999999863054667666664304445654567774445


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
Q ss_conf             67789999999988743689986205677888998998733435642114789888988635831578501002233323
Q gi|254781051|r  559 KNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSH  638 (957)
Q Consensus       559 ~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFsh  638 (957)
                      +|+++++.|+.|+.+++++|++|++||+|+|++++|.+|.+++.++||||||.|||||||.+|++||||||||+||||||
T Consensus       521 ~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~h  600 (906)
T COG0567         521 DTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSH  600 (906)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66548899999878863077630124889999999998741455331667888615500036887442003179867534


Q ss_pred             CEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             02799977888445563442789845999824311110134320221138653111000024424541022565542025
Q gi|254781051|r  639 RHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGE  718 (957)
Q Consensus       639 RHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e  718 (957)
                      ||+|+|||.+++.|+||+|++.+|++|+|+||+|||+||||||||||+.+|++|||||||||||+|||||||||||||||
T Consensus       601 RHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge  680 (906)
T COG0567         601 RHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGE  680 (906)
T ss_pred             CCEEEECCCCCCCCCCHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
T ss_conf             42454235674221702331356644999814556888875653143238732210013205613687612136566598


Q ss_pred             HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCC
Q ss_conf             76233368135436888888876564405788752143782697248899999999997435348868985660221080
Q gi|254781051|r  719 QKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHK  798 (957)
Q Consensus       719 ~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~  798 (957)
                      +||+|+||||||||||||||||||||||||||||||||+|||||+|||||||||+||||++|.+||||||||||||||||
T Consensus       681 ~KW~r~sgLv~lLPHgyEGQGPEHSSaRlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~  760 (906)
T COG0567         681 QKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHK  760 (906)
T ss_pred             HHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCC
T ss_conf             99988657227722767899976764346889986187588788338289999999998764156751855765565462


Q ss_pred             CCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
Q ss_conf             12688789379986035157764334445444579545768998688578999999997699868999840148682899
Q gi|254781051|r  799 RVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDY  878 (957)
Q Consensus       799 ~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqLyPfP~~~  878 (957)
                      .|+|+++||++| .|++||.|.+.         .++ +|+|||+|||||||||.+.|++.+.+||||+|||||||||.++
T Consensus       761 ~a~S~~~el~~~-~F~~vl~d~~~---------~~~-~v~rvvlcSGKvyydl~~~r~~~g~~dvaiiRiEqLyPfP~~~  829 (906)
T COG0567         761 LAVSSLEELTEG-TFQPVLEDIDE---------LDP-KVKRVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPAKA  829 (906)
T ss_pred             CCCCCHHHHCCC-HHHCCHHCCCC---------CCC-CEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
T ss_conf             668845552301-22100201111---------454-4135763044067999977864687652687520116766899


Q ss_pred             HHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             99998537998-39980678531784578997699998750567760189753664672338678999999999998719
Q gi|254781051|r  879 LIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK  957 (957)
Q Consensus       879 l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~li~~a~~  957 (957)
                      +.++|++|+|. |+|||||||+|||||.|++++|+.+++.    ..+++|+|||++||||+|+.++|++||+.++++||.
T Consensus       830 l~~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~l~~----~~~l~yagRp~saSpA~G~~~~h~~eq~~l~~dal~  905 (906)
T COG0567         830 LAALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEVLPE----GDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDALG  905 (906)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC----CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9999974343023556665777665277788899986212----320001478766676514199999999877675403


No 5  
>KOG0451 consensus
Probab=100.00  E-value=0  Score=2190.39  Aligned_cols=835  Identities=42%  Similarity=0.750  Sum_probs=801.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCC--CCCCCCHHHHHHHHHHHHCC
Q ss_conf             9999999999988170454016777777667877678766699978817157256657--87777899999999984064
Q gi|254781051|r   98 FFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL--GLESATIPEIVDVLSHLYCS  175 (957)
Q Consensus        98 q~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~--g~~~~tL~eIi~~L~~tYCg  175 (957)
                      +..+.+||+|||.+||+.|++|||++....+...+|+|.+||+-        .+.+++  ++...+|.++.+.|+.+|||
T Consensus        53 ~a~~~rlv~afr~hGhk~A~vnPl~~l~~v~e~qeL~pa~yG~~--------~t~gLl~~~k~~~sl~~l~~~L~~IYCG  124 (913)
T KOG0451          53 QANVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQ--------RTDGLLSGPKVAHSLAQLEQLLKDIYCG  124 (913)
T ss_pred             CCCHHHHHHHHHHHCCHHHCCCCHHHHHCCHHHHHHCHHHHCCH--------HHHHHHCCCCCCCCHHHHHHHHHHHEEC
T ss_conf             33278999999971613333680676534198987577750641--------1013440761012699999998763117


Q ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHH
Q ss_conf             30277724899899999999841457788879889999999999999899999864033622225646589999999999
Q gi|254781051|r  176 NIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIR  255 (957)
Q Consensus       176 sIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG~EslIP~L~~ii~  255 (957)
                      ++.+|||||+|.|||.||.+++|... ..+|.++|+++|-+.|++++.|++||++|||+.||||.||+|||+....++++
T Consensus       125 ~tsiEfs~v~~~eEr~W~a~nFE~l~-~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYGgEGAESM~aFF~eLl~  203 (913)
T KOG0451         125 STSIEFSYVEDIEEREWLARNFETLD-QEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYGGEGAESMLAFFWELLR  203 (913)
T ss_pred             CCHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             20433556333778899998899888-98853798888999998666677787741635454055448889999999998


Q ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCC--CCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCC
Q ss_conf             98737910799806765526899988537989999985588--7432234555100150268898359618999717877
Q gi|254781051|r  256 QGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGK--GPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPS  333 (957)
Q Consensus       256 ~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~--~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPS  333 (957)
                      .++..+|++||||||||||||+|+.+|+.||..||++..|.  +|++....|||..||-.|-|.+..++++|++|+||||
T Consensus       204 ~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPS  283 (913)
T KOG0451         204 DSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPS  283 (913)
T ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH
T ss_conf             78862850588705666740588888439989999873073227503567777888732355440468844799558816


Q ss_pred             CCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE
Q ss_conf             31000445532367777641666544555654454047888625753334672588764510677443657999841602
Q gi|254781051|r  334 HLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI  413 (957)
Q Consensus       334 HLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI  413 (957)
                      ||||||||+|||+|+||..+++.+..++.+..-++.|+++++||||||+|||||.||++||++|+|++|||+|+||||||
T Consensus       284 HLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQv  363 (913)
T KOG0451         284 HLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQV  363 (913)
T ss_pred             HHHCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHHHHCCCCCEEECCEEEEEECCCC
T ss_conf             64015725322036777751378989877688877268999854511115863687774314873355655899962620


Q ss_pred             ECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             01247010246778400112203405874267889999999999999997389739986421125656435422355788
Q gi|254781051|r  414 GFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMM  493 (957)
Q Consensus       414 GFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~m  493 (957)
                      ||||....+|||.|||||||.|+||||||||||||+|++|++||++||.+|+|||||||+|||||||||+|||.||.|+|
T Consensus       364 gfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvm  443 (913)
T KOG0451         364 GFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVM  443 (913)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCCHHH
T ss_conf             02376446653024567898737877984799989999999999999998642225306777775234446744467047


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---------CCCCCCCCCH
Q ss_conf             8886718998999999986448989899999999999997756665412587656666568---------6266677899
Q gi|254781051|r  494 YKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNG---------ENERKNSVSK  564 (957)
Q Consensus       494 Y~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~---------~~~~~T~v~~  564 (957)
                      ||.|+.+.+|+++|+++|+++|++|+++++++.++|.++|++++..+..|.|-...+...|         ...|+|||+.
T Consensus       444 yk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdTGv~~  523 (913)
T KOG0451         444 YKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDY  523 (913)
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCH
T ss_conf             77777641340899999986155539999999999999998998407766899634677522121580553111347646


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             9999998874368998620567788-899899873343564211478988898863583157850100223332302799
Q gi|254781051|r  565 EILKKIGSSIIRLPKSFNTHKIVER-LMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAIL  643 (957)
Q Consensus       565 ~~L~~i~~~l~~~Pe~f~~h~~v~k-~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl  643 (957)
                      +.|+.||.+.+++|++|++||.+.| .++.|++.++.|.+|||+|||+||+||||.+|++||||||||+|||||||||++
T Consensus       524 dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~  603 (913)
T KOG0451         524 DLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAML  603 (913)
T ss_pred             HHHHHHCCCCEECCHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf             89998366764063211414799998899999987537764547788898888885367336603404764112121124


Q ss_pred             EECCCCCEEEEHHHCCCCC-CEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9778884455634427898-459998243111101343202211386531110000244245410225655420257623
Q gi|254781051|r  644 CDQETGKRYFPLGNISKDQ-GHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWL  722 (957)
Q Consensus       644 ~dq~t~~~y~pL~~l~~~q-~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~  722 (957)
                      .||.|++.|+|||++.++| +.++|.||+|||+||||||||+|++||+.|.|||||||||+||||||||+||+|||+||+
T Consensus       604 VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi~sgE~KWl  683 (913)
T KOG0451         604 VDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWL  683 (913)
T ss_pred             EECCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCCEEEEEEEECCCCHHHH
T ss_conf             31256613536210377768716742662217666301103235786532453233303136754787640105512445


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCC---------CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCH
Q ss_conf             33681354368888888765644057887521437---------826972488999999999974353488689856602
Q gi|254781051|r  723 CTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN---------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKS  793 (957)
Q Consensus       723 ~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~---------N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKs  793 (957)
                      .+|||||||||||||+||||||||||||||||+..         ||.|+||||||||||+||||+.|+|||||||.+||.
T Consensus       684 ~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~  763 (913)
T KOG0451         684 ESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKT  763 (913)
T ss_pred             HHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECHHH
T ss_conf             41874898257768889764315699999873233336777604579707997899999999998774258648855088


Q ss_pred             HHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCC-EEEEEEECCC
Q ss_conf             210801268878937998603515776433444544457954576899868857899999999769986-8999840148
Q gi|254781051|r  794 LLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIAD-IYLLRIEQLY  872 (957)
Q Consensus       794 LLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~-vaivRiEqLy  872 (957)
                      |||||.|+|+++||.+||.|++||.|.          .++|+|||+|||||||.||.|.++|++++.+| +||+|+|.||
T Consensus       764 LLRlPaA~ST~~ef~PGTtf~nVigd~----------~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd~~AI~RvE~LC  833 (913)
T KOG0451         764 LLRLPAATSTHEEFQPGTTFHNVIGDT----------IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKDTVAILRVESLC  833 (913)
T ss_pred             HHHCCCHHHHHHHCCCCCCCCCCCCCC----------CCCHHHHEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEHHHCC
T ss_conf             761700120476428985115433443----------3694670179996583143488878760555521467525408


Q ss_pred             CCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             68289999998537998-39980678531784578997699998750567760189753664672338678999999999
Q gi|254781051|r  873 PFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSF  951 (957)
Q Consensus       873 PfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~l  951 (957)
                      |||.++|+++|++|+|+ ++||.||||+|||||+||+||+++.|      .++|+|+|||+.+.||||.+++|++|.++|
T Consensus       834 PFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFVrPRFEn~l------g~~L~~~GRpelp~pAtgIG~vH~~e~eei  907 (913)
T KOG0451         834 PFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFENLL------GQQLHYCGRPELPTPATGIGKVHKREVEEI  907 (913)
T ss_pred             CCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECHHHHHHH------HHHHEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             97469999999866871321103435666786111166778776------445100578999976422103546669998


Q ss_pred             HHHHHC
Q ss_conf             998719
Q gi|254781051|r  952 IEDALK  957 (957)
Q Consensus       952 i~~a~~  957 (957)
                      |++.|.
T Consensus       908 va~tFa  913 (913)
T KOG0451         908 VAATFA  913 (913)
T ss_pred             HHHCCC
T ss_conf             742259


No 6  
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603   2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide . This activity of this enzyme is tightly regulated and it is a major determinant of the metabolic flux through the TCA cycle. This enzyme is composed of multiple copies of three different subunits: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) which is often shared with similar enzymes such as pyruvate dehydrogenase . The E2 component forms a large multimeric core which binds the peripheral E1 and E3 subunits. The substrate is transferred between the active sites of the different subunits by a lipoyl moiety, bound to a lysine residue from the E2 polypeptide.   This entry represents the E1 subunit of 2-oxoglutarate dehydrogenase. It catalyses the decarboxylation of this compound in a thiamine pyrophosphate-dependent manner, transferring the resultant succinyl group onto the liposyl moiety bound to the E2 subunit. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the E2 component of 2-oxoglutarate dehydrogenase enzyme. ; GO: 0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity, 0030976 thiamin pyrophosphate binding, 0006096 glycolysis.
Probab=100.00  E-value=0  Score=1717.45  Aligned_cols=924  Identities=45%  Similarity=0.762  Sum_probs=836.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             636789689999999987380507989999987367643-3333343444322222222111233344555666555633
Q gi|254781051|r   14 FLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENS-EEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLGET   92 (957)
Q Consensus        14 FL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (957)
                      |+.+.|..|+++||+.|+.||.||+++|+.+|+.++... ..........         .....................
T Consensus         1 ~~~~~~~~~~~~~~~~~~~dp~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~   71 (990)
T TIGR00239         1 FLGGANLGYIEELYEAYLKDPSSVDPSWRETFDELPGPGIPAPEQFHAPS---------PSYFRRLAGAAPKGTVTAGDP   71 (990)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC---------HHHHHHHHCCCCCCHHHHHHH
T ss_conf             97775226789999975057310232379898642777663543323454---------355655311110000001004


Q ss_pred             HHHHHHHHHHHHH-HHHHHCCCHHHCCCCCCC----CCCCCCCCCCCHHHCCCCHHHCCCEEECCCC-CCCC----CCC-
Q ss_conf             6789999999999-999881704540167777----7766787767876669997881715725665-7877----778-
Q gi|254781051|r   93 QSVKDFFQVMKMI-DAYRSYGHFKANIDPLGY----NSHQKDLSELSPAHYGFVKADYDRKICMKGV-LGLE----SAT-  161 (957)
Q Consensus        93 ~~~~kq~rV~~LI-~AYR~~GHl~A~lDPLgl----~~~~~~~peL~~~~yGLse~DLd~~f~~~~~-~g~~----~~t-  161 (957)
                      ....+.+++.++| ++||.+||+.|++|||++    ....+..++|++.+|||++.|+++.|+++.. ++..    +.. 
T Consensus        72 ~~~~~~~~~~~~~c~~~~~~g~~~~~~~pl~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~  151 (990)
T TIGR00239        72 DENASLVKLLQLLCRAYRFRGHLKANLDPLGYSFGSNWDEPKPPELDLSYYGLTEEDLDETFNLGPGVLPKDARDGPKKL  151 (990)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             55578899999988776530210013440000002223555553356320355345432321256300111000002233


Q ss_pred             --HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             --9999999998406430277724899899999999841457788879889999-9999999998999998640336222
Q gi|254781051|r  162 --IPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRD-ILDKLVRAEGFEKFIDIKYKGAKRF  238 (957)
Q Consensus       162 --L~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~-iL~~L~~Ae~FE~FL~~Kf~g~KRF  238 (957)
                        +.++++.|+++||+++|+||+||.+.+++.|+++++|.......++.++|+. +|++|+.+++||+||++||||.|||
T Consensus       152 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~~~l~~~~~g~~~~  231 (990)
T TIGR00239       152 GNGLELLEYLKKTYCGSIGLEFDHVPDFEEKDWLQEKIESGLEPFQFNSEEKLSAFLDRLTAAEGFERFLGAKFPGAKRF  231 (990)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             23789999998751221241120134246788998876410002331146788999987665434577652016662100


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCC----------CCCCCCCC
Q ss_conf             25646589999999999987379107998067655268999885379899999855887432----------23455510
Q gi|254781051|r  239 GADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE----------KEYSGDVK  308 (957)
Q Consensus       239 sLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~----------~~~sGDVK  308 (957)
                      ++||.|++||+++.+++.+...|++++++||+||||||+|+||++||++.+|.||.|.....          ..++||||
T Consensus       232 ~~~g~~~~~p~~~~~~~~~~~~g~~~~~~g~~~~g~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~g~g~~~  311 (990)
T TIGR00239       232 SLEGLDALVPGLKELIRHSVKSGTEDVVLGMAHRGRLNVLVNVLGKPPESLFDEFAGKPASDLPSEDPLESATDGTGDVK  311 (990)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             22320245556899987554204112222000123045677653263135677641653101344342100125554112


Q ss_pred             CCCC-EEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHH
Q ss_conf             0150-268898359618999717877310004455323677776416665445556544540478886257533346725
Q gi|254781051|r  309 YHLG-LCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIV  387 (957)
Q Consensus       309 YHLG-~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV  387 (957)
                      ||+| .+++..++++.+++.|++||||||.++|||.|.+||+++...+.    +.+..+..++++|++||||||+|||||
T Consensus       312 ~~~g~~~~~~~~~~~~~~l~l~~~p~~l~~~~p~~~g~~~~~~~~~~~~----g~p~~~~~~~l~~~~~gd~~~~g~g~~  387 (990)
T TIGR00239       312 YHLGRFGSDFTTDGKLVHLPLAFNPSHLEIVSPVVLGSTRARLERLNDL----GYPVPEETKVLAILLHGDAAFAGQGVV  387 (990)
T ss_pred             HHHHCCCCCCCCCCCCCEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHC----CCCCCCCCCEEEEEEECCCCCCCCCHH
T ss_conf             3330012221125662012210364200010301210246666554313----786542332035665054223454235


Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCEECCC-CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             887645106774436579998416020124-7010246778400112203405874267889999999999999997389
Q gi|254781051|r  388 SETFGLSGLSGYTVAGNIHLIINNQIGFTT-NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHK  466 (957)
Q Consensus       388 ~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT-~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~k  466 (957)
                      +||++|+.++||.+|||||||+|||||||| +|.++||+.||+|++|++++||||||+||||+|.++.++|++||.+|++
T Consensus       388 ~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~  467 (990)
T TIGR00239       388 QETLNLSSLRGYSVGGTIHIVINNQIGFTTSNPADARSTPYCSDLAKGIEAPIFHVNADDPEAVAFAFRLAVEYRNTFKR  467 (990)
T ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             55430100454223642688750521222366210014432234554320333662476446788999888887653121


Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHHHHHHHHHC
Q ss_conf             7399864211256564354223557888886718998999999986448989899999----999999997756665412
Q gi|254781051|r  467 SVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQS----LANNWHKYLEAEYKESES  542 (957)
Q Consensus       467 DVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~----~~~~~~~~l~~~~~~~k~  542 (957)
                      |++||++|||||||||.|+|.+|||+||+.|++||++..+|.++|+.+|+++.+++++    +...+.+.++.+......
T Consensus       468 d~~~d~~~~~~~g~~~~d~p~~~~p~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  547 (990)
T TIGR00239       468 DVLIDLVGYRRHGHNEADEPSATQPLLYDKIKKHPTPRKVYADKLVSEGVVTEEDVTEHKKWVWNLYRDALEKGDDVVPS  547 (990)
T ss_pred             CCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             00010011101467644564210036788775045302455656653011114566556778888777776544431121


Q ss_pred             CCC----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCCHHHHH
Q ss_conf             587----------6566665686266677899999999887436899862056778889989-98733435642114789
Q gi|254781051|r  543 YCP----------EKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANR-QKMIETGKGIDWSMAES  611 (957)
Q Consensus       543 ~~~----------~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R-~~~~~~~~~iDW~~AE~  611 (957)
                      +.+          .+......|.....+.++...+..+++.+.++|+++.+|+.+.|++.+| ..+..++..+||+++|.
T Consensus       548 ~~~~~~~~~~~~~~p~~l~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~  627 (990)
T TIGR00239       548 WREWLTAAWEWLKSPPELPEEWLPGYPDKVPESRLKELGKLLGEWPEGLEFHPRLAKIYGDRGKALFDGEKLLDWGLAES  627 (990)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHH
T ss_conf             11234455541146421244445545641037889999886531000134566788875200001221442000010124


Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCC
Q ss_conf             88898863583157850100223332302799977888445563442789845999824311110134320221138653
Q gi|254781051|r  612 LAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNA  691 (957)
Q Consensus       612 LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~  691 (957)
                      |||++|+.+|.+||++|+|++||||+|||+|+||++++..|+||.|+...++.|.|+||+|||++||||||||++..|+.
T Consensus       628 ~~~~~~~~~g~~~~~~g~d~~~g~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~p~~  707 (990)
T TIGR00239       628 LAFATLLDDGTPVRLSGEDSGRGTFFHRHAVLHDQESGAGYTPLSHLHNGKGDFAVWNSPLSEGGVLGFEYGYALTSPET  707 (990)
T ss_pred             HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHEECCCCCCEECCCHHCCCCCCCEEEECCCCCCCCHHHEECCCCCCCCCE
T ss_conf             44444431574303215533222012211110035566301010000245432121012012000000001332358742


Q ss_pred             CEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCC--------------
Q ss_conf             111000024424541022565542025762333681354368888888765644057887521437--------------
Q gi|254781051|r  692 LTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN--------------  757 (957)
Q Consensus       692 L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~--------------  757 (957)
                      |++||||||||+|+||++|||||++|+.||++.+||||+||||||||||||||+|+|||||||+++              
T Consensus       708 l~~w~~~~gd~~~~~~~~~d~~~~~g~~~w~~~~gl~~~lp~g~~g~gp~~~~~~~~~~l~l~~~~p~~~p~~~~~~~~~  787 (990)
T TIGR00239       708 LVLWEAQFGDFANGAQVVIDQFISGGEQKWGRKCGLVLLLPHGYEGQGPEHSSGRLERFLQLAAEDPRYFPSEEKLQRQH  787 (990)
T ss_pred             EEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             56630000332232132234445201343332226135515676777764204688999987513654476456776432


Q ss_pred             ---CEEEEECCCHHHHHHHHHHHH---CCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             ---826972488999999999974---35348868985660221080126887893799860351577643344454445
Q gi|254781051|r  758 ---NMYVANCTSPANYFHILRRQI---YDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKL  831 (957)
Q Consensus       758 ---N~~V~~~ttpAq~FH~LRRQ~---~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~  831 (957)
                         ||+||+||||||+||+||||.   +|.+|+||++|+||+|||||.++|+++++.+|+ |++++.|-...     ...
T Consensus       788 ~dc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~pl~~~~~~~ll~~p~~~~~~~~~~~g~-~~~~~~~~~~~-----~~~  861 (990)
T TIGR00239       788 QDCNWQVCVPTTPAQLFHILRRQAKLLLREFRRPLVLLSPKSLLRHPLAVSSLEELSEGG-FQPVIGEIEEG-----GLS  861 (990)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHCCHHHHHHHHHHCCC-CHHHHHHHHCC-----CCC
T ss_conf             035306751342478999988888888876414200012166651410245577652353-10223212202-----222


Q ss_pred             CCHHHCCEEEEECCHHHHHH--HHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHH
Q ss_conf             79545768998688578999--99999769986899984014868289999998537998-3998067853178457899
Q gi|254781051|r  832 KEDSHIRRVILCTGKVYYDL--LDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIE  908 (957)
Q Consensus       832 ~~~~~v~rvi~csGKvyydL--~~~r~~~~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~  908 (957)
                      .++++++|+++|+||+||||  ...|.+.+..+++++|+|||||||...+++.+.+||+. +++||||||.|||+|.|..
T Consensus       862 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~p~~~~~~~~~~~~~~~~~~w~~~~p~~~g~w~~~~  941 (990)
T TIGR00239       862 LDPEEVKRLVLCSGKVYYDLSVHEQRRENGDKDLAILRIEQLYPFPHKGLKELLEPYPNLKEIVWCQEEPLNQGAWGYSE  941 (990)
T ss_pred             CCHHHCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf             45113003233336122346666655413641010101122156754789999852145100223112433445310013


Q ss_pred             HHHHHHHHHC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7699998750-56776018975366467233867899999999999871
Q gi|254781051|r  909 PYLEKVLHSI-GADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL  956 (957)
Q Consensus       909 ~rl~~~l~~~-~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~li~~a~  956 (957)
                      |++..+++.. +.+..+++|+||+++++||.|+...|.+++..++..++
T Consensus       942 ~~~~~~~~~~d~~~d~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~  990 (990)
T TIGR00239       942 PYLTEVLPEGDKYKDVKLRYAGRPPSGSPAVGYPSLHLKEEDNLLKDAL  990 (990)
T ss_pred             CHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             1022212454321210221216775555322413566555666775419


No 7  
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00  E-value=0  Score=1047.57  Aligned_cols=262  Identities=60%  Similarity=1.049  Sum_probs=256.1

Q ss_pred             HHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCC--CCCC
Q ss_conf             99999864033622225646589999999999987379107998067655268999885379899999855887--4322
Q gi|254781051|r  224 FEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKG--PSEK  301 (957)
Q Consensus       224 FE~FL~~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~--~~~~  301 (957)
                      ||+|||+||+|+|||||||||||||+|++||++|++.||++||||||||||||||+|||+||++.||+||+|+.  |+..
T Consensus         1 FE~FL~~Kf~g~KRFslEG~EslIp~l~~li~~a~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~eF~g~~~~~~~~   80 (265)
T cd02016           1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDD   80 (265)
T ss_pred             CHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC
T ss_conf             94046561888745415668899999999999998769867998256665188999986417999998527998896324


Q ss_pred             CCCCCCCCCCCEEEEEEEC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf             3455510015026889835-961899971787731000445532367777641666544555654454047888625753
Q gi|254781051|r  302 EYSGDVKYHLGLCCNRQIC-GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAA  380 (957)
Q Consensus       302 ~~sGDVKYHLG~s~~~~~~-g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAA  380 (957)
                      .++||||||||+|++++++ |++|||+|+|||||||+|||||+|+||||||+++|.         ++++|||||||||||
T Consensus        81 ~~sGDVKYHlG~s~~~~~~~gk~v~lsL~~NPSHLEaVnPVv~G~~RAkQ~~~~~~---------~~~kvlpiliHGDAA  151 (265)
T cd02016          81 EGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDG---------ERDKVLPILIHGDAA  151 (265)
T ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEECCEECCHHHHHHHHHCCC---------CCCEEEEEEEECCCC
T ss_conf             66677163784245786269988999975897641677777444056567764487---------766378999966611


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             33467258876451067744365799984160201247010246778400112203405874267889999999999999
Q gi|254781051|r  381 FAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF  460 (957)
Q Consensus       381 faGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~y  460 (957)
                      |+||||||||||||+|+||+|||||||||||||||||+|+++|||+||||||||++||||||||||||||++|++||++|
T Consensus       152 faGQGvv~Etl~ls~l~gy~~GGtiHiivNNQIGFTT~p~~~Rss~Y~tDiaK~~~~Pi~HVNgddpeav~~a~~lA~~y  231 (265)
T cd02016         152 FAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEY  231 (265)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCHHHCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf             14565899876663389985476699998074100258134045764002688867988997689989999999999999


Q ss_pred             HHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf             9973897399864211256564354223557888
Q gi|254781051|r  461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMY  494 (957)
Q Consensus       461 R~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY  494 (957)
                      ||+|+|||||||||||||||||+|||+||||+||
T Consensus       232 R~~F~kDvvIDlvcYRr~GHNE~DeP~fTqP~mY  265 (265)
T cd02016         232 RQKFKKDVVIDLVCYRRHGHNELDEPSFTQPLMY  265 (265)
T ss_pred             HHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             9986998799978734568787788677687769


No 8  
>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=99.97  E-value=7e-27  Score=223.02  Aligned_cols=291  Identities=22%  Similarity=0.279  Sum_probs=240.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEC----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999989999986403362222----564658999999999998737910799806765526899988537989999985
Q gi|254781051|r  218 LVRAEGFEKFIDIKYKGAKRFG----ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEF  293 (957)
Q Consensus       218 L~~Ae~FE~FL~~Kf~g~KRFs----LEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF  293 (957)
                      ++....||.-+...|.-+++.|    -.|-|++-.++-..+      .-++.++.. ||+.-..|+.  |-|+..||+|+
T Consensus         3 ~m~~~r~ed~~~~~~~~~~~~g~~h~~~GqEA~~vg~~~~l------~~~D~~~~~-yR~~g~~la~--G~~~~~~~ae~   73 (303)
T pfam00676         3 MMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAAL------NPGDYVIPT-YRDHGNLLAR--GVSLEQVMAEL   73 (303)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCEEEEC-HHHHHHHHHC--CCCHHHHHHHH
T ss_conf             55999999999999973898246489888899999999976------999999806-6669999981--99999999997


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf             58874322345551001502688983596189997178773100044553236777764166654455565445404788
Q gi|254781051|r  294 KGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPL  373 (957)
Q Consensus       294 ~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpi  373 (957)
                      .|+......|.|.- -|+-++.        -...+.+-.|++-.--|++.|.+-|.+....              +.+.|
T Consensus        74 ~Gk~~g~~~Grggs-mh~~~~~--------~~~~~~~~~~~vg~~~~~avG~A~a~k~~~~--------------~~v~v  130 (303)
T pfam00676        74 TGNEAGCSKGKGGS-MHGYYAP--------KNNRFYGGNGIVGAQVPLGAGIALAAKYRGK--------------KEVAI  130 (303)
T ss_pred             CCCCCCCCCCCCCC-CCCCCCC--------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC--------------CCEEE
T ss_conf             78988998999997-7457666--------4455147874130482265668999996389--------------98799


Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf             86257533346725887645106774436579998416020124701024677840011220340587426788999999
Q gi|254781051|r  374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRV  453 (957)
Q Consensus       374 liHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~  453 (957)
                      ..+||+| +.||+++|+|||+.+...-   .|+||.|||.+.+|..++.+++..-+|.|+.+++|.++|+|.||++|..+
T Consensus       131 ~~~GDGa-~~~G~f~EalN~A~~~~lP---vifv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~  206 (303)
T pfam00676       131 TLFGDGA-TNQGQFFEALNFAALWKLP---VIFVCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQA  206 (303)
T ss_pred             EEECCCC-CCCCHHHHHHHHHHHCCCC---EEEEEEECCCCCCCCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHH
T ss_conf             9967997-5232999999987543898---79999527733666664514755488886525802896488658999999


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC-HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999997389739986421125656435422355-788888671899899999998644898989999999999999
Q gi|254781051|r  454 VRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ-PMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKY  532 (957)
Q Consensus       454 ~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQ-P~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~  532 (957)
                      ++-|+++..+.++.++|+..|||..||.+.|+|.... |..++...++..+...+.++|+++|++|+++++++.++.++.
T Consensus       207 ~~~a~~~aR~g~gP~lie~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~e  286 (303)
T pfam00676       207 VKFAAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKE  286 (303)
T ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             99999998648998899875113786678888767779899999886599699999999987999999999999999999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             775666541258
Q gi|254781051|r  533 LEAEYKESESYC  544 (957)
Q Consensus       533 l~~~~~~~k~~~  544 (957)
                      .+++++.++.-.
T Consensus       287 v~~a~~~A~~~p  298 (303)
T pfam00676       287 IEEAVKKAESDP  298 (303)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998086


No 9  
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89  E-value=2.9e-19  Score=165.46  Aligned_cols=296  Identities=20%  Similarity=0.225  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCE--E--CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             889999999999999899999864033622--2--256465899999999999873791079980676552689998853
Q gi|254781051|r  208 KEEQRDILDKLVRAEGFEKFIDIKYKGAKR--F--GADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMN  283 (957)
Q Consensus       208 ~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KR--F--sLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~  283 (957)
                      +|+-+.+++.|+.+-.||.-+..-|..-|=  |  .-.|-|+.-.++      +....-++.+.+ .||+.--.|+-  |
T Consensus         1 ke~ll~~yr~M~~~R~~e~~~~~l~~qG~i~g~~h~~~GqEa~~vg~------~~~l~~~D~i~~-~yR~hg~~la~--G   71 (315)
T TIGR03182         1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGL------IAALKPDDYVIT-SYRDHGHALAR--G   71 (315)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH------HHHCCCCCEEEE-CCCCHHHHHHH--C
T ss_conf             97999999999999999999999997798884623888769999999------997799888985-13378999995--8


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             79899999855887432234555100150268898359618999717877310004455323677776416665445556
Q gi|254781051|r  284 KLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       284 Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      -+++.||+|+-|+......|.|- --|++..          .+.+.+-.|.+-.--|++.|.+-|.+.+..         
T Consensus        72 ~~~~~~~ael~g~~~g~~~Grgg-s~H~~~~----------~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~---------  131 (315)
T TIGR03182        72 VPPKEVMAELTGRATGCSKGKGG-SMHMFDR----------EKNFYGGHGIVGAQVPLATGLAFANKYRGN---------  131 (315)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCC-CCCCCCC----------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCC---------
T ss_conf             99999999983678899999999-7764452----------127778873040374387769999986089---------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEEC
Q ss_conf             54454047888625753334672588764510677443657999841602012470102467784001122034058742
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVN  443 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN  443 (957)
                           .-+.+.-.||+|.+ ||+++|+|||+.+-.--   .|-||-|||.+-.|.....-+..--++-|+.++.|.+.|+
T Consensus       132 -----~~v~v~~~GDGa~~-~G~f~EalN~A~~~~lP---vifv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vD  202 (315)
T TIGR03182       132 -----DNVTACFFGDGAAN-QGQFYESFNMAALWKLP---VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVD  202 (315)
T ss_pred             -----CCEEEEEECCCCCC-CCHHHHHHHHHHCCCCC---EEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEEE
T ss_conf             -----98799995788665-34399999887414898---8999952874155767775366336665543699858983


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             67889999999999999997389739986421125656435422355788888671899899999998644898989999
Q gi|254781051|r  444 GDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQ  523 (957)
Q Consensus       444 ~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~  523 (957)
                      |.||++|..+++-|+++-.+-+.-++|...|||-.||.+.|.-.+--+.--+..+++ .+...+.++|+++|++|+++++
T Consensus       203 GnD~~av~~~~~~Ai~~~R~g~gP~lie~~tyR~~gHs~~D~~~YR~~~E~~~w~~r-DPi~~~~~~L~~~g~~~~~~~~  281 (315)
T TIGR03182       203 GMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRKR-DPIEKLKARLIEQGIASEEELK  281 (315)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHC-CHHHHHHHHHHHCCCCCHHHHH
T ss_conf             577899999999999997559998899987426888899873024698999988847-9399999999987999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999997756665412
Q gi|254781051|r  524 SLANNWHKYLEAEYKESES  542 (957)
Q Consensus       524 ~~~~~~~~~l~~~~~~~k~  542 (957)
                      ++.++.++..+++++.++.
T Consensus       282 ~i~~~~~~ev~~a~~~A~~  300 (315)
T TIGR03182       282 EIDKEVRAEVEEAVEFAEN  300 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999985


No 10 
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.89  E-value=2.4e-19  Score=166.05  Aligned_cols=287  Identities=18%  Similarity=0.220  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-EE---CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHH
Q ss_conf             99999999989999986403362-22---256465899999999999873791079980676552689998853798999
Q gi|254781051|r  214 ILDKLVRAEGFEKFIDIKYKGAK-RF---GADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSI  289 (957)
Q Consensus       214 iL~~L~~Ae~FE~FL~~Kf~g~K-RF---sLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~i  289 (957)
                      +++.++..-.||.-+..-|-.-| +|   +--|-|+.-.++-..+      .-++.+.+ .||+.--.|+-  |-|+..+
T Consensus         1 ~y~~M~~~R~~e~~~~~l~~~G~~~~~~~~~~GqEa~~vg~~~~l------~~~D~~~~-~yR~~~~~la~--G~~~~~~   71 (293)
T cd02000           1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAAL------RPGDWVFP-TYRDHGHALAR--GVDLKEM   71 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCEEEE-CCCHHHHHHHH--CCCHHHH
T ss_conf             978999999999999999978968655208787699999999868------99898981-45208999990--9999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf             99855887432234555100150268898359618999717877310004455323677776416665445556544540
Q gi|254781051|r  290 FYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSR  369 (957)
Q Consensus       290 F~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~  369 (957)
                      |+|+.|+......|.| ---|++.          ..+.+.+-.|.+-.--|++.|.+-|.+....              .
T Consensus        72 ~~e~~g~~~g~~~Gr~-gs~H~~~----------~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~--------------~  126 (293)
T cd02000          72 LAELFGKETGPCKGRG-GSMHIGD----------KEKNFFGGNGIVGGQVPLAAGAALALKYRGE--------------D  126 (293)
T ss_pred             HHHHHCCCCCCCCCCC-CCCCCCC----------CCCCEECCCCCCCCCCCHHHHHHHHHHHHCC--------------C
T ss_conf             9998257778888888-8685887----------1020504654124663347767899997589--------------9


Q ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHH
Q ss_conf             47888625753334672588764510677443657999841602012470102467784001122034058742678899
Q gi|254781051|r  370 VLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEA  449 (957)
Q Consensus       370 vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEa  449 (957)
                      -+.+...||+|. .||+++|+|||+.+..--   .|-||-|||.+-.|..++......-.|-|+.++.|.++|||.||++
T Consensus       127 ~v~v~~~GDGa~-~~G~f~EalN~A~~~~LP---vlfv~enN~yaist~~~~~~~~~~~~~r~~~~gi~~~~vDG~D~~~  202 (293)
T cd02000         127 RVAVCFFGDGAT-NEGDFHEALNFAALWKLP---VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLA  202 (293)
T ss_pred             CEEEEEECCCCC-CCCHHHHHHHHHHHCCCC---EEEEEEECCEECCCCHHHHCCCCCHHHHHHHCCCCEEEECCCCHHH
T ss_conf             889997168745-514799999988653798---7999974873023568873277448773532698769974878999


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999999997389739986421125656435422-35578888867189989999999864489898999999999
Q gi|254781051|r  450 VIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS-FTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANN  528 (957)
Q Consensus       450 v~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~-fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~  528 (957)
                      |..+++-|+++-.+-++.++|.+.|||-+||...|+|. +-.+.--+.-++ ..+...+.+.|+++|++|+++++++.++
T Consensus       203 v~~~~~~Ai~~~R~~~gP~lie~~TyR~~gHs~~dd~~~YR~~~E~~~~~~-~DPi~~~~~~L~~~g~~te~~~~~i~~e  281 (293)
T cd02000         203 VYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKK-RDPILRLRKYLIEAGILTEEELAAIEAE  281 (293)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999999999998538998899998561675568898656889999998884-7919999999998799999999999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99997756665
Q gi|254781051|r  529 WHKYLEAEYKE  539 (957)
Q Consensus       529 ~~~~l~~~~~~  539 (957)
                      .++..+++++.
T Consensus       282 i~~~V~~A~~~  292 (293)
T cd02000         282 VKAEVEEAVEF  292 (293)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999951


No 11 
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.89  E-value=4.2e-19  Score=164.22  Aligned_cols=314  Identities=18%  Similarity=0.195  Sum_probs=233.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC----CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             145778887988999999999999989999986403362222----5646589999999999987379107998067655
Q gi|254781051|r  198 EDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG----ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRG  273 (957)
Q Consensus       198 E~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFs----LEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRG  273 (957)
                      +...+...+|+|+-+.+++.|+..-.||.-+..-|..-|-+|    --|-|+.-.++-.      ...-++.+. -.||+
T Consensus        11 ~~~~~~~~ls~e~ll~~yr~M~l~R~fee~~~~l~~qG~i~g~~h~~~GqEA~~vg~~~------al~~~D~i~-~~yR~   83 (343)
T CHL00149         11 ATNLNSVNLNKEEALVLYRDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIK------ALKPTDYVC-STYRD   83 (343)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH------HCCCCCEEE-ECCHH
T ss_conf             88764589899999999999999999999999999779976064688868999999999------779999897-05152


Q ss_pred             HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHH
Q ss_conf             26899988537989999985588743223455510015026889835961899971787731000445532367777641
Q gi|254781051|r  274 RLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLK  353 (957)
Q Consensus       274 RLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~  353 (957)
                      .=-.|+-  |-|++.|++|+-|+......|.| =--|++...          ..+...-|++-.--|++.|.+-|.+.+.
T Consensus        84 h~~~la~--G~~~~~~~ael~Gk~~G~~~Grg-gsmH~~~~~----------~~~~g~~~ivg~~~p~A~G~A~a~~~~~  150 (343)
T CHL00149         84 HVHALSK--GVPPREVMAELFGKETGCSKGRG-GSMHLFSAP----------HNFLGGFAFIGEGIPIALGAAFQSIYRQ  150 (343)
T ss_pred             HHHHHHC--CCCHHHHHHHHCCCCCCCCCCCC-CCCCCCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             7879981--99999999997588899999999-977766722----------2712455343345306999999999875


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHH
Q ss_conf             66654455565445404788862575333467258876451067744365799984160201247010246778400112
Q gi|254781051|r  354 AGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISK  433 (957)
Q Consensus       354 ~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK  433 (957)
                      ....       ...++-+.|...||+|-+ ||.++|+|||+.+-.--   .|-||-|||.+-.|.....-+..--.+-|+
T Consensus       151 ~~~k-------~~g~~~V~v~ffGDGat~-eG~fhEalN~A~~~~LP---viFv~eNN~yaist~~~~~~~~~~i~~ra~  219 (343)
T CHL00149        151 QVLK-------DTQELRVTACFFGDGTTN-NGQFFECLNMAVLWKLP---IIFVVENNQWAIGMAHHRSTSEPEIHKKAE  219 (343)
T ss_pred             HHCC-------CCCCCCEEEEEECCCCCC-CCHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCHHHCCCCCHHHHHHH
T ss_conf             4302-------478982799983576332-03899999999984797---689998788146577323057633778886


Q ss_pred             HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             20340587426788999999999999999738973998642112565643542235578888867189989999999864
Q gi|254781051|r  434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMK  513 (957)
Q Consensus       434 ~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~  513 (957)
                      .++.|-+.|+|.|+++|..+++-|+++=.+-+.-++|...|||-.||-+.|...+--+.-= ..-+...+...+.++|++
T Consensus       220 ~yGi~~~~vDGnD~~av~~~~~~Ai~~aR~g~gP~lie~~TyR~~gHs~~D~~~YR~~~E~-e~w~~~DPi~~~~~~L~~  298 (343)
T CHL00149        220 AFGLPGIEVDGMDVLAVREVAKEAVERARSGQGPTLIEALTYRFRGHSLADPDELRSKQEK-EAWIARDPIKKLKSYIID  298 (343)
T ss_pred             HCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHH-HHHHHCCCHHHHHHHHHH
T ss_conf             5699720179878999999999999984569998899998607988789873556799999-988847969999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             489898999999999999977566654125
Q gi|254781051|r  514 NQVISKQELQSLANNWHKYLEAEYKESESY  543 (957)
Q Consensus       514 ~g~it~~e~~~~~~~~~~~l~~~~~~~k~~  543 (957)
                      .|++++++++++.++.++..+++++.+...
T Consensus       299 ~g~~~~~~~~~i~~~~~~~v~~a~~~A~~~  328 (343)
T CHL00149        299 NELVSQKELNKIQKEVKIEIEDAVEFAISS  328 (343)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             799999999999999999999999999838


No 12 
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88  E-value=8.8e-19  Score=161.76  Aligned_cols=295  Identities=15%  Similarity=0.160  Sum_probs=233.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE---ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf             7788879889999999999999899999864033622---2256465899999999999873791079980676552689
Q gi|254781051|r  201 DFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKR---FGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV  277 (957)
Q Consensus       201 ~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KR---FsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNV  277 (957)
                      ...+.+|+|+-..+++.++..-.||.-+..-|---|=   .+.-|-|+.-.+.      +....-++.++ -.||+.=-.
T Consensus        16 ~~~~~ls~e~ll~~yr~M~~~R~~e~~~~~l~~~G~ig~~~~~~GqEA~avg~------~~aL~~~D~i~-~~yR~hg~~   88 (341)
T TIGR03181        16 EPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGS------ALALRKDDWVF-PSYRDHAAM   88 (341)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH------HHHCCCCCEEE-ECCCCHHHH
T ss_conf             77899899999999999999999999999999679865767999739999999------97589879897-156723633


Q ss_pred             HHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99885379899999855887432234555100150268898359618999717877310004455323677776416665
Q gi|254781051|r  278 LSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIV  357 (957)
Q Consensus       278 L~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~  357 (957)
                      |+-  |-++.+||+|+.|+..-.   ..+                 ....+.+.-|.+-+--|++.|.+-|.+.+..|  
T Consensus        89 la~--G~~~~~~~ae~~G~~~G~---~~~-----------------~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~~--  144 (341)
T TIGR03181        89 LAR--GVPLVEILLYWRGDERGS---WDP-----------------EGVNILPPNIPIGTQYLHAAGVAYALKLRGED--  144 (341)
T ss_pred             EEC--CCCHHHHHHHHCCCCCCC---CCC-----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--
T ss_conf             127--998999999855977678---886-----------------01476888740134654147788899872999--


Q ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCC
Q ss_conf             44555654454047888625753334672588764510677443657999841602012470102467784001122034
Q gi|254781051|r  358 GEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI  437 (957)
Q Consensus       358 ~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~a  437 (957)
                                  -+.+...||+|.+ ||.++|+|||+.+-.--   .|-||-|||.+-.|.....-+..--.+-|+.++.
T Consensus       145 ------------~V~v~ffGDGA~~-eG~fhEalN~Aa~~~LP---viFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi  208 (341)
T TIGR03181       145 ------------NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP---VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGI  208 (341)
T ss_pred             ------------CEEEEEECCCCCC-CCHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCC
T ss_conf             ------------8899994688643-24699999999983899---8999961773577763342377369875142498


Q ss_pred             CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf             05874267889999999999999997389739986421125656435422-35578888867189989999999864489
Q gi|254781051|r  438 PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS-FTQPMMYKTIRSHKSVLQLYADSLMKNQV  516 (957)
Q Consensus       438 PI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~-fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~  516 (957)
                      |-+.|+|.|+++|..+++-|+++=.+-+.-++|...|||-.||.+.|+|. +--+--.+.-+++ .+...+.+.|+++|+
T Consensus       209 ~~~~vDG~D~~av~~a~~~Av~~~R~g~gP~liE~~TyR~~gHs~~Dd~~~YR~~~E~~~w~~~-DPi~~~~~~L~~~g~  287 (341)
T TIGR03181       209 PGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWRKK-DPILRLRKYLERKGL  287 (341)
T ss_pred             CEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHCCC
T ss_conf             8674488567999999999999985589988999985027886788998778898999998858-949999999998799


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             898999999999999977566654125
Q gi|254781051|r  517 ISKQELQSLANNWHKYLEAEYKESESY  543 (957)
Q Consensus       517 it~~e~~~~~~~~~~~l~~~~~~~k~~  543 (957)
                      +|+++++++.++.++..+++++.++.-
T Consensus       288 ~~e~e~~~i~~~i~~ev~~a~~~A~~s  314 (341)
T TIGR03181       288 WDEEQEEALEEEAEAEVAEAVAEALAL  314 (341)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999968


No 13 
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.77  E-value=9.6e-15  Score=131.23  Aligned_cols=312  Identities=18%  Similarity=0.202  Sum_probs=224.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCE---ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf             8879889999999999999899999864033-622---225646589999999999987379107998067655268999
Q gi|254781051|r  204 SNFSKEEQRDILDKLVRAEGFEKFIDIKYKG-AKR---FGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLS  279 (957)
Q Consensus       204 ~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g-~KR---FsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~  279 (957)
                      ..+++++-+.++++++..-.||.-+..-|-- ...   .+--|-|+.-.++...++.     =++.+++ .||+.=-+|+
T Consensus        22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~-----~~D~i~~-~YR~h~~~l~   95 (358)
T COG1071          22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRP-----GEDWIFP-TYRDHGHLLA   95 (358)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCCEEEC-CCCCCCEEEE
T ss_conf             568999999999999999999999999985777665757766679999999984388-----9887503-5576501002


Q ss_pred             HHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88537989999985588743223455510015026889835961899971787731000445532367777641666544
Q gi|254781051|r  280 QIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGE  359 (957)
Q Consensus       280 Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~  359 (957)
                      -  |-|++.||.|+.|+......|. +--.|++.. .         ..+++-.+-.-+--|.+.|.+-|.+.+..+    
T Consensus        96 ~--G~~~~~~~a~~~G~~~g~~kGr-~~~~h~~~~-~---------~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~----  158 (358)
T COG1071          96 R--GVPLKEIMAELLGKATGPCKGR-GGSMHYSDK-E---------KGFLGGSGIVGTQIPLAAGAALALKYRGTK----  158 (358)
T ss_pred             C--CCCHHHHHHHHHCCCCCCCCCC-CCCCCCCCC-C---------CCCCCCCCEECCCCCHHHHHHHHHHHHCCC----
T ss_conf             5--9999999999855245888888-886310110-0---------045787840466534799999999974899----


Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCE
Q ss_conf             55565445404788862575333467258876451067744365799984160201247010246778400112203405
Q gi|254781051|r  360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPI  439 (957)
Q Consensus       360 ~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI  439 (957)
                               .-+.+..-||.|-+ ||-++|+|||+.+-.--   .|-+|.|||-+--+.-.....+....+=|..++.|=
T Consensus       159 ---------~~Va~~~~GDGat~-qG~FhEalN~A~v~klP---vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipg  225 (358)
T COG1071         159 ---------DGVAVAFFGDGATN-QGDFHEALNFAAVWKLP---VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPG  225 (358)
T ss_pred             ---------CCEEEEEECCCCCC-CCHHHHHHHHHHHHCCC---EEEEEECCCCEEECCHHHCCCCHHHHHHHHCCCCCE
T ss_conf             ---------81899994578655-33399998999985698---799996687167045664033246775501058872


Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             8742678899999999999999973897399864211256564354223-557888886718998999999986448989
Q gi|254781051|r  440 FHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSF-TQPMMYKTIRSHKSVLQLYADSLMKNQVIS  518 (957)
Q Consensus       440 ~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~f-TQP~mY~~I~~hp~v~~~Y~~~Li~~g~it  518 (957)
                      +-|+|-||.||..+++-|+++=..=+--++|..+|||-.||...|+|.- -...-=+.-+ +..+...+.+.|++.|++|
T Consensus       226 v~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~s  304 (358)
T COG1071         226 VRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILS  304 (358)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHCCCCC
T ss_conf             787797799999999999999974899889999875358887779833367989998775-0694999999999768989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf             8999999999999977566654125-876566665
Q gi|254781051|r  519 KQELQSLANNWHKYLEAEYKESESY-CPEKLGLLH  552 (957)
Q Consensus       519 ~~e~~~~~~~~~~~l~~~~~~~k~~-~~~~~~~~~  552 (957)
                      +++.+++.++.++..+++.+.++.. .|.....+.
T Consensus       305 ee~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~  339 (358)
T COG1071         305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFE  339 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99999999999999999999997089998467651


No 14 
>pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Probab=99.70  E-value=2.3e-16  Score=143.51  Aligned_cols=171  Identities=30%  Similarity=0.395  Sum_probs=149.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf             64211478988898863583157850100223332302799977888445563442789845999824311110134320
Q gi|254781051|r  603 GIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEY  682 (957)
Q Consensus       603 ~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEy  682 (957)
                      .+.|-.|-..|..-++.+.-.|-+-|+|+..|||.+.....+.+                ++=.++|.+++|.+.+|+-.
T Consensus         2 ~~~~r~a~~~al~~~~~~d~~vv~~~~D~~~g~~~~~~~~~~~~----------------~~~R~~~~gIaE~~~vg~a~   65 (174)
T pfam02779         2 KIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLLHPQ----------------GEGRVIDTGIAEQAMVGIAN   65 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCC----------------CCCCEEECCCCHHHHHHHHH
T ss_conf             76499999999999997798999994877887551332465877----------------89856765817799999999


Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEE
Q ss_conf             22113865311100002442454102256554202576233368-13543688888887656440578875214378269
Q gi|254781051|r  683 GYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSN-LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYV  761 (957)
Q Consensus       683 Gys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sg-lvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V  761 (957)
                      |+|+.-.  +.+||.||+||.   |..-++.|...-++|+.... ++...|+|+.++||.|.|-..+.++..+-  ||.|
T Consensus        66 G~A~~G~--~~iv~~~f~~F~---~~r~~~~i~~~~~~~~~~v~~v~~~~g~~~g~~G~tHhs~~~~a~~~~iP--gl~V  138 (174)
T pfam02779        66 GMALHGL--LPPVEATFGDFA---NIRADAAIRHYAALGKLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIP--GLKV  138 (174)
T ss_pred             HHHHHCC--CCCCCHHHHHHH---HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCC--CCEE
T ss_conf             9997099--641112178888---88659999999985899998786664602567715465642899997589--9889


Q ss_pred             EECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHC
Q ss_conf             72488999999999974353488689856602210
Q gi|254781051|r  762 ANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLR  796 (957)
Q Consensus       762 ~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR  796 (957)
                      +.|++|.+.+++||..+.++..+|.+++.||+|+|
T Consensus       139 ~~Ps~~~da~~ll~~ai~~~~~~Pv~i~~~r~~~~  173 (174)
T pfam02779       139 VRPSDPAEAKGLLRAAIRRDDDDPVVFRLPRQLLR  173 (174)
T ss_pred             EECCCHHHHHHHHHHHHHCCCCCCEEEEECHHHCC
T ss_conf             96199999999999999648998389983077678


No 15 
>KOG0225 consensus
Probab=99.60  E-value=2.7e-12  Score=112.68  Aligned_cols=303  Identities=21%  Similarity=0.274  Sum_probs=224.6

Q ss_pred             HHCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC----CCHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8414-57788879889999999999999899999864033622225----646589999999999987379107998067
Q gi|254781051|r  196 TIED-YDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA----DGSEVIIPAIEEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       196 riE~-~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsL----EG~EslIP~L~~ii~~a~~~Gv~eiviGMa  270 (957)
                      ++|. +.....+++++-..+++.+..---||--...-|--.|=+|-    .|-|+.-.+|+..|..+     +.||-.- 
T Consensus        45 ~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~-----D~iItsY-  118 (394)
T KOG0225          45 KLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKS-----DSIITSY-  118 (394)
T ss_pred             ECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCCC-----CCEEEEE-
T ss_conf             7157998159950888999999999999999999998865211213663265799999999854677-----7447776-


Q ss_pred             CCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE---EECCCEEEEEECCCCCCCHHCCHHHHHHHH
Q ss_conf             65526899988537989999985588743223455510015026889---835961899971787731000445532367
Q gi|254781051|r  271 HRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR---QICGKDVKLLLQSNPSHLEFVDPVVIGSVR  347 (957)
Q Consensus       271 HRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~---~~~g~~v~lsL~~NPSHLEaVnPVv~G~~R  347 (957)
                         |--..+=+.|-+...||+|..|...--..|       .|.|-..   .+-|+.=-|         -|--|+-.|.+-
T Consensus       119 ---R~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kG-------KGGSMHmy~k~FyGGnGIV---------GAQiPLGaGia~  179 (394)
T KOG0225         119 ---RCHGWTYLRGVSVREVLAELMGRQAGCSKG-------KGGSMHMYAKNFYGGNGIV---------GAQIPLGAGIAF  179 (394)
T ss_pred             ---EEEEEEEECCCCHHHHHHHHHCCCCCCCCC-------CCCCEEEECCCCCCCCCEE---------CCCCCCCCCHHH
T ss_conf             ---520588643861999999984621255667-------7861055032334766423---------257773112899


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHH-CCCCC
Q ss_conf             77764166654455565445404788862575333467258876451067744365799984160201247010-24677
Q gi|254781051|r  348 ARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSS-ARSCT  426 (957)
Q Consensus       348 AkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d-~RSs~  426 (957)
                      |.+.++.+              -+++.+-||.| |-||-+.|.+||+.|=.--   .|-|+-||--|.-|+... +-|+-
T Consensus       180 A~kY~~~~--------------~v~~alYGDGA-aNQGQ~fEa~NMA~LW~LP---~IFvCENN~yGMGTs~~Rasa~te  241 (394)
T KOG0225         180 AQKYNRED--------------AVCFALYGDGA-ANQGQVFEAFNMAALWKLP---VIFVCENNHYGMGTSAERASASTE  241 (394)
T ss_pred             HHHHCCCC--------------CEEEEEECCCC-CCCHHHHHHHHHHHHHCCC---EEEEECCCCCCCCCCHHHHHCCHH
T ss_conf             99743688--------------65999954665-4440389885399986898---799982688766760343203827


Q ss_pred             CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHCCCHHH
Q ss_conf             84001122034058742678899999999999999973897399864211256564354-22355788888671899899
Q gi|254781051|r  427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDE-PSFTQPMMYKTIRSHKSVLQ  505 (957)
Q Consensus       427 Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~De-P~fTQP~mY~~I~~hp~v~~  505 (957)
                      |-+   +.--.|=+||+|-|+-||-.|+++|.+|-.+=+--++..+..||-+||.-.|. -++----=-+..++...+..
T Consensus       242 yyk---RG~yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~  318 (394)
T KOG0225         242 YYK---RGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIE  318 (394)
T ss_pred             HHH---CCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHH
T ss_conf             775---06878755787831245899999999997537998799986346546546899865211899998876058489


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999998644898989999999999999775666541258
Q gi|254781051|r  506 LYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYC  544 (957)
Q Consensus       506 ~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~  544 (957)
                      ...++||+.++.|++|++++.++.++..|.+.+.++.-.
T Consensus       319 ~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p  357 (394)
T KOG0225         319 GLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASP  357 (394)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999870366799999999999999999998763289


No 16 
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.39  E-value=2.3e-12  Score=113.17  Aligned_cols=164  Identities=26%  Similarity=0.245  Sum_probs=124.5

Q ss_pred             CHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCC
Q ss_conf             114789888988635-8315785010022333230279997788844556344278984599982431111013432022
Q gi|254781051|r  606 WSMAESLAFGSLCYE-GYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGY  684 (957)
Q Consensus       606 W~~AE~LA~~SLl~e-G~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGy  684 (957)
                      |..|-.-|+..|+.+ +..|.+.|+|++.+|..+++.+..+.+..           .+.+  ++|.++||.+.+|+..|+
T Consensus         2 ~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~-----------~~~r--~i~~gIaE~~~vg~a~Gl   68 (168)
T smart00861        2 TRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGL-----------GPGR--VIDTGIAEQAMVGFAAGL   68 (168)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCC-----------CCCC--EEECCCCHHHHHHHHHHH
T ss_conf             189999999999856997199983674887577536610444456-----------9987--564483789999987599


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC-CCCCCCCCHH-HHHHHCCCCCEEEE
Q ss_conf             113865311100002442454102256554202576233368135436888888-8765644057-88752143782697
Q gi|254781051|r  685 SLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQ-GPEHSSARLE-RFLQMCAENNMYVA  762 (957)
Q Consensus       685 s~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvllLPHGyeGq-GPEHSSaRlE-RfLQl~a~~N~~V~  762 (957)
                      |+..   +..|.++|.+|...|.-.|.++++.   +  +..-++...++|+.|+ ||.|.|-..+ .|..+.   ||.|+
T Consensus        69 A~~G---~~pi~~~~~~f~~~a~~qi~~~~~~---~--~~~~v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip---~~~v~  137 (168)
T smart00861       69 ALAG---LRPVVAIFFTFFDRAKDQIRSDGAM---G--RVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIP---GLKVV  137 (168)
T ss_pred             HHCC---CCCCCCHHHHHHHHHHHHHHHHHHC---C--CCCEEEEEECEEEECCCCCHHCCCCHHHHHHHCC---CCEEE
T ss_conf             8759---9642102357887589999865340---6--6773788601005668864110444388886179---97899


Q ss_pred             ECCCHHHHHHHHHHHHCCCCCCCEEEECCCH
Q ss_conf             2488999999999974353488689856602
Q gi|254781051|r  763 NCTSPANYFHILRRQIYDRSSRPLIMMAPKS  793 (957)
Q Consensus       763 ~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKs  793 (957)
                      .|++|.+..++||+++..+.+.|.|.+++|+
T Consensus       138 ~P~~~~e~~~~l~~a~~~~~~p~~i~l~~~~  168 (168)
T smart00861      138 APSDPAEAKGLLRAAIRRDDGPPVIRLERKS  168 (168)
T ss_pred             EECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             7099999999999998488998899973899


No 17 
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.24  E-value=7.9e-07  Score=71.34  Aligned_cols=409  Identities=17%  Similarity=0.175  Sum_probs=234.2

Q ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             73100044553236777764166654455565445404788862575333467258876451067744365799984160
Q gi|254781051|r  333 SHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ  412 (957)
Q Consensus       333 SHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ  412 (957)
                      .||-.==.++.|++.|+.-..            ...+|.+|.  ||++.. .|+++|.+++..--  . +--|=|+=+|+
T Consensus       113 G~~g~gls~avGmA~A~~~~~------------~~~~v~~v~--GDG~l~-eG~~~EA~~~Ag~~--~-~nlivi~ddN~  174 (581)
T PRK12315        113 GHTSTSIALATGMAKARDLKG------------EKENIIAVI--GDGSLS-GGLAFEGLNNAAEL--K-SNLIIIVNDNQ  174 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHHHC------------CCCCEEEEE--CCCHHH-HHHHHHHHHHHCCC--C-CCEEEEEECCC
T ss_conf             763789999999999999729------------998489998--551344-01679998763458--9-85599997688


Q ss_pred             EECCCC-------CHHCCCC--CCCCHHHHHHCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf             201247-------0102467--78400112203405874-2678899999999999999973897399864211256564
Q gi|254781051|r  413 IGFTTN-------PSSARSC--TYASDISKSIGIPIFHV-NGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNE  482 (957)
Q Consensus       413 IGFTT~-------p~d~RSs--~Y~TDiAK~i~aPI~HV-N~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE  482 (957)
                      |.-.-+       -.+.|.+  .-..++-+.++.-++.| ||.|+|++..|.+-|-    ...+-++|-.....=+|.. 
T Consensus       175 isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~DGhd~~~i~~al~~ak----~~~~P~~I~v~T~kG~G~~-  249 (581)
T PRK12315        175 MSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDLESLIELFKEVK----DIDHPIVLHIHTLKGKGYK-  249 (581)
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH----HCCCCEEEEEEECCCCCCC-
T ss_conf             02358730777777887750375501069984986882579999999999999986----3699979999967863666-


Q ss_pred             CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             35422355788888671899899999998644898989999999999999775666541258765666656862666778
Q gi|254781051|r  483 GDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSV  562 (957)
Q Consensus       483 ~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v  562 (957)
                         |.-..|.-|     |-                                         ..|-          +++|+-
T Consensus       250 ---~a~~~~~~~-----H~-----------------------------------------~~pf----------~~~~g~  270 (581)
T PRK12315        250 ---PAEENKEAF-----HW-----------------------------------------HMPF----------DLETGQ  270 (581)
T ss_pred             ---CCCCHHHHH-----CC-----------------------------------------CCCC----------CCCCCC
T ss_conf             ---110357763-----66-----------------------------------------5676----------613465


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf             99999999887436899862056778889989987334356421147898889886358315785010022333230279
Q gi|254781051|r  563 SKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI  642 (957)
Q Consensus       563 ~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHav  642 (957)
                      ++            .++..                      -+|..+-.=+...++.++-+|---.-|..-+|.      
T Consensus       271 ~~------------~~~~~----------------------~~~~~~~~~~l~~~~~~~~~ivai~a~~~~~~g------  310 (581)
T PRK12315        271 SK------------VPASG----------------------ESYSSVVLDYLLKKIEEGKPVVAINAAIPGVFG------  310 (581)
T ss_pred             CC------------CCCCC----------------------CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC------
T ss_conf             45------------67875----------------------698999999999998746441542135787657------


Q ss_pred             EEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99778884455634427898459998243111101343202211386531110000244245410225655420257623
Q gi|254781051|r  643 LCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWL  722 (957)
Q Consensus       643 l~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~  722 (957)
                               ...+..-.  ..+|  ++--..|.+..+|--|.++.   ++.-.-+-|++|..   --+||.+...-   .
T Consensus       311 ---------l~~f~~~~--P~R~--i~~GIaEq~mv~~a~GlA~~---G~~P~~~~fstFl~---ra~dqi~~dia---l  368 (581)
T PRK12315        311 ---------LKEFRKKY--PDRY--VDVGIAEQHSVAFASGMAAA---GARPVIFVNSTFLQ---RAYDQLSHDLA---I  368 (581)
T ss_pred             ---------CCHHHHHC--CCCE--EECCHHHHHHHHHHHHHHHC---CCEEEEEEECHHHH---HHHHHHHHHHH---H
T ss_conf             ---------53132418--5016--75160888999998789757---99646888442331---46889989999---8


Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCC
Q ss_conf             336813543688-8888876564405788752143782697248899999999997435348868985660221080126
Q gi|254781051|r  723 CTSNLVCLLPHG-YEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVV  801 (957)
Q Consensus       723 ~~sglvllLPHG-yeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~  801 (957)
                      +....++..-|| --+-||-|-.  +|-.--|.+=.||.|..|+.+.+.-.+++--+.+ ...|.++-.|+.-+....  
T Consensus       369 ~~lpv~~~~~~~~igedGpTHq~--iedia~lR~iPN~~V~~PaD~~E~~~~~~~Al~~-~~gP~~iR~pr~~~~~~~--  443 (581)
T PRK12315        369 NNNPAVMIVFGGSISGNSVTHQG--SFDIAMISNIPNLVYLAPTSKEELIAMLEWALTQ-HEHPVAIRVPEHVLESGP--  443 (581)
T ss_pred             HCCCEEEEEECCCCCCCCCCCCC--HHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCC--
T ss_conf             36998999961777899987514--7788997256883899319999999999999971-699589993787677787--


Q ss_pred             CCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCC---CCCEEEEEEECCCCCHHHH
Q ss_conf             8878937998603515776433444544457954576899868857899999999769---9868999840148682899
Q gi|254781051|r  802 SSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRN---IADIYLLRIEQLYPFPEDY  878 (957)
Q Consensus       802 S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~---~~~vaivRiEqLyPfP~~~  878 (957)
                      ....++..|. . .++.+              .+  +-+|+++|-....-+++.+...   --++.+|-+--+-||..+.
T Consensus       444 ~~~~~~~~g~-~-~v~~~--------------G~--dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~~vkPlD~~~  505 (581)
T PRK12315        444 TVDTDYSTLN-Y-EVAKA--------------GE--KVAILALGDFYELGEKVAKKLKEKLGIDATLINPKFITGLDEEL  505 (581)
T ss_pred             CCCCCCCCCC-E-EEEEC--------------CC--CEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
T ss_conf             6555555441-8-99755--------------89--88999860778999999999875129987999577248879999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCC-HHHHHHHH
Q ss_conf             9999853799839980678531784-57899769
Q gi|254781051|r  879 LIKVLSRFVQAEIVWCQEEPQNMGA-WTFIEPYL  911 (957)
Q Consensus       879 l~~~l~~y~~~e~vW~QEEp~N~Ga-W~~v~~rl  911 (957)
                      +....+.|   +.+.+=||+--.|+ ++.|...+
T Consensus       506 l~~~~~~~---~~ivtvEeh~~~GGlGs~v~~~l  536 (581)
T PRK12315        506 LENLKEDH---ELVVTLEDGILDGGFGEKIARYY  536 (581)
T ss_pred             HHHHHHCC---CEEEEEECCCCCCCHHHHHHHHH
T ss_conf             99998249---87999927976645899999999


No 18 
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.24  E-value=1.3e-08  Score=84.76  Aligned_cols=296  Identities=18%  Similarity=0.215  Sum_probs=199.3

Q ss_pred             HHHHHHHCCCEEEEECCCCCC--CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCC
Q ss_conf             889886358315785010022--333230279997788844556344278984599982431111013432022113865
Q gi|254781051|r  613 AFGSLCYEGYKVRLSGQDCER--GTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLN  690 (957)
Q Consensus       613 A~~SLl~eG~~VRlsGQD~~R--GTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~  690 (957)
                      |.+-=+..--.|=+-|||+..  |.|-.                -+-|.+.=|.=-|.|.|+||.|..|.--|.++.-  
T Consensus       151 a~~eEM~rD~~Vfv~GEdVg~~gG~fkv----------------T~GL~~~FG~~RV~DTPISE~gi~G~aiGaA~~G--  212 (464)
T PRK11892        151 AMAEEMRRDEDVFVMGEEVAEYQGAYKV----------------TQGLLQEFGARRVIDTPITEHGFAGVGVGAAMAG--  212 (464)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCC----------------CHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCC--
T ss_conf             9999985099889980400114870103----------------4227877583042078999567889999999759--


Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC------CEEECCCCC-CCCCCCCCCCCHHHHHHHCCCCCEEEEE
Q ss_conf             311100002442454102256554202576233368------135436888-8888765644057887521437826972
Q gi|254781051|r  691 ALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSN------LVCLLPHGY-EGQGPEHSSARLERFLQMCAENNMYVAN  763 (957)
Q Consensus       691 ~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sg------lvllLPHGy-eGqGPEHSSaRlERfLQl~a~~N~~V~~  763 (957)
                      --.|=|-||.||+-.|   +||-|..+ +||.-+||      ||+-.|.|- -|+||.||- .+|-|+  +.--.+.|+.
T Consensus       213 lRPIvEimf~dF~~~A---~DQIiN~A-AK~rymsgGq~~~PiViR~p~G~g~~~gaqHSQ-s~e~~f--ahiPGLkVv~  285 (464)
T PRK11892        213 LKPIVEFMTFNFAMQA---IDQIINSA-AKTLYMSGGQMGCPIVFRGPNGAAARVGAQHSQ-DYAAWY--SHIPGLKVVA  285 (464)
T ss_pred             CCCEEEEECHHHHHHH---HHHHHHHH-HHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC-CHHHHH--HCCCCCEEEE
T ss_conf             9847998603168999---99999888-886404588614777998136666677766655-767786--2178707995


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEE
Q ss_conf             48899999999997435348868985660221080126887893799860351577643344454445795457689986
Q gi|254781051|r  764 CTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILC  843 (957)
Q Consensus       764 ~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~c  843 (957)
                      ||||+....||+--+..+  -|.|.+-+|.|.+.+.-+...+|+.--- -+.-|-             ..-+.| .||=.
T Consensus       286 Pstp~DAkGLLkaAIrd~--nPVIflE~k~LY~~~~eVP~~~d~~iPi-GkA~V~-------------reG~Dv-TIVsy  348 (464)
T PRK11892        286 PYSAADAKGLLKAAIRDP--NPVIFLENEILYGQSFEVPKLDDFVLPI-GKARIH-------------REGKDV-TIVSF  348 (464)
T ss_pred             ECCHHHHHHHHHHHHHCC--CCEEEEEEHHHCCCCCCCCCCCCCCCCC-CCEEEE-------------CCCCCE-EEEEC
T ss_conf             189999999999997389--9889996021037840268754444566-405896-------------379978-99975


Q ss_pred             CCHHHHHHHHHHHH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH-HHCCCC
Q ss_conf             88578999999997-6998689998401486828999999853799839980678531784578997699998-750567
Q gi|254781051|r  844 TGKVYYDLLDNRDM-RNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVL-HSIGAD  921 (957)
Q Consensus       844 sGKvyydL~~~r~~-~~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l-~~~~~~  921 (957)
                      +.-+++-|..+..- ..--++-+|-+-.|+||..+.|.+-++|-.  .+|=|+|-+++.|-++-+-.++.+-. ..|   
T Consensus       349 G~mv~~aleAAe~La~eGIs~EVIDLRtL~PLD~etI~~SVkKTg--RlvVVeE~~~~~GvgaEIaA~I~E~aF~~L---  423 (464)
T PRK11892        349 SIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTN--RLVTVEEGWPQSGVGAEIAARVMEQAFDYL---  423 (464)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHC---
T ss_conf             726999999999998739978999788678899899999999879--899996898888679999999999879860---


Q ss_pred             CCEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf             760189753664672338-6789999999999987
Q gi|254781051|r  922 YSRVRYVGRLPSASTAVG-HMSRHLEQLSSFIEDA  955 (957)
Q Consensus       922 ~~~~~y~gR~~~aspA~G-~~~~H~~e~~~li~~a  955 (957)
                      ...+.-|+-+-.+.|... .-+...-.-++|++.+
T Consensus       424 dAPv~RV~~~D~PiP~a~~LE~~~lP~~~~Iv~Av  458 (464)
T PRK11892        424 DAPVLRVTGKDVPMPYAANLEKLALPSVAEVVEAV  458 (464)
T ss_pred             CCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf             89848978898798889779977589999999999


No 19 
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.23  E-value=8.7e-09  Score=86.15  Aligned_cols=308  Identities=20%  Similarity=0.250  Sum_probs=201.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCEEEEEECCCCCEEEEH
Q ss_conf             899862056778889989987334356421147898889886358315785010022-3332302799977888445563
Q gi|254781051|r  577 LPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCER-GTFSHRHAILCDQETGKRYFPL  655 (957)
Q Consensus       577 ~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~R-GTFshRHavl~dq~t~~~y~pL  655 (957)
                      -|..|..-|....--     ..-+-+.+-..-|=.-|..-.|.+.-.|=+-|||++. |.|-.                -
T Consensus        13 ~~~~~~~~~~~~~~~-----~~g~~~~~t~~~Ai~~al~~~m~~d~~v~~~GeDv~~GG~f~~----------------T   71 (355)
T PTZ00182         13 QPSEFSFAPRFGSEE-----SSGNTKKMNLFQAINSALDIALSKDPKTVLFGEDVAFGGVFRC----------------S   71 (355)
T ss_pred             CCCCEEECCCCCCCC-----CCCCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH----------------H
T ss_conf             545424269999877-----7888226579999999999999659988998477366766664----------------0


Q ss_pred             HHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-------CCE
Q ss_conf             4427898459998243111101343202211386531110000244245410225655420257623336-------813
Q gi|254781051|r  656 GNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTS-------NLV  728 (957)
Q Consensus       656 ~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~s-------glv  728 (957)
                      ..|.+.-|+--|.|.|+||.+..|+--|.++.--  -.+=|-||+||.   +.-+||-+..+ +||.-+|       .||
T Consensus        72 ~gL~~~fGp~Rv~DtPIsE~~ivG~AvG~A~~G~--rPVvei~f~dFl---~~A~DQIvn~a-Ak~~~~sgg~~~~~plv  145 (355)
T PTZ00182         72 LGLLKKYGEQRVFNTPLCEQGIVGFAIGLAAVGW--TAIAEIQFADYI---FPAFDQIVNEA-AKYRYRSGGQFDCGKLT  145 (355)
T ss_pred             HHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCC--CEEEEEEHHHHH---HHHHHHHHHHH-HHHHHCCCCEEECCEEE
T ss_conf             2599985885003178558889999999997699--359997568789---99999999998-77750038703024289


Q ss_pred             EECCCCCCCC-CCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHH
Q ss_conf             5436888888-876564405788752143782697248899999999997435348868985660221080126887893
Q gi|254781051|r  729 CLLPHGYEGQ-GPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDM  807 (957)
Q Consensus       729 llLPHGyeGq-GPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~  807 (957)
                      +-.|-|.-|. ||.|| ..+|-++  +.--|+.|+.||||+...++|+.-+..  .-|.|++-||.|.|....--+.+++
T Consensus       146 iR~p~G~~~~~g~~HS-qs~ea~f--~~iPGLkVv~Ps~p~DAkgLl~sAi~d--~~PVif~E~k~Ly~~~~~~vp~~~~  220 (355)
T PTZ00182        146 IRSTWGAVGHGGLYHS-QSPEAYF--AHCAGLKIVVPSDPYQAKGLLLACIRD--PNPVIFFEPKILYRSAVEEVPPDDY  220 (355)
T ss_pred             EECCCCCCCCCCCCCC-CCHHHHH--HCCCCCEEEECCCHHHHHHHHHHHHCC--CCCEEEEECHHHCCCCCCCCCCCCC
T ss_conf             9537888777886101-7969998--268997899349999999999876107--9858999654540567667885445


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCC---CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             7998603515776433444544457954576899868857899999999769---9868999840148682899999985
Q gi|254781051|r  808 TCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRN---IADIYLLRIEQLYPFPEDYLIKVLS  884 (957)
Q Consensus       808 ~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~---~~~vaivRiEqLyPfP~~~l~~~l~  884 (957)
                      .-      -|       ++..+ ..+-+.  =.|++.|..-+..+++-++..   --++-+|-+--|.|+..+.|.+-++
T Consensus       221 ~i------pl-------Gka~i-~r~G~D--vTIVa~G~mv~~al~AA~~L~~e~GIs~EVIDlRtL~PlD~e~I~~SV~  284 (355)
T PTZ00182        221 TL------EL-------GKAEV-VKEGKD--VTMVGYGSQVGVMKKAAELAEKEHGISVEVIDLQTILPWDRETVADSVK  284 (355)
T ss_pred             CC------CC-------CEEEE-EEECCC--EEEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             44------46-------66799-961794--7999965689999999999975029977999547468999999999999


Q ss_pred             HCCCCEEEEECCCCCCCCCHHHHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             379983998067853178457899769999-87505677601897536646723
Q gi|254781051|r  885 RFVQAEIVWCQEEPQNMGAWTFIEPYLEKV-LHSIGADYSRVRYVGRLPSASTA  937 (957)
Q Consensus       885 ~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~-l~~~~~~~~~~~y~gR~~~aspA  937 (957)
                      |-.  .++-|+|.++.-|-=+-|-.++.+- +..+   ...+.-++-+-.+.|.
T Consensus       285 KTg--rllvVeE~~~~~G~gsEI~a~i~E~~f~~L---~ap~~Rv~~~d~P~P~  333 (355)
T PTZ00182        285 KTG--RVIVTHEAPKTSGMGAEIAATIQERCFLSL---EAPIKRVCGYDTPFPL  333 (355)
T ss_pred             HHC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHC---CCCCEEECCCCCCCCH
T ss_conf             879--899998899888689999999999868750---7986897889888986


No 20 
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.22  E-value=1.5e-08  Score=84.36  Aligned_cols=294  Identities=16%  Similarity=0.217  Sum_probs=195.3

Q ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf             88988635831578501002233323027999778884455634427898459998243111101343202211386531
Q gi|254781051|r  613 AFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNAL  692 (957)
Q Consensus       613 A~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L  692 (957)
                      |..-++.+-=.|=+-|||+++              -|-.|---..|.+.-+.=-|.|.++||.+.+|+--|.++.-  --
T Consensus        13 al~~~m~~d~~v~~~GeDv~~--------------~gg~f~~t~gl~~kfg~~Rv~dtpIaE~~~vG~A~GlA~~G--~r   76 (326)
T CHL00144         13 AIDEEMARDPRVAVIGEDVGH--------------YGGSYKVTKDLHPKYGDLRVLDTPIAENSFTGMAIGAAMTG--LR   76 (326)
T ss_pred             HHHHHHHHCCCEEEECCCCCC--------------CCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCC--CE
T ss_conf             999999759988998377675--------------67806750679987385510067735788999999887479--97


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHH-HHHHC----CCCCCEEECCCC-CCCCCCCCCCCCHHHHHHHCCCCCEEEEECCC
Q ss_conf             1100002442454102256554202-57623----336813543688-88888765644057887521437826972488
Q gi|254781051|r  693 TIWEAQFGDFANGAQVILDQFITAG-EQKWL----CTSNLVCLLPHG-YEGQGPEHSSARLERFLQMCAENNMYVANCTS  766 (957)
Q Consensus       693 ~iWEAQFGDF~NgAQviiDqfiss~-e~KW~----~~sglvllLPHG-yeGqGPEHSSaRlERfLQl~a~~N~~V~~~tt  766 (957)
                      .+=|.||+||.   +.-+||.+..+ --+|+    ...-+|.-.|-| +-|+||.||-. .|-+  ++.=.||.|+.||+
T Consensus        77 Piv~~~~~~F~---~~a~dQi~n~aa~~~~~~gg~~~vplvir~~~g~g~~~g~~Hs~~-~~a~--~~~iPgl~Vv~Ps~  150 (326)
T CHL00144         77 PVVEGMNMGFL---LLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LESY--FQAVPGLQIVACST  150 (326)
T ss_pred             EEEEEEHHHHH---HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCC-HHHH--HHCCCCCEEEECCC
T ss_conf             99997467788---999999999988986034786135799984777678875412445-6889--83389958995698


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHH--CCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEC
Q ss_conf             99999999997435348868985660221080126887893--7998603515776433444544457954576899868
Q gi|254781051|r  767 PANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDM--TCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCT  844 (957)
Q Consensus       767 pAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~--~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~cs  844 (957)
                      |.....+|+.=+.  ...|.+++-+|.|-+.+.-+. -+|+  .-|. - .|+              .+-+.|  .|+|.
T Consensus       151 ~~da~~ll~~ai~--~~~Pv~~~e~~~ly~~~~~vp-~~~~~~~~Gk-a-~v~--------------r~G~Dv--TIVa~  209 (326)
T CHL00144        151 PYNAKGLLKSAIR--SDNPVLFFEHVLLYNLKEEIP-DGEYLLPLEK-A-ELV--------------RDGEDI--TILTY  209 (326)
T ss_pred             HHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCC-CCCCCCCCCE-E-EEE--------------EECCCE--EEEEC
T ss_conf             7888999999997--289818995345578764477-6556654676-8-999--------------727987--99930


Q ss_pred             CHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH-HCCCC
Q ss_conf             8578999999997699--86899984014868289999998537998399806785317845789976999987-50567
Q gi|254781051|r  845 GKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVLH-SIGAD  921 (957)
Q Consensus       845 GKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l~-~~~~~  921 (957)
                      |-.-+.-+++-+....  -++-+|-+--|.||..+.|.+-++|..+  +|=+.|-+.+-|-=+-|-.++.+-.. .+   
T Consensus       210 G~mv~~al~Aae~L~~~gI~~eVIDlrtl~PlD~e~I~~sv~kT~r--lv~veE~~~~gG~Gsei~a~i~e~~f~~l---  284 (326)
T CHL00144        210 SRMRHHVIQAVKLLVTKGYDPEVIDLISLKPLDMTTISTSIKKTHK--VLIVEECMKTGGIGAELLALINENLFDEL---  284 (326)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHC---
T ss_conf             6779999999999997799768986045799999999999985498--99997699889789999999999758655---


Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHH-HHHHHH
Q ss_conf             760189753664672338678999999-999998
Q gi|254781051|r  922 YSRVRYVGRLPSASTAVGHMSRHLEQL-SSFIED  954 (957)
Q Consensus       922 ~~~~~y~gR~~~aspA~G~~~~H~~e~-~~li~~  954 (957)
                      ..++.-+|-+..+.|........-.-+ ++|++.
T Consensus       285 ~~p~~Ri~~~d~p~P~s~~lE~~~~p~~~~I~~a  318 (326)
T CHL00144        285 DAPIFRLSSQDVPTPYNGSLEEATVIQPEQIIEA  318 (326)
T ss_pred             CCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf             9997896889808989977998759999999999


No 21 
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.14  E-value=7.1e-08  Score=79.27  Aligned_cols=300  Identities=18%  Similarity=0.196  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCC
Q ss_conf             14789888988635831578501002--2333230279997788844556344278984599982431111013432022
Q gi|254781051|r  607 SMAESLAFGSLCYEGYKVRLSGQDCE--RGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGY  684 (957)
Q Consensus       607 ~~AE~LA~~SLl~eG~~VRlsGQD~~--RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGy  684 (957)
                      .-|=..|..-++.+--.|=+=|||+.  .|.|.                -...+.+.-|+=-++|.++||.+.+|+--|.
T Consensus         7 ~~ai~~al~~~~~~d~~v~~~geDv~~~~G~f~----------------~t~gl~~~fgp~R~~d~gIaEq~~vg~A~Gl   70 (327)
T PRK09212          7 REALRDAMREEMERDPKVFLMGEEVGEYQGAYK----------------VTQGLLEQFGPKRVIDTPITEHGFAGLAVGA   70 (327)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHH----------------HHHHHHHHHCCCCEECCCCCHHHHHHHHHHH
T ss_conf             999999999999559899998277664678035----------------4168999858750316774489999999989


Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC------CEEECCCCC-CCCCCCCCCCCHHHHHHHCCCC
Q ss_conf             113865311100002442454102256554202576233368------135436888-8888765644057887521437
Q gi|254781051|r  685 SLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSN------LVCLLPHGY-EGQGPEHSSARLERFLQMCAEN  757 (957)
Q Consensus       685 s~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sg------lvllLPHGy-eGqGPEHSSaRlERfLQl~a~~  757 (957)
                      ++.--  -.+=|-||.||.   +.-+||-+..+ +||+.+||      +|...|.|. -|+||.|| .-+|-++  +.=.
T Consensus        71 A~~G~--~Piv~~~~~~f~---~ra~dQI~n~~-ak~~~~~gg~~~vpvv~r~~~g~~~~~g~~Hs-~~~~a~~--~~iP  141 (327)
T PRK09212         71 AFAGL--RPIVEFMTFNFA---MQAIDQIVNSA-AKTNYMSGGQLKCPIVFRGPNGAAARVAAQHS-QCYASWY--AHIP  141 (327)
T ss_pred             HHCCC--CCEEEEEHHHHH---HHHHHHHHHHH-HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC-CCHHHHH--CCCC
T ss_conf             86799--448997556677---78999999988-87524127852301899817724678774333-1568896--2899


Q ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHH-HHCCCCCEEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf             826972488999999999974353488689856602210801268878-9379986035157764334445444579545
Q gi|254781051|r  758 NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLS-DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSH  836 (957)
Q Consensus       758 N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~-d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~  836 (957)
                      ||.|+.|++|++..-+|+. +.+ ...|.+++-+|.|.+.+.-+..-+ .+.-|.  -.|+-              +-+.
T Consensus       142 gl~Vv~Ps~~~d~~~ll~~-a~~-~~~Pvi~~e~~~ly~~~~~v~~~~~~~~iGK--a~vlr--------------eG~D  203 (327)
T PRK09212        142 GLKVVAPYFAADCKGLLKT-AIR-DNNPVIFLENEILYGHSHEVPDEEESIPFGK--AAILR--------------EGSD  203 (327)
T ss_pred             CCEEEECCCHHHHHHHHHH-HHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCE--EEEEE--------------ECCC
T ss_conf             9889964887788999999-876-5998499824434687656776530233776--89998--------------5797


Q ss_pred             CCEEEEECCHHHHHHHHHHHHCC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             76899868857899999999769--9868999840148682899999985379983998067853178457899769999
Q gi|254781051|r  837 IRRVILCTGKVYYDLLDNRDMRN--IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV  914 (957)
Q Consensus       837 v~rvi~csGKvyydL~~~r~~~~--~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~  914 (957)
                      |  .|+|+|-.-+.-+++-+...  --++.+|-+--|.|+..+.|.+..++..+  ++=|+|-..+-|-=+-|-.++.+-
T Consensus       204 v--TIva~G~mv~~al~AAe~L~~~GI~~eVIdl~tlkPlD~e~I~~sv~kT~~--lv~veE~~~~gG~Gsevaa~l~e~  279 (327)
T PRK09212        204 V--TIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNR--LVVVEEGWPFAGVGAEIAALIMKE  279 (327)
T ss_pred             E--EEEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCC--EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             4--999864578999999999997599867885212789999999999986197--899967987887899999999997


Q ss_pred             HHHCCCCCCEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHH
Q ss_conf             875056776018975366467233867899-99999999987
Q gi|254781051|r  915 LHSIGADYSRVRYVGRLPSASTAVGHMSRH-LEQLSSFIEDA  955 (957)
Q Consensus       915 l~~~~~~~~~~~y~gR~~~aspA~G~~~~H-~~e~~~li~~a  955 (957)
                      ....  -..++..+|.+..+.|..-....+ .-..++|++.+
T Consensus       280 ~f~~--L~~p~~rv~~~d~p~P~a~~LE~~~~p~~~~I~~av  319 (327)
T PRK09212        280 AFDY--LDAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAV  319 (327)
T ss_pred             HHHH--CCCCCEEECCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf             5864--589867968898089899768988498999999999


No 22 
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=98.86  E-value=2e-08  Score=83.40  Aligned_cols=156  Identities=24%  Similarity=0.373  Sum_probs=112.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCC--CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCC
Q ss_conf             98889886358315785010022--3332302799977888445563442789845999824311110134320221138
Q gi|254781051|r  611 SLAFGSLCYEGYKVRLSGQDCER--GTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNN  688 (957)
Q Consensus       611 ~LA~~SLl~eG~~VRlsGQD~~R--GTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~  688 (957)
                      ..|+.-++.+--.|=+-|||++.  |-|                ---..+.+.-++=-++|.+++|.+.+|+-.|.++. 
T Consensus         4 ~~al~~~~~~d~~v~~~g~dv~~~~g~~----------------~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl~-   66 (167)
T cd07036           4 NEALDEEMERDPRVVVLGEDVGDYGGVF----------------KVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-   66 (167)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCCH----------------HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC-
T ss_conf             9999999976989999957837477805----------------77479999857663237996889999999999985-


Q ss_pred             CCCCEEECCCCCCCCCCCHHHHHHHHHHH-HHHHC----CCCCCEEECCCCCC-CCCCCCCCCCHHHHHHHCCCCCEEEE
Q ss_conf             65311100002442454102256554202-57623----33681354368888-88876564405788752143782697
Q gi|254781051|r  689 LNALTIWEAQFGDFANGAQVILDQFITAG-EQKWL----CTSNLVCLLPHGYE-GQGPEHSSARLERFLQMCAENNMYVA  762 (957)
Q Consensus       689 p~~L~iWEAQFGDF~NgAQviiDqfiss~-e~KW~----~~sglvllLPHGye-GqGPEHSSaRlERfLQl~a~~N~~V~  762 (957)
                       -.-.++|.||.||..-   -+||.+... ..+|.    ....+|+..|+|.- |+||.|| ..+|-++.  .=.||.|+
T Consensus        67 -G~~Pvv~~~~~~Fl~~---a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~~~~~g~~Hs-~~~~a~~~--~iPgl~V~  139 (167)
T cd07036          67 -GLRPIVEIMFADFALP---AFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHS-QSLEAWFA--HIPGLKVV  139 (167)
T ss_pred             -CCEEEEEEEEHHHHHH---HHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCCCC-CCHHHHHC--CCCCCEEE
T ss_conf             -9937988622555400---59999977567612038940588899960667767453003-68799980--79996899


Q ss_pred             ECCCHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             248899999999997435348868985660
Q gi|254781051|r  763 NCTSPANYFHILRRQIYDRSSRPLIMMAPK  792 (957)
Q Consensus       763 ~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPK  792 (957)
                      .|+||.++..+||.=+..  ..|.|++-||
T Consensus       140 ~Ps~~~d~~~ll~~a~~~--~~Pv~~~E~k  167 (167)
T cd07036         140 APSTPYDAKGLLKAAIRD--DDPVIFLEHK  167 (167)
T ss_pred             EECCHHHHHHHHHHHHHC--CCCEEEEECC
T ss_conf             729999999999999839--9978999339


No 23 
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=98.72  E-value=1.1e-05  Score=62.74  Aligned_cols=265  Identities=20%  Similarity=0.277  Sum_probs=177.1

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCC
Q ss_conf             98889886358315785010022333230279997788844556344278984599982431111013432022113865
Q gi|254781051|r  611 SLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLN  690 (957)
Q Consensus       611 ~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~  690 (957)
                      ..|..--+..--.|=+-||||+.              .|-.|---..|.+.-|.--|.|.||||.|..|.--|-++.-- 
T Consensus         9 ~~Am~~eM~rD~~V~v~GEDVg~--------------~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~Gl-   73 (324)
T COG0022           9 NEAMDEEMERDERVVVLGEDVGV--------------YGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGL-   73 (324)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCC--------------CCCCHHHCHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHCCC-
T ss_conf             99999998129988998235230--------------277012033388770854000576521216889999997089-


Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC-----CCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf             311100002442454102256554202576233-----368135436888888876564405788752143782697248
Q gi|254781051|r  691 ALTIWEAQFGDFANGAQVILDQFITAGEQKWLC-----TSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCT  765 (957)
Q Consensus       691 ~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~-----~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~t  765 (957)
                       -.|=|-||.||+--   .+||-++.+-.---|     .+-+|+=-|.|--=+|++|-|-.+|-|..-+  .-+.|+.||
T Consensus        74 -rPivEiqf~dF~~~---a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~--PGlKVV~PS  147 (324)
T COG0022          74 -RPIVEIQFADFIYP---AFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHI--PGLKVVMPS  147 (324)
T ss_pred             -CCEEEEEECCHHHH---HHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCHHHCCCCHHHHHHCC--CCCEEEECC
T ss_conf             -62489863013699---999999999988410489643677997478777774443368889998338--983698179


Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEECCCHHHCC-CCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEEC
Q ss_conf             89999999999743534886898566022108-01268878937998603515776433444544457954576899868
Q gi|254781051|r  766 SPANYFHILRRQIYDRSSRPLIMMAPKSLLRH-KRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCT  844 (957)
Q Consensus       766 tpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~-~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~cs  844 (957)
                      ||+..--||.--+..  .-|.|.+-||.|.|. +.-+.      ++ .|-  |       +-++.++..+.+= --|++-
T Consensus       148 tpyDAKGLL~aAIrd--~dPViflE~k~lY~~~~~eVP------~~-~Y~--i-------PlGkA~i~reG~D-vTivty  208 (324)
T COG0022         148 TPYDAKGLLKAAIRD--PDPVIFLEHKRLYRSFKGEVP------EE-DYT--I-------PLGKAKIVREGSD-VTIVTY  208 (324)
T ss_pred             CHHHHHHHHHHHHCC--CCCEEEEECHHHHCCCCCCCC------CC-CCC--C-------CCCCEEEEECCCC-EEEEEE
T ss_conf             757778899998258--998799732887565655789------87-742--2-------1560336744885-699985


Q ss_pred             CH-HHHHHHHHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHH-HHHHHHC
Q ss_conf             85-789999999976-9986899984014868289999998537998-3998067853178457899769-9998750
Q gi|254781051|r  845 GK-VYYDLLDNRDMR-NIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYL-EKVLHSI  918 (957)
Q Consensus       845 GK-vyydL~~~r~~~-~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl-~~~l~~~  918 (957)
                      |. |..-|.++-+.. .--++-+|-+--|.|+-.+-+.   +.-.+. .++-++|-++-.|-=.-+-..+ ++++..+
T Consensus       209 g~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi---~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~L  283 (324)
T COG0022         209 GAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETII---ASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYL  283 (324)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH---HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             16889999999998626987699724346766799999---9988619689998256567728999999999999751


No 24 
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.60  E-value=0.00014  Score=54.32  Aligned_cols=421  Identities=19%  Similarity=0.257  Sum_probs=222.1

Q ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             73100044553236777764166654455565445404788862575333467258876451067744365799984160
Q gi|254781051|r  333 SHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ  412 (957)
Q Consensus       333 SHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ  412 (957)
                      .||-.==+++.|++.|+.-...            ..+|.+|+  ||.+.. .||++|.+++..-  +. +.-|=|+-+|+
T Consensus       117 G~~g~gls~a~G~A~a~~l~~~------------~~~v~~~~--GDG~l~-eGis~EA~s~Ag~--~~-~~liii~~DN~  178 (576)
T PRK05444        117 GHSSTSISAALGMAKARDLKGE------------DRKVVAVI--GDGALT-GGMAFEALNNAGD--LK-SDLIVILNDNE  178 (576)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC------------CCEEEEEE--CCHHHC-CHHHHHHHHHHHH--CC-CCEEEEEECCC
T ss_conf             8762178899999999984699------------95499998--140103-3148999975553--38-87699997798


Q ss_pred             EECCCCCHHCCCCCCCCHHHHHHCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC--CCCCCCCCCC
Q ss_conf             2012470102467784001122034058-742678899999999999999973897399864211256--5643542235
Q gi|254781051|r  413 IGFTTNPSSARSCTYASDISKSIGIPIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFG--HNEGDEPSFT  489 (957)
Q Consensus       413 IGFTT~p~d~RSs~Y~TDiAK~i~aPI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~G--HNE~DeP~fT  489 (957)
                      |....+- .+   .+..++-+.++-=++ .|+|.|++++..|.+-|-    +..|-++|-...-.=+|  -+|.|     
T Consensus       179 isI~~~v-g~---~~~~~~Fea~Gw~~i~~iDGhd~~~i~~al~~ak----~~~~P~lI~~kT~~G~G~~~~e~~-----  245 (576)
T PRK05444        179 MSISPNV-GA---LSNYTLFEELGFKYIGPIDGHDLDALVETLKNAK----DLKGPVLLHVVTKKGKGYAPAEAD-----  245 (576)
T ss_pred             CCCCCCC-CC---CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCCCCCHHCC-----
T ss_conf             2007886-54---3310178980994868658989999999999888----669998999997056677812205-----


Q ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             57888886718998999999986448989899999999999997756665412587656666568626667789999999
Q gi|254781051|r  490 QPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILKK  569 (957)
Q Consensus       490 QP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~  569 (957)
                       |.-|     |-..            .++.++-+              ...+...+           .+ +.+-.+.|.+
T Consensus       246 -~~~~-----Hg~~------------~f~~~~~~--------------~~~~~~~~-----------~~-~~~f~~~L~~  281 (576)
T PRK05444        246 -PIKY-----HGVG------------KFDPETGK--------------QPKKPGKP-----------SY-TKVFGETLCE  281 (576)
T ss_pred             -HHHC-----CCCC------------CCCHHHCC--------------CCCCCCCC-----------CH-HHHHHHHHHH
T ss_conf             -1222-----5668------------87944343--------------46776650-----------69-9999999999


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCC
Q ss_conf             98874368998620567788899899873343564211478988898863583157850100223332302799977888
Q gi|254781051|r  570 IGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETG  649 (957)
Q Consensus       570 i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~  649 (957)
                      ++++                           +..|-=.+| +|+-+|           |    -..|+.           
T Consensus       282 l~~~---------------------------~~~iv~ita-a~~~~t-----------~----l~~f~~-----------  307 (576)
T PRK05444        282 LAEK---------------------------DPKIVAITA-AMPEGT-----------G----LDEFSK-----------  307 (576)
T ss_pred             HHHH---------------------------CCCCCEEHH-HCCCCC-----------C----CCHHHH-----------
T ss_conf             9874---------------------------302003054-214786-----------6----443677-----------


Q ss_pred             CEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             44556344278984599982431111013432022113865311100002442454102256554202576233368135
Q gi|254781051|r  650 KRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVC  729 (957)
Q Consensus       650 ~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvl  729 (957)
                              -.|  .+|  +|--..|...+++--|.++.   ++.-+=+-|+.|.+   --+||.+...-   .+....++
T Consensus       308 --------~~P--~R~--~~~GIaEqhav~~aaGlA~~---G~~Pf~~~~stFl~---Ra~dQi~~d~a---l~~l~V~~  366 (576)
T PRK05444        308 --------RFP--DRY--FDVGIAEQHAVTFAAGLATE---GLKPVVAIYSTFLQ---RAYDQVIHDVA---LQNLPVTF  366 (576)
T ss_pred             --------HCC--CCE--EECCCHHHHHHHHHHHHHHC---CCCCEEEEECHHHH---HHHHHHHHHHH---HCCCCEEE
T ss_conf             --------587--634--11574577799997458656---99866888212877---76999987654---12797689


Q ss_pred             ECCC-CCCC-CCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHH
Q ss_conf             4368-8888-8876564405788752143782697248899999999997435348868985660221080126887893
Q gi|254781051|r  730 LLPH-GYEG-QGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDM  807 (957)
Q Consensus       730 lLPH-GyeG-qGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~  807 (957)
                      ..-| |.-| -||-|..  +|-.--|-+=.||.|+.|+.+.+.-.+++.-+. .-..|..+-.|+.-+-. ...+..+.|
T Consensus       367 v~d~~GlvGeDGpTHq~--iedla~lR~iPnl~V~~PaD~~E~~~~~~~Al~-~~~gP~~irl~R~~~~~-~~~~~~~~~  442 (576)
T PRK05444        367 AIDRAGLVGADGPTHQG--AFDLSYLRCIPNMVIMAPSDENELRQMLYTALA-YDDGPTAIRYPRGSGVG-VELPELEPL  442 (576)
T ss_pred             EEECCCCCCCCCCCCCC--HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCCEEEEECCCCCCC-CCCCCCCCC
T ss_conf             96078667899851003--799998526998189962999999999999985-78998899942788888-787765434


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             79986035157764334445444579545768998688578999999997699--8689998401486828999999853
Q gi|254781051|r  808 TCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSR  885 (957)
Q Consensus       808 ~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~  885 (957)
                      ..|. . .++.+              .+  +-+|+++|-....-+++.++...  -++.+|-+-.+-||+.+.+.+++++
T Consensus       443 ~~Gk-~-~vl~~--------------G~--dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~~~ikPlD~e~l~~~~~~  504 (576)
T PRK05444        443 PIGK-G-EVLRE--------------GS--DVAILAFGTMLAEALEAAERLAAEGISATVVDARFVKPLDEELLLELAAK  504 (576)
T ss_pred             CCCE-E-EEEEC--------------CC--CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             4650-8-99962--------------89--78999538799999999999985699879995587788799999999954


Q ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEEECC
Q ss_conf             79983998067853178457899769999875056-77601897536
Q gi|254781051|r  886 FVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGA-DYSRVRYVGRL  931 (957)
Q Consensus       886 y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~-~~~~~~y~gR~  931 (957)
                      |.   .+++=||+--.|+|.-   .+.+.+...+. ...++..+|=+
T Consensus       505 ~~---~ivtvEeh~~~GGlGs---~v~e~l~~~g~~~~~~~~~iGi~  545 (576)
T PRK05444        505 HE---LLVTVEENAIMGGFGS---AVLEFLAEHGLLKPVKVLNLGLP  545 (576)
T ss_pred             CC---EEEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCEEEEEEC
T ss_conf             89---7999938975765899---99999997599779746999848


No 25 
>KOG1182 consensus
Probab=97.71  E-value=0.0039  Score=43.43  Aligned_cols=335  Identities=18%  Similarity=0.206  Sum_probs=214.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-------ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             88879889999999999999899999864033622-------22564658999999999998737910799806765526
Q gi|254781051|r  203 SSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKR-------FGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRL  275 (957)
Q Consensus       203 ~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KR-------FsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRL  275 (957)
                      .++++.+.-..+++.++.-...++-|--. .-|-|       ||-||.         -|-.|+...-+++|.|-=---  
T Consensus        80 dp~~~ee~~~kmy~~M~~Ln~MD~IlYes-QRQGRiSFYmT~~GEEa~---------higSAAAL~p~Dli~gQYREa--  147 (432)
T KOG1182          80 DPQLSEEVVLKMYKDMTLLNIMDRILYES-QRQGRISFYMTNFGEEAI---------HIGSAAALEPQDLIYGQYREA--  147 (432)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCEEEEEEECCCHHHH---------HHHHHHHCCCCCCCCCCCCCC--
T ss_conf             78846999999999889999999998887-636437898703441231---------012354178302223113557--


Q ss_pred             HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCC
Q ss_conf             89998853798999998558874322345551001502688983596189997178773100044553236777764166
Q gi|254781051|r  276 NVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAG  355 (957)
Q Consensus       276 NVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d  355 (957)
                      -||. --|.+++...+.--|+.++-..| --..-|.|..- +    +-+.||     |-|-.--|-+.|.+-|--.+.++
T Consensus       148 GVLl-wRgftle~f~~qCyGn~~d~gkG-rQMPvHyGs~e-l----nf~tis-----splatqlpqAvGaaYa~k~~~~n  215 (432)
T KOG1182         148 GVLL-WRGFTLEEFMNQCYGNKSDLGKG-RQMPVHYGSKE-L----NFVTIS-----SPLATQLPQAVGAAYALKMRKKN  215 (432)
T ss_pred             CEEE-ECCCCHHHHHHHHCCCCCCCCCC-CCCCCCCCCCC-C----CEEEEC-----CHHHHCCCHHHHHHHHHHHCCCC
T ss_conf             3688-84852999998742785301466-53652137552-3----269961-----55430262655456665404467


Q ss_pred             CCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHH-CCCCCCCCHHHHH
Q ss_conf             654455565445404788862575333467258876451067744365799984160201247010-2467784001122
Q gi|254781051|r  356 IVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSS-ARSCTYASDISKS  434 (957)
Q Consensus       356 ~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d-~RSs~Y~TDiAK~  434 (957)
                                   ....|.--||.|-+ .|=..-.||++-+-+-   -.|-+.-||--.-.|...+ -||--- ---+..
T Consensus       216 -------------nac~V~yfGdG~aS-EGD~HA~~NfAAtle~---Pvif~CRNNG~AISTptseQyr~DGI-a~kG~a  277 (432)
T KOG1182         216 -------------NACAVTYFGDGAAS-EGDAHAAFNFAATLEC---PVIFFCRNNGWAISTPTSEQYRGDGI-AVKGPA  277 (432)
T ss_pred             -------------CEEEEEEECCCCCC-CCCHHHHHHHHHHHCC---CEEEEECCCCEEECCCCHHHHCCCCE-EEECCC
T ss_conf             -------------80799994578666-6532333207877279---88999827975640564787067855-873465


Q ss_pred             HCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCH---HHHHHHHHCCCHHHHHHHHH
Q ss_conf             034058742678899999999999999973897399864211256564354223557---88888671899899999998
Q gi|254781051|r  435 IGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP---MMYKTIRSHKSVLQLYADSL  511 (957)
Q Consensus       435 i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP---~mY~~I~~hp~v~~~Y~~~L  511 (957)
                      +++--+.|.|.|.-||.-|++-|-++--+=.+-|+|....||---|.-.||-.---+   +-|=.-..||  ...+.+-+
T Consensus       278 YGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~p--isrfr~~i  355 (432)
T KOG1182         278 YGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHP--ISRFRKYI  355 (432)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC--HHHHHHHH
T ss_conf             6357998668316799998899999987516860356456652466677753013551255454305680--79999988


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             64489898999999999999977566654125-876566665686266677899999999887436899862
Q gi|254781051|r  512 MKNQVISKQELQSLANNWHKYLEAEYKESESY-CPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFN  582 (957)
Q Consensus       512 i~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~-~~~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~  582 (957)
                      ...|..+++.-.++.++.++++-+++..+..+ +|++...+.+-....+.-+..+ -..|.+.+.+.|+++-
T Consensus       356 ~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq-~~~l~~~i~~~~e~Yp  426 (432)
T KOG1182         356 ESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQ-ELELKEHIEKHPEHYP  426 (432)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCC
T ss_conf             7467757146899999999999999998761358998998888865324768999-9999999986733385


No 26 
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.58  E-value=0.011  Score=39.95  Aligned_cols=226  Identities=15%  Similarity=0.201  Sum_probs=140.2

Q ss_pred             EECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH-HHHHHCCCCCCEEECCCC-C-CCCCCCCCC
Q ss_conf             8243111101343202211386531110000244245410225655420-257623336813543688-8-888876564
Q gi|254781051|r  668 VNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITA-GEQKWLCTSNLVCLLPHG-Y-EGQGPEHSS  744 (957)
Q Consensus       668 ~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss-~e~KW~~~sglvllLPHG-y-eGqGPEHSS  744 (957)
                      ++--..|.+..++--|.+.   ..+.-.=+-|.+|.   |-..||-+-+ +-    +...+++..-|. . -..||-|-.
T Consensus       364 ~~~GIrE~~m~a~a~GlA~---~G~~P~~~tf~~F~---~ra~~qi~~~~al----~~lpv~~v~~~~GlvGeDGpTHq~  433 (642)
T PRK12571        364 FDVGIAEQHAVTFAAGLAA---AGLKPFCAIYSTFL---QRGYDQVLHDVAL----QKLPVRFVIDRAGLVGADGATHAG  433 (642)
T ss_pred             CCCCHHHHHHHHHHHHHHH---CCCCEEEEEECCHH---HHHHHHHHHHHHH----CCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             5524556789999634764---69962899967445---5437887632551----598669999667324799876424


Q ss_pred             CCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCC
Q ss_conf             40578875214378269724889999999999743534886898566022108012688789379986035157764334
Q gi|254781051|r  745 ARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYH  824 (957)
Q Consensus       745 aRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~  824 (957)
                        +|-.--|.+=.||.|+-|+.+.+.-.+++--+.+ -..|-++..|+.-+........-..+.-| . -.++.+.    
T Consensus       434 --iedla~lR~iPnl~V~~PaD~~E~~~a~~~al~~-~~gP~~i~l~R~~~~~~~~~~~~~~~~~g-~-~~~~~~g----  504 (642)
T PRK12571        434 --MFDMAFLTCLPNLRVMAPADEAELRHMLRTAVAH-DDGPIAVRYPRGEGVGVEIPAVGRVLGIG-K-GRVPREG----  504 (642)
T ss_pred             --HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCC-E-EEEECCC----
T ss_conf             --3778875479981899129999999999999866-89988999527878887766421113564-3-8994279----


Q ss_pred             CCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             445444579545768998688578999999997699--868999840148682899999985379983998067853178
Q gi|254781051|r  825 GKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMG  902 (957)
Q Consensus       825 ~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~G  902 (957)
                                 .-.=+|+++|-....-+++.++...  -++.+|-+.-+-||..+.+.....++   ..+-+=|+..- |
T Consensus       505 -----------~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~Vv~~~~~kp~D~~~~~~~~~~~---~~vv~~E~~~~-g  569 (642)
T PRK12571        505 -----------RPDVAILSVGAHLHECLEAAELLEAEGISVTVADARFVKPLDEALIAQLARRH---RVLVTVEDGAM-G  569 (642)
T ss_pred             -----------CCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC---CEEEEEECCCC-C
T ss_conf             -----------99989998609999999999999866998699816737877999999997009---88999907851-2


Q ss_pred             CH-HHHHHHHHHHHHHCCC--CCCEEEEEECC
Q ss_conf             45-7899769999875056--77601897536
Q gi|254781051|r  903 AW-TFIEPYLEKVLHSIGA--DYSRVRYVGRL  931 (957)
Q Consensus       903 aW-~~v~~rl~~~l~~~~~--~~~~~~y~gR~  931 (957)
                      .| .++...+..    .+.  ...+++.+|=|
T Consensus       570 G~g~~v~~~~~~----~g~~~~~~~~~~~Gi~  597 (642)
T PRK12571        570 GFGAHVLHHLAD----AGLLDGGLKLRTLGLP  597 (642)
T ss_pred             CHHHHHHHHHHH----CCCCCCCCEEEEEECC
T ss_conf             389999999997----4987789738998358


No 27 
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=97.54  E-value=0.0011  Score=47.57  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCC
Q ss_conf             04455323677776416665445556544540478886257533346725887645106774436579998416020124
Q gi|254781051|r  338 VDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT  417 (957)
Q Consensus       338 VnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT  417 (957)
                      -=|++.|.|-|.....            ...+|.+|+  ||++.. .|+++|.|+++...  ..+=-|=||=||++.-..
T Consensus       110 gls~a~G~A~a~k~~~------------~~~~v~~~i--GDGel~-EG~~wEAl~~A~~~--~L~nLi~ivD~N~~~~~g  172 (255)
T cd02012         110 GLSVAVGMALAEKLLG------------FDYRVYVLL--GDGELQ-EGSVWEAASFAGHY--KLDNLIAIVDSNRIQIDG  172 (255)
T ss_pred             HHHHHHHHHHHHHHCC------------CCCCEEEEE--CCCCCC-CCHHHHHHHHHHHC--CCCCEEEEECCCCCEECC
T ss_conf             8999999999998628------------887179994--251103-31289999998555--877569998689826256


Q ss_pred             CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             701024677840011220340587426788999999999999999738973998642112565
Q gi|254781051|r  418 NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH  480 (957)
Q Consensus       418 ~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GH  480 (957)
                      ...+..+..--.+..+.++-.++.|||.|.+++..+.+-|   +..-+|-++|-..+-.=+|-
T Consensus       173 ~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~~a---~~~~~kP~~I~~~T~KGkG~  232 (255)
T cd02012         173 PTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEA---KKSKGKPTLIIAKTIKGKGV  232 (255)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCCEEEEEEEEECCCC
T ss_conf             0302547688999999669811101799999999999999---86799958999996511488


No 28 
>KOG0525 consensus
Probab=97.26  E-value=0.0019  Score=45.82  Aligned_cols=246  Identities=22%  Similarity=0.287  Sum_probs=160.1

Q ss_pred             EEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCC
Q ss_conf             15785010022333230279997788844556344278984599982431111013432022113865311100002442
Q gi|254781051|r  623 KVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDF  702 (957)
Q Consensus       623 ~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF  702 (957)
                      .--+-|+||.=|-      |+.+..         .|.+.-|+=.|.|.||.|.|..||-.|...  -.+-.|-|-||+|+
T Consensus        60 ~a~vfgedv~fgg------vfrct~---------gl~~kfgk~rvfntplceqgivgfgig~aa--~g~~aiaeiqfady  122 (362)
T KOG0525          60 RAVVFGEDVAFGG------VFRCTT---------GLAEKFGKDRVFNTPLCEQGIVGFGIGLAA--MGATAIAEIQFADY  122 (362)
T ss_pred             CEEEECCCCCCCE------EEEEEC---------CHHHHHCCCCCCCCCHHHCCCCEECHHHHH--CCCCEEEEEEECCC
T ss_conf             3278324542240------798510---------067773756302672022154200131254--06615888850221


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCC-------CCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHH
Q ss_conf             45410225655420257623336-------81354368888888765644057887521437826972488999999999
Q gi|254781051|r  703 ANGAQVILDQFITAGEQKWLCTS-------NLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILR  775 (957)
Q Consensus       703 ~NgAQviiDqfiss~e~KW~~~s-------glvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LR  775 (957)
                      .--|   +||.+.- -+|+.-.|       ||++--|-|--|-|.---|--.|-|.  |--..+.|+.|-+|-|-=-||-
T Consensus       123 ifpa---fdqivne-aakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff--~h~pgikvviprsp~qakglll  196 (362)
T KOG0525         123 IFPA---FDQIVNE-AAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFF--CHVPGIKVVIPRSPRQAKGLLL  196 (362)
T ss_pred             CCHH---HHHHHHH-HHHHEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHE--ECCCCCEEEECCCCCHHHCEEE
T ss_conf             2255---8999878-77625235784456765774554424555301568823530--0489836982489504303142


Q ss_pred             HHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHH
Q ss_conf             97435348868985660221080126887893799860351577643344454445795457689986885789999999
Q gi|254781051|r  776 RQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNR  855 (957)
Q Consensus       776 RQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r  855 (957)
                      --+  .-..|.|-|-||-|.|...---|.+|..---.=-+||-+              -+.+ .+|----++..-+..+-
T Consensus       197 sci--rdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevire--------------g~di-tlv~wgtqvh~i~e~a~  259 (362)
T KOG0525         197 SCI--RDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIRE--------------GSDI-TLVAWGTQVHVIMEQAC  259 (362)
T ss_pred             EEC--CCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHC--------------CCCE-EEEECCHHHHHHHHHHH
T ss_conf             010--699965784528999876630787773343217777523--------------7843-89971104689999987


Q ss_pred             -HH-CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             -97-69986899984014868289999998537998399806785317845789976
Q gi|254781051|r  856 -DM-RNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPY  910 (957)
Q Consensus       856 -~~-~~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~r  910 (957)
                       .+ +---+.-+|-+.-|-||-.+-+.+-..|-.  .++-..|-|-.-|--.-+..-
T Consensus       260 l~~ek~giscevidlkti~pwd~d~v~~sv~ktg--rllisheapvtggfgaeiast  314 (362)
T KOG0525         260 LAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTG--RLLISHEAPVTGGFGAEIAST  314 (362)
T ss_pred             HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHC--EEEEECCCCCCCCCHHHHHHH
T ss_conf             6677529846997300015753888999887416--178863477567521888999


No 29 
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=97.22  E-value=0.0045  Score=42.91  Aligned_cols=145  Identities=19%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             HHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEE
Q ss_conf             98863583157850100223332302799977888445563442789845999824311110134320221138653111
Q gi|254781051|r  615 GSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTI  694 (957)
Q Consensus       615 ~SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~i  694 (957)
                      --++.+.-.|-+-++|+...+....               +..-.++    .++|.+++|.+..|.--|-|+.--.   -
T Consensus         8 ~~~~~~d~~vv~l~~Dl~~~~~~~~---------------f~~~~p~----r~in~GIaE~~~vg~a~GlA~~G~~---p   65 (156)
T cd07033           8 LELAKKDPRIVALSADLGGSTGLDK---------------FAKKFPD----RFIDVGIAEQNMVGIAAGLALHGLK---P   65 (156)
T ss_pred             HHHHHHCCCEEEEECCCCCCCCHHH---------------HHHHCCC----CEECCCCHHHHHHHHHHHHHHCCCC---C
T ss_conf             9999779799999687678877589---------------9987897----8444770199999999999975999---8


Q ss_pred             ECCCCCCCCCCCHHHHHHHH-HHHHHHHCCCCCCEEECCCC---CCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHH
Q ss_conf             00002442454102256554-20257623336813543688---888887656440578875214378269724889999
Q gi|254781051|r  695 WEAQFGDFANGAQVILDQFI-TAGEQKWLCTSNLVCLLPHG---YEGQGPEHSSARLERFLQMCAENNMYVANCTSPANY  770 (957)
Q Consensus       695 WEAQFGDF~NgAQviiDqfi-ss~e~KW~~~sglvllLPHG---yeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~  770 (957)
                      |-..|..|   .+-.+||.. ..+-.    ...+++...|+   |-+.||.|.+  +|-.--+.+-.||.|..|++|...
T Consensus        66 i~~~~~~F---~~r~~eqi~~~~a~~----~~~v~~v~~~~g~~~~~~G~tH~~--~ed~~~~~~~Pgl~i~~P~~~~e~  136 (156)
T cd07033          66 FVSTFSFF---LQRAYDQIRHDVALQ----NLPVKFVGTHAGISVGEDGPTHQG--IEDIALLRAIPNMTVLRPADANET  136 (156)
T ss_pred             CHHHHHHH---HHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHCCCCCEEEEECCHHHH
T ss_conf             11357988---751099999997752----799659976885477789788055--005878723899489961999999


Q ss_pred             HHHHHHHHCCCCCCCEEEECCC
Q ss_conf             9999997435348868985660
Q gi|254781051|r  771 FHILRRQIYDRSSRPLIMMAPK  792 (957)
Q Consensus       771 FH~LRRQ~~r~~rkPLiv~tPK  792 (957)
                      -.+|+.=...  .+|-++..||
T Consensus       137 ~~ll~~a~~~--~~P~~irl~r  156 (156)
T cd07033         137 AAALEAALEY--DGPVYIRLPR  156 (156)
T ss_pred             HHHHHHHHHC--CCCEEEEEEC
T ss_conf             9999999828--9988999769


No 30 
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=97.09  E-value=0.0075  Score=41.27  Aligned_cols=113  Identities=20%  Similarity=0.403  Sum_probs=79.1

Q ss_pred             CCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf             77310004455323677776416665445556544540478886257533346725887645106774436579998416
Q gi|254781051|r  332 PSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINN  411 (957)
Q Consensus       332 PSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNN  411 (957)
                      .-||=-==|++.|+|-|..-..            ...+|.+++  ||.... +|+++|.++++..  +. .--|=||.+|
T Consensus        74 tGsLG~Gls~a~G~Ala~k~~~------------~~~~v~~l~--GDGEl~-EG~~wEA~~~A~~--~~-~nli~iid~N  135 (195)
T cd02007          74 TGHSSTSISAALGMAVARDLKG------------KKRKVIAVI--GDGALT-GGMAFEALNNAGY--LK-SNMIVILNDN  135 (195)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCC------------CCCEEEEEE--CCCHHH-HHHHHHHHHHHHH--CC-CCEEEEEECC
T ss_conf             8646889999999999995679------------998499997--781140-1899999999765--18-9869999679


Q ss_pred             CEECCCCCHHCCCCCCCCHHHHHHCCCEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             020124701024677840011220340587-4267889999999999999997389739986
Q gi|254781051|r  412 QIGFTTNPSSARSCTYASDISKSIGIPIFH-VNGDDPEAVIRVVRMAVSFRMKFHKSVVIDI  472 (957)
Q Consensus       412 QIGFTT~p~d~RSs~Y~TDiAK~i~aPI~H-VN~DdpEav~~~~~lA~~yR~~F~kDVvIDl  472 (957)
                      ++...++..+      ..+.-|.++.-++. |||.|.+++..|.+-|-    +-+|-++|-.
T Consensus       136 ~~~i~~~~~~------~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~----~~~~P~~Iia  187 (195)
T cd02007         136 EMSISPNVGT------PGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHV  187 (195)
T ss_pred             CEEECCCCCC------CCCHHHHCCCCEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEE
T ss_conf             8761488666------42368774886778607899999999999986----2899989999


No 31 
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=96.86  E-value=0.017  Score=38.51  Aligned_cols=166  Identities=17%  Similarity=0.244  Sum_probs=110.2

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             989999985588743223455510015026889-8359618999717877310004455323677776416665445556
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      .|..++.|.....|.+.....|+=-|.-+.... ... ++-+.-....=.++=.=-|-++|-.=|.-|            
T Consensus         9 ~P~rv~~~l~~~lp~d~ivv~D~G~~~~~~~~~~~~~-~p~~~~~s~~~g~mG~glPaAiGaklA~Pd------------   75 (202)
T cd02006           9 KPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVY-KPRHWINCGQAGPLGWTVPAALGVAAADPD------------   75 (202)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCC-CCCEEECCCCCCHHHHHHHHHHHHHHHCCC------------
T ss_conf             9999999999757998199987868999999856868-999186589987033189999999987699------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC---------EECCCC------CHHCCCC---
Q ss_conf             5445404788862575333467258876451067744365799984160---------201247------0102467---
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ---------IGFTTN------PSSARSC---  425 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ---------IGFTT~------p~d~RSs---  425 (957)
                          +.|++  |-||.+|.=-+--.+|.--.+||      .|.||.||+         -.|..+      ..+..++   
T Consensus        76 ----r~Vv~--i~GDGsf~m~~~EL~Ta~r~~lp------ii~vV~NN~~~g~ir~~q~~~~~~~~~~~~~~~~~~~~~~  143 (202)
T cd02006          76 ----RQVVA--LSGDYDFQFMIEELAVGAQHRIP------YIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELG  143 (202)
T ss_pred             ----CEEEE--EECCCCHHHHHHHHHHHHHHCCC------EEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             ----85999--97684055129999999996998------3999997955689999999853474423254666885446


Q ss_pred             CCCC---HHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             7840---011220340587426788999999999999999738973998642112
Q gi|254781051|r  426 TYAS---DISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRR  477 (957)
Q Consensus       426 ~Y~T---DiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr  477 (957)
                      .|..   -+|+.+++.=+.|  ++||....|.+=|++.-.+-+..++||.+|=|.
T Consensus       144 ~~~~D~~kiAea~G~~g~rV--~~~~eL~~Al~~A~~~~~~~~~P~lIeviidr~  196 (202)
T cd02006         144 GYGVDHVKVAEGLGCKAIRV--TKPEELAAAFEQAKKLMAEHRVPVVVEAILERV  196 (202)
T ss_pred             CCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             78989999999789989997--999999999999998751479978999997671


No 32 
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=96.74  E-value=0.043  Score=35.51  Aligned_cols=90  Identities=18%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             CCEEEEECCHHHHHHHHHHHHCC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             76899868857899999999769--9868999840148682899999985379983998067853178457899769999
Q gi|254781051|r  837 IRRVILCTGKVYYDLLDNRDMRN--IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV  914 (957)
Q Consensus       837 v~rvi~csGKvyydL~~~r~~~~--~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~  914 (957)
                      .+-+|+|.|=.|-...++-+...  -.+|.++||-.|+|||.++|++.++++..   |-|=|  .|+| |..  ..+...
T Consensus       274 Adi~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~~~i~~~l~~~k~---ViVvE--~N~G-Ql~--~~i~~~  345 (377)
T PRK08659        274 AEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKA---IVVPE--MNLG-QMS--LEVERV  345 (377)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCE---EEEEC--CCCH-HHH--HHHHHH
T ss_conf             989999968557899999999996498688999722069998999999856998---99980--7756-899--999997


Q ss_pred             HHHCCCCCCEEEEEECCCCC
Q ss_conf             87505677601897536646
Q gi|254781051|r  915 LHSIGADYSRVRYVGRLPSA  934 (957)
Q Consensus       915 l~~~~~~~~~~~y~gR~~~a  934 (957)
                      +........-++|-|||-++
T Consensus       346 ~~~~~~~~~i~k~~G~p~~~  365 (377)
T PRK08659        346 VKGRAKVKGINKIGGELITP  365 (377)
T ss_pred             HCCCCCEEEEEEECCCCCCH
T ss_conf             28998646883258981799


No 33 
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=96.73  E-value=0.01  Score=40.25  Aligned_cols=146  Identities=20%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             43223455510015026889835961899971787731000445532367777641666544555654454047888625
Q gi|254781051|r  298 PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHG  377 (957)
Q Consensus       298 ~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHG  377 (957)
                      |++.....|+=-+..+....-...+.-+.-....-++|-.--|.++|.+-|..+                ++|  |.+.|
T Consensus        11 ~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~~a~p~----------------~~v--v~i~G   72 (168)
T cd00568          11 PEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPD----------------RPV--VCIAG   72 (168)
T ss_pred             CCCCEEEECCHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC----------------CEE--EEEEC
T ss_conf             999699987527699999975628999598289875377799999999987899----------------839--99977


Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCH-----------HCCCCCCCCHHHHHHCCCEEEECCCC
Q ss_conf             7533346725887645106774436579998416020124701-----------02467784001122034058742678
Q gi|254781051|r  378 DAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS-----------SARSCTYASDISKSIGIPIFHVNGDD  446 (957)
Q Consensus       378 DAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~-----------d~RSs~Y~TDiAK~i~aPI~HVN~Dd  446 (957)
                      |.+|.=.+--.+|..-.++|      .+.||.||+..-.+...           ...+..--..+|+.++++.++|+  +
T Consensus        73 DG~f~~~~~el~ta~~~~l~------i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~  144 (168)
T cd00568          73 DGGFMMTGQELATAVRYGLP------VIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE--D  144 (168)
T ss_pred             CCCCEECCHHHHHHHHCCCC------EEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--C
T ss_conf             97421131766456531884------269999776136779999850289876565888877899997498699989--9


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             899999999999999973897399864
Q gi|254781051|r  447 PEAVIRVVRMAVSFRMKFHKSVVIDIV  473 (957)
Q Consensus       447 pEav~~~~~lA~~yR~~F~kDVvIDlv  473 (957)
                      |+....+.+-|+    +.++-++||+.
T Consensus       145 ~~el~~al~~a~----~~~~p~li~V~  167 (168)
T cd00568         145 PEDLEAALAEAL----AAGGPALIEVK  167 (168)
T ss_pred             HHHHHHHHHHHH----HCCCCEEEEEE
T ss_conf             999999999998----38997899998


No 34 
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=96.59  E-value=0.024  Score=37.39  Aligned_cols=157  Identities=18%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             989999985588743223455510015026889-8359618999717877310004455323677776416665445556
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      .|..++.+.....|++.....|+=.|..+.... ......-.++  +.-..+=.--|-++|..-|..+            
T Consensus         2 ~P~~~~~~l~~~lp~~~ivv~D~G~~~~~~~~~~~~~~p~~~~~--~~~g~mG~~~paAiGa~lA~p~------------   67 (178)
T cd02002           2 TPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFT--LRGGGLGWGLPAAVGAALANPD------------   67 (178)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEE--CCCCHHHHHHHHHHHHHHHCCC------------
T ss_conf             88999999996589885999887054999999727489993980--7985376799999999985989------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-E-------------CCCCCHHC-CCCCCC
Q ss_conf             54454047888625753334672588764510677443657999841602-0-------------12470102-467784
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-G-------------FTTNPSSA-RSCTYA  428 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-G-------------FTT~p~d~-RSs~Y~  428 (957)
                          ++|++|.  ||.+|.=  -++|-   .-..-|+.- .+-||+||+- |             +++...+. ....-.
T Consensus        68 ----r~vv~i~--GDG~f~m--~~~eL---~Ta~~~~lp-v~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~  135 (178)
T cd02002          68 ----RKVVAII--GDGSFMY--TIQAL---WTAARYGLP-VTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPG  135 (178)
T ss_pred             ----CEEEEEE--CCCCCCC--CCHHH---EEEHHHCCC-EEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             ----8299997--8973115--52221---000141799-7999997983089999999973777776655555677899


Q ss_pred             ---CHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             ---001122034058742678899999999999999973897399864
Q gi|254781051|r  429 ---SDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIV  473 (957)
Q Consensus       429 ---TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv  473 (957)
                         ..+|++++++-++|  ++|+....+.+-|++    -.+-++||++
T Consensus       136 ~d~~~iA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~vIev~  177 (178)
T cd02002         136 IDFAAIAKAFGVEAERV--ETPEELDEALREALA----EGGPALIEVV  177 (178)
T ss_pred             CCHHHHHHHCCCCEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEE
T ss_conf             89999999839948997--899999999999983----8996899998


No 35 
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=96.46  E-value=0.032  Score=36.50  Aligned_cols=173  Identities=21%  Similarity=0.309  Sum_probs=110.0

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EEC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             989999985588743223455510015026889-835-961899971787731000445532367777641666544555
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QIC-GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSI  362 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~-g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~  362 (957)
                      .|..+|.+.....|++.....|+=.|..+.... .+. .+...  ...+=+.+=.==|.++|..-|..|           
T Consensus         5 ~P~~~~~~l~~~lp~d~ivv~D~G~~~~~~~~~~~~~~p~~~~--~~~~~g~mG~glpaAiGAk~A~Pd-----------   71 (196)
T cd02013           5 HPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFI--APLSFGNCGYALPAIIGAKAAAPD-----------   71 (196)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCEEE--ECCCCCHHHHHHHHHHHHHHHCCC-----------
T ss_conf             9999999999558988099986438799999966758999598--069866476799999999972789-----------


Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-EC---------CCC--CHHCCCCCCCCH
Q ss_conf             654454047888625753334672588764510677443657999841602-01---------247--010246778400
Q gi|254781051|r  363 SLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GF---------TTN--PSSARSCTYASD  430 (957)
Q Consensus       363 ~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GF---------TT~--p~d~RSs~Y~TD  430 (957)
                           +.|++|  -||.+|-=..--.+|.-=.+||      .+.||+||.. |.         ...  ..+-....| ..
T Consensus        72 -----r~Vv~i--~GDGsf~m~~~EL~Ta~r~~lp------v~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~df-~~  137 (196)
T cd02013          72 -----RPVVAI--AGDGAWGMSMMEIMTAVRHKLP------VTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESF-AK  137 (196)
T ss_pred             -----CEEEEE--ECCCCHHHCHHHHHHHHHHCCC------EEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCH-HH
T ss_conf             -----749999--5797342144899999997889------069999780578999999987089742453699986-89


Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             112203405874267889999999999999997389739986421125656435422355788
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMM  493 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~m  493 (957)
                      +|+.++++-+.|  ++||....|.+-|++.+.+ ++-++||++|=+     |..-| |-|-.|
T Consensus       138 ~A~a~G~~g~~V--~~~~el~~al~~Ala~~~~-~~P~lIeV~vD~-----e~~~P-~~~~~~  191 (196)
T cd02013         138 IAEACGAKGITV--DKPEDVGPALQKAIAMMAE-GKTTVIEIVCDQ-----ELGDP-FRRDAL  191 (196)
T ss_pred             HHHHCCCEEEEE--CCHHHHHHHHHHHHHHCCC-CCEEEEEEEECC-----CCCCC-CCHHHH
T ss_conf             999759878997--8999999999999985679-986999999786-----65798-750230


No 36 
>PRK11269 glyoxylate carboligase; Provisional
Probab=96.46  E-value=0.017  Score=38.62  Aligned_cols=165  Identities=19%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE-EEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             8999998558874322345551001502688-983596189997178773100044553236777764166654455565
Q gi|254781051|r  286 PRSIFYEFKGKGPSEKEYSGDVKYHLGLCCN-RQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISL  364 (957)
Q Consensus       286 ~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~-~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~  364 (957)
                      +..++.+.....+.+....-|+-.|..+... .... +.-+.-....=+.+=.=-|-++|-.-|+-|             
T Consensus       372 p~~v~~~l~~~~~~d~iiv~d~G~~~~~~~~~~~~~-~p~~~~~~g~~G~mG~glPaAIGA~lA~Pd-------------  437 (591)
T PRK11269        372 PQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVY-KPRHWINCGQAGPLGWTIPAALGVRAADPE-------------  437 (591)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCC-CCCCEECCCCCCHHHHHHHHHHHHHHHCCC-------------
T ss_conf             999999999767998889980607799999853357-998773676655589999999999997899-------------


Q ss_pred             CCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC---------EECCC---------CCHHCCCCC
Q ss_conf             445404788862575333467258876451067744365799984160---------20124---------701024677
Q gi|254781051|r  365 VERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ---------IGFTT---------NPSSARSCT  426 (957)
Q Consensus       365 ~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ---------IGFTT---------~p~d~RSs~  426 (957)
                         ++|++|.  ||.+|.=-+---+|.---+||      .++||+||+         .+|-.         ++..-....
T Consensus       438 ---r~VV~i~--GDG~f~m~~qEL~Tavr~~lp------vv~vV~NN~~~G~Ir~~Q~~~~~~~~~~~~~~~~~~~~~~~  506 (591)
T PRK11269        438 ---RPVVALS--GDYDFQFLIEELAVGAQFNLP------YIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNG  506 (591)
T ss_pred             ---CCEEEEE--CCHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             ---9689998--736875419999999995889------08999968823099999997445644220557778865567


Q ss_pred             CCCH---HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             8400---11220340587426788999999999999999738973998642112
Q gi|254781051|r  427 YASD---ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRR  477 (957)
Q Consensus       427 Y~TD---iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr  477 (957)
                      |-.|   +|+.+++.=++|  ++||.+--|.+=|++...++++-|+||.+-=|.
T Consensus       507 ~~~Df~~~Aea~G~~g~rV--~~~~el~~Al~~Ala~~~~~~~P~lv~v~id~~  558 (591)
T PRK11269        507 YGVDHVKVAEGLGCKAIRV--FKPEDIAPAFEQAKALMAEFRVPVVVEVILERV  558 (591)
T ss_pred             CCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf             8888999999779879998--999999999999974113579988999994264


No 37 
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=96.43  E-value=0.035  Score=36.17  Aligned_cols=159  Identities=16%  Similarity=0.199  Sum_probs=92.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             89999985588743223455510015026889835961899971787731000445532367777641666544555654
Q gi|254781051|r  286 PRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLV  365 (957)
Q Consensus       286 ~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~  365 (957)
                      ++.++.+.....|++.....|+=-|.-......+.... +.-....=+.+=.--|-++|..-|+.|+             
T Consensus         4 p~rv~~~l~~~lp~daivv~D~G~~~~~~~~~~~~~~~-~~~~~~~~g~mG~~lpaAiGa~lA~p~~-------------   69 (183)
T cd02005           4 QARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGT-RFISQPLWGSIGYSVPAALGAALAAPDR-------------   69 (183)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCC-EEECCCCCCHHHHHHHHHHHHHHHCCCC-------------
T ss_conf             89999999946899999998977889999763638999-8983777503778999999999978998-------------


Q ss_pred             CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCC-HHCCCCCC-------CCHHHHHHCC
Q ss_conf             454047888625753334672588764510677443657999841602012470-10246778-------4001122034
Q gi|254781051|r  366 ERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP-SSARSCTY-------ASDISKSIGI  437 (957)
Q Consensus       366 ~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p-~d~RSs~Y-------~TDiAK~i~a  437 (957)
                         +|++  +-||.+|-=-+---+|.--.+|+      .|.||+||+ ||+... .......|       -..+|+.+++
T Consensus        70 ---~Vv~--i~GDG~f~m~~~El~Ta~r~~l~------vi~vV~NN~-~~~~~r~~~~~~~~~~~~~~~df~~~A~a~G~  137 (183)
T cd02005          70 ---RVIL--LVGDGSFQMTVQELSTMIRYGLN------PIIFLINND-GYTIERAIHGPEASYNDIANWNYTKLPEVFGG  137 (183)
T ss_pred             ---CEEE--EECCHHHHHHHHHHHHHHHHCCC------EEEEEEECC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             ---4799--95673676208899999982998------199999899-43255751268656576999999999999478


Q ss_pred             ----CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             ----05874267889999999999999997389739986421
Q gi|254781051|r  438 ----PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       438 ----PI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                          +-+.|  ++|+..-.|.+-|+.   +..+-++||+++=
T Consensus       138 ~~g~~g~rV--~~~~el~~al~~Al~---~~~~P~liev~vd  174 (183)
T cd02005         138 GGGGLSFRV--KTEGELDEALKDALF---NRDKLSLIEVILP  174 (183)
T ss_pred             CCCCEEEEE--CCHHHHHHHHHHHHH---CCCCEEEEEEECC
T ss_conf             668428997--899999999999997---2898299999748


No 38 
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=96.21  E-value=0.09  Score=33.11  Aligned_cols=158  Identities=17%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEC-CCEE
Q ss_conf             999999999998737910799806765526899988537989999985588743223455510015026889835-9618
Q gi|254781051|r  246 IIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQIC-GKDV  324 (957)
Q Consensus       246 lIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~-g~~v  324 (957)
                      |+-+-++|.+.+-+.|| .++=|-+            |-|...|..++.-...+           .|.-  .+.. +.++
T Consensus         4 ll~GneAiarga~eaGv-~~vsgYp------------GsP~~ei~~~l~~~~~~-----------~~i~--~e~~~NEkv   57 (595)
T TIGR03336         4 LLLGNEAIARGALEAGV-GVAAAYP------------GTPSSEITDTLAKVAKR-----------AGVY--FEWSVNEKV   57 (595)
T ss_pred             HHHHHHHHHHHHHHCCC-EEEEECC------------CCCHHHHHHHHHHHHHH-----------CCEE--EEECCCHHH
T ss_conf             32258999999998198-4898659------------89878999999962042-----------6669--985578899


Q ss_pred             EEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCE
Q ss_conf             99971787731000445532367777641666544555654454047888625753334672588764510677443657
Q gi|254781051|r  325 KLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGN  404 (957)
Q Consensus       325 ~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGT  404 (957)
                      -         +|..---..+=+|+-=                .-|-..+-+-|||=+        ++|++.+    .||-
T Consensus        58 A---------~e~a~gA~~~Gvr~l~----------------~~K~vGlnva~D~l~--------~~~~~G~----~GG~  100 (595)
T TIGR03336        58 A---------VEVAAGAAWSGLRAFC----------------TMKHVGLNVAADPLM--------TLAYTGV----KGGL  100 (595)
T ss_pred             H---------HHHHHHHHHCCCCEEE----------------ECCCCCCCHHHHHHH--------HHHHHCC----CCEE
T ss_conf             9---------9998776442863899----------------856688441277888--------7652077----7559


Q ss_pred             EEEEECCCEECC-CCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             999841602012-4701024677840011220340587426788999999999999999738973998642
Q gi|254781051|r  405 IHLIINNQIGFT-TNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       405 iHiVvNNQIGFT-T~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      |=|+-.---... |++.|+|  .    .++.-..|||.=-  ||..+....+.|++.=.+|+.-|.+-++.
T Consensus       101 v~v~gDDpg~~SSq~eqdsr--~----~~~~a~iPvl~Ps--~~qE~~d~~~~af~LSr~~g~pV~lr~tt  163 (595)
T TIGR03336       101 VVVVADDPSMHSSQNEQDTR--H----YAKFAKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT  163 (595)
T ss_pred             EEEEECCCCCCCCCCHHHHH--H----HHHHCCCEEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             99994699985351677789--9----9998498267789--99999999999999999979987999887


No 39 
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.98  E-value=0.056  Score=34.64  Aligned_cols=156  Identities=19%  Similarity=0.138  Sum_probs=96.0

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EEC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89999985588743223455510015026889-835-9618999717877310004455323677776416665445556
Q gi|254781051|r  286 PRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QIC-GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       286 ~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~-g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      |..++.+.....|++.....|+=.|..+.... .+. .+...  ....=+.+=.=-|-++|..-|+.+            
T Consensus         1 P~~v~~~l~~~lp~d~iv~~D~G~~~~~~~~~~~~~~p~~~~--~~~~~g~mG~~lpaaiGa~lA~p~------------   66 (172)
T cd02004           1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRL--DAGTFGTLGVGLGYAIAAALARPD------------   66 (172)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEE--CCCCCCHHHHHHHHHHHHHHHCCC------------
T ss_conf             979999999648988099987737799999974737999498--079876477799999999997899------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-ECCCCC----H--------HCCCCCCCCH
Q ss_conf             54454047888625753334672588764510677443657999841602-012470----1--------0246778400
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GFTTNP----S--------SARSCTYASD  430 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GFTT~p----~--------d~RSs~Y~TD  430 (957)
                          +.|++|  -||.+|.=..---+|.---+||      .+.||+||+- |-...-    .        +.....| ..
T Consensus        67 ----~~Vv~i--~GDG~f~m~~~EL~Ta~~~~lp------i~~iV~nN~~~~~i~~~q~~~~~~~~~~~~~~~~~df-~~  133 (172)
T cd02004          67 ----KRVVLV--EGDGAFGFSGMELETAVRYNLP------IVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRY-DL  133 (172)
T ss_pred             ----CEEEEE--ECCCCHHCCCHHHHHHHHHCCC------EEEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCH-HH
T ss_conf             ----849999--7797340240788899984988------5999982883289999989872689874321899877-89


Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             11220340587426788999999999999999738973998642
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      +|+.++++-+.|  ++|+..-.+.+-|++    -++-++||++.
T Consensus       134 iA~a~G~~~~~v--~~~~el~~al~~a~~----~~~p~liev~i  171 (172)
T cd02004         134 VAEAFGGKGELV--TTPEELKPALKRALA----SGKPALINVII  171 (172)
T ss_pred             HHHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf             999759828997--899999999999995----89969999981


No 40 
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=95.89  E-value=0.06  Score=34.46  Aligned_cols=110  Identities=24%  Similarity=0.357  Sum_probs=68.8

Q ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             73100044553236777764166654455565445404788862575333467258876451067744365799984160
Q gi|254781051|r  333 SHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ  412 (957)
Q Consensus       333 SHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ  412 (957)
                      +.+-.--|.++|...|+.+                ++|++|.  ||.+|.--+  .|.....+   |+. ..+.||.||+
T Consensus        28 g~mG~~~p~AiGa~~a~p~----------------~~vi~i~--GDG~f~~~~--~el~Ta~~---~~~-~i~~iv~nN~   83 (150)
T pfam02775        28 GTMGYGLPAAIGAKLARPD----------------RPVVAIA--GDGGFQMNG--QELATAVR---YNL-PITVVVLNNG   83 (150)
T ss_pred             CHHHHHHHHHHHHHHHCCC----------------CEEEEEE--CCCCHHCCC--CHHHHHHH---HCC-CCCEEEEECC
T ss_conf             3232289999999997899----------------8499998--897211134--37999998---488-8568999764


Q ss_pred             E-ECCC---CCHH--CCCCCC-------CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             2-0124---7010--246778-------400112203405874267889999999999999997389739986
Q gi|254781051|r  413 I-GFTT---NPSS--ARSCTY-------ASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDI  472 (957)
Q Consensus       413 I-GFTT---~p~d--~RSs~Y-------~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDl  472 (957)
                      - |-+.   .+..  .+++.+       -..+||.++++-+.|  ++++....+.+=|+    +.++-++||+
T Consensus        84 ~yg~~~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v--~~~~el~~al~~a~----~~~gP~~ieV  150 (150)
T pfam02775        84 GYGMTRGQQTPFGGKRYSGPDGDLPPVDFAKLAEAYGAKGARV--ESPEELEEALKEAL----AHDGPALIDV  150 (150)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHH----HCCCCEEEEC
T ss_conf             2588899988742997456567888878999999859869997--89999999999998----2899989959


No 41 
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.55  E-value=0.1  Score=32.68  Aligned_cols=61  Identities=25%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             CCEEEEECCHHHHHHHHHHHHCC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             76899868857899999999769--9868999840148682899999985379983998067853178
Q gi|254781051|r  837 IRRVILCTGKVYYDLLDNRDMRN--IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMG  902 (957)
Q Consensus       837 v~rvi~csGKvyydL~~~r~~~~--~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~G  902 (957)
                      .+.+|+|.|-.|-...++.+...  -.+|.++|+-.+||||.++|.+.++++..   |-+=|+  |.|
T Consensus       246 a~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~~~---viVvE~--n~G  308 (350)
T PRK07119        246 AELVLVAYGTSSRIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEKLADKVKG---FLSVEM--SNG  308 (350)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEECEEEECEECCCCHHHHHHHHHCCCE---EEEECC--CCC
T ss_conf             999999956346899999999997598126687651068999999999946998---999858--886


No 42 
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=95.52  E-value=0.18  Score=30.82  Aligned_cols=156  Identities=21%  Similarity=0.286  Sum_probs=97.3

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EEC-CCEEEEEECCCCCCC---HHCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             989999985588743223455510015026889-835-961899971787731---000445532367777641666544
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QIC-GKDVKLLLQSNPSHL---EFVDPVVIGSVRARQDLKAGIVGE  359 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~-g~~v~lsL~~NPSHL---EaVnPVv~G~~RAkQd~~~d~~~~  359 (957)
                      .|..+|.++....|++.....|.=.|.-+.... ++. .+....     +..+   =.==|-++|-.-|.-+        
T Consensus         2 ~P~~~~~~L~~~lp~d~iiv~D~G~~~~~~~~~~~~~~p~~~~~-----s~~~g~mG~~lpaAIGa~la~p~--------   68 (186)
T cd02015           2 KPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLT-----SGGLGTMGFGLPAAIGAKVARPD--------   68 (186)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEC-----CCCCCHHHHHHHHHHHHHHHCCC--------
T ss_conf             87999999996589983999778688999999736189993984-----79873566599999999986899--------


Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-E---------CCCCC--HHC-CCCC
Q ss_conf             555654454047888625753334672588764510677443657999841602-0---------12470--102-4677
Q gi|254781051|r  360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-G---------FTTNP--SSA-RSCT  426 (957)
Q Consensus       360 ~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-G---------FTT~p--~d~-RSs~  426 (957)
                              ++|+  .|.||.+|.=..--.+|..-.+||      .+.||+||+- |         |-...  .+. ...-
T Consensus        69 --------r~vv--~i~GDG~f~m~~~EL~Ta~~~~lp------i~~iV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~pd  132 (186)
T cd02015          69 --------KTVI--CIDGDGSFQMNIQELATAAQYNLP------VKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPD  132 (186)
T ss_pred             --------CEEE--EEECCCHHHCCHHHHHHHHHHCCC------CEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             --------8189--997670775035999999986699------479999897068899999997289766656788877


Q ss_pred             CCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf             84001122034058742678899999999999999973897399864211
Q gi|254781051|r  427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYR  476 (957)
Q Consensus       427 Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YR  476 (957)
                      | ..+|+.++++-+.|  ++++....+.+-|++    .++-++||+..=+
T Consensus       133 ~-~~iA~a~G~~~~~v--~~~~el~~al~~a~~----~~gP~lieV~idp  175 (186)
T cd02015         133 F-VKLAEAYGIKGLRV--EKPEELEAALKEALA----SDGPVLLDVLVDP  175 (186)
T ss_pred             H-HHHHHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf             6-89999759769997--899999999999984----8997999999889


No 43 
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=95.40  E-value=0.055  Score=34.71  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=15.7

Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             11220340587426788999999999999999738973998642
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      +|+.++++=++|  ++||++-.|.+=|++    ..+-++||+++
T Consensus       525 lA~a~G~~g~rV--~~~~eL~~Al~~A~~----~~gP~lIeV~v  562 (581)
T PRK06112        525 IARACGCDGVRV--EDPASLAQALAAAEA----APGPFLIEVMT  562 (581)
T ss_pred             HHHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEE
T ss_conf             998789869997--999999999999984----89939999986


No 44 
>PRK08273 pyruvate decarboxylase; Provisional
Probab=95.37  E-value=0.25  Score=29.74  Aligned_cols=204  Identities=18%  Similarity=0.284  Sum_probs=107.4

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE-EEECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             98999998558874322345551001502688-98359618999717877310004455323677776416665445556
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCN-RQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~-~~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      .+..++.+.....|++.....|+=.|..+... .... +....++...=..+=.=-|-++|-.-|.-+            
T Consensus       367 ~p~~v~~~l~~~lp~daIv~~D~G~~~~w~~r~l~~~-~~~~~~~sg~~gsMG~glPaAIGA~lA~P~------------  433 (597)
T PRK08273        367 NPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMR-RGMMASLSGGLATMGPAVPYAIAAKFAHPD------------  433 (597)
T ss_pred             CHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCC-CCCEEEECCCCCCCCCHHHHHHHHHHHCCC------------
T ss_conf             9999999999858987389956863089999882478-997377468766645078999999985899------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHH-------HCCCCCCCCCEEEEEECCC-EECC--------CCCHHCCCCCC
Q ss_conf             544540478886257533346725887645-------1067744365799984160-2012--------47010246778
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGL-------SGLSGYTVAGNIHLIINNQ-IGFT--------TNPSSARSCTY  427 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~l-------s~l~gY~tGGTiHiVvNNQ-IGFT--------T~p~d~RSs~Y  427 (957)
                          +.|++  |-||.+|.=-|+ .|-...       .++|      .|-||.||+ .|.-        -+|...-+...
T Consensus       434 ----r~Vv~--i~GDG~f~M~~~-~EL~Ta~ry~~~~~~lp------vvvvV~NN~~~g~i~~~q~~~~g~~~~~~~~~l  500 (597)
T PRK08273        434 ----RPVIA--LVGDGAMQMNGM-AELITVAKYWRQWADPR------LIVLVLNNRDLNQVTWEQRVMEGDPKFEASQQL  500 (597)
T ss_pred             ----CCEEE--EECCCHHHHCHH-HHHHHHHHHHHHHCCCC------EEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             ----95899--981615763508-89999999764014899------799998185157999999984588776764568


Q ss_pred             -C---CHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf             -4---001122034058742678899999999999999973897399864211256564354223557888886718998
Q gi|254781051|r  428 -A---SDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSV  503 (957)
Q Consensus       428 -~---TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v  503 (957)
                       -   ..+|+.++++=+.|  ++||.+-.|.+-|++    -.+-++||+++       .-|+|.+---+.++..+     
T Consensus       501 p~~d~a~~A~a~G~~g~rV--~~~~el~~Al~~Al~----~~~P~lIeV~~-------Dp~~~p~pp~~~~~~~~-----  562 (597)
T PRK08273        501 PDVPYARFAELLGLKGIRV--DDPEQLGAAWDEALA----ADRPVVLEVKT-------DPNVPPLPPHITLEQAK-----  562 (597)
T ss_pred             CCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEC-------CCCCCCCCCCCCHHHHH-----
T ss_conf             9999999999789979998--999999999999984----89978999971-------89999999968799999-----


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999864489898999999999999977566
Q gi|254781051|r  504 LQLYADSLMKNQVISKQELQSLANNWHKYLEAEY  537 (957)
Q Consensus       504 ~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~  537 (957)
                        -|+..+++ |.  .++..-+++..++.|+.-+
T Consensus       563 --~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~  591 (597)
T PRK08273        563 --HFASALLK-GD--PDEGGVIVETAKQVLAEVL  591 (597)
T ss_pred             --HHHHHHHC-CC--CCHHHHHHHHHHHHHHHHC
T ss_conf             --99999966-89--4212689999999999865


No 45 
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=95.29  E-value=0.29  Score=29.29  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCEEEE-EEEC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999998558874322345551001502688-9835-96189997178773100044553236777764166654455565
Q gi|254781051|r  287 RSIFYEFKGKGPSEKEYSGDVKYHLGLCCN-RQIC-GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISL  364 (957)
Q Consensus       287 ~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~-~~~~-g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~  364 (957)
                      .+++++.....|++.....|+=.|..+... ..+. .+..+++..  =+-+=.=-|-++|..-|.-|             
T Consensus         2 ~~Vv~~L~~~lp~daIv~~D~G~~~~~~~~~~~~~~p~~~~~~~g--~g~MG~~lPaAiGA~lA~Pd-------------   66 (205)
T cd02003           2 TEVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYG--YSCMGYEIAAGLGAKLAKPD-------------   66 (205)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEECCCCCEEECCCC--CHHHHHHHHHHHHHHHHCCC-------------
T ss_conf             589999996689981999889850789996530589990875887--40688999999999985899-------------


Q ss_pred             CCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-E-------------CCCCCHH-------CC
Q ss_conf             4454047888625753334672588764510677443657999841602-0-------------1247010-------24
Q gi|254781051|r  365 VERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-G-------------FTTNPSS-------AR  423 (957)
Q Consensus       365 ~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-G-------------FTT~p~d-------~R  423 (957)
                         ++|+  .|-||.+|-=-+---+|.---+||      .+.||+||+. |             |-|.-++       .-
T Consensus        67 ---r~Vv--~i~GDG~f~m~~~EL~Tavr~~lp------v~~vV~NN~~yg~i~~~Q~~~~~~~~~~~~~~~~~~~~~~~  135 (205)
T cd02003          67 ---REVY--VLVGDGSYLMLHSEIVTAVQEGLK------IIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLD  135 (205)
T ss_pred             ---CCEE--EEECCCCCCCCHHHHHHHHHHCCC------CEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf             ---8289--997674111520489999982995------46999989942899999997446763311101456555567


Q ss_pred             CCCCCCHH---HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             67784001---12203405874267889999999999999997389739986421
Q gi|254781051|r  424 SCTYASDI---SKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       424 Ss~Y~TDi---AK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      ....+.|.   |+.++++-+.|  ++|+..-.+.+=|++    .++-++||+.+=
T Consensus       136 ~~~~~~Df~~~A~a~G~~g~~V--~~~~eL~~Al~~Al~----~~gP~vIev~vd  184 (205)
T cd02003         136 GALLPVDFAANARSLGARVEKV--KTIEELKAALAKAKA----SDRTTVIVIKTD  184 (205)
T ss_pred             CCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEEC
T ss_conf             7778988999998749708993--888999999999996----899699999937


No 46 
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=95.05  E-value=0.24  Score=29.83  Aligned_cols=158  Identities=22%  Similarity=0.204  Sum_probs=95.9

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE-EEEC-CCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             98999998558874322345551001502688-9835-961899971787731000445532367777641666544555
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCN-RQIC-GKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSI  362 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~-~~~~-g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~  362 (957)
                      .|..+|.+.....|++.....|+=.|..+... .++. ++....+.  .=+-+=.==|-++|..-|+-+           
T Consensus         3 ~P~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~p~~~~~~~--~~g~mG~glpaAiGa~la~p~-----------   69 (178)
T cd02014           3 HPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSG--LLATMGNGLPGAIAAKLAYPD-----------   69 (178)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEECCC--CCCHHHHHHHHHHHHHHHCCC-----------
T ss_conf             9899999999448998099985838799999977858998487378--865377899999999984899-----------


Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-ECCC---CCHHCC---CCCCC---CHHH
Q ss_conf             654454047888625753334672588764510677443657999841602-0124---701024---67784---0011
Q gi|254781051|r  363 SLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GFTT---NPSSAR---SCTYA---SDIS  432 (957)
Q Consensus       363 ~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GFTT---~p~d~R---Ss~Y~---TDiA  432 (957)
                           ++|++|.  ||.+|-=-+--.+|..--+||      .+.||.||.- |...   .....+   ....+   ..+|
T Consensus        70 -----~~Vv~i~--GDG~f~m~~~El~Ta~~~~lp------i~~vV~nN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA  136 (178)
T cd02014          70 -----RQVIALS--GDGGFAMLMGDLITAVKYNLP------VIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIA  136 (178)
T ss_pred             -----CEEEEEE--CCCHHHCCHHHHHHHHHHCCC------CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             -----8089997--770674061899989985898------139999896158999999985799752537999889999


Q ss_pred             HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             220340587426788999999999999999738973998642
Q gi|254781051|r  433 KSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       433 K~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      |.++++-+.|.  +++....+.+-|++    .++-++||+.+
T Consensus       137 ~a~G~~~~~v~--~~~el~~al~~a~~----~~gP~lieV~v  172 (178)
T cd02014         137 EAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVT  172 (178)
T ss_pred             HHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf             97697079978--99999999999996----89979999980


No 47 
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=95.05  E-value=0.26  Score=29.63  Aligned_cols=156  Identities=17%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEE-EEE-CCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8999998558874322345551001502688-983-59618999717877310004455323677776416665445556
Q gi|254781051|r  286 PRSIFYEFKGKGPSEKEYSGDVKYHLGLCCN-RQI-CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       286 ~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~-~~~-~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      |..++.+.....|++.....|+=.|..+... ..+ ..+....+  ..=+.+=.==|.++|-.-|.-+            
T Consensus         1 P~~v~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~p~~~~~s--~~~g~mG~glpaAiGa~lA~p~------------   66 (177)
T cd02010           1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLIS--NGLATMGVALPGAIGAKLVYPD------------   66 (177)
T ss_pred             CHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCEEECC--CCCCHHHHHHHHHHHHHHHCCC------------
T ss_conf             97999999976899959998585879999996775899908748--9863688899999999987899------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-ECCC---CCHHCCCCCCCC--------HH
Q ss_conf             54454047888625753334672588764510677443657999841602-0124---701024677840--------01
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GFTT---NPSSARSCTYAS--------DI  431 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GFTT---~p~d~RSs~Y~T--------Di  431 (957)
                          +.|++|  -||.+|.=.+---+|..--+||      .+.||+||+- |...   .....  ..+.+        .+
T Consensus        67 ----~~Vv~i--~GDG~f~m~~~EL~Ta~~~~lp------i~iiV~NN~~~g~i~~~q~~~~~--~~~~~~~~~~d~~~l  132 (177)
T cd02010          67 ----RKVVAV--SGDGGFMMNSQELETAVRLKIP------LVVLIWNDNGYGLIKWKQEKEYG--RDSGVDFGNPDFVKY  132 (177)
T ss_pred             ----CEEEEE--ECCCCCEECCHHHHHHHHHCCC------EEEEEEECCHHHHHHHHHHHHCC--CCCCCCCCCCCHHHH
T ss_conf             ----859999--2898611066688899972884------03999989804899999998639--753461899998999


Q ss_pred             HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             12203405874267889999999999999997389739986421
Q gi|254781051|r  432 SKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       432 AK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      |+.++++-+.|  ++|+..-.+.+-|++    -++-++||++.=
T Consensus       133 A~a~G~~~~~V--~~~~el~~al~~a~~----~~gp~liev~vD  170 (177)
T cd02010         133 AESFGAKGYRI--ESADDLLPVLERALA----ADGVHVIDCPVD  170 (177)
T ss_pred             HHHCCCEEEEE--CCHHHHHHHHHHHHH----CCCCEEEEEEEC
T ss_conf             99879879998--999999999999984----899599999986


No 48 
>KOG0523 consensus
Probab=94.76  E-value=0.38  Score=28.35  Aligned_cols=412  Identities=17%  Similarity=0.210  Sum_probs=209.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCC
Q ss_conf             45532367777641666544555654454047888625753334672588764510677443657999841602012470
Q gi|254781051|r  340 PVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP  419 (957)
Q Consensus       340 PVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p  419 (957)
                      .++.|+|-++-. .+.          -.++|.+|+  ||.... .|+++|+++++.  .|..+--|-|.=||||+--+.-
T Consensus       125 s~a~GmA~~~k~-~~k----------~~~rv~~vl--GDG~~~-eG~~~Ea~s~Ag--~l~ldnLVai~D~n~is~~g~t  188 (632)
T KOG0523         125 SNAVGMAYAGKH-LGK----------ASNRVYCVL--GDGCLT-EGSVWEAMSLAG--HLKLDNLVAIYDNNKISIDGAT  188 (632)
T ss_pred             HHHHHHHHHHHH-HCC----------CCCEEEEEE--CCCCCC-CCHHHHHHHHHH--HCCCCCEEEEECCCCCCCCCCC
T ss_conf             777789988876-412----------446089997--685001-441888876640--2254878999726644578986


Q ss_pred             HHCCCCCCCCHHHH----HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             10246778400112----20340587426788999999999999999738973998642112565643542235578888
Q gi|254781051|r  420 SSARSCTYASDISK----SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYK  495 (957)
Q Consensus       420 ~d~RSs~Y~TDiAK----~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~  495 (957)
                      ..    -.+-||.|    +++--+.-|+++|.|+..++..-|.   +.=+|--.|-.-.+                    
T Consensus       189 ~~----~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~--------------------  241 (632)
T KOG0523         189 SL----GFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTF--------------------  241 (632)
T ss_pred             CC----CCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH---HCCCCCEEEEEEEE--------------------
T ss_conf             55----7674278888887485579874858899999986554---22688503554555--------------------


Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             8671899899999998644898989999999999999775666541258--76566665686266677899999999887
Q gi|254781051|r  496 TIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYC--PEKLGLLHNGENERKNSVSKEILKKIGSS  573 (957)
Q Consensus       496 ~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~--~~~~~~~~~~~~~~~T~v~~~~L~~i~~~  573 (957)
                                      +..|....+ ...+...  ..++...+..|+..  |...-  .-. +.+. .+|....+..-..
T Consensus       242 ----------------~g~G~~~ig-~~~~Hg~--pl~~~~~~~~k~~~~~P~~~~--~v~-~~~~-~~p~~~~~~~~~~  298 (632)
T KOG0523         242 ----------------IGRGSPYIG-SESVHGA--PLGEDDVERVKSIKGLPVLIF--VVP-EKVK-LYPEKPVEDARAI  298 (632)
T ss_pred             ----------------EECCCCCCC-CCCCCCC--CCHHHHHHHHHHHCCCCCEEE--EEC-CCCC-CCCCCCCCCCCCC
T ss_conf             ----------------404755435-5322588--550668998886418762368--716-1125-4777540124465


Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-CCCEE-EEEC--CCCCCCCCCCCEEEEEECCCC
Q ss_conf             4368998620567788899899873343564211478988898863-58315-7850--100223332302799977888
Q gi|254781051|r  574 IIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCY-EGYKV-RLSG--QDCERGTFSHRHAILCDQETG  649 (957)
Q Consensus       574 l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~-eG~~V-RlsG--QD~~RGTFshRHavl~dq~t~  649 (957)
                      ...+|+.-.-++.             .=..-|=+-|--.+|+.-|. ++.-. |+-|  -|-+-+||+         +..
T Consensus       299 ~~~i~~~~~~~~p-------------~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t---------d~~  356 (632)
T KOG0523         299 SVRIPKIWEKSLP-------------TYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT---------DFF  356 (632)
T ss_pred             CCCCCCCCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH---------HHC
T ss_conf             5676655323577-------------445586005479999999999764285648875466787166---------543


Q ss_pred             CEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             44556344278984599982431111013432022113865311100002442454102256554202576233368135
Q gi|254781051|r  650 KRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVC  729 (957)
Q Consensus       650 ~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvl  729 (957)
                      .+-.        +.+|  .|--.-|....||--|-+...+ . .   +=-|-|+|=-|-.+||---++-    .++.++.
T Consensus       357 ~~~~--------p~R~--i~~giaEq~mv~ia~G~a~~g~-~-~---Pf~~tf~~F~trA~dqvr~~a~----s~~~v~~  417 (632)
T KOG0523         357 PKRF--------PERF--IECGIAEQNMVGIANGIACRGR-T-I---PFCGTFAAFFTRAFDQVRMGAL----SQANVIY  417 (632)
T ss_pred             CCCC--------CCCE--EEEEEEHHHHHHHHHCHHCCCC-C-C---CHHHHHHHHHHHHHHHEEEHHH----CCCCCEE
T ss_conf             1227--------6642--7873202116775402311788-6-6---5138799999875302443223----1688579


Q ss_pred             ECCCCCCCC---CCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCC-HHHCCCCCCCCHH
Q ss_conf             436888888---876564405788752143782697248899999999997435348868985660-2210801268878
Q gi|254781051|r  730 LLPHGYEGQ---GPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPK-SLLRHKRVVSSLS  805 (957)
Q Consensus       730 lLPHGyeGq---GPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPK-sLLR~~~a~S~l~  805 (957)
                      ..-|-==|-   ||-|  +-+|-.--+.+-.||.|-.|+--.-.+++.---+...- .|-|.-++. ++--.+  -++.+
T Consensus       418 v~th~~i~~GeDGPth--~~iedla~frsiPn~~v~~PaD~~et~~av~~Aa~~~~-~p~i~~~~r~~~~~~~--~~~~~  492 (632)
T KOG0523         418 VATHDSIGLGEDGPTH--QPIEDLAMFRSIPNMIVFRPADGNETENAVATAANTKG-TPSIRTLSRQNLPIYN--NTEIE  492 (632)
T ss_pred             EEEECCCCCCCCCCCC--CCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCC--CCCHH
T ss_conf             9970451136888655--63889999870788547710763789999999870489-6069984777656568--96554


Q ss_pred             HHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHH
Q ss_conf             9379986035157764334445444579545768998688578999999997699--868999840148682899999
Q gi|254781051|r  806 DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIK  881 (957)
Q Consensus       806 d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~  881 (957)
                      +...|.   -|+-|.              + -+-+++-+|---|.-+++-+....  -++-+|-.=-..||-...|.+
T Consensus       493 ~igkg~---~vl~~~--------------~-~dV~LiG~Gs~v~~cl~AA~~L~e~gi~vrVvd~~~~kplD~~li~~  552 (632)
T KOG0523         493 EIGKGK---YVLQEV--------------E-PDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRS  552 (632)
T ss_pred             HHCCCC---EEEECC--------------C-CCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             532650---798638--------------8-87799926589999999999998649638995453200023587765


No 49 
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=94.50  E-value=0.094  Score=32.95  Aligned_cols=89  Identities=21%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             CCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             768998688578999999997699--868999840148682899999985379983998067853178457899769999
Q gi|254781051|r  837 IRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV  914 (957)
Q Consensus       837 v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~  914 (957)
                      .+-+|++.|=.|-...++.+....  ..|.++|+-.|+|||.++|++.++++.++   -+=|  .|+|.+.-.   ++..
T Consensus       275 Ae~~iV~~GSt~~~~~eAv~~Lr~~G~kvg~l~~~~l~PfP~~~i~e~l~~~k~v---~VvE--~N~Gq~~~~---i~~~  346 (375)
T PRK09627        275 AEILIIAYGSVSLSAKEAINRLREEGIKVGLFRPITLWPSPAKRLKEIGDKFEKI---LVIE--LNMGQYLEE---IERV  346 (375)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEE---EEEE--CCCHHHHHH---HHHH
T ss_conf             8789999564378999999999974990537975245799989999999579989---9980--781599999---9997


Q ss_pred             HHHCCCCCCEEEEEECCCCC
Q ss_conf             87505677601897536646
Q gi|254781051|r  915 LHSIGADYSRVRYVGRLPSA  934 (957)
Q Consensus       915 l~~~~~~~~~~~y~gR~~~a  934 (957)
                      ... .....-++|-|||-.+
T Consensus       347 ~~~-~~~~~i~k~~G~pf~~  365 (375)
T PRK09627        347 MQR-DDFHFLGKANGRPISP  365 (375)
T ss_pred             HCC-CCCCEEEEECCCCCCH
T ss_conf             389-8751570069985799


No 50 
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=94.23  E-value=0.13  Score=31.95  Aligned_cols=93  Identities=22%  Similarity=0.154  Sum_probs=62.3

Q ss_pred             HHCCEEEEECCHHHHHHHHHHHHCC---CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC-HHHHHHH
Q ss_conf             4576899868857899999999769---98689998401486828999999853799839980678531784-5789976
Q gi|254781051|r  835 SHIRRVILCTGKVYYDLLDNRDMRN---IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGA-WTFIEPY  910 (957)
Q Consensus       835 ~~v~rvi~csGKvyydL~~~r~~~~---~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~Ga-W~~v~~r  910 (957)
                      +..++||+|.|...-...++-....   -.+|.++|+-.++|||.+++.+.+.+.. +..|-.+|  .|.|. |.-++-.
T Consensus       255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~-~~~Vl~~e--~~~g~~~~~l~~~  331 (365)
T COG0674         255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTN-AVVVLDVE--ISLGGLAEPLYLE  331 (365)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCC-EEEEEEEE--CCCCCCHHHHHHH
T ss_conf             97278999967524868999999887418546899997756899899997613462-26999982--3675210028886


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             999987505677601897536646
Q gi|254781051|r  911 LEKVLHSIGADYSRVRYVGRLPSA  934 (957)
Q Consensus       911 l~~~l~~~~~~~~~~~y~gR~~~a  934 (957)
                      ....+    ......++-||+-..
T Consensus       332 ~~~~~----~~~~~~~~~g~~~~~  351 (365)
T COG0674         332 VLAAL----YVESRYKLGGRDFTP  351 (365)
T ss_pred             HHHHE----EECCCCCCCCEECCH
T ss_conf             43120----102202218863699


No 51 
>PRK05899 transketolase; Reviewed
Probab=94.03  E-value=0.58  Score=26.99  Aligned_cols=457  Identities=16%  Similarity=0.161  Sum_probs=210.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE-CCCEECCC
Q ss_conf             44553236777764166654455565445404788862575333467258876451067744365799984-16020124
Q gi|254781051|r  339 DPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLII-NNQIGFTT  417 (957)
Q Consensus       339 nPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVv-NNQIGFTT  417 (957)
                      =+++.|.+.|........ +. ........+|.+|+  ||++.. .|+.+|.||++.-.+-+   -+=+|+ +|.+.--.
T Consensus       124 is~a~G~A~a~~~~~~~~-~~-~~~~~~~~~v~avi--GDG~l~-eG~a~EAln~a~~~~l~---nLIvI~ndN~~sIdg  195 (661)
T PRK05899        124 LANAVGMALAEKLLAARF-NR-PGHDIVDHYTYVLL--GDGCLM-EGISHEACSLAGHLKLG---NLIVIYDDNRISIDG  195 (661)
T ss_pred             HHHHHHHHHHHHHHHHHH-CC-CCCCCCCCEEEEEE--EECCCC-CHHHHHHHHHHCCCCCC---CEEEEEECCCEEECC
T ss_conf             999999999999986652-87-75566577499998--206435-67899999864504689---889999479700066


Q ss_pred             CCHHCCCCCCCCHHHHHHCC---CEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             70102467784001122034---05874-267889999999999999997389739986421125656435422355788
Q gi|254781051|r  418 NPSSARSCTYASDISKSIGI---PIFHV-NGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMM  493 (957)
Q Consensus       418 ~p~d~RSs~Y~TDiAK~i~a---PI~HV-N~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~m  493 (957)
                      +-.    .....|+.+.+.+   =++.| +|.|++++..|.+-|.+  .+ .|-++|-.  .-.-|+.-   |.+-.+..
T Consensus       196 ~v~----~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~--~~-~kPtvI~v--~TiKG~G~---p~~e~~~~  263 (661)
T PRK05899        196 DTS----GWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKA--ET-DKPTLIIA--KTIIGKGS---PNKEGTHK  263 (661)
T ss_pred             CCC----CCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHH--CC-CCCEEEEE--EECCCCCC---CCCCCCHH
T ss_conf             404----210598999999769867843799999999999999986--46-99868999--82366787---32346513


Q ss_pred             HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------CCCCCCCC--
Q ss_conf             8886718998999999986448989899999999999997756665412587656666------------56862666--
Q gi|254781051|r  494 YKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLL------------HNGENERK--  559 (957)
Q Consensus       494 Y~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~------------~~~~~~~~--  559 (957)
                           .|             .+.++.+++...++.+.    -  +...-+.|......            ..|.....  
T Consensus       264 -----~H-------------g~~L~~ee~~~~~~~lg----~--~~~~f~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~  319 (661)
T PRK05899        264 -----VH-------------GAPLGAEEIAAARKALG----W--DYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAAY  319 (661)
T ss_pred             -----HH-------------CCCCCHHHHHHHHHHCC----C--CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             -----32-------------58755168999999629----9--986666886888988752002337899999999985


Q ss_pred             CCCCHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC---CCE--EEEECCCCCC
Q ss_conf             7789999999988743-689986205677888998998733435642114789888988635---831--5785010022
Q gi|254781051|r  560 NSVSKEILKKIGSSII-RLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYE---GYK--VRLSGQDCER  633 (957)
Q Consensus       560 T~v~~~~L~~i~~~l~-~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~e---G~~--VRlsGQD~~R  633 (957)
                      .....+...+..+.+. ..|.....-             ...+..    .|.--|||..|.+   -.|  |=+|. |..-
T Consensus       320 ~~~~p~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~----~Atr~afg~~L~~l~~~~p~ivg~sA-Dl~~  381 (661)
T PRK05899        320 AAAYPELAAEFERRAGELPAGWDAAL-------------PEKGKK----VATRKASGKALNALAAALPELVGGSA-DLAG  381 (661)
T ss_pred             HHHCHHHHHHHHHHHCCCCCCHHHHH-------------CCCCCC----HHHHHHHHHHHHHHHHHCCCEEEEEC-CCCC
T ss_conf             34376789999875246674023331-------------124653----04999999999999854876178704-5478


Q ss_pred             CCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             33323027999778884455634427898459998243111101343202211386531110000244245410225655
Q gi|254781051|r  634 GTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQF  713 (957)
Q Consensus       634 GTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqf  713 (957)
                      .|...    +.    +.. .|...  .-+++|  +|-=..|.+..++--|.++..  .+.-+-+-|.=|.   |-..||-
T Consensus       382 St~~~----~~----~~~-~~~~e--~~~~r~--~~~GIaE~~mv~~aaGla~~G--~~~P~~~tf~~F~---~ra~dqi  443 (661)
T PRK05899        382 SNNTE----IK----GSK-DFTPD--DYSGRY--IHYGVREFAMAAIMNGLALHG--GFIPFGGTFLVFS---DYARNAI  443 (661)
T ss_pred             CCCCC----CC----CCC-CCCCC--CCCCCC--CCCCCCHHHHHHHHHHHHHCC--CCCCEEEEHHHHH---HHHHHHH
T ss_conf             86644----25----577-76765--789873--244620899999999998549--9884012079899---9989999


Q ss_pred             HHHHHHHHCCCCCCEEECCC-CCC--CCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             42025762333681354368-888--888765644057887521437826972488999999999974353488689856
Q gi|254781051|r  714 ITAGEQKWLCTSNLVCLLPH-GYE--GQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMA  790 (957)
Q Consensus       714 iss~e~KW~~~sglvllLPH-Gye--GqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~t  790 (957)
                      --++-   ++ ...++.+-| |..  .-||-|.  =+|-.-.|..=.||.|..|+.+.+.-++++.-+.+. ..|-.+-.
T Consensus       444 r~~al---~~-~~v~~v~t~~Gi~vG~DG~THq--~i~dla~lr~iPn~~v~~P~d~~E~~~~~~~a~~~~-~gp~~ir~  516 (661)
T PRK05899        444 RLAAL---MK-LPVIYVFTHDSIGVGEDGPTHQ--PVEQLASLRAIPNLTVIRPADANETAAAWKLALERK-DGPSALVL  516 (661)
T ss_pred             HHHHH---HC-CCEEEEEECCCCCCCCCCCCHH--HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             98876---04-8749999787523489986612--467899985589967981599999999999999669-99789996


Q ss_pred             CCHHHCC-CCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCC--CEEEEE
Q ss_conf             6022108-0126887893799860351577643344454445795457689986885789999999976998--689998
Q gi|254781051|r  791 PKSLLRH-KRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLR  867 (957)
Q Consensus       791 PKsLLR~-~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~--~vaivR  867 (957)
                      |+.-+-. .....+.+.+..|. .. ++.+.               .-+=.|++||-....-+++.+....+  ++.+|-
T Consensus       517 ~r~~~p~~~~~~~~~~~~~~G~-~~-~~~~~---------------~~dv~iia~G~~v~~al~Aa~~L~~~gi~~~Vv~  579 (661)
T PRK05899        517 SRQNLPVLETTEEQDEGVAKGG-YV-LKDSG---------------GPDVILIATGSEVHLALEAAKELEAEGIKVRVVS  579 (661)
T ss_pred             CCCCCCCCCCCCCCHHHHCCCC-EE-EEECC---------------CCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             6887787787765144421661-89-99879---------------9988999832999999999999986499869997


Q ss_pred             EECCCCCHHH---HHHHHHHHCCCC-EEEEECCCCCCCC
Q ss_conf             4014868289---999998537998-3998067853178
Q gi|254781051|r  868 IEQLYPFPED---YLIKVLSRFVQA-EIVWCQEEPQNMG  902 (957)
Q Consensus       868 iEqLyPfP~~---~l~~~l~~y~~~-e~vW~QEEp~N~G  902 (957)
                      +--+=||..+   .+..+|+.  +. .+|=+ |+..-+|
T Consensus       580 ~~s~~pld~~~~~~~~~vl~~--~~~~ivtv-E~~~~~g  615 (661)
T PRK05899        580 MPSTELFDEQDAAYKESVLPA--AVTKRVAV-EAGVADG  615 (661)
T ss_pred             CCCCCHHHCCCHHHHHHHCCC--CCCCEEEE-CCCHHHH
T ss_conf             688724546749899864276--78838998-4884765


No 52 
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.90  E-value=0.38  Score=28.33  Aligned_cols=39  Identities=8%  Similarity=0.087  Sum_probs=19.2

Q ss_pred             HHHHCCCCCEEEEECCCHHHHHHHHHHHHCC--CCCCCEEE
Q ss_conf             8752143782697248899999999997435--34886898
Q gi|254781051|r  750 FLQMCAENNMYVANCTSPANYFHILRRQIYD--RSSRPLIM  788 (957)
Q Consensus       750 fLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r--~~rkPLiv  788 (957)
                      |-+++.--...-.-.+||+.+=-+|+|=+-.  .--+|-+|
T Consensus       518 f~~~A~a~G~~g~rV~~~~el~~al~~Al~~~~~~g~P~li  558 (589)
T PRK07525        518 YAGIARAMGAEGVVVDTQEELGPALKRAIDAQMNEGKTTVI  558 (589)
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             89999977987999899999999999999733358994899


No 53 
>PRK06154 hypothetical protein; Provisional
Probab=93.90  E-value=0.3  Score=29.16  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999999999987379107998067
Q gi|254781051|r  246 IIPAIEEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       246 lIP~L~~ii~~a~~~Gv~eiviGMa  270 (957)
                      ||-.-|.|++.-.+.||+.|. |+|
T Consensus        11 ~m~~ad~i~~~L~~~GV~~iF-G~P   34 (556)
T PRK06154         11 LMKAVDEVARILKAEGTELLF-GFP   34 (556)
T ss_pred             CCCHHHHHHHHHHHCCCCEEE-ECC
T ss_conf             755999999999987998999-554


No 54 
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.70  E-value=0.12  Score=32.08  Aligned_cols=162  Identities=20%  Similarity=0.243  Sum_probs=97.0

Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE-EECCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             989999985588743223455510015026889-8359618999717877310004455323677776416665445556
Q gi|254781051|r  285 LPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR-QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSIS  363 (957)
Q Consensus       285 p~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~-~~~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~  363 (957)
                      .|..++.+.....+.+...+.||=.|.-+.... .+. ++=+.-....-..+=.--|-++|..-|.-+            
T Consensus       360 ~p~~v~~~l~~~~~~daiv~~d~G~~~~w~~~~~~~~-~p~~~~~s~~~GtMG~glPaAIGAkla~P~------------  426 (550)
T COG0028         360 KPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFY-RPRRFLTSGGLGTMGFGLPAAIGAKLAAPD------------  426 (550)
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCC-CCCCEEECCCCCCCCCHHHHHHHHHHHCCC------------
T ss_conf             8899999999866998799978728689999845557-887156579986111248999998863899------------


Q ss_pred             CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC-EECCCCCHHC----C-CCCC-----CCHHH
Q ss_conf             5445404788862575333467258876451067744365799984160-2012470102----4-6778-----40011
Q gi|254781051|r  364 LVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ-IGFTTNPSSA----R-SCTY-----ASDIS  432 (957)
Q Consensus       364 ~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ-IGFTT~p~d~----R-Ss~Y-----~TDiA  432 (957)
                          ++|++|.  ||.+|.=.  ++|-....   -|+. -.+.||.||+ .|+...-.+.    | |..+     -.-+|
T Consensus       427 ----r~Vv~i~--GDG~F~m~--~qEL~Ta~---r~~l-pv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klA  494 (550)
T COG0028         427 ----RKVVAIA--GDGGFMMN--GQELETAV---RYGL-PVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLA  494 (550)
T ss_pred             ----CCEEEEE--CCCHHHCC--HHHHHHHH---HHCC-CEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             ----8289997--02368507--98999999---8689-97999997844345089988734778551115887689999


Q ss_pred             HHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             220340587426788999999999999999738973998642112
Q gi|254781051|r  433 KSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRR  477 (957)
Q Consensus       433 K~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr  477 (957)
                      +.+++.-+.|.  +||.+-.+.+=|++-.-.    ++||.+-=+.
T Consensus       495 ea~G~~g~rv~--~~~el~~al~~al~~~~p----~lidv~id~~  533 (550)
T COG0028         495 EAYGAKGIRVE--TPEELEEALEEALASDGP----VLIDVVVDPE  533 (550)
T ss_pred             HHCCCEEEEEC--CHHHHHHHHHHHHHCCCC----EEEEEEECCC
T ss_conf             97798259968--889999999999707998----8999983776


No 55 
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.40  E-value=0.4  Score=28.21  Aligned_cols=15  Identities=13%  Similarity=0.195  Sum_probs=5.7

Q ss_pred             ECCCHHHHHHHHHHH
Q ss_conf             248899999999997
Q gi|254781051|r  763 NCTSPANYFHILRRQ  777 (957)
Q Consensus       763 ~~ttpAq~FH~LRRQ  777 (957)
                      -.++|.++=-+|+|=
T Consensus       526 ~V~~~~el~~Al~~A  540 (579)
T TIGR03457       526 VVDKPEDVGPALKKA  540 (579)
T ss_pred             EECCHHHHHHHHHHH
T ss_conf             979999999999999


No 56 
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=93.30  E-value=0.75  Score=26.12  Aligned_cols=211  Identities=17%  Similarity=0.146  Sum_probs=117.2

Q ss_pred             CCCEEEEEECCCEECCC--CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             36579998416020124--7010246778400112203405874267889999999999999997389739986421125
Q gi|254781051|r  401 VAGNIHLIINNQIGFTT--NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF  478 (957)
Q Consensus       401 tGGTiHiVvNNQIGFTT--~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~  478 (957)
                      +.|-+=||+---=|--.  +..|+|  .    .+|.-..|||-=-  ||-++....+.|+|.-.+|+.-|++  -|.-|-
T Consensus       108 v~GGlviv~aDDpg~~SSqneqdsr--~----y~~~a~iPvLeP~--d~Qea~d~~~~afelSe~~~~pVil--r~ttr~  177 (640)
T COG4231         108 VTGGLVIVVADDPGMHSSQNEQDSR--A----YGKFALIPVLEPS--DPQEAYDYVKYAFELSEKSGLPVIL--RTTTRV  177 (640)
T ss_pred             CCCCEEEEECCCCCCCCCCCHHHHH--H----HHHHCCCEEECCC--CHHHHHHHHHHHHHHHHHHCCCEEE--EEEEEE
T ss_conf             6660899981698864453566768--9----8885076120689--8699999999998777873897899--998643


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCHHHH-HHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CC
Q ss_conf             6564354223557888886718998999-9999864489898999-9999999999775666541258765666656-86
Q gi|254781051|r  479 GHNEGDEPSFTQPMMYKTIRSHKSVLQL-YADSLMKNQVISKQEL-QSLANNWHKYLEAEYKESESYCPEKLGLLHN-GE  555 (957)
Q Consensus       479 GHNE~DeP~fTQP~mY~~I~~hp~v~~~-Y~~~Li~~g~it~~e~-~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~-~~  555 (957)
                      +|-.+|=       -...++..+..+.. ...+-....+.-++.. ...+.....+++++.+......-++..+..+ ..
T Consensus       178 ~h~~~~V-------~~~~~~~~~~~~~~~~~~k~~~~~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~l  250 (640)
T COG4231         178 SHSRGDV-------EVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKL  250 (640)
T ss_pred             ECCCEEE-------EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
T ss_conf             0221028-------824666787765212434786632306742112567889999999999986486563136887856


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCC---CCHHHHHHHHHHHHH------HCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             266677899999999887436899862---056778889989987------33435642114789888988635831578
Q gi|254781051|r  556 NERKNSVSKEILKKIGSSIIRLPKSFN---THKIVERLMANRQKM------IETGKGIDWSMAESLAFGSLCYEGYKVRL  626 (957)
Q Consensus       556 ~~~~T~v~~~~L~~i~~~l~~~Pe~f~---~h~~v~k~~~~R~~~------~~~~~~iDW~~AE~LA~~SLl~eG~~VRl  626 (957)
                      --+.-|++...+++..+.+---.+=|+   +||--.+.+.+=.+-      +|.+++    .-|.=.-..|..+|.+|.+
T Consensus       251 GII~~G~ay~yVkeAl~~lgl~~~~lklg~~~Plp~~~i~~F~~g~~~vlVVEE~~P----~iE~qv~~~l~~~~~~~~v  326 (640)
T COG4231         251 GIIASGIAYNYVKEALEDLGLDDELLKLGTPYPLPEQLIENFLKGLERVLVVEEGEP----FIEEQVKALLYDAGLPVEV  326 (640)
T ss_pred             EEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCH----HHHHHHHHHHHHCCCCEEE
T ss_conf             899357217999999997588741789458757888999999826847999955870----4899999998754885474


Q ss_pred             ECCCCC
Q ss_conf             501002
Q gi|254781051|r  627 SGQDCE  632 (957)
Q Consensus       627 sGQD~~  632 (957)
                      -|-|-+
T Consensus       327 ~GKd~g  332 (640)
T COG4231         327 HGKDEG  332 (640)
T ss_pred             ECCCCC
T ss_conf             034456


No 57 
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=93.07  E-value=0.49  Score=27.56  Aligned_cols=157  Identities=25%  Similarity=0.286  Sum_probs=86.5

Q ss_pred             EEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCEEEEEEECCCEEEEEECCCCCCCHHCCHHHH
Q ss_conf             998067655268999885379899999855887432234555100-1502688983596189997178773100044553
Q gi|254781051|r  265 MILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKY-HLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVI  343 (957)
Q Consensus       265 iviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKY-HLG~s~~~~~~g~~v~lsL~~NPSHLEaVnPVv~  343 (957)
                      .+=|-+||+=+..|.+++.+               +....+|+=- -+++....  ..-..+.       +.-.--|++.
T Consensus         6 ~CpGCgh~~~~~al~~~~~~---------------~~v~~~~IGC~~~~~~~~~--~~~~~~~-------~mG~~~~~A~   61 (178)
T cd02008           6 LCPGCPHRPSFYALRKAFKK---------------DSIVSGDIGCYTLGALPPL--NAIDTCT-------CMGASIGVAI   61 (178)
T ss_pred             CCCCCCCCHHHHHHHHHHCC---------------CCEEEECCCHHHHHHCCCC--CEEEEEE-------CCCCCHHHHH
T ss_conf             68899985999999974015---------------8679816371014126883--0000111-------3577378997


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCC----CC
Q ss_conf             23677776416665445556544540478886257533346725887645106774436579998416020124----70
Q gi|254781051|r  344 GSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT----NP  419 (957)
Q Consensus       344 G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT----~p  419 (957)
                      |..+|..|                .+|+.+.  ||..|..-|+ .|..+..+-.    -..+.||.||++-=-|    +|
T Consensus        62 G~k~a~p~----------------~~Vv~~~--GDG~~~~~G~-~~l~~av~~~----~~it~iv~nN~~ygmTggQ~sp  118 (178)
T cd02008          62 GMAKASED----------------KKVVAVI--GDSTFFHSGI-LGLINAVYNK----ANITVVILDNRTTAMTGGQPHP  118 (178)
T ss_pred             HHHHHCCC----------------CCEEEEE--CCHHHHHHHH-HHHHHHHHHC----CCEEEEEEECCCCCCCCCCCCC
T ss_conf             78987899----------------8379995--7627766319-9999999829----7959999948530013675589


Q ss_pred             ---HHCCCCCCCCHHH---HHHCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             ---1024677840011---2203405874-267889999999999999997389739986
Q gi|254781051|r  420 ---SSARSCTYASDIS---KSIGIPIFHV-NGDDPEAVIRVVRMAVSFRMKFHKSVVIDI  472 (957)
Q Consensus       420 ---~d~RSs~Y~TDiA---K~i~aPI~HV-N~DdpEav~~~~~lA~~yR~~F~kDVvIDl  472 (957)
                         ....+....-|++   +..++.-+.| +..|++....+.+-|+++    +-=.||+.
T Consensus       119 ~~~~~~~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~~----~G~s~I~v  174 (178)
T cd02008         119 GTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAV----PGVSVIIA  174 (178)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCC----CCCEEEEE
T ss_conf             988877787898798999997799999997844199999999999738----99789999


No 58 
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=92.82  E-value=0.83  Score=25.80  Aligned_cols=19  Identities=11%  Similarity=0.267  Sum_probs=12.4

Q ss_pred             HHHHHHHHHCCCCEEEEECC
Q ss_conf             99999987379107998067
Q gi|254781051|r  251 EEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       251 ~~ii~~a~~~Gv~eiviGMa  270 (957)
                      +.|++.-.+.||+.| +|.|
T Consensus         6 ~~l~~~L~~~Gv~~v-Fg~p   24 (553)
T PRK08199          6 QILVDALRANGVERV-FCVP   24 (553)
T ss_pred             HHHHHHHHHCCCCEE-EEEC
T ss_conf             999999998799989-9968


No 59 
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=92.57  E-value=0.71  Score=26.34  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=10.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             889999999999999997389739986
Q gi|254781051|r  446 DPEAVIRVVRMAVSFRMKFHKSVVIDI  472 (957)
Q Consensus       446 dpEav~~~~~lA~~yR~~F~kDVvIDl  472 (957)
                      .++.+.++...|+.-|    +-|+|+|
T Consensus       141 ~~~~i~~a~~~a~~~~----~Pv~l~i  163 (539)
T TIGR03393       141 ATAEIDRVITTALRER----RPGYLML  163 (539)
T ss_pred             CHHHHHHHHHHHHHCC----CCEEEEE
T ss_conf             1889999999998608----9758980


No 60 
>PRK05858 hypothetical protein; Provisional
Probab=92.35  E-value=0.94  Score=25.38  Aligned_cols=41  Identities=27%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             HCCCCCCCCHHHH--HHHHHHHHHCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf             3343564211478--98889886358315785010022333230279
Q gi|254781051|r  598 IETGKGIDWSMAE--SLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI  642 (957)
Q Consensus       598 ~~~~~~iDW~~AE--~LA~~SLl~eG~~VRlsGQD~~RGTFshRHav  642 (957)
                      +--|.++.|+-|+  +.+++..+  |.||--|-+  .||.|...|-.
T Consensus       210 ii~G~gv~~~~a~~~l~~lae~l--g~Pv~tt~~--gkg~~p~~hpl  252 (543)
T PRK05858        210 IMAGTNVWWGHAEAALLRLAEEL--HIPVLMNGM--ARGVVPADHPL  252 (543)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHH--CCCEEECCC--CCCCCCCCCCH
T ss_conf             99686422333399999999986--997787555--57768887704


No 61 
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.05  E-value=0.55  Score=27.18  Aligned_cols=45  Identities=11%  Similarity=0.125  Sum_probs=18.3

Q ss_pred             HHHHHHCCCCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEE
Q ss_conf             899873343564211--4789888988635831578501002233323027
Q gi|254781051|r  593 NRQKMIETGKGIDWS--MAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHA  641 (957)
Q Consensus       593 ~R~~~~~~~~~iDW~--~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHa  641 (957)
                      +++-.+--|.++.++  ..|..+|+-.+.  .||=-  .-.++|.|...|-
T Consensus       206 A~rPvii~G~g~~~~~a~~~l~~lae~lg--~PV~t--t~~gkg~~p~~hp  252 (574)
T PRK06882        206 AKKPVLFIGGGVITAECSEQLTQFAQRLN--LPVTS--SLMGLGAYPSTDK  252 (574)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCC--CCEEE--HHCCCCCCCCCCC
T ss_conf             79988997874344248999999998609--87131--2035777777776


No 62 
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=91.80  E-value=1.1  Score=24.75  Aligned_cols=109  Identities=22%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECC
Q ss_conf             00445532367777641666544555654454047888625753334672588764510677443657999841602012
Q gi|254781051|r  337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFT  416 (957)
Q Consensus       337 aVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFT  416 (957)
                      ..-|.++|.+-|+-+                ++|++  |-||.+|.=..=--+|+     --|..-=.+|||+||+---.
T Consensus        52 ~a~p~AiG~ala~p~----------------r~Vv~--l~GDGs~lM~~geL~T~-----~~~~~~n~~~vv~nN~~~~s  108 (188)
T cd03371          52 HASQIALGIALARPD----------------RKVVC--IDGDGAALMHMGGLATI-----GGLAPANLIHIVLNNGAHDS  108 (188)
T ss_pred             HHHHHHHHHHHHCCC----------------CEEEE--EECCHHHHHHHHHHHHH-----HHHCCCCEEEEEECCCCCCC
T ss_conf             178999999983999----------------81899--95733888885799999-----97278877999987965223


Q ss_pred             CC--CHHCCCCCCCCHHHHHHCC-CEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             47--0102467784001122034-05874267889999999999999997389739986421
Q gi|254781051|r  417 TN--PSSARSCTYASDISKSIGI-PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       417 T~--p~d~RSs~Y~TDiAK~i~a-PI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      |-  |..+- ..==..+|+..+. ..+.|  +++|..-.+.+-|+    +-..-+|||+.|=
T Consensus       109 ~g~q~t~~~-~~df~~iA~a~G~~~~~~v--~~~~el~~al~~al----~~~gP~~ieV~id  163 (188)
T cd03371         109 VGGQPTVSF-DVSLPAIAKACGYRAVYEV--PSLEELVAALAKAL----AADGPAFIEVKVR  163 (188)
T ss_pred             CCCCCCCCC-CCCHHHHHHHCCCCCEEEE--CCHHHHHHHHHHHH----HCCCCEEEEEEEC
T ss_conf             468766578-9899999998699827997--89999999999998----4899999999978


No 63 
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.44  E-value=0.57  Score=27.02  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             HHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             875214378269724889999999999743534886898
Q gi|254781051|r  750 FLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       750 fLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      |=+++.--...=..+++|+.+=.+|++-+.  .++|-+|
T Consensus       508 f~~lA~a~G~~g~~V~~~~eL~~Al~~A~~--~~~P~lI  544 (572)
T PRK09259        508 YDKMMEAFGGVGYNVTTPDELRHALTEAIA--SGKPTLI  544 (572)
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHHHHHHH--CCCCEEE
T ss_conf             999999689979997999999999999983--8994899


No 64 
>PRK07064 hypothetical protein; Provisional
Probab=91.42  E-value=0.88  Score=25.62  Aligned_cols=20  Identities=20%  Similarity=0.237  Sum_probs=7.9

Q ss_pred             CEEEEECCCHHHHHHHHHHH
Q ss_conf             82697248899999999997
Q gi|254781051|r  758 NMYVANCTSPANYFHILRRQ  777 (957)
Q Consensus       758 N~~V~~~ttpAq~FH~LRRQ  777 (957)
                      ...-.-++||..+=-+|++=
T Consensus       495 G~~g~rV~~~~eL~~al~~A  514 (544)
T PRK07064        495 GLPHWRVTSADDFEAVLREA  514 (544)
T ss_pred             CCEEEEECCHHHHHHHHHHH
T ss_conf             99799979999999999999


No 65 
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.40  E-value=0.58  Score=27.01  Aligned_cols=113  Identities=20%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             CCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             73100044553236777764166654455565445404788862575333467258876451067744365799984160
Q gi|254781051|r  333 SHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQ  412 (957)
Q Consensus       333 SHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQ  412 (957)
                      +.+=.--|..+|-.-|..|                ++|+  .|-||.+|-=-+---+|+--.+||      .+-||+||+
T Consensus       419 GsmG~glpaAiGA~lA~pd----------------r~Vv--~i~GDGsf~m~~qEL~Tavr~~lp------v~ivV~NN~  474 (586)
T PRK06276        419 GTMGFGFPAAIGAKVARPD----------------ANVI--AVTGDGGFLMNSQELATIAEYDIP------VIVVIFDNR  474 (586)
T ss_pred             CCCCCCHHHHHHHHHHCCC----------------CCEE--EEECCHHHHHHHHHHHHHHHHCCC------CEEEEEECC
T ss_conf             7754547999999985899----------------9689--998856875509999999997889------489999787


Q ss_pred             E-ECCCC----CHHCC-------CCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             2-01247----01024-------6778400112203405874267889999999999999997389739986421
Q gi|254781051|r  413 I-GFTTN----PSSAR-------SCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       413 I-GFTT~----p~d~R-------Ss~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      - |..-.    ..+.|       .++==..+|+.++++=++|+  +++..-.|.+=|+    ....-++||++.=
T Consensus       475 ~yg~i~~~q~~~~~~~~~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~A~----~~~gP~lIeV~vD  543 (586)
T PRK06276        475 TLGMVYQWQNLYYGKRQSAVHLGETPDFVKLAESYGVDALRIE--KPGEINEALKTAI----NSGEPYLLDIIID  543 (586)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEEC
T ss_conf             2059999999862886665667999999999997799799979--9999999999998----0899789999956


No 66 
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.25  E-value=1.3  Score=24.35  Aligned_cols=79  Identities=13%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             CCEEEEECCHHHHHHHHHHHHCC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             76899868857899999999769--9868999840148682899999985379983998067853178457899769999
Q gi|254781051|r  837 IRRVILCTGKVYYDLLDNRDMRN--IADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV  914 (957)
Q Consensus       837 v~rvi~csGKvyydL~~~r~~~~--~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~  914 (957)
                      .+.||++-|-.+-...++-+...  -..|.++|+-.|.|||.++|.+.++++..+=++=---++-..| +.|.  -+...
T Consensus       264 Ad~viV~~GS~~~~~~eaVd~lr~~G~kVG~l~vr~~rPFP~~~l~~~l~~~k~V~Vlern~~~g~~g-~l~~--~v~~a  340 (394)
T PRK08366        264 ADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG-ILFT--EAKGA  340 (394)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHH--HHHHH
T ss_conf             77999993751899999999999759866589998848999999999875799899965788988788-1599--99999


Q ss_pred             HHHC
Q ss_conf             8750
Q gi|254781051|r  915 LHSI  918 (957)
Q Consensus       915 l~~~  918 (957)
                      |...
T Consensus       341 l~~~  344 (394)
T PRK08366        341 LYNT  344 (394)
T ss_pred             HHCC
T ss_conf             8568


No 67 
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=91.25  E-value=1.3  Score=24.34  Aligned_cols=20  Identities=15%  Similarity=0.185  Sum_probs=14.9

Q ss_pred             HHHHHHHHHCCCCEEEEECCC
Q ss_conf             999999873791079980676
Q gi|254781051|r  251 EEIIRQGVQQGVDEMILGMAH  271 (957)
Q Consensus       251 ~~ii~~a~~~Gv~eiviGMaH  271 (957)
                      +.|++.-..+||+.|+ |+|=
T Consensus        13 ~~lv~~L~~~GV~~vf-g~PG   32 (548)
T PRK07449         13 AVILEELTRLGVRHVV-IAPG   32 (548)
T ss_pred             HHHHHHHHHCCCCEEE-ECCC
T ss_conf             9999999987998999-8688


No 68 
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=91.08  E-value=1  Score=25.08  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=58.1

Q ss_pred             ECCCCCH-HCCCCC-----CCCHHHHHHCCCE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC----------
Q ss_conf             0124701-024677-----8400112203405-8742678899999999999999973897399864211----------
Q gi|254781051|r  414 GFTTNPS-SARSCT-----YASDISKSIGIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYR----------  476 (957)
Q Consensus       414 GFTT~p~-d~RSs~-----Y~TDiAK~i~aPI-~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YR----------  476 (957)
                      |+||||. -.|+..     +..++++.+.-|| +.|.|||+|..+.-++.-.    ++..+|+|-+=|-.          
T Consensus        23 GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~ls~qv~~~~~~~m~~~a~~l~----~~~~ni~vKIP~t~~gl~ai~~L~   98 (211)
T cd00956          23 GVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLA----SLGGNVVVKIPVTEDGLKAIKKLS   98 (211)
T ss_pred             EECCCHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHH----HHCCCEEEEECCCHHHHHHHHHHH
T ss_conf             5826889998749999999999999854998899997387999999999999----738957999268565999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             25656435422355788888671899899999998644898
Q gi|254781051|r  477 RFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVI  517 (957)
Q Consensus       477 r~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~i  517 (957)
                      +.|..=.=---||-...+...+.-.+....|..++-+.|.-
T Consensus        99 ~~gi~~n~Tav~s~~Qa~~Aa~aga~yvspf~GRi~d~G~d  139 (211)
T cd00956          99 EEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGD  139 (211)
T ss_pred             HCCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCHHHCCCC
T ss_conf             85997677750689999999987997886303407545898


No 69 
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=90.65  E-value=0.93  Score=25.45  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=14.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             78899999999999999973897399864
Q gi|254781051|r  445 DDPEAVIRVVRMAVSFRMKFHKSVVIDIV  473 (957)
Q Consensus       445 DdpEav~~~~~lA~~yR~~F~kDVvIDlv  473 (957)
                      +-|+.+.++.+.|++ +   .+-|+|++=
T Consensus       139 ~~~~~~~~a~~~A~~-~---~~Pv~l~iP  163 (535)
T TIGR03394       139 TAPAEIARVLGSARE-L---SRPVYLEIP  163 (535)
T ss_pred             HHHHHHHHHHHHHHH-C---CCCEEEEEC
T ss_conf             789999999999985-4---798599936


No 70 
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.59  E-value=0.38  Score=28.36  Aligned_cols=37  Identities=11%  Similarity=0.168  Sum_probs=19.6

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             887521437826972488999999999974353488689
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLI  787 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLi  787 (957)
                      .|-.++.--...-.-.++|+++=.+|+|=+..  .+|-+
T Consensus       488 Dfa~lA~a~G~~g~rV~~~~el~~al~~Al~~--~gP~l  524 (574)
T PRK09124        488 DFAAIANAAGITGIRVEKASELDGALQRAFAH--DGPAL  524 (574)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCEE
T ss_conf             99999997799799979999999999999818--99799


No 71 
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.56  E-value=0.56  Score=27.11  Aligned_cols=15  Identities=20%  Similarity=0.204  Sum_probs=5.8

Q ss_pred             EECCCHHHHHHHHHH
Q ss_conf             724889999999999
Q gi|254781051|r  762 ANCTSPANYFHILRR  776 (957)
Q Consensus       762 ~~~ttpAq~FH~LRR  776 (957)
                      +-.+||+++--+|+|
T Consensus       516 ~rV~~~~el~~Al~~  530 (572)
T PRK08979        516 MTISDPAELESGLAK  530 (572)
T ss_pred             EEECCHHHHHHHHHH
T ss_conf             997999999999999


No 72 
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.44  E-value=1.5  Score=23.82  Aligned_cols=14  Identities=21%  Similarity=0.183  Sum_probs=5.6

Q ss_pred             HHHHHHHHHCCCCE
Q ss_conf             99999987379107
Q gi|254781051|r  251 EEIIRQGVQQGVDE  264 (957)
Q Consensus       251 ~~ii~~a~~~Gv~e  264 (957)
                      +.|++.-.+.||+.
T Consensus        11 ~~l~~~L~~~GV~~   24 (568)
T PRK08327         11 ALLLELLKELGVDY   24 (568)
T ss_pred             HHHHHHHHHCCCCE
T ss_conf             99999999879999


No 73 
>PRK08617 acetolactate synthase; Reviewed
Probab=90.38  E-value=0.57  Score=27.05  Aligned_cols=15  Identities=13%  Similarity=0.228  Sum_probs=6.7

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             488999999999974
Q gi|254781051|r  764 CTSPANYFHILRRQI  778 (957)
Q Consensus       764 ~ttpAq~FH~LRRQ~  778 (957)
                      +..|...++.|++.+
T Consensus       364 ~~~p~~~~~~l~~~l  378 (552)
T PRK08617        364 LLHPLRIIRALQDIV  378 (552)
T ss_pred             CCCHHHHHHHHHHHC
T ss_conf             729999999999856


No 74 
>TIGR00553 pabB para-aminobenzoate synthase, component I; InterPro: IPR005802   Para-aminobenzoate synthase component I (pabB) is closely related to anthranilate synthase component I (trpE). The apparent orthologs of pabB in Aquifex aeolicus and Helicobacter pylori score well below most TrpE proteins because of a different architecture, in which the less strongly conserved N-terminal domain is absent. The noise cut off is set to exclude most examples of TrpE.; GO: 0009396 folic acid and derivative biosynthetic process.
Probab=90.37  E-value=0.081  Score=33.43  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=30.3

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHH----HHCCCEEE
Q ss_conf             171572566578777789999999998----40643027
Q gi|254781051|r  145 YDRKICMKGVLGLESATIPEIVDVLSH----LYCSNIGV  179 (957)
Q Consensus       145 Ld~~f~~~~~~g~~~~tL~eIi~~L~~----tYCgsIGv  179 (957)
                      |.--|+.|.+.|.++.--.|||+.||+    +|||+||+
T Consensus       268 ~~AlFP~GSiTGAPK~RAMeII~elE~~~RG~YcGaiG~  306 (368)
T TIGR00553       268 FRALFPGGSITGAPKLRAMEIIKELEKQPRGVYCGAIGY  306 (368)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             985178887358146899999998636888951001330


No 75 
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.34  E-value=0.67  Score=26.49  Aligned_cols=38  Identities=16%  Similarity=0.424  Sum_probs=24.0

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             8875214378269724889999999999743534886898
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      .|-.|+.--...=.-.++|+++--+|+|=+  .-.+|-+|
T Consensus       511 Df~~lA~a~G~~g~rV~~~~el~~Al~~Al--~~~gP~lI  548 (594)
T PRK09107        511 DFVKLAEAYGAVGIRCEKPGDLDDAIQEMI--DVDKPVIF  548 (594)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHH--HCCCCEEE
T ss_conf             999999977997999799999999999998--28998899


No 76 
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.25  E-value=1  Score=25.13  Aligned_cols=45  Identities=22%  Similarity=0.385  Sum_probs=17.9

Q ss_pred             HHHHHHCCCCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEE
Q ss_conf             899873343564211--4789888988635831578501002233323027
Q gi|254781051|r  593 NRQKMIETGKGIDWS--MAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHA  641 (957)
Q Consensus       593 ~R~~~~~~~~~iDW~--~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHa  641 (957)
                      +++-.+--|.++.|.  ..|..+++-.+.  .||=-|  =..||+|...|-
T Consensus       207 AkrPvIl~G~G~~~~~a~~~l~~lae~l~--~Pv~tT--~~gkg~~p~~hp  253 (572)
T PRK06456        207 AERPIILVGTGVVWSNATPEVLELAELLH--IPIVST--FPGKSAIPHDHP  253 (572)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHC--CCCEEC--CCCCCCCCCCCC
T ss_conf             89988999558241436499999999839--981220--145555345786


No 77 
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway.  Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=90.23  E-value=1.6  Score=23.70  Aligned_cols=104  Identities=11%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH---HCCCCCCCCCEEEEEECCCE
Q ss_conf             004455323677776416665445556544540478886257533346725887645---10677443657999841602
Q gi|254781051|r  337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGL---SGLSGYTVAGNIHLIINNQI  413 (957)
Q Consensus       337 aVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~l---s~l~gY~tGGTiHiVvNNQI  413 (957)
                      ...|+++|.+-|+.                 ++|++  |-||++|-        |+|   +-+..|.-=--+|||+||+.
T Consensus        46 ~~~~~alG~al~~p-----------------~kVi~--idGDGs~l--------M~lg~LaTi~~~~~~nl~~ivlnN~~   98 (157)
T cd02001          46 LAGSIGLGLALGLS-----------------RKVIV--VDGDGSLL--------MNPGVLLTAGEFTPLNLILVVLDNRA   98 (157)
T ss_pred             HHHHHHHHHHHCCC-----------------CCEEE--EECCHHHH--------HCCCHHHHHHHCCCCCEEEEEEECCC
T ss_conf             28899999985389-----------------96899--95755887--------52461999986389887999997975


Q ss_pred             ECCC-C-CHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             0124-7-01024677840011220340587426788999999999999999738973998642
Q gi|254781051|r  414 GFTT-N-PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       414 GFTT-~-p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      ==.| . |..+ +..==..|||..+...++|  +++|....+.+-++    .-..-++|++.+
T Consensus        99 ~~s~GgQ~t~~-~~~df~~iA~a~G~~~~~v--~~~~el~~al~~~l----~~~GP~fIeV~I  154 (157)
T cd02001          99 YGSTGGQPTPS-SNVNLEAWAAACGYLVLSA--PLLGGLGSEFAGLL----ATTGPTLLHAPI  154 (157)
T ss_pred             CCCCCCCCCCC-CCCCHHHHHHHCCCCEEEE--CCHHHHHHHHHHHH----CCCCCEEEEEEE
T ss_conf             32467856754-4669999999869857995--89999999999998----499998999995


No 78 
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.69  E-value=0.99  Score=25.24  Aligned_cols=71  Identities=20%  Similarity=0.262  Sum_probs=33.9

Q ss_pred             HHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             01122034058742678899999999999999973897399864211256564354223557888886718998999999
Q gi|254781051|r  430 DISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYAD  509 (957)
Q Consensus       430 DiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~  509 (957)
                      .+|+.++++=+.|  ++|+....|.+=|++-    .+-++||++.=    -||...|..+.-..-+       =..+|.-
T Consensus       491 ~lA~a~G~~g~rV--~~~~el~~al~~Al~~----~gP~lIeV~vD----p~~~~~p~~~~~~~~~-------~~~~~~~  553 (578)
T PRK06546        491 AIAAALGIHAVRV--EDPADIRGALKEAFAH----DGPALVDVVTD----PNALSIPPKITGEQVM-------GFALAAS  553 (578)
T ss_pred             HHHHHCCCEEEEE--CCHHHHHHHHHHHHHC----CCCEEEEEEEC----CCCCCCCCCCCHHHHH-------HHHHHHH
T ss_conf             9999779989997--9999999999999818----99689999838----9987889988889999-------9999999


Q ss_pred             HHHHCCCC
Q ss_conf             98644898
Q gi|254781051|r  510 SLMKNQVI  517 (957)
Q Consensus       510 ~Li~~g~i  517 (957)
                      |++-.|-.
T Consensus       554 ~~~~~~~~  561 (578)
T PRK06546        554 KIVLNGGV  561 (578)
T ss_pred             HHHHCCCC
T ss_conf             99975872


No 79 
>PRK01362 putative translaldolase; Provisional
Probab=89.56  E-value=1.8  Score=23.34  Aligned_cols=58  Identities=31%  Similarity=0.332  Sum_probs=39.8

Q ss_pred             ECCCCCHH-CCCCCCC----CHHHHHHCCCE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             01247010-2467784----00112203405-874267889999999999999997389739986421
Q gi|254781051|r  414 GFTTNPSS-ARSCTYA----SDISKSIGIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       414 GFTT~p~d-~RSs~Y~----TDiAK~i~aPI-~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      |+||||.- .|+..=+    .+|.+.++-|| +.|.|||++..+.-++--   + +++++|+|-+=|-
T Consensus        24 GvTTNPsll~k~g~~~~~~~~~i~~~~~~~is~ev~~~~~~~m~~qA~~l---~-~~~~nv~VKIP~t   87 (214)
T PRK01362         24 GVTTNPSLIAKEGRDFKEVIKEICSIVDGPVSAEVIALDAEGMIKEGREL---A-KIAPNVVVKIPMT   87 (214)
T ss_pred             EEECCHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH---H-HHCCCEEEECCCC
T ss_conf             69589899987599989999999873179757996364199999999999---9-8487769981896


No 80 
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.27  E-value=1.2  Score=24.53  Aligned_cols=46  Identities=15%  Similarity=0.205  Sum_probs=19.8

Q ss_pred             HHHHHHCCCCCCCCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEE
Q ss_conf             899873343564211--47898889886358315785010022333230279
Q gi|254781051|r  593 NRQKMIETGKGIDWS--MAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI  642 (957)
Q Consensus       593 ~R~~~~~~~~~iDW~--~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHav  642 (957)
                      +++-.+--|.++.++  ..|+++|+-.+  |.||=-|  =.+||.|...|.-
T Consensus       214 AkrPvil~G~Gv~~~~a~~~l~~lae~~--~~PV~tt--~~gkg~~~~~hpl  261 (570)
T PRK06725        214 AKRPLLYIGGGVIHSGGSDELIKFAREN--RIPVVST--LMGLGAYPPGDPL  261 (570)
T ss_pred             CCCCEEECCCCCCCCCHHHHHHHHHHHH--CCCEEEC--CCCCCCCCCCCCC
T ss_conf             6898798367600464899999999986--9989942--4568889999855


No 81 
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=88.72  E-value=2  Score=22.91  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=55.7

Q ss_pred             HHCCEEEEECCHHHHHHHHHHHH---CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             45768998688578999999997---699868999840148682899999985379983998067853178457899769
Q gi|254781051|r  835 SHIRRVILCTGKVYYDLLDNRDM---RNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYL  911 (957)
Q Consensus       835 ~~v~rvi~csGKvyydL~~~r~~---~~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl  911 (957)
                      +..+.||+|-|-.+=...++-+.   +|. .|.++|+--+-|||.++|.+.|+   +++-|=|=|--+.-|+..-+..-+
T Consensus       266 eDAe~viV~~GS~~~~~~~AVd~lR~~G~-KVGlir~r~~rPFP~~~l~~al~---~~K~V~Vldr~~~~g~~g~l~~~v  341 (407)
T PRK09622        266 EDAEVAIFALGTTVESAIVAAKEMRKKGI-KAGVATIRVLRPFPYERLGQALK---NLKALAILDRSSPAGAMGALFNEV  341 (407)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEEEEECCCCHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHH
T ss_conf             98779999807868999999999997498-67589999858999999999875---799899997889988877379999


Q ss_pred             HHHHHHCC
Q ss_conf             99987505
Q gi|254781051|r  912 EKVLHSIG  919 (957)
Q Consensus       912 ~~~l~~~~  919 (957)
                      ...|....
T Consensus       342 ~~al~~~~  349 (407)
T PRK09622        342 TSAVYQTQ  349 (407)
T ss_pred             HHHHHHCC
T ss_conf             99998527


No 82 
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.72  E-value=1.8  Score=23.32  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=10.0

Q ss_pred             HHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             5214378269724889999999999
Q gi|254781051|r  752 QMCAENNMYVANCTSPANYFHILRR  776 (957)
Q Consensus       752 Ql~a~~N~~V~~~ttpAq~FH~LRR  776 (957)
                      .++.--...=..++||+.+=.+|.+
T Consensus       499 ~lA~a~G~~g~~V~~~~eL~~al~~  523 (554)
T TIGR03254       499 KMMKAFGGVGYNVTTPDELKAALNE  523 (554)
T ss_pred             HHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             9998789989997999999999999


No 83 
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=87.58  E-value=2.3  Score=22.41  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=55.3

Q ss_pred             HCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             5768998688578999999997699--86899984014868289999998537998399806785317845789976999
Q gi|254781051|r  836 HIRRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEK  913 (957)
Q Consensus       836 ~v~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~  913 (957)
                      ..+.||+|-|-.+=...++.+....  ..|-++|+--+.|||.++|++.+++   ++-|=|=|--...|++-=+..-+..
T Consensus       261 DAe~viV~~GS~~~~~k~AVd~lR~~G~KVGllr~r~~rPFP~e~l~~~~k~---~k~V~Vldr~~s~g~~g~l~~ev~~  337 (395)
T PRK08367        261 DAEIIFVTMGSLAGTLKEWVDKKREEGYKVGAAKITVYRPFPVEEIRELAKK---AKVLAFLEKNITFGLYGAVFQDASA  337 (395)
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHCC---CCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             9889999817428999999999997498576899888589999999998657---9889998688998889815999999


Q ss_pred             HHHHC
Q ss_conf             98750
Q gi|254781051|r  914 VLHSI  918 (957)
Q Consensus       914 ~l~~~  918 (957)
                      .|...
T Consensus       338 ~l~~~  342 (395)
T PRK08367        338 ALVNE  342 (395)
T ss_pred             HHHCC
T ss_conf             98478


No 84 
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=87.44  E-value=2.4  Score=22.35  Aligned_cols=160  Identities=17%  Similarity=0.237  Sum_probs=91.4

Q ss_pred             EECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE--ECCCEEEEEECCCCCCCHHCCHHHHH
Q ss_conf             8067655268999885379899999855887432234555100150268898--35961899971787731000445532
Q gi|254781051|r  267 LGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQ--ICGKDVKLLLQSNPSHLEFVDPVVIG  344 (957)
Q Consensus       267 iGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~--~~g~~v~lsL~~NPSHLEaVnPVv~G  344 (957)
                      -|-+||+=++.|...+.+         .|..+++....+|    .|.++...  .+-..+|..       ....-|++.|
T Consensus         3 pGCgh~~~~~~~~~a~~~---------l~i~~~~~v~vs~----iGC~~~~~~~~~~~~~~~~-------hG~a~~~A~G   62 (193)
T cd03375           3 PGCGDGSILKALAKALAE---------LGIDPEKVVVVSG----IGCSSRLPYYFNTYGFHTL-------HGRALAVATG   62 (193)
T ss_pred             CCCCCHHHHHHHHHHHHH---------HCCCCCCEEEEEC----CCCCCCCCCHHHCCCCCHH-------HCCCHHHHHH
T ss_conf             988878999999999998---------1899667899958----7746766461115865202-------1160888867


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-ECCC------
Q ss_conf             367777641666544555654454047888625753334672588764510677443657999841602-0124------
Q gi|254781051|r  345 SVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GFTT------  417 (957)
Q Consensus       345 ~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GFTT------  417 (957)
                      ..+|+.|                .+|  |.+-||..|..=|+- +.+++.    ++--.-+-||+||++ |-|-      
T Consensus        63 ~k~a~p~----------------~~V--va~~GDG~~~~iG~~-~l~~A~----~rn~~i~~iv~DN~~ygmTGgQ~spt  119 (193)
T cd03375          63 VKLANPD----------------LTV--IVVSGDGDLAAIGGN-HFIHAA----RRNIDITVIVHNNQIYGLTKGQASPT  119 (193)
T ss_pred             HHHHCCC----------------CEE--EEEEECCHHHHCCHH-HHHHHH----HHCCCEEEEEECCCCEECCCCCCCCC
T ss_conf             9875999----------------739--999706557645618-899999----80997499998584044236834889


Q ss_pred             CCHHC--CCCCC--------CCHHHHHHCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             70102--46778--------40011220340-58742678899999999999999973897399864
Q gi|254781051|r  418 NPSSA--RSCTY--------ASDISKSIGIP-IFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIV  473 (957)
Q Consensus       418 ~p~d~--RSs~Y--------~TDiAK~i~aP-I~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv  473 (957)
                      .|...  .+|+|        .-.|++..++| |--++..||.....+.+-|+++    +-=-+|+..
T Consensus       120 T~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~~~~~~~l~~~ik~Al~~----~G~s~I~v~  182 (193)
T cd03375         120 TPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQH----KGFSFVEVL  182 (193)
T ss_pred             CCCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC----CCCEEEEEE
T ss_conf             889855413677876578899999987599879996579999999999999808----998899998


No 85 
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=87.18  E-value=2  Score=22.89  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=11.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf             788999999999999999738-9739986
Q gi|254781051|r  445 DDPEAVIRVVRMAVSFRMKFH-KSVVIDI  472 (957)
Q Consensus       445 DdpEav~~~~~lA~~yR~~F~-kDVvIDl  472 (957)
                      ++|+.+..+.+-|+..-..-+ .-|+|+|
T Consensus       129 ~~~~~i~~~l~~A~~~A~~g~~GPV~l~i  157 (548)
T PRK08978        129 QSLEELPRIMAEAFEIASSGRPGPVLVDI  157 (548)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             89999899999999998538997569865


No 86 
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=86.98  E-value=2.5  Score=22.17  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999999999987379107998067
Q gi|254781051|r  246 IIPAIEEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       246 lIP~L~~ii~~a~~~Gv~eiviGMa  270 (957)
                      |+-+=|.|++.-.+.||+. |+|++
T Consensus        15 ~~tGa~~l~~~L~~~GV~~-vFGvp   38 (571)
T PRK07710         15 LATGAQLLLEALEKEGVEV-IFGYP   38 (571)
T ss_pred             CCCHHHHHHHHHHHCCCCE-EEECC
T ss_conf             4749999999999879999-99847


No 87 
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=85.53  E-value=2.2  Score=22.57  Aligned_cols=58  Identities=24%  Similarity=0.372  Sum_probs=40.0

Q ss_pred             ECCCCCHH-CCCCC-----CCCHHHHHHCC--CE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             01247010-24677-----84001122034--05-87426788999999999999999738973998642
Q gi|254781051|r  414 GFTTNPSS-ARSCT-----YASDISKSIGI--PI-FHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       414 GFTT~p~d-~RSs~-----Y~TDiAK~i~a--PI-~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      |+||||.- .|+..     +..+|++.+.-  || +-|-|||+|..+.-+   .+++..++++|+|-+=+
T Consensus        24 GvTTNPsll~k~g~~d~~~~l~~i~~~i~~~~~ls~qv~~~d~~~mi~~a---~~i~~~~~~nv~VKIP~   90 (222)
T PRK12656         24 GVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVAQDYEGILKDA---AEIRRQCGDDVYIKVPV   90 (222)
T ss_pred             EECCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHH---HHHHHHCCCCEEEECCC
T ss_conf             57589999987699888999999999829998889997639899999999---99998557678996688


No 88 
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.41  E-value=3  Score=21.62  Aligned_cols=62  Identities=11%  Similarity=0.189  Sum_probs=35.9

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCE---EEECCCH-HHCCCCCCCCHHHHCCCC
Q ss_conf             88752143782697248899999999997435348868---9856602-210801268878937998
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPL---IMMAPKS-LLRHKRVVSSLSDMTCGS  811 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPL---iv~tPKs-LLR~~~a~S~l~d~~~g~  811 (957)
                      .|-.++.--...-.-.+||+++--+|++=+. .--+|.   |+.-|+. ++=.=.+-++++||.-|+
T Consensus       519 df~~lA~a~G~~g~~V~~~~eL~~al~~Al~-~~~~p~lidV~iDp~~~~~P~~~~g~~~~~~~~~~  584 (587)
T PRK06965        519 DFVKLAEAYGHVGMRIEKTSDVEPALKEALR-LKDRTVFLDFQTDPTENVWPMVQAGKGITEMLLGS  584 (587)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCC
T ss_conf             9999999779989997999999999999986-48980999999789888789799999875623687


No 89 
>PRK12474 hypothetical protein; Provisional
Probab=84.75  E-value=3.2  Score=21.40  Aligned_cols=19  Identities=11%  Similarity=0.261  Sum_probs=11.9

Q ss_pred             HHHHHHHHHCCCCEEEEECC
Q ss_conf             99999987379107998067
Q gi|254781051|r  251 EEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       251 ~~ii~~a~~~Gv~eiviGMa  270 (957)
                      |.+++.-.+.||+. |+|++
T Consensus         9 ~~lv~~L~~~GV~~-vFGip   27 (518)
T PRK12474          9 DSVVDTLLNCGVEV-CFANP   27 (518)
T ss_pred             HHHHHHHHHCCCCE-EEECC
T ss_conf             99999999879999-99898


No 90 
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=84.15  E-value=2.2  Score=22.62  Aligned_cols=38  Identities=13%  Similarity=0.224  Sum_probs=24.6

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             8875214378269724889999999999743534886898
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      .|-+++.--...=.-.+||+++--+|++=+.  -.+|-+|
T Consensus       509 Df~~lA~a~G~~g~rV~~~~el~~Al~~Al~--~~gP~lI  546 (588)
T CHL00099        509 DFVKLAEAFGIKGITIKSRKDLKSKLQRALD--YDGPVLV  546 (588)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHC--CCCCEEE
T ss_conf             9999999779989997999999999999982--9997899


No 91 
>KOG1185 consensus
Probab=84.02  E-value=3.4  Score=21.18  Aligned_cols=108  Identities=15%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             HHHHHCCCCCCCCCCEEECCCCCCCCCCCHHH-HHHHHHHHHHH---HCCCCCCEEECCCCCCCC---CCCCCCCC----
Q ss_conf             34320221138653111000024424541022-56554202576---233368135436888888---87656440----
Q gi|254781051|r  678 LGFEYGYSLNNLNALTIWEAQFGDFANGAQVI-LDQFITAGEQK---WLCTSNLVCLLPHGYEGQ---GPEHSSAR----  746 (957)
Q Consensus       678 lgFEyGys~~~p~~L~iWEAQFGDF~NgAQvi-iDqfiss~e~K---W~~~sglvllLPHGyeGq---GPEHSSaR----  746 (957)
                      +||-.+-.+..|+..|+  .=+||=|-|=--| +|+|+-.--.-   =.--||+-=|.+||++--   -|++-+.-    
T Consensus       436 ~Gfalaaa~~~P~~~V~--~veGDsaFGfSaME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~  513 (571)
T KOG1185         436 LGFALAAALAAPDRKVV--CVEGDSAFGFSAMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALL  513 (571)
T ss_pred             HHHHHHHHHHCCCCEEE--EEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf             15777877627997389--9964765571056588888716876999962886346676448888516855689840124


Q ss_pred             -HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             -578875214378269724889999999999743534886898
Q gi|254781051|r  747 -LERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       747 -lERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                       =-||=|+|----+.=-.++|+-.+-|.|+.+ .+.-++|-||
T Consensus       514 ~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a-~q~~~~psvI  555 (571)
T KOG1185         514 ANTRYDKVAKAFGGKGYFVSTVEELLAALQQA-CQDTDKPSVI  555 (571)
T ss_pred             CCCCHHHHHHHCCCCCEEECCHHHHHHHHHHH-HHCCCCCEEE
T ss_conf             43569999987188863647899999999999-8547997689


No 92 
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=83.66  E-value=3.5  Score=21.08  Aligned_cols=72  Identities=8%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE---ECCCHHH-CCCCCCCCHHHHCCCCCEEECCCCCC
Q ss_conf             8875214378269724889999999999743534886898---5660221-08012688789379986035157764
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM---MAPKSLL-RHKRVVSSLSDMTCGSVFQAVLSDDA  821 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv---~tPKsLL-R~~~a~S~l~d~~~g~~F~~vi~d~~  821 (957)
                      -|-.++.--...-.-+++|.++=.+|++=+..+ -+|-+|   ..|.-+. =.-..=.+++||--....+|..+|..
T Consensus       533 Df~~lA~a~G~~g~rv~~~~el~~al~~Al~~~-d~P~lIdv~vdp~~~~~P~~~~g~~~~~~~~~~~~~~~~~~~~  608 (612)
T PRK07789        533 DFVKLAEALGCVGLRCEREEDVDAVIEKARAIN-DRPVVIDFVVGADAMVWPMVAAGTSNDEIQYARGIRPLFDDEE  608 (612)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHH
T ss_conf             999999977987999799999999999998559-9958999998988770698899989899704768899878422


No 93 
>PRK12376 putative translaldolase; Provisional
Probab=82.54  E-value=2.5  Score=22.21  Aligned_cols=59  Identities=31%  Similarity=0.471  Sum_probs=41.2

Q ss_pred             EECCCCCHH-CCCCC-----CCCHHHHHH-CCCE-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf             201247010-24677-----840011220-3405-874267889999999999999997389739986421
Q gi|254781051|r  413 IGFTTNPSS-ARSCT-----YASDISKSI-GIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY  475 (957)
Q Consensus       413 IGFTT~p~d-~RSs~-----Y~TDiAK~i-~aPI-~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~Y  475 (957)
                      =|+||||.- .|+..     ++.++.+.+ +.|| +-|-|||+|..+.-++.-   + +++++|+|-+=|=
T Consensus        30 ~GVTTNPsLl~k~G~~d~~~~~~~i~~~i~~~~is~EV~~~~~~~mi~qA~~l---~-~~~~nv~VKIP~t   96 (238)
T PRK12376         30 KGFTTNPSLMKKAGITDYKAFAKEVLAEIPDYPISFEVFADDLETMEKEAEIL---A-SLGENVYVKIPIT   96 (238)
T ss_pred             CEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---H-HHCCCEEEEECCC
T ss_conf             57907889998669997899999999638998779999568778899999999---9-7589779997785


No 94 
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.51  E-value=3.8  Score=20.78  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=7.3

Q ss_pred             HHHHHHHHHCCCCEEEEECC
Q ss_conf             99999987379107998067
Q gi|254781051|r  251 EEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       251 ~~ii~~a~~~Gv~eiviGMa  270 (957)
                      |.|++.-.+.||+. |+|.+
T Consensus         8 ~~l~~~L~~~GV~~-vFgip   26 (574)
T PRK06466          8 EMLVRALRDEGVEY-IYGYP   26 (574)
T ss_pred             HHHHHHHHHCCCCE-EEECC
T ss_conf             99999999879999-99778


No 95 
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=82.45  E-value=2.8  Score=21.81  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             CHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCC------CCCCCEEEECCC---HHHCCCCCCCCHHHHCCCCCEEEC
Q ss_conf             05788752143782697248899999999997435------348868985660---221080126887893799860351
Q gi|254781051|r  746 RLERFLQMCAENNMYVANCTSPANYFHILRRQIYD------RSSRPLIMMAPK---SLLRHKRVVSSLSDMTCGSVFQAV  816 (957)
Q Consensus       746 RlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r------~~rkPLiv~tPK---sLLR~~~a~S~l~d~~~g~~F~~v  816 (957)
                      .|-+=+.-.+.++..|+-.|||+=|+++.-+...+      .|-|-.-++..+   -=...|.-.  .+++ .| .|..|
T Consensus        14 ~La~~~~~~~~~~~~IA~lS~PSly~~l~~~~~~~~~v~LfEyD~RF~~~~~~FvfYDyn~P~~l--p~~l-~~-~fD~v   89 (161)
T pfam10237        14 KLAKALLEGADEGTVIACVSAPSVYAALKERPIPTKNVYLLEYDKRFAVYGGEFVFYDYNKPLEL--PEQL-KG-KFDRV   89 (161)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECHHHHHCCCCEEECCCCCCCCC--HHHH-HC-CCCEE
T ss_conf             99999997368998799985868999998434887737996543058767994167778980108--7997-08-67889


Q ss_pred             CCCCCCCCCCCC----C---CCCCHHHCCEEEEECCHHHHHHHHHH
Q ss_conf             577643344454----4---45795457689986885789999999
Q gi|254781051|r  817 LSDDAEYHGKTS----V---KLKEDSHIRRVILCTGKVYYDLLDNR  855 (957)
Q Consensus       817 i~d~~~~~~~~~----~---~~~~~~~v~rvi~csGKvyydL~~~r  855 (957)
                      |-||....-.--    .   .+..+  --|+|+|||.+--+++.+.
T Consensus        90 i~DPPFLseec~~K~a~t~~~L~k~--~~kli~~Tg~~~~~~~~kl  133 (161)
T pfam10237        90 IADPPFLSEECLTKTAITIKLLLKP--DSKLLLCTGERMEDLAAKL  133 (161)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHCC--CCEEEEECHHHHHHHHHHH
T ss_conf             9899998999999999999998089--9879993489999999997


No 96 
>PRK08611 pyruvate oxidase; Provisional
Probab=81.83  E-value=4.1  Score=20.58  Aligned_cols=38  Identities=8%  Similarity=0.135  Sum_probs=22.9

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             8875214378269724889999999999743534886898
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      +|-+++.--...=...+||..+-.+|++=+.+  .+|-+|
T Consensus       488 Df~~~A~a~G~~g~rV~~~~el~~Al~~Al~~--~~P~lI  525 (576)
T PRK08611        488 DYAKFAEACGGKGYTVKSADELDPAFEEALAQ--DKPVII  525 (576)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCEEE
T ss_conf             99999997799799979999999999999828--997999


No 97 
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=80.95  E-value=3.5  Score=21.12  Aligned_cols=57  Identities=26%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             ECCCCCH-HCCCCCCCC----HHHHHH--CCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             0124701-024677840----011220--34058-7426788999999999999999738973998642
Q gi|254781051|r  414 GFTTNPS-SARSCTYAS----DISKSI--GIPIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       414 GFTT~p~-d~RSs~Y~T----DiAK~i--~aPI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      |+||||. -.|+..-+.    ++++.+  +.|++ -|-|+|+|..+.-++.-   +. ..++|||-+=+
T Consensus        24 GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~l~~ev~~~d~~~m~~~a~~l---~~-~~~~ivVKIP~   88 (220)
T PRK12655         24 GVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRL---RN-AIPGIVVKIPV   88 (220)
T ss_pred             EECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH---HH-HCCCEEEECCC
T ss_conf             5828999998659987999999999828999789999559999999999999---97-47873998688


No 98 
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=80.47  E-value=4.5  Score=20.26  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=67.7

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHC---CCCCCCCCEEEEEECCCE
Q ss_conf             00445532367777641666544555654454047888625753334672588764510---677443657999841602
Q gi|254781051|r  337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSG---LSGYTVAGNIHLIINNQI  413 (957)
Q Consensus       337 aVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~---l~gY~tGGTiHiVvNNQI  413 (957)
                      ...|+++|.+-|+                + ++|++  |-||++|-        |+|..   +-.|..---+|||.||+.
T Consensus        46 ~~~p~aiGaa~a~----------------p-~kVi~--i~GDGs~l--------M~~geL~Ti~~~~~~n~~~ivlnN~~   98 (179)
T cd03372          46 LASSIGLGLALAQ----------------P-RKVIV--IDGDGSLL--------MNLGALATIAAEKPKNLIIVVLDNGA   98 (179)
T ss_pred             HHHHHHHHHHHCC----------------C-CCEEE--EECCHHHH--------HHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             0889999998657----------------9-96899--96780465--------43669999997268978999983887


Q ss_pred             ECCCCCHHCCCCCCCCH---HHHHHCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             01247010246778400---1122034058-7426788999999999999999738973998642112565643542235
Q gi|254781051|r  414 GFTTNPSSARSCTYASD---ISKSIGIPIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFT  489 (957)
Q Consensus       414 GFTT~p~d~RSs~Y~TD---iAK~i~aPI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fT  489 (957)
                      ==.|--..+- +..++|   ||+..+.+-+ -|  +++|..-.+.+.|      -..-++|++.|=+    .|.+-|+.+
T Consensus        99 ~g~~g~q~t~-~~~~~Df~~iA~a~G~~~~~~v--~~~e~l~~~l~~~------~~gP~~iev~i~~----~~~~~p~~p  165 (179)
T cd03372          99 YGSTGNQPTH-AGKKTDLEAVAKACGLDNVATV--ASEEAFEKAVEQA------LDGPSFIHVKIKP----GNTDVPNIP  165 (179)
T ss_pred             CCCCCCCCCC-CCCCCCHHHHHHHCCCCEEEEE--CCHHHHHHHHHHH------CCCCEEEEEEECC----CCCCCCCCC
T ss_conf             5541350366-6789899999998799739998--9999999999984------7999999999879----998889999


No 99 
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=78.52  E-value=5.1  Score=19.83  Aligned_cols=62  Identities=16%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCCCH--HHHHHHHHHHCCCCEEEEE---------CCCC--CCCCCHHHHHHHHH
Q ss_conf             578999999997699868999840148682--8999999853799839980---------6785--31784578997699
Q gi|254781051|r  846 KVYYDLLDNRDMRNIADIYLLRIEQLYPFP--EDYLIKVLSRFVQAEIVWC---------QEEP--QNMGAWTFIEPYLE  912 (957)
Q Consensus       846 KvyydL~~~r~~~~~~~vaivRiEqLyPfP--~~~l~~~l~~y~~~e~vW~---------QEEp--~N~GaW~~v~~rl~  912 (957)
                      +-||-|.++.++-.   ||     .||-=|  .++|.+......+..|-+.         .-.|  .-.|+|.+.-.++-
T Consensus      1021 r~lfKLMAYKDEYE---VA-----RL~td~~F~~~l~~qFeg~~kl~fhLAPPlL~r~d~~GrprK~~fG~Wm~~~frlL 1092 (1186)
T PRK13029       1021 RNLFKLMAYKDEYE---VA-----RLYTDPAFLDQLAAEFEGEPRLSFHLAPPLFARRDERGHLVKVRYGPWMLPAFRVL 1092 (1186)
T ss_pred             HHHHHHHHHHHHHH---HH-----HHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHH
T ss_conf             99986841633989---98-----84188899999998649995179985897557889999880300770699999999


Q ss_pred             HHH
Q ss_conf             998
Q gi|254781051|r  913 KVL  915 (957)
Q Consensus       913 ~~l  915 (957)
                      .-+
T Consensus      1093 A~l 1095 (1186)
T PRK13029       1093 ARL 1095 (1186)
T ss_pred             HHC
T ss_conf             747


No 100
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding 
Probab=78.37  E-value=5.2  Score=19.80  Aligned_cols=106  Identities=20%  Similarity=0.345  Sum_probs=61.2

Q ss_pred             CEEEEEEEECCCCCCCCCHHHHHHH-HHCCCC-CCCCCEEEEE-ECCCEECCCCCHHCCCCCCCC----HHHHHHC----
Q ss_conf             4047888625753334672588764-510677-4436579998-416020124701024677840----0112203----
Q gi|254781051|r  368 SRVLPLIIHGDAAFAGQGIVSETFG-LSGLSG-YTVAGNIHLI-INNQIGFTTNPSSARSCTYAS----DISKSIG----  436 (957)
Q Consensus       368 ~~vlpiliHGDAAfaGQGVV~Etl~-ls~l~g-Y~tGGTiHiV-vNNQIGFTT~p~d~RSs~Y~T----DiAK~i~----  436 (957)
                      +-.+-=-||||= ..|+.|+.+.++ |.+++. =..-|||=+| +=|-+||...-....++||..    |+-+++-    
T Consensus        29 ~vyiqAalHGDE-l~G~~v~~~L~~~L~~~e~~~~L~GtviiVPv~Np~G~~q~~~~~~~GRf~~~d~~dlNR~FP~~~~  107 (359)
T cd06250          29 KVYIQASLHADE-LPGMLVLHHLIELLKKLEAEGRILGEITLVPVANPIGLNQRLGGFHLGRFDLASGTNFNRDFPDLAD  107 (359)
T ss_pred             EEEEECCCCHHC-CCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             799980445100-2169999999999761322366723799993648788765423566666678998834657887532


Q ss_pred             ---CCEEEECCCCHHHHHHHHHHHHH--------------------HHHHHCCCEEEEEEE
Q ss_conf             ---40587426788999999999999--------------------999738973998642
Q gi|254781051|r  437 ---IPIFHVNGDDPEAVIRVVRMAVS--------------------FRMKFHKSVVIDIVC  474 (957)
Q Consensus       437 ---aPI~HVN~DdpEav~~~~~lA~~--------------------yR~~F~kDVvIDlv~  474 (957)
                         .=+=..=++|++.-+...+-++.                    .+.-...|++|||=|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~l~~~L~~la~~aD~vIDLHt  168 (359)
T cd06250         108 AVADFVEGHLTSDPAANVALVRQALREALAALLPPTELQSTLRLTLQRLALDADIVLDLHC  168 (359)
T ss_pred             CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             0233331135775788999999999998740367624778999999875406788998467


No 101
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=78.09  E-value=5.3  Score=19.74  Aligned_cols=59  Identities=27%  Similarity=0.446  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
Q ss_conf             879889999999999999899999864033622225646589999999999987379107998067655268
Q gi|254781051|r  205 NFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLN  276 (957)
Q Consensus       205 ~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLN  276 (957)
                      .++.++++.+-+.+--|+.         .|.+---++|.+.-    ++|++.|.+.|++.||||=++|+++-
T Consensus        42 ~~~~~~~~~l~~~~~la~~---------lga~~~~~~~~d~~----~~I~~~A~~~~~t~IVlG~~~~~~~~  100 (124)
T cd01987          42 RLSEAERRRLAEALRLAEE---------LGAEVVTLPGDDVA----EAIVEFAREHNVTQIVVGKSRRSRWR  100 (124)
T ss_pred             CCCHHHHHHHHHHHHHHHH---------CCCEEEEEECCCHH----HHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf             5897999999999999998---------59989999479989----99999999849989997689885468


No 102
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=77.94  E-value=5.3  Score=19.71  Aligned_cols=38  Identities=8%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             8875214378269724889999999999743534886898
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      .|-+++.--...-...+||.++=-+|++=+..  .+|-+|
T Consensus       477 Df~~~A~a~G~~g~~V~~~~el~~al~~A~~~--~gP~lI  514 (549)
T PRK06457        477 DFSKLAESVGIKGFRVEDPNELEEAIEEFLNT--EGPAVL  514 (549)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC--CCCEEE
T ss_conf             99999997799799979999999999999818--995999


No 103
>PRK07524 hypothetical protein; Provisional
Probab=77.31  E-value=5.5  Score=19.58  Aligned_cols=19  Identities=26%  Similarity=0.527  Sum_probs=11.5

Q ss_pred             HHHHHHHHHCCCCEEEEECC
Q ss_conf             99999987379107998067
Q gi|254781051|r  251 EEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       251 ~~ii~~a~~~Gv~eiviGMa  270 (957)
                      |.|++.-.+.||+.| +|.+
T Consensus         6 ~~l~~~L~~~Gv~~i-Fgvp   24 (534)
T PRK07524          6 EALVRLLEAYGVETV-FGIP   24 (534)
T ss_pred             HHHHHHHHHCCCCEE-EECC
T ss_conf             999999998799999-9807


No 104
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=76.20  E-value=5.9  Score=19.37  Aligned_cols=45  Identities=18%  Similarity=0.046  Sum_probs=24.0

Q ss_pred             HHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCC
Q ss_conf             3442789845999824311110134320221138653111000024
Q gi|254781051|r  655 LGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFG  700 (957)
Q Consensus       655 L~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFG  700 (957)
                      |..+.++ -..-|.|+...-.|.+-..=..++..+.....-++.-|
T Consensus       814 l~~~~~~-rT~aVvNt~~~PTg~Fv~~~d~~~p~~~~~~~l~~~~g  858 (1168)
T PRK13030        814 LQTVRHG-RTRAVVNTHEIPTADFVRNPDANLHADALLAKIRHAAG  858 (1168)
T ss_pred             HHHHCCC-CEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             9750778-73899507867638774088888996999999998737


No 105
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=75.26  E-value=6.2  Score=19.20  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=19.5

Q ss_pred             HHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCC
Q ss_conf             344278984599982431111013432022113865
Q gi|254781051|r  655 LGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLN  690 (957)
Q Consensus       655 L~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~  690 (957)
                      |..++++ -..-|.||...-.|.+-..=..+...+.
T Consensus       809 L~~~~~~-rT~aVvNt~~~PTg~Fv~d~d~~~p~~~  843 (1155)
T PRK09193        809 LSRMRPG-RTRAVVNTHETPTADFVRNPDWRFPGAS  843 (1155)
T ss_pred             HHHHCCC-CEEEEEECCCCCHHHHHCCCCCCCCHHH
T ss_conf             9751767-7389950786765876218888998489


No 106
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=74.93  E-value=6.3  Score=19.14  Aligned_cols=119  Identities=16%  Similarity=0.227  Sum_probs=64.4

Q ss_pred             EEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             89997178773100044553236777764166654455565445404788862575333467258876451067744365
Q gi|254781051|r  324 VKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAG  403 (957)
Q Consensus       324 v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGG  403 (957)
                      +.+------|=.+-.=|-++|.+.|..                 +.|++  |-||.+|-  ==+.|-..+.+   |.. -
T Consensus        42 ~~~~~NRG~sGIdg~lstAiGaa~a~~-----------------~pvv~--i~GDgsf~--~d~~eL~t~~~---~~~-p   96 (175)
T cd02009          42 VRVFANRGASGIDGTLSTALGIALATD-----------------KPTVL--LTGDLSFL--HDLNGLLLGKQ---EPL-N   96 (175)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHCCC-----------------CCEEE--EEECHHHH--CCHHHHHHHHH---CCC-C
T ss_conf             279946885352208999999996589-----------------98899--97026866--16789999986---699-8


Q ss_pred             EEEEEECCCEE--CCCCC----HHCCCCCCCC-------HHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             79998416020--12470----1024677840-------01122034058742678899999999999999973897399
Q gi|254781051|r  404 NIHLIINNQIG--FTTNP----SSARSCTYAS-------DISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVI  470 (957)
Q Consensus       404 TiHiVvNNQIG--FTT~p----~d~RSs~Y~T-------DiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvI  470 (957)
                      .+-||+||+=|  |-.-|    .+.....|.|       .+|++++.|-..|+  ++|..-.+.+-|++    -..-++|
T Consensus        97 v~ivV~NN~GggIf~~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~----~~gp~lI  170 (175)
T cd02009          97 LTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVI  170 (175)
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHH----CCCCEEE
T ss_conf             29999948983399998775036864312157776689999998699779849--99999999999983----8998999


Q ss_pred             EEE
Q ss_conf             864
Q gi|254781051|r  471 DIV  473 (957)
Q Consensus       471 Dlv  473 (957)
                      ++.
T Consensus       171 EV~  173 (175)
T cd02009         171 EVK  173 (175)
T ss_pred             EEE
T ss_conf             996


No 107
>PRK07586 hypothetical protein; Validated
Probab=73.48  E-value=6.8  Score=18.89  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=10.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHC
Q ss_conf             38678999999999998719
Q gi|254781051|r  938 VGHMSRHLEQLSSFIEDALK  957 (957)
Q Consensus       938 ~G~~~~H~~e~~~li~~a~~  957 (957)
                      .|....-..|.+..|++||+
T Consensus       484 ~g~~V~~~~el~~Al~~a~~  503 (514)
T PRK07586        484 PARRVTTAEEFADALARALA  503 (514)
T ss_pred             EEEEECCHHHHHHHHHHHHC
T ss_conf             79997999999999999972


No 108
>TIGR01824 PabB-clade2 para-aminobenzoate synthase component I; InterPro: IPR010118   This clade of sequences is more closely related to TrpE (anthranilate synthase, IPR005256 from INTERPRO, IPR010116 from INTERPRO, IPR005257 from INTERPRO) than to the better characterised group of PabB enzymes (IPR005802 from INTERPRO, IPR010117 from INTERPRO). This clade includes one characterised enzyme from Lactococcus  and the conserved function across the clade is supported by these pieces of evidence: 1) all genomes with a member in this clade also have a separate TrpE gene, 2) none of these genomes contain an apparent PabB from any of the other PabB clades, 3) none of these sequences are found in a region of the genome in association with other Trp biosynthesis genes, 4) all of these genomes apparently contain most if not all of the steps of the folate biosynthetic pathway (for which PABA is a precursor). Many of the sequences are annotated as TrpE enzymes, however, we believe that all members of this clade are, in fact, PabB. The sequences from Bacillus halodurans and B.subtilus, are also likely to be PabB enzymes, but are too closely related to TrpE to be separated at this time..
Probab=73.00  E-value=2.2  Score=22.66  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=33.4

Q ss_pred             CCHHHC-CCEEECCCCCCCCCCCHHHHHHHHHHH----HCCCEEEE
Q ss_conf             997881-715725665787777899999999984----06430277
Q gi|254781051|r  140 FVKADY-DRKICMKGVLGLESATIPEIVDVLSHL----YCSNIGVE  180 (957)
Q Consensus       140 Lse~DL-d~~f~~~~~~g~~~~tL~eIi~~L~~t----YCgsIGvE  180 (957)
                      ++-.|| +-.|+-|++-|-++..--+||+.||.+    |||++|+=
T Consensus       272 ~~~~dl~~A~FPgGsITGAPK~r~m~iI~eLEp~~Rg~Y~Gs~G~~  317 (373)
T TIGR01824       272 LTLADLIAALFPGGSITGAPKVRAMEIIEELEPQRRGPYTGSVGWI  317 (373)
T ss_pred             CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf             7888999642878744489727899999986378987541238888


No 109
>COG0147 TrpE Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=72.87  E-value=1.1  Score=24.81  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=26.3

Q ss_pred             CCHHHHHHHHHHHHCCCC-------CCCEEEECCCHHHCCCCC
Q ss_conf             889999999999743534-------886898566022108012
Q gi|254781051|r  765 TSPANYFHILRRQIYDRS-------SRPLIMMAPKSLLRHKRV  800 (957)
Q Consensus       765 ttpAq~FH~LRRQ~~r~~-------rkPLiv~tPKsLLR~~~a  800 (957)
                      ..|-++|..||.+--.+|       -.-+|-.+|.++++....
T Consensus       227 ~~p~~~y~~Lr~~NPspY~~~l~~~~~~ivg~SPE~~v~v~~~  269 (462)
T COG0147         227 GDPLALYRRLRQRNPSPYMFFLRLGDFTLVGASPELFVKVDGN  269 (462)
T ss_pred             CCHHHHHHHHHHCCCCCHHHEEECCCCEEEEECHHHHEEECCC
T ss_conf             9989999999734996112103169818999760563788088


No 110
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=71.95  E-value=7.3  Score=18.64  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=18.1

Q ss_pred             HHHHHCCCCCCCC--HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             9987334356421--1478988898863583157850100223332302799
Q gi|254781051|r  594 RQKMIETGKGIDW--SMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAIL  643 (957)
Q Consensus       594 R~~~~~~~~~iDW--~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFshRHavl  643 (957)
                      ++-.+--|.++.+  +.+|..+++-.+  |.||=-|  -.+||+|...|--.
T Consensus       208 ~rPvIl~G~g~~~~~a~~~l~~lae~l--~~Pv~tt--~~gkg~~p~~hp~~  255 (562)
T PRK06048        208 CRPVIYAGGGVISSNASAELVELAETL--NAPVTTT--LMGIGSIPTEHPLY  255 (562)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEC--CCCCCCCCCCCCCC
T ss_conf             997899577645122899999999985--9887863--34546677667422


No 111
>PTZ00089 transketolase; Provisional
Probab=71.85  E-value=7.4  Score=18.62  Aligned_cols=118  Identities=19%  Similarity=0.335  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCC
Q ss_conf             45532367777641666544555654454047888625753334672588764510677443657999841602012470
Q gi|254781051|r  340 PVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP  419 (957)
Q Consensus       340 PVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p  419 (957)
                      +...|++=|........ +.+... -=-++|.+|+  ||.... .||++|.++++.  .+..+--|=|+=+|+|--..+-
T Consensus       123 ~~avGmAla~~~l~~~~-~~~~~~-i~d~~vy~l~--GDG~l~-EG~~~EA~~~Ag--~~~L~nLi~i~D~N~i~idg~~  195 (670)
T PTZ00089        123 SNAVGMAIAAHNLADKY-NTEEFK-IFDNYVYAIC--GDGCMQ-EGVFCEAASLAG--HLGLGRLILLYDDNKITIDGNT  195 (670)
T ss_pred             HHHHHHHHHHHHHHHHH-CCCCCC-CCCCEEEEEE--CCCCCC-CHHHHHHHHHHH--HCCCCCEEEEEECCCCCCCCCC
T ss_conf             99999999999987561-877666-5463399997--775434-589999999864--6289988999917721146885


Q ss_pred             HHCCCCCCCCHHHHHHCC---CEEEE-CCC-CHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             102467784001122034---05874-267-88999999999999999738973998
Q gi|254781051|r  420 SSARSCTYASDISKSIGI---PIFHV-NGD-DPEAVIRVVRMAVSFRMKFHKSVVID  471 (957)
Q Consensus       420 ~d~RSs~Y~TDiAK~i~a---PI~HV-N~D-dpEav~~~~~lA~~yR~~F~kDVvID  471 (957)
                      .    -.+..|+++-+.+   -|++| +|. |.+++..+.+-|   +..=.|-.+|-
T Consensus       196 ~----~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~A---k~~~~kPtlI~  245 (670)
T PTZ00089        196 D----LSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEA---KKNLKQPSLII  245 (670)
T ss_pred             C----CCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHH---HHCCCCCEEEE
T ss_conf             4----36566599999980771343366777999999999999---85589984899


No 112
>PRK05940 anthranilate synthase component I-like protein; Validated
Probab=71.10  E-value=1.3  Score=24.31  Aligned_cols=76  Identities=11%  Similarity=0.038  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC---CCCCCCCCCEEEEE--
Q ss_conf             6589999999999987379107998067655268999885379899999855887432234---55510015026889--
Q gi|254781051|r  243 SEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEY---SGDVKYHLGLCCNR--  317 (957)
Q Consensus       243 ~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~---sGDVKYHLG~s~~~--  317 (957)
                      -|..+-+++.+.+.-..-.+=+|++..--+...       ..++-++|....-.+|..+..   .+|. .-+|.|-++  
T Consensus       189 ~~~y~~~v~~~k~~I~~Gd~yQv~ls~r~~~~~-------~~~p~~~y~~Lr~~nPsPy~~~~~~~~~-~iissSPE~~~  260 (459)
T PRK05940        189 QQEYEAAVRQAKKYIQAGDIFQANLSLRFETTT-------KADSWQIYQRLQQINPSPFASYWRTPWG-EMISCSPERLV  260 (459)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCEEEEECC-------CCCHHHHHHHHHHHCCCCCEEEEECCCC-EEEECCHHHHH
T ss_conf             999999999999998649889997776998268-------9999999999984389984478966995-09836999998


Q ss_pred             EECCCEEEE
Q ss_conf             835961899
Q gi|254781051|r  318 QICGKDVKL  326 (957)
Q Consensus       318 ~~~g~~v~l  326 (957)
                      +..++.|..
T Consensus       261 ~~~~~~v~t  269 (459)
T PRK05940        261 QLQGNQAQT  269 (459)
T ss_pred             HHCCCEEEE
T ss_conf             533997999


No 113
>PRK07508 para-aminobenzoate synthase component I; Provisional
Probab=71.01  E-value=1.2  Score=24.51  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHCCCHHH
Q ss_conf             99999999999988170454
Q gi|254781051|r   97 DFFQVMKMIDAYRSYGHFKA  116 (957)
Q Consensus        97 kq~rV~~LI~AYR~~GHl~A  116 (957)
                      +-..+..-|.+.+..||..|
T Consensus        30 eV~~~l~~ie~a~~~G~~~a   49 (377)
T PRK07508         30 EFAPALAAMEAARAAGKWLA   49 (377)
T ss_pred             HHHHHHHHHHHHHHCCCEEE
T ss_conf             99999999999987799899


No 114
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=70.58  E-value=7.8  Score=18.43  Aligned_cols=38  Identities=5%  Similarity=0.152  Sum_probs=26.0

Q ss_pred             HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             8875214378269724889999999999743534886898
Q gi|254781051|r  749 RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIM  788 (957)
Q Consensus       749 RfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv  788 (957)
                      .|-+|+.--...=.-.+||.++=.+|++=+..  .+|-+|
T Consensus       517 Df~~lA~a~G~~g~rV~~~~eL~~Al~~Al~~--~gP~li  554 (615)
T PRK07418        517 DFVKLAEAFGVKGMLISERDQLKDAIAEALAH--DGPVLI  554 (615)
T ss_pred             CHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC--CCCEEE
T ss_conf             99999997799799979999999999999808--997899


No 115
>PRK13572 anthranilate synthase component I; Provisional
Probab=70.50  E-value=1.7  Score=23.53  Aligned_cols=10  Identities=30%  Similarity=0.600  Sum_probs=3.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254781051|r  767 PANYFHILRR  776 (957)
Q Consensus       767 pAq~FH~LRR  776 (957)
                      |-++|-.||+
T Consensus       203 p~~~Yr~LR~  212 (430)
T PRK13572        203 PFQLYRNLRE  212 (430)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986


No 116
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726    Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=70.12  E-value=2.6  Score=22.06  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=72.9

Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98347636789689999999987380507989999987367643333334344432222222211123334455566655
Q gi|254781051|r    9 FSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCS   88 (957)
Q Consensus         9 f~~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (957)
                      |-.|+|+.+.++.|++.-|             |+.=|+                          ....+.++...+++++
T Consensus       233 wR~Da~~~a~H~~YL~~~Y-------------w~~~~S--------------------------iS~PRLRP~~n~aPas  273 (378)
T TIGR02351       233 WRTDAFFTAYHLRYLQKKY-------------WKTKYS--------------------------ISVPRLRPCTNDAPAS  273 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHC-------------CCCCEE--------------------------ECCCCCCCCCCCCCCC
T ss_conf             2289999999999998636-------------833030--------------------------3254336766897646


Q ss_pred             CCCHHH-HHHHHHHHHHHHHHHHCCCHH-------------HCCCCCCCCCCCCCCCCCCHHHCC--CCHHHCCCEEECC
Q ss_conf             563367-899999999999998817045-------------401677777766787767876669--9978817157256
Q gi|254781051|r   89 LGETQS-VKDFFQVMKMIDAYRSYGHFK-------------ANIDPLGYNSHQKDLSELSPAHYG--FVKADYDRKICMK  152 (957)
Q Consensus        89 ~~~~~~-~~kq~rV~~LI~AYR~~GHl~-------------A~lDPLgl~~~~~~~peL~~~~yG--Lse~DLd~~f~~~  152 (957)
                      ...... .-+.....|||-|||-.=|..             =++=|||...-... ..-.|.-|-  ..+.+|++ |.+ 
T Consensus       274 G~~p~~~~~~d~~LvQ~~cAyRLF~p~~~IslSTRE~~~FRDn~~pLGiT~~SAG-ssT~pGGy~eC~~~~~leQ-FeI-  350 (378)
T TIGR02351       274 GLKPKVKIVTDRELVQLICAYRLFDPDVEISLSTRESKKFRDNVIPLGITKMSAG-SSTEPGGYSECSEKKGLEQ-FEI-  350 (378)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCC-CCC-
T ss_conf             7856665257678899999998734104744020256545664336632201122-0158866203788888751-012-


Q ss_pred             CCCCCCCCCHHHHHHHHHHH
Q ss_conf             65787777899999999984
Q gi|254781051|r  153 GVLGLESATIPEIVDVLSHL  172 (957)
Q Consensus       153 ~~~g~~~~tL~eIi~~L~~t  172 (957)
                          .+..|+.||.+.||+.
T Consensus       351 ----~D~Rsv~Ev~~~lr~~  366 (378)
T TIGR02351       351 ----SDERSVAEVEEDLRKK  366 (378)
T ss_pred             ----CCCCCHHHHHHHHHHC
T ss_conf             ----4678888999999862


No 117
>PRK13574 anthranilate synthase component I; Provisional
Probab=69.95  E-value=1.6  Score=23.65  Aligned_cols=11  Identities=27%  Similarity=0.664  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999997
Q gi|254781051|r  767 PANYFHILRRQ  777 (957)
Q Consensus       767 pAq~FH~LRRQ  777 (957)
                      |-+.|-.||+.
T Consensus       195 p~~lY~~LR~~  205 (422)
T PRK13574        195 PMRFYYNLRKI  205 (422)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999965


No 118
>KOG1184 consensus
Probab=69.84  E-value=4.9  Score=19.97  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--------CCCCCCCCHHHHHHH-HHCCCHHHHHHHHHHHC
Q ss_conf             678899999999999999973897399864211256564--------354223557888886-71899899999998644
Q gi|254781051|r  444 GDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNE--------GDEPSFTQPMMYKTI-RSHKSVLQLYADSLMKN  514 (957)
Q Consensus       444 ~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE--------~DeP~fTQP~mY~~I-~~hp~v~~~Y~~~Li~~  514 (957)
                      -.|+|.--.|...++++-++=+++|++-=.|-||++|-.        .--|.|--|.==-.| ..||..--+|      -
T Consensus       192 ~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~~~~~~~~~~~l~~~~~~p~~vtp~~Kg~i~E~hp~y~Gvy------~  265 (561)
T KOG1184         192 PSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPESHPHYGGVY------W  265 (561)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEE------E
T ss_conf             7717889999999999864136873640432257678999999877537870572156555467688551367------0


Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             898989999999999
Q gi|254781051|r  515 QVISKQELQSLANNW  529 (957)
Q Consensus       515 g~it~~e~~~~~~~~  529 (957)
                      |.++..++.++.+..
T Consensus       266 G~vs~~~~~e~vesa  280 (561)
T KOG1184         266 GAVSTPFVKEIVESA  280 (561)
T ss_pred             CCCCCHHHHHHHHHC
T ss_conf             435638799998625


No 119
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=69.66  E-value=5.1  Score=19.81  Aligned_cols=85  Identities=28%  Similarity=0.358  Sum_probs=66.5

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------CCCCCCCCCCHHHHHHHH-HCCCHHHHHHH
Q ss_conf             587426788999999999999999738973998642112565--------643542235578888867-18998999999
Q gi|254781051|r  439 IFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH--------NEGDEPSFTQPMMYKTIR-SHKSVLQLYAD  509 (957)
Q Consensus       439 I~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GH--------NE~DeP~fTQP~mY~~I~-~hp~v~~~Y~~  509 (957)
                      .+++-.-|||+--.+...+++.=++=+|-++|-=.|-+|+|-        |..--|.||-|+==-.|. .||+-.-+|  
T Consensus       184 ~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY--  261 (557)
T COG3961         184 DLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVY--  261 (557)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEE--
T ss_conf             444689998899999999999984568867851423312226999999998408976994246545566688700377--


Q ss_pred             HHHHCCCCCHHHHHHHHHHH
Q ss_conf             98644898989999999999
Q gi|254781051|r  510 SLMKNQVISKQELQSLANNW  529 (957)
Q Consensus       510 ~Li~~g~it~~e~~~~~~~~  529 (957)
                          .|.++..++.+..+.-
T Consensus       262 ----~G~~s~~~vre~vE~a  277 (557)
T COG3961         262 ----NGKLSEPEVREAVESA  277 (557)
T ss_pred             ----ECCCCCHHHHHHHHCC
T ss_conf             ----5434878799986237


No 120
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=68.35  E-value=8.7  Score=18.10  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=10.5

Q ss_pred             HHHHCCCCCEEEEECCCHHHHHHHH
Q ss_conf             8752143782697248899999999
Q gi|254781051|r  750 FLQMCAENNMYVANCTSPANYFHIL  774 (957)
Q Consensus       750 fLQl~a~~N~~V~~~ttpAq~FH~L  774 (957)
                      |-+++.--...-.-++||..+=-+|
T Consensus       501 f~~iA~a~G~~~~rv~~~~eL~~aL  525 (566)
T PRK07282        501 FQLMAQAYGIKHYKFDNPETLAQDL  525 (566)
T ss_pred             HHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             9999997798799989999999999


No 121
>PRK13570 anthranilate synthase component I; Provisional
Probab=67.24  E-value=1.9  Score=23.06  Aligned_cols=17  Identities=24%  Similarity=0.534  Sum_probs=7.7

Q ss_pred             CCCEEEECCCCHHHHHH
Q ss_conf             34058742678899999
Q gi|254781051|r  436 GIPIFHVNGDDPEAVIR  452 (957)
Q Consensus       436 ~aPI~HVN~DdpEav~~  452 (957)
                      +.+=+++=|-.||.-++
T Consensus       249 ~~~~~~IigsSPE~~vr  265 (454)
T PRK13570        249 DFGDYQVIGSSPESLVS  265 (454)
T ss_pred             ECCCCEEECCCHHHHCE
T ss_conf             32561798479789503


No 122
>PRK13565 anthranilate synthase component I; Provisional
Probab=67.10  E-value=2.4  Score=22.37  Aligned_cols=21  Identities=5%  Similarity=0.028  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999999999987379107998
Q gi|254781051|r  247 IPAIEEIIRQGVQQGVDEMIL  267 (957)
Q Consensus       247 IP~L~~ii~~a~~~Gv~eivi  267 (957)
                      +-+++.+.+.-..-.+=+||+
T Consensus       222 ~~~V~~~k~~I~~GDifQv~l  242 (490)
T PRK13565        222 LAAVRKAKEYIAAGDCMQVVP  242 (490)
T ss_pred             HHHHHHHHHHHHCCCEEEEEC
T ss_conf             999999999987497799962


No 123
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=66.11  E-value=6.2  Score=19.21  Aligned_cols=70  Identities=29%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHC---------CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             11220340587426788999999999999999738---------973998642112565643542235578888867189
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFH---------KSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHK  501 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~---------kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp  501 (957)
                      +=-+++-|||||-+.|-|+.....++|.+-  -|+         +-++|.|.+=-|     +|.|--        -+..-
T Consensus        92 iwl~~~ppIlHV~~r~~e~A~~L~~~a~~~--GFK~SgI~sis~~r~iVEI~~~er-----mdvpl~--------e~g~~  156 (208)
T COG1590          92 IWLKVQPPILHVAARDLEAAKKLLNIARSC--GFKHSGIKSISQKRVIVEIRGTER-----MDVPLG--------EDGKI  156 (208)
T ss_pred             EEEEEECCEEEEEECCHHHHHHHHHHHHHC--CCCCCCEEEECCCCEEEEECCCCE-----EEEEEC--------CCCCE
T ss_conf             999832878998847678899999999862--975345267437728999746522-----564405--------78729


Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             98999999986448
Q gi|254781051|r  502 SVLQLYADSLMKNQ  515 (957)
Q Consensus       502 ~v~~~Y~~~Li~~g  515 (957)
                      -|.+-|.+.|++-.
T Consensus       157 ~v~~eyl~~lv~~~  170 (208)
T COG1590         157 LVDDEYLKFLVEIA  170 (208)
T ss_pred             EECHHHHHHHHHHH
T ss_conf             97689999999999


No 124
>PRK09070 hypothetical protein; Validated
Probab=65.39  E-value=2  Score=22.86  Aligned_cols=41  Identities=17%  Similarity=0.025  Sum_probs=23.5

Q ss_pred             HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCC
Q ss_conf             2034058742678899999999999999973897399-86421125656435
Q gi|254781051|r  434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVI-DIVCYRRFGHNEGD  484 (957)
Q Consensus       434 ~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvI-Dlv~YRr~GHNE~D  484 (957)
                      .++.+=++|=|-.||.-+++-          +..|.+ =|=|=|+.|.|+.|
T Consensus       242 yl~~~d~~IvgsSPE~lvrv~----------~~~V~trPIaGTr~RG~~~~~  283 (451)
T PRK09070        242 LFVAGGRAIVSSSPERLVSVQ----------GGVVQTRPIAGTRPRFVGDDD  283 (451)
T ss_pred             EEECCCCEEEECCHHHHCCCC----------CCEEEEECCCCCCCCCCCHHH
T ss_conf             771588389916989970745----------897999657656789988789


No 125
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=64.06  E-value=10  Score=17.51  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf             999999999998737910799806765526899
Q gi|254781051|r  246 IIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVL  278 (957)
Q Consensus       246 lIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL  278 (957)
                      |...-|.|++.-.+.||+. ++|.|=-.=|.++
T Consensus         2 m~Tv~d~i~~~L~~~Gv~~-iFgvpG~~~~~~~   33 (521)
T PRK07092          2 MTTVRDATIDLLRRFGITT-VFGNPGSTELPFL   33 (521)
T ss_pred             CCCHHHHHHHHHHHCCCCE-EEECCCCCHHHHH
T ss_conf             8729999999999879999-9988874479999


No 126
>PRK13571 anthranilate synthase component I; Provisional
Probab=63.99  E-value=3  Score=21.60  Aligned_cols=23  Identities=9%  Similarity=0.030  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             89999999999987379107998
Q gi|254781051|r  245 VIIPAIEEIIRQGVQQGVDEMIL  267 (957)
Q Consensus       245 slIP~L~~ii~~a~~~Gv~eivi  267 (957)
                      ...-+++.+.+.-.+-.|=+||+
T Consensus       231 ey~~~V~kaKeyI~aGDIFQVVL  253 (506)
T PRK13571        231 EYGAAVERLVEEIRAGEAFQVVP  253 (506)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999999999997498899987


No 127
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=63.22  E-value=11  Score=17.41  Aligned_cols=57  Identities=25%  Similarity=0.379  Sum_probs=36.9

Q ss_pred             ECCCCCHH-CCCCCCCCHH----HHHHCC--CEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             01247010-2467784001----122034--058-7426788999999999999999738973998642
Q gi|254781051|r  414 GFTTNPSS-ARSCTYASDI----SKSIGI--PIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       414 GFTT~p~d-~RSs~Y~TDi----AK~i~a--PI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      |+||||.- .|+..=+.|+    .+.+.-  |+. -|-|+|.|.-+.-++-   ++ +..++|+|-+=|
T Consensus        24 GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~l~~qv~~~~~e~M~~~a~~---l~-~~~~nvvVKIP~   88 (220)
T PRK12653         24 GVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARK---LR-SIIADIVVKVPV   88 (220)
T ss_pred             EECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHH---HH-HHCCCEEEEECC
T ss_conf             585889999855989899999999980899858999875889999999999---98-735780899488


No 128
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=63.17  E-value=11  Score=17.40  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=11.1

Q ss_pred             EECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             2225646589999999999987379107998067
Q gi|254781051|r  237 RFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       237 RFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMa  270 (957)
                      |.-+-|+|.++=.       -.+.||+.| +|.+
T Consensus        10 ~~k~tga~~lv~~-------L~~~Gv~~v-Fg~p   35 (564)
T PRK08155         10 RKRFTGAELIVHL-------LERQGIRIV-TGIP   35 (564)
T ss_pred             CCEEEHHHHHHHH-------HHHCCCCEE-EEEC
T ss_conf             7433799999999-------998799889-9968


No 129
>PRK13569 anthranilate synthase component I; Provisional
Probab=62.42  E-value=2.9  Score=21.69  Aligned_cols=24  Identities=13%  Similarity=0.131  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             899999999999873791079980
Q gi|254781051|r  245 VIIPAIEEIIRQGVQQGVDEMILG  268 (957)
Q Consensus       245 slIP~L~~ii~~a~~~Gv~eiviG  268 (957)
                      ..+-+++.+.+.-..-.|=+||+.
T Consensus       232 ey~~~V~kaKeyI~aGDIfQVVLS  255 (506)
T PRK13569        232 RFLADVERIKEYIKAGDIFQAVLS  255 (506)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             999999999999865988999864


No 130
>PRK06404 anthranilate synthase component I; Reviewed
Probab=60.67  E-value=3.4  Score=21.16  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             HHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC---CCC
Q ss_conf             64033622225646589999999999987379107998067655268999885379899999855887432234---555
Q gi|254781051|r  230 IKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEY---SGD  306 (957)
Q Consensus       230 ~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~---sGD  306 (957)
                      ++|.+.|.=|----|.+.-.++.+.+.-..-.+=+||+.  +  |+-  +++   .+-.++..+.-.+|.....   -||
T Consensus        91 ~~~~~~~~~sn~~~~ey~~~v~kike~I~~GDi~Qvvls--q--rf~--~~~---dp~~~y~~lr~~NPsPY~~y~~~~~  161 (351)
T PRK06404         91 KSFKTVKLKGNYNDISLSLKIKELIELIRAGEVLQVVIS--R--EFE--ANI---DFKEKLSEFINNDRSRYVFYYRFGK  161 (351)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE--E--EEC--CCC---CHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             333431010458999999999999999866875999605--8--850--679---9899999997449997489999899


Q ss_pred             CCCCCCEEEEE--EECCCEEEE
Q ss_conf             10015026889--835961899
Q gi|254781051|r  307 VKYHLGLCCNR--QICGKDVKL  326 (957)
Q Consensus       307 VKYHLG~s~~~--~~~g~~v~l  326 (957)
                      .. =+|.|-++  +..|+.|..
T Consensus       162 ~~-iigaSPE~~l~~~~~~i~t  182 (351)
T PRK06404        162 YR-VVGSSPENVFTVNGNIINV  182 (351)
T ss_pred             CE-EEEECHHHHEEECCCEEEE
T ss_conf             48-9981867861863998999


No 131
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780    The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane.    This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=60.30  E-value=9.6  Score=17.76  Aligned_cols=144  Identities=20%  Similarity=0.301  Sum_probs=81.7

Q ss_pred             HHHHHCCCEEE-ECC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHH--HHHHCCCHHHH
Q ss_conf             11220340587-426-788999999999999999738973998642112565643542235578888--86718998999
Q gi|254781051|r  431 ISKSIGIPIFH-VNG-DDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYK--TIRSHKSVLQL  506 (957)
Q Consensus       431 iAK~i~aPI~H-VN~-DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~--~I~~hp~v~~~  506 (957)
                      +++=+++|||+ ... -+|...+..++=|++|=++=+.||||    +===|==..||     .+|-+  .|++--.+-++
T Consensus       154 Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI----~DTAGRL~ID~-----~LM~EL~~iK~~~nP~Ei  224 (439)
T TIGR00959       154 LGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVI----VDTAGRLQIDE-----ELMEELAEIKEILNPDEI  224 (439)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE----EECCCCHHHHH-----HHHHHHHHHHHHHCCCEE
T ss_conf             767528871100478889887789999999999974897899----72675125559-----999999999888688705


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHH--------------HC--CCC-------CCCCCCCCCC-------
Q ss_conf             99998644898989999999999999775-66654--------------12--587-------6566665686-------
Q gi|254781051|r  507 YADSLMKNQVISKQELQSLANNWHKYLEA-EYKES--------------ES--YCP-------EKLGLLHNGE-------  555 (957)
Q Consensus       507 Y~~~Li~~g~it~~e~~~~~~~~~~~l~~-~~~~~--------------k~--~~~-------~~~~~~~~~~-------  555 (957)
                         -||-.+ +|=+|+=...+.|.+.|.= .+=-+              |.  -.|       ++...+....       
T Consensus       225 ---LlVvDa-M~GQdAvn~A~~F~e~lgltG~vltK~DGDaRGGAALS~~~~tg~PIKFiG~GEK~~dLe~FhP~R~A~R  300 (439)
T TIGR00959       225 ---LLVVDA-MTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIEDLEPFHPDRMASR  300 (439)
T ss_pred             ---EECCHH-CCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             ---412201-0216999999863660013547885475660578999999996896188841777233124674789863


Q ss_pred             -----------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             -----------2666778999999998874368998620567788
Q gi|254781051|r  556 -----------NERKNSVSKEILKKIGSSIIRLPKSFNTHKIVER  589 (957)
Q Consensus       556 -----------~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k  589 (957)
                                 +...--|+.+..+++.+|+. - +.|++.--+.-
T Consensus       301 ILGMGDv~SLvEKA~~~~D~~~a~~~~~K~~-~-~~FdleDfl~Q  343 (439)
T TIGR00959       301 ILGMGDVLSLVEKAQEVVDEEEAKKLAEKML-K-GQFDLEDFLEQ  343 (439)
T ss_pred             HCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH-C-CCCCHHHHHHH
T ss_conf             2365522369999998518899999999863-0-58898999999


No 132
>PRK13564 anthranilate synthase component I; Provisional
Probab=58.54  E-value=3.1  Score=21.53  Aligned_cols=25  Identities=4%  Similarity=0.056  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             5899999999999873791079980
Q gi|254781051|r  244 EVIIPAIEEIIRQGVQQGVDEMILG  268 (957)
Q Consensus       244 EslIP~L~~ii~~a~~~Gv~eiviG  268 (957)
                      |..+-+.+.+-+.-.+-.+=+||+.
T Consensus       244 eeY~~~V~kaKeyI~~GDIFQVVLS  268 (521)
T PRK13564        244 EEFCQVVRKLKEHIRAGDIFQVVPS  268 (521)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             9999999999999763987999534


No 133
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.45  E-value=4  Score=20.67  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=16.2

Q ss_pred             CCCCCHHHHHHHHHHHCCCCE-EEEECCCCCCCCCHHH
Q ss_conf             148682899999985379983-9980678531784578
Q gi|254781051|r  870 QLYPFPEDYLIKVLSRFVQAE-IVWCQEEPQNMGAWTF  906 (957)
Q Consensus       870 qLyPfP~~~l~~~l~~y~~~e-~vW~QEEp~N~GaW~~  906 (957)
                      +|-|||.+.... ..+-+.++ -||...|++|-|.|.|
T Consensus        38 ~Lp~lpe~~~~~-en~V~GC~S~vwL~~~~~~~~~~~F   74 (144)
T COG2166          38 QLPPLPEELRAE-ENPVPGCQSQVWLVTEQNDDGTLHF   74 (144)
T ss_pred             HCCCCCHHHHHH-CCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf             089999788724-2678765423368886168863788


No 134
>PRK13573 anthranilate synthase component I; Provisional
Probab=57.09  E-value=3.3  Score=21.26  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf             5899999999999873791079980676552689998853798999998558874322
Q gi|254781051|r  244 EVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEK  301 (957)
Q Consensus       244 EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~  301 (957)
                      |...-+++.+.+.-..-.+=+||+.=--...+       ..++-+++......+|..+
T Consensus       231 eeY~~~V~~~k~~I~~Gdi~Qvvlsqrf~~~~-------~~~p~~lYr~LR~~NPsPy  281 (503)
T PRK13573        231 EGYKAAVEKAKDYIRAGDIFQVVPSQRWTQDF-------RLPPFALYRSLRRTNPSPF  281 (503)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEC-------CCCHHHHHHHHHHHCCCCC
T ss_conf             99999999999999749979998235999833-------8998999999863689831


No 135
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=56.76  E-value=14  Score=16.62  Aligned_cols=112  Identities=18%  Similarity=0.138  Sum_probs=60.1

Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCC--------CEEEECCCCHHHHHHHHHHH
Q ss_conf             2588764510677443657999841602012470102467784001122034--------05874267889999999999
Q gi|254781051|r  386 IVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI--------PIFHVNGDDPEAVIRVVRMA  457 (957)
Q Consensus       386 VV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~a--------PI~HVN~DdpEav~~~~~lA  457 (957)
                      -|.-.+.+++     .|.. =-|||+|+|=         -.|..|+|+.|-.        +|+|+.++-.   +--..+|
T Consensus       158 Fv~tml~la~-----~~~~-l~vv~Dq~gs---------Pt~~~dlA~~i~~ll~~~~~~~~yH~~~~g~---~Swydfa  219 (281)
T COG1091         158 FVKTMLRLAK-----EGKE-LKVVDDQYGS---------PTYTEDLADAILELLEKEKEGGVYHLVNSGE---CSWYEFA  219 (281)
T ss_pred             HHHHHHHHHH-----CCCC-EEEECCEEEC---------CCCHHHHHHHHHHHHHCCCCCCEEEEECCCC---CCHHHHH
T ss_conf             8999999850-----5992-6997984538---------7469999999999983455586799807974---1199999


Q ss_pred             HHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             9999973897399864211256564354223557888886718998999999986448989899999999999
Q gi|254781051|r  458 VSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH  530 (957)
Q Consensus       458 ~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~  530 (957)
                      -.-=..++.|.             +.-+|.-+.  -|....++|.-..+=.+|+.+.+.++.-+-+...+.+.
T Consensus       220 ~~I~~~~~~~~-------------~v~~~~~~~--~~~~~a~RP~~S~L~~~k~~~~~~~~~~~w~~~l~~~~  277 (281)
T COG1091         220 KAIFEEAGVDG-------------EVIEPIASA--EYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALL  277 (281)
T ss_pred             HHHHHHHCCCC-------------CCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             99999838886-------------414555622--36766789755542528899974889825999999997


No 136
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=56.24  E-value=11  Score=17.35  Aligned_cols=74  Identities=22%  Similarity=0.434  Sum_probs=48.1

Q ss_pred             CCCCCCCCCEEEEEECCCEECCC------CCHHCCCCCCCC--HHHHHH----CCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             06774436579998416020124------701024677840--011220----340587426788999999999999999
Q gi|254781051|r  395 GLSGYTVAGNIHLIINNQIGFTT------NPSSARSCTYAS--DISKSI----GIPIFHVNGDDPEAVIRVVRMAVSFRM  462 (957)
Q Consensus       395 ~l~gY~tGGTiHiVvNNQIGFTT------~p~d~RSs~Y~T--DiAK~i----~aPI~HVN~DdpEav~~~~~lA~~yR~  462 (957)
                      -|.|-+++|++|+-+---+=--|      +-.-+-+-+++|  |+|-.+    +.|||-.-|.+.|.-..++.-.++++ 
T Consensus        42 PlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~-  120 (420)
T COG0499          42 PLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWE-  120 (420)
T ss_pred             CCCCCEEEEEEEEHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC-
T ss_conf             9776578998731587999999998558569985278876667899998750596179970787899999999995659-


Q ss_pred             HHCCCEEEEE
Q ss_conf             7389739986
Q gi|254781051|r  463 KFHKSVVIDI  472 (957)
Q Consensus       463 ~F~kDVvIDl  472 (957)
                         -|++||=
T Consensus       121 ---p~iiiDD  127 (420)
T COG0499         121 ---PNIIIDD  127 (420)
T ss_pred             ---CCEEEEC
T ss_conf             ---9879824


No 137
>smart00604 MD MD domain.
Probab=55.34  E-value=6.8  Score=18.91  Aligned_cols=13  Identities=23%  Similarity=0.381  Sum_probs=5.5

Q ss_pred             EEEEECCCCCCCHH
Q ss_conf             89997178773100
Q gi|254781051|r  324 VKLLLQSNPSHLEF  337 (957)
Q Consensus       324 v~lsL~~NPSHLEa  337 (957)
                      ..|++-.+ |-|+.
T Consensus        21 Cti~vR~q-S~lqV   33 (145)
T smart00604       21 CTISVRSQ-SSLQV   33 (145)
T ss_pred             EEEEEEEC-CCEEE
T ss_conf             89999835-64698


No 138
>PRK06163 hypothetical protein; Provisional
Probab=54.04  E-value=15  Score=16.31  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHH---CCCCCCCCCEEEEEECCCE
Q ss_conf             0044553236777764166654455565445404788862575333467258876451---0677443657999841602
Q gi|254781051|r  337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLS---GLSGYTVAGNIHLIINNQI  413 (957)
Q Consensus       337 aVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls---~l~gY~tGGTiHiVvNNQI  413 (957)
                      ...|+.+|.+-|+-+                ++|++|-  ||.+|-        |+|-   -+-.|.-.--+|||+||..
T Consensus        61 ~as~iaLG~Ala~p~----------------k~Vi~iD--GDGs~L--------M~mGsLaTi~~~~p~Nl~hIvlnN~~  114 (202)
T PRK06163         61 LAFPIALGVALAQPK----------------RRVIALE--GDGSLL--------MQLGALGTIAALAPKNLTIIVMDNGV  114 (202)
T ss_pred             CHHHHHHHHHHHCCC----------------CEEEEEE--CCHHHH--------HCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             188999999987899----------------8289994--766887--------35688999997178856999986964


Q ss_pred             ECCCC--CHHCCCCCCCCHHHHHHCCC-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             01247--01024677840011220340-587426788999999999999999738973998642
Q gi|254781051|r  414 GFTTN--PSSARSCTYASDISKSIGIP-IFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVC  474 (957)
Q Consensus       414 GFTT~--p~d~RSs~Y~TDiAK~i~aP-I~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~  474 (957)
                      -=.|-  |..+-...==..|||..+.+ .+.|  ++++....+.+-++    +...-+||++-+
T Consensus       115 ~~stGgQ~T~~~~~vDf~~iA~a~Gy~~~~~v--~~~~el~~~l~~~l----~~~GP~fi~Vki  172 (202)
T PRK06163        115 YQITGGQPTLTSQTVDVVAIARGAGLENSHWA--ADEAHFEALVDQAL----SGPGPSFIAVRI  172 (202)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE--CCHHHHHHHHHHHH----HCCCCEEEEEEE
T ss_conf             00168745776788799999997799857997--79999999999998----389989999993


No 139
>pfam11300 DUF3102 Protein of unknown function (DUF3102). This family of proteins has no known function.
Probab=53.52  E-value=15  Score=16.26  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHH----HCCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999999998817045401677777766787767876----66999788171572566578777789999999998
Q gi|254781051|r  100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPA----HYGFVKADYDRKICMKGVLGLESATIPEIVDVLSH  171 (957)
Q Consensus       100 rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~----~yGLse~DLd~~f~~~~~~g~~~~tL~eIi~~L~~  171 (957)
                      -+.+|++.|+.||+..+..++=. .......+.|.+.    -.|+.++|.++-+.-   ...+.||.||+-+.+++
T Consensus        58 tA~~~M~v~~eyG~~~~~~~~~~-~~n~~~l~~L~ytqal~Ll~~PeeeR~efi~e---~dve~Ms~RELqqavkE  129 (130)
T pfam11300        58 TAANLMRLYEEYGSKLASPSDDD-SSNSQPLGNLTYTQALILLGVPEEEREQFIAE---NDVESMSTRELQQAVKE  129 (130)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH---HCCCCCCHHHHHHHHHC
T ss_conf             99999999999750125898654-32453243121999999927987899999997---24101139999999864


No 140
>pfam02256 Fe_hyd_SSU Iron hydrogenase small subunit. This family represents the small subunit of the Fe-only hydrogenases EC:1.18.99.1. The subunit is comprised of alternating random coil and alpha helical structures that encompasses the large subunit in a novel protein fold.
Probab=53.05  E-value=12  Score=16.99  Aligned_cols=29  Identities=14%  Similarity=0.423  Sum_probs=19.9

Q ss_pred             HHHHCC---CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             998347---63678968999999998738050
Q gi|254781051|r    8 MFSLSS---FLDGTNCCYIEDLYKSYQEDPSS   36 (957)
Q Consensus         8 ~f~~sS---FL~g~Na~YIEeLYekYL~DP~S   36 (957)
                      .|..|+   .-....-..|.+||+.|+..|.|
T Consensus        14 lY~~D~~~~~r~s~eNp~i~~lY~~~l~~p~s   45 (60)
T pfam02256        14 LYKIDKSKPLRKSHENPAVKKLYEEFLGEPLS   45 (60)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf             99975167644676798999999999858573


No 141
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=52.14  E-value=14  Score=16.57  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCC-CHHHHHHCCCEEEECCCCHHHHHH
Q ss_conf             8625753334672588764510677443657999841602012470102467784-001122034058742678899999
Q gi|254781051|r  374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYA-SDISKSIGIPIFHVNGDDPEAVIR  452 (957)
Q Consensus       374 liHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~-TDiAK~i~aPI~HVN~DdpEav~~  452 (957)
                      .+|||= ++|.=++..-+.--....-..|..+-+++=|--||-.      .+||+ .|+-+.+.-        ||+.-.+
T Consensus         6 gvHGnE-~~G~~~~~~l~~~~~~~~~~~g~~~~~~~~N~~a~~~------~~R~~d~DLNR~f~g--------~~~~~~~   70 (252)
T cd06230           6 GVHGNE-PCGVQAIRRLLAELDEGQALRGPVKLVPAANPLALEA------GQRYLDRDLNRIFPG--------DPDSGTY   70 (252)
T ss_pred             CCCCCC-HHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHH------CCCCCCCCHHHCCCC--------CCCCCCH
T ss_conf             626681-8999999999964833112588389999539999983------857899566650899--------9899998


Q ss_pred             HHHHHHHHHHHHCC--CEEEEEEEC
Q ss_conf             99999999997389--739986421
Q gi|254781051|r  453 VVRMAVSFRMKFHK--SVVIDIVCY  475 (957)
Q Consensus       453 ~~~lA~~yR~~F~k--DVvIDlv~Y  475 (957)
                      -.++|.+..+.+..  |++|||=+-
T Consensus        71 e~r~A~~l~~~l~~~~d~~iDLHs~   95 (252)
T cd06230          71 EDRLAAELCPELEGLADAVLDLHST   95 (252)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             9999999999875037899987889


No 142
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=51.42  E-value=16  Score=16.02  Aligned_cols=127  Identities=20%  Similarity=0.299  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCC
Q ss_conf             45532367777641666544555654454047888625753334672588764510677443657999841602012470
Q gi|254781051|r  340 PVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP  419 (957)
Q Consensus       340 PVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p  419 (957)
                      +++.|+|.|......- .+.++ ...--++|.+|+  ||.-.. .|+++|.+.++.  .+..+--|=|+=+|.|--..+-
T Consensus       119 ~~avG~Ala~k~l~~~-~n~~~-~~~~d~~vy~l~--GDGel~-EG~~~EA~~~Ag--~~~L~nLi~i~D~N~iqidG~t  191 (333)
T pfam00456       119 ANAVGMAIAEANLAAT-YNRPG-FDIVDHYTYVFL--GDGCLM-EGVSSEASSLAG--HLKLGNLIAFYDDNRISIDGET  191 (333)
T ss_pred             HHHHHHHHHHHHHHHH-HCCCC-CCCCCCEEEEEE--CCCCCC-CHHHHHHHHHHH--HCCCCCEEEEECCCCEECCCCC
T ss_conf             6788799999998766-36676-665574499984--643125-398999999998--7178978999745754217984


Q ss_pred             HHCCCCCCCCHHHHHHCC---CEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             102467784001122034---05874-26788999999999999999738973998642112565
Q gi|254781051|r  420 SSARSCTYASDISKSIGI---PIFHV-NGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH  480 (957)
Q Consensus       420 ~d~RSs~Y~TDiAK~i~a---PI~HV-N~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GH  480 (957)
                      ..    ....|+++-+.+   -|+.| +|.|++++..|.+-|   +..=.|-++|-.-.--=+|-
T Consensus       192 ~~----~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~A---k~~~~kPt~Ii~~TiiGkG~  249 (333)
T pfam00456       192 EI----SFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEA---KAEKDKPTLIICRTVIGYGS  249 (333)
T ss_pred             CC----CCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH---HHCCCCCEEEEEEEEEECCC
T ss_conf             53----555109999876490799946999999999999999---86589981698642151588


No 143
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=51.12  E-value=16  Score=15.99  Aligned_cols=60  Identities=22%  Similarity=0.327  Sum_probs=33.6

Q ss_pred             HHHHHHCCCCCCEEECCCCCCCCCC-------CCCCCCHHHHHHHCC---------CCCEEEEECCCHHHHHHHHHH
Q ss_conf             0257623336813543688888887-------656440578875214---------378269724889999999999
Q gi|254781051|r  716 AGEQKWLCTSNLVCLLPHGYEGQGP-------EHSSARLERFLQMCA---------ENNMYVANCTSPANYFHILRR  776 (957)
Q Consensus       716 s~e~KW~~~sglvllLPHGyeGqGP-------EHSSaRlERfLQl~a---------~~N~~V~~~ttpAq~FH~LRR  776 (957)
                      ||-+-+..+--+...||.-+.|.|-       |+ +=+.||+.|++.         -+|+.|..|.+..+.+++|.+
T Consensus        54 sGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg-~f~~eRl~qia~~~~~~~~~~L~~I~v~r~~~~~~~~~~l~~  129 (261)
T pfam08423        54 TGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEG-TFRPERIVAIAERFGLDPEEVLDNIAYARAYNTEHQMQLLLQ  129 (261)
T ss_pred             CCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHHHCCCHHHHHHHCEECCCCCHHHHHHHHHH
T ss_conf             8789999999999407096569997289993688-869899999999829997898753314168998999999999


No 144
>PRK07912 salicylate synthase MbtI; Reviewed
Probab=50.98  E-value=7.8  Score=18.44  Aligned_cols=33  Identities=9%  Similarity=0.068  Sum_probs=18.8

Q ss_pred             CHHHHHHHHHHHHCCCC-------CCCEEEECCCHHHCCC
Q ss_conf             89999999999743534-------8868985660221080
Q gi|254781051|r  766 SPANYFHILRRQIYDRS-------SRPLIMMAPKSLLRHK  798 (957)
Q Consensus       766 tpAq~FH~LRRQ~~r~~-------rkPLiv~tPKsLLR~~  798 (957)
                      -|-+.|..||+.--.+|       -.-+|=+||..|++..
T Consensus       218 d~~~~Y~~lR~~Npspy~f~l~~~~~~~iGaSPE~lv~v~  257 (449)
T PRK07912        218 DFPSTYRLGRRHNTPVRSFLLRLGGIRALGYSPELVTAVR  257 (449)
T ss_pred             CHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHHEEEC
T ss_conf             9899999973569995089997798389984708957980


No 145
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101   Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=50.83  E-value=7.4  Score=18.63  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=11.0

Q ss_pred             EEEEEEECCCCCCCCCHHHHH
Q ss_conf             478886257533346725887
Q gi|254781051|r  370 VLPLIIHGDAAFAGQGIVSET  390 (957)
Q Consensus       370 vlpiliHGDAAfaGQGVV~Et  390 (957)
                      |-.+-.=||..|.|||+++=.
T Consensus       471 i~gLYCVGDS~FPGQGl~AVA  491 (506)
T TIGR02730       471 IPGLYCVGDSCFPGQGLNAVA  491 (506)
T ss_pred             CCCCEEECCCCCCCCCHHHHH
T ss_conf             576155046578875336766


No 146
>TIGR01820 TrpE-arch anthranilate synthase component I; InterPro: IPR010116   This model represents an archaeal clade of anthranilate synthase component I enzymes. This enzyme (4.1.3.27 from EC) is responsible for the first step of tryptophan biosynthesis from chorismate. The Sulfolobus enzyme has been reported to be part of a gene cluster for Trp biosynthesis . ; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=50.63  E-value=9.7  Score=17.73  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=24.6

Q ss_pred             CCEEECCCCCCCCCCCHHHHHHHHHHH----HCCCEEE
Q ss_conf             715725665787777899999999984----0643027
Q gi|254781051|r  146 DRKICMKGVLGLESATIPEIVDVLSHL----YCSNIGV  179 (957)
Q Consensus       146 d~~f~~~~~~g~~~~tL~eIi~~L~~t----YCgsIGv  179 (957)
                      .-.|+.|++-|.++.---|||+.|+++    |-|.+||
T Consensus       411 ~A~FPAGTlSGAPK~RAMEII~~LE~~~RG~YgGgVGY  448 (508)
T TIGR01820       411 KATFPAGTLSGAPKIRAMEIIDELEKEPRGVYGGGVGY  448 (508)
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf             21347765479853678888888607888732231321


No 147
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689   Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=50.54  E-value=4.9  Score=19.98  Aligned_cols=50  Identities=14%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             HHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHC
Q ss_conf             4033622225646589999999999987379107998067655268999885379899999855
Q gi|254781051|r  231 KYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFK  294 (957)
Q Consensus       231 Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~  294 (957)
                      +=++--||==-|==++.|+=|         .+..+|=-|.|+     .+.-|..=+++-|-++-
T Consensus       247 n~~AWQRFLP~GPiAlLPl~D---------~~s~lVWSts~e-----~a~~L~~Lp~e~FV~~l  296 (481)
T TIGR01989       247 NEVAWQRFLPTGPIALLPLSD---------NLSTLVWSTSPE-----EAKRLKSLPPEEFVDAL  296 (481)
T ss_pred             CCEEEECCCCCCCEEECCCCC---------CCCCCEEECCHH-----HHHHHCCCCCHHHHHHH
T ss_conf             873541337876624457665---------336541216779-----99984258835789999


No 148
>KOG4748 consensus
Probab=50.25  E-value=12  Score=17.11  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH---HHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999999973897399-8642112565643542235578888867189989999---999864489898999999999
Q gi|254781051|r  453 VVRMAVSFRMKFHKSVVI-DIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLY---ADSLMKNQVISKQELQSLANN  528 (957)
Q Consensus       453 ~~~lA~~yR~~F~kDVvI-Dlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y---~~~Li~~g~it~~e~~~~~~~  528 (957)
                      +.+=-.+|-.+.+=.+++ ++-.++|+  -|.-++=---|..-+..++||..-=|+   .+.||-+-.++-      .+.
T Consensus       127 ~ikNridYA~rHgy~~~~~~~~~~~~~--~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL------~~~  198 (364)
T KOG4748         127 SIKNRIDYARRHGYEFEYKNATLDKRY--HELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSL------QDH  198 (364)
T ss_pred             HHHHHHHHHHHHCCEEEEEECCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCH------HHH
T ss_conf             887089999984975999744123222--456644577499999998789971788851641320733022------677


Q ss_pred             HHH--HHHHHHHH--HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH------H-HHHHHHHH
Q ss_conf             999--97756665--4125876566665686266677899999999887436899862056778------8-89989987
Q gi|254781051|r  529 WHK--YLEAEYKE--SESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVE------R-LMANRQKM  597 (957)
Q Consensus       529 ~~~--~l~~~~~~--~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~------k-~~~~R~~~  597 (957)
                      ..+  .|+...-.  .+.+.|-.     ...... -....+.+..+.--+..=+.|++.-.-+-      | +++.--+.
T Consensus       199 ilk~~~L~~~l~~nd~~~~~~~n-----~~~~~~-~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp  272 (364)
T KOG4748         199 ILKPENLVTHLLRNDQKSINPLN-----IFRLRP-RTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDP  272 (364)
T ss_pred             HCCHHHHHHHHCCCCCCCCCCCC-----CCCCCC-CCCCCCCHHHHCEECCCCCCCCCCCCEEEECCCCCHHHHHHCCCH
T ss_conf             53878788763346666326678-----622266-664312666624643557787343434885373201677742577


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             334356421147898889886358315
Q gi|254781051|r  598 IETGKGIDWSMAESLAFGSLCYEGYKV  624 (957)
Q Consensus       598 ~~~~~~iDW~~AE~LA~~SLl~eG~~V  624 (957)
                      +--+  ..|+.+|.=|.+-++.-..-|
T Consensus       273 ~l~~--~~~~~~Eq~al~~~~e~h~~l  297 (364)
T KOG4748         273 LLYE--LLWGQKEQDALGHFLENHPQL  297 (364)
T ss_pred             HHHH--HCCCHHHHHHHHHHHHHCHHH
T ss_conf             8876--130267899998988606425


No 149
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase; InterPro: IPR012813    Members of this family are mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC). It acts sequentially after mannosyl-3-phosphoglycerate synthase (2.4.1.217 from EC) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=48.76  E-value=18  Score=15.73  Aligned_cols=87  Identities=21%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             CCCCCCCHHHHHH--------HHHH-HHCCCEEEEEECCCCHHHHHHH-------------HHHHCCCCCCCC-CCHHHH
Q ss_conf             7877778999999--------9998-4064302777248998999999-------------998414577888-798899
Q gi|254781051|r  155 LGLESATIPEIVD--------VLSH-LYCSNIGVEFMHIVDSIERDWV-------------RNTIEDYDFSSN-FSKEEQ  211 (957)
Q Consensus       155 ~g~~~~tL~eIi~--------~L~~-tYCgsIGvEymHI~d~eer~Wl-------------q~riE~~~~~~~-~s~eeK  211 (957)
                      +|.....+|.+++        .+++ --||++-+-+-|=.+.|+-.=|             |+.-|..-.... -+-+.-
T Consensus        95 LG~~~~~IR~~L~~alaeacte~E~se~~Gn~~~~~yg~~t~Eev~~lTgLp~e~a~lA~~REYsETi~~~~~Padw~~~  174 (248)
T TIGR02461        95 LGKPVAEIRAALKSALAEACTEIEASEEAGNLSIKGYGDMTAEEVARLTGLPREAARLAKRREYSETIFLESRPADWERL  174 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf             36767899999899999999998744431450111227888889998628998899998402752489873888656678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEECCC
Q ss_conf             999999999998999998640336222256
Q gi|254781051|r  212 RDILDKLVRAEGFEKFIDIKYKGAKRFGAD  241 (957)
Q Consensus       212 ~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLE  241 (957)
                      -.||..-+++.+|+-+...+|-.+---+-+
T Consensus       175 ~~~L~~~l~~~GL~~~~GgRFy~v~g~~~D  204 (248)
T TIGR02461       175 EAILVTALRARGLEYTHGGRFYTVIGAGSD  204 (248)
T ss_pred             HHHHHHHHHHCCCEEEECCCEEEEEECCCC
T ss_conf             899999997479369755800045523788


No 150
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690   This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=47.46  E-value=9.9  Score=17.65  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=17.6

Q ss_pred             CCCCHHHHHHHCCCCCEEEEEC
Q ss_conf             6440578875214378269724
Q gi|254781051|r  743 SSARLERFLQMCAENNMYVANC  764 (957)
Q Consensus       743 SSaRlERfLQl~a~~N~~V~~~  764 (957)
                      ++.-+||||++|..+-+.|-+.
T Consensus        14 ~G~~iErFlN~~~~~gi~vwdv   35 (406)
T TIGR02876        14 EGEDIERFLNLCWRNGILVWDV   35 (406)
T ss_pred             EECCCHHHHHHHHHCCEEEEEE
T ss_conf             8167027888988787579987


No 151
>KOG0182 consensus
Probab=46.80  E-value=14  Score=16.60  Aligned_cols=89  Identities=24%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             HHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             87645106774436579998416020124701024677840011220340587426788999999999999999738973
Q gi|254781051|r  389 ETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSV  468 (957)
Q Consensus       389 Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDV  468 (957)
                      +..|-.+|+.-.+-|-=-+||--|=--+-.-.|+++-.+---|.|-+++-|--.-||.--.|-+|---|.+||.+|+-|+
T Consensus        30 kAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyem  109 (246)
T KOG0182          30 KAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEM  109 (246)
T ss_pred             HHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77522797158873786699997354871003644222789840541179952775578999999989875256428878


Q ss_pred             EEEEEECCC
Q ss_conf             998642112
Q gi|254781051|r  469 VIDIVCYRR  477 (957)
Q Consensus       469 vIDlv~YRr  477 (957)
                      -.|++|-|-
T Consensus       110 p~DiL~k~~  118 (246)
T KOG0182         110 PCDILAKRM  118 (246)
T ss_pred             CHHHHHHHH
T ss_conf             788999988


No 152
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=46.56  E-value=6.9  Score=18.86  Aligned_cols=49  Identities=22%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             CCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCH
Q ss_conf             5348868985660221080126887893799860351577643344454445795457689986885
Q gi|254781051|r  780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGK  846 (957)
Q Consensus       780 r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGK  846 (957)
                      +.+|++|++|-.-   =+.-.+++++||++- .|.+|+..              ...|+-||+-||.
T Consensus        31 ~sh~~SlL~lpdg---v~~W~v~~~~~Lt~e-~f~~vl~~--------------a~~~EilliGTG~   79 (127)
T COG3737          31 MSHRGSLLVLPDG---VCDWEVATLSDLTPE-DFERVLAE--------------APDVEILLIGTGA   79 (127)
T ss_pred             CCCCCCEEEECCC---CCCCCCCCHHHCCHH-HHHHHHHC--------------CCCCEEEEEECCC
T ss_conf             0515657881696---544665675667999-99998731--------------7885699982585


No 153
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=46.18  E-value=12  Score=17.15  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             HHCCCCCCCCHHHHHHCCCEEEECC-CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf             1024677840011220340587426-78899999999999999973897399864211256
Q gi|254781051|r  420 SSARSCTYASDISKSIGIPIFHVNG-DDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFG  479 (957)
Q Consensus       420 ~d~RSs~Y~TDiAK~i~aPI~HVN~-DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~G  479 (957)
                      .|+--+++.--+.|.+.     .++ ||-|++       .+-|+. +-||.||+-+|-+-+
T Consensus       302 ~dal~~rI~a~~~~~~~-----~~~~dd~e~a-------~~I~~d-~IdILvDl~g~T~d~  349 (620)
T COG3914         302 TDALQERISAAVEKWYP-----IGRMDDAEIA-------NAIRTD-GIDILVDLDGHTVDT  349 (620)
T ss_pred             CHHHHHHHHHHHHHEEC-----CCCCCHHHHH-------HHHHHC-CCEEEEECCCCEECC
T ss_conf             31678888876531410-----5886889999-------998725-870999656721034


No 154
>KOG4450 consensus
Probab=46.04  E-value=5.7  Score=19.50  Aligned_cols=21  Identities=38%  Similarity=0.640  Sum_probs=16.0

Q ss_pred             CCEEEEEEEECCCCCCCCCHH
Q ss_conf             540478886257533346725
Q gi|254781051|r  367 RSRVLPLIIHGDAAFAGQGIV  387 (957)
Q Consensus       367 ~~~vlpiliHGDAAfaGQGVV  387 (957)
                      -+.+|-=+|||||+|.|+|--
T Consensus        21 Nh~~L~d~~~g~A~F~gr~~T   41 (168)
T KOG4450          21 NHFLLEDLINGDAVFIGRGTT   41 (168)
T ss_pred             CCHHHHHCCCCCEEEEEECEE
T ss_conf             743665236885589971101


No 155
>pfam01074 Glyco_hydro_38 Glycosyl hydrolases family 38 N-terminal domain. Glycosyl hydrolases are key enzymes of carbohydrate metabolism.
Probab=45.91  E-value=20  Score=15.42  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEECCCCCC--CCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHC
Q ss_conf             2565542025762333681354368888--8887656440578875214378269724889999999999743
Q gi|254781051|r  709 ILDQFITAGEQKWLCTSNLVCLLPHGYE--GQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIY  779 (957)
Q Consensus       709 iiDqfiss~e~KW~~~sglvllLPHGye--GqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~  779 (957)
                      -++.++..-...+.....-.+|+|-|++  |.||  +-.=+|+.-.+-.....--+..|||+.||..|+.+..
T Consensus       188 ~~~~l~~~~~~~~~~~~~~~~l~~~G~gd~~~~~--~~~lie~i~~~~~~~~~~~i~~st~~~yf~~l~~~~~  258 (269)
T pfam01074       188 RADDLLDQAKKYADKTRTNHVLWPFGDGDGGGGP--TDELLEYINRWNELPGLPKVQFGTPSDYFDALEEATW  258 (269)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCC
T ss_conf             7999999999999727799589961049999881--7999999997422689847997999999999986359


No 156
>KOG0630 consensus
Probab=45.14  E-value=11  Score=17.35  Aligned_cols=22  Identities=14%  Similarity=-0.007  Sum_probs=11.2

Q ss_pred             CCCHHHHHHHHHCCCHHHHHHH
Q ss_conf             6552689998853798999998
Q gi|254781051|r  271 HRGRLNVLSQIMNKLPRSIFYE  292 (957)
Q Consensus       271 HRGRLNVL~Nvl~Kp~~~iF~E  292 (957)
                      |--||.-++.-+|-+.+.|.-.
T Consensus       241 h~~l~hYaarefGIa~~aI~~~  262 (838)
T KOG0630         241 HMDLLHYAAREFGIADEAIKPI  262 (838)
T ss_pred             CHHHHHHHHHHHCCCHHHEECC
T ss_conf             4788999998729841211202


No 157
>COG3394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.34  E-value=6.2  Score=19.21  Aligned_cols=13  Identities=15%  Similarity=0.003  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             8999999998414
Q gi|254781051|r  187 SIERDWVRNTIED  199 (957)
Q Consensus       187 ~eer~Wlq~riE~  199 (957)
                      |...-|+..-.+.
T Consensus       134 P~I~p~v~rlA~e  146 (257)
T COG3394         134 PQIAPIVARLAEE  146 (257)
T ss_pred             CHHHHHHHHHHHC
T ss_conf             1478999999751


No 158
>TIGR02134 transald_staph transaldolase; InterPro: IPR011861    This small family of proteins belong to the transaldolases. Coxiella and Staphylococcus lack members of the known transaldolase families and appear to require a transaldolase activity for completion of the pentose phosphate pathway..
Probab=43.42  E-value=7.6  Score=18.52  Aligned_cols=115  Identities=22%  Similarity=0.277  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCC---CCCCCC----HHHHHHCCCE-EEECCCCHHHHHHHHHH
Q ss_conf             725887645106774436579998416020124701024---677840----0112203405-87426788999999999
Q gi|254781051|r  385 GIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSAR---SCTYAS----DISKSIGIPI-FHVNGDDPEAVIRVVRM  456 (957)
Q Consensus       385 GVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~R---Ss~Y~T----DiAK~i~aPI-~HVN~DdpEav~~~~~l  456 (957)
                      |-+-|+|--.--.+|=            =||||||.--|   =+-|-.    -+|..-++|| |-|=|||-|.-=.    
T Consensus        12 GA~lEeM~k~~~~~~v------------~GFTTNPsLM~kAGi~dY~aFA~ealaqItd~piSFEVFADdL~~MEk----   75 (237)
T TIGR02134        12 GADLEEMVKALKNKLV------------KGFTTNPSLMKKAGISDYKAFAKEALAQITDLPISFEVFADDLEEMEK----   75 (237)
T ss_pred             CCCHHHHHHHHCCCCE------------EEEECCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH----
T ss_conf             4118999998628930------------000178666744486645889999997347996245554031656899----


Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99999973897399864211256564354223557888886718998999999986448989899999999999
Q gi|254781051|r  457 AVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH  530 (957)
Q Consensus       457 A~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~  530 (957)
                      -++|=..|+.-|+|-+=-----|       .||-|+.-+.=++-=        +|-=--+.|-++++++.+.+.
T Consensus        76 eA~~ias~GnNV~vKIPvtntkG-------esT~PlIqkLSadgi--------~LNvTA~~TieQv~~v~~~~t  134 (237)
T TIGR02134        76 EAEKIASYGNNVYVKIPVTNTKG-------ESTIPLIQKLSADGI--------KLNVTAVYTIEQVKKVVEALT  134 (237)
T ss_pred             HHHHHHHHCCCEEEEEEEECCCC-------CCCCHHHHHHHHCCC--------EEEEEEECCHHHHHHHHHHHH
T ss_conf             99999870793278841241889-------515307866402486--------675435402588999999874


No 159
>KOG2243 consensus
Probab=43.22  E-value=12  Score=17.03  Aligned_cols=18  Identities=28%  Similarity=0.412  Sum_probs=11.4

Q ss_pred             HHHHHHHCCCEEEEECCC
Q ss_conf             889886358315785010
Q gi|254781051|r  613 AFGSLCYEGYKVRLSGQD  630 (957)
Q Consensus       613 A~~SLl~eG~~VRlsGQD  630 (957)
                      |.-|++--||++--+.||
T Consensus      1059 avrt~~gygynie~~dqd 1076 (5019)
T KOG2243        1059 AVRTFLGYGYNIEAPDQD 1076 (5019)
T ss_pred             HHHHHHCCCCCCCCCCHH
T ss_conf             999984466667898626


No 160
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=42.91  E-value=22  Score=15.10  Aligned_cols=67  Identities=25%  Similarity=0.443  Sum_probs=39.1

Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHCCC-----------------EEEEEEECCCCCCCCCCCCCCC-CHHHHHHHHHCC
Q ss_conf             8742678899999999999999973897-----------------3998642112565643542235-578888867189
Q gi|254781051|r  440 FHVNGDDPEAVIRVVRMAVSFRMKFHKS-----------------VVIDIVCYRRFGHNEGDEPSFT-QPMMYKTIRSHK  501 (957)
Q Consensus       440 ~HVN~DdpEav~~~~~lA~~yR~~F~kD-----------------VvIDlv~YRr~GHNE~DeP~fT-QP~mY~~I~~hp  501 (957)
                      +|+.+-.|++|+.      .|+.+|++|                 .|+-+.| |    ++.| |.-+ .-.||+.     
T Consensus       137 I~i~~~s~~~V~~------AY~~Qf~~D~~~FL~~Ra~Elv~GG~mvl~~~G-r----~~~d-~~~~~~~~~~~l-----  199 (331)
T pfam03492       137 IYISGASPEEVYK------AYLDQFKKDFSLFLRARAEELVSGGLMVLTFLG-R----PSVD-PSETECGIFWDL-----  199 (331)
T ss_pred             EEECCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-C----CCCC-CCCCCCCHHHHH-----
T ss_conf             6971699889999------999999999999999889985468659999605-6----8998-665664439999-----


Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             989999999864489898999999
Q gi|254781051|r  502 SVLQLYADSLMKNQVISKQELQSL  525 (957)
Q Consensus       502 ~v~~~Y~~~Li~~g~it~~e~~~~  525 (957)
                        ...=-..|+++|+|++++++.+
T Consensus       200 --l~~aL~dlv~eGlI~eekldsF  221 (331)
T pfam03492       200 --LGDALNDLVSEGLIEEEKLDSF  221 (331)
T ss_pred             --HHHHHHHHHHCCCCCHHHHHHC
T ss_conf             --9999999998599679998324


No 161
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049   This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=42.76  E-value=22  Score=15.08  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=31.9

Q ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98999999986448989899999999999997756665
Q gi|254781051|r  502 SVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE  539 (957)
Q Consensus       502 ~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~  539 (957)
                      ..-.-|+.-|.+.|+||+||..++.+.-.+..++..+.
T Consensus        33 ~~~~AH~~~L~k~GiLt~Ee~~~l~~gL~~l~~e~~~~   70 (469)
T TIGR00838        33 EGSIAHTKMLKKAGILTEEEAAKLIEGLNELKEEVREG   70 (469)
T ss_pred             CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             33599999987527988889999999999999988608


No 162
>TIGR02743 TraW type-F conjugative transfer system protein TraW; InterPro: IPR014114   This entry represents TraW, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm , ..
Probab=42.04  E-value=22  Score=15.01  Aligned_cols=33  Identities=6%  Similarity=0.209  Sum_probs=18.9

Q ss_pred             CCHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHH
Q ss_conf             99899999999841457--7888798899999999
Q gi|254781051|r  185 VDSIERDWVRNTIEDYD--FSSNFSKEEQRDILDK  217 (957)
Q Consensus       185 ~d~eer~Wlq~riE~~~--~~~~~s~eeK~~iL~~  217 (957)
                      .|+++..|-+...+...  .+.-++.-.=+.+-++
T Consensus       143 dD~~Q~~wA~~~~~~~~G~~K~ILt~Gs~~el~~~  177 (217)
T TIGR02743       143 DDPKQLAWAQQLLAQLPGEVKWILTGGSVKELEKR  177 (217)
T ss_pred             CCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHH
T ss_conf             88899999998732038983088717897999985


No 163
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939    This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=41.55  E-value=16  Score=16.01  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=15.4

Q ss_pred             HHHHHHHCCCC---------CEEEEECCC
Q ss_conf             57887521437---------826972488
Q gi|254781051|r  747 LERFLQMCAEN---------NMYVANCTS  766 (957)
Q Consensus       747 lERfLQl~a~~---------N~~V~~~tt  766 (957)
                      +|||+|+|.++         ||.|-+|..
T Consensus        54 ~ER~~q~~~~~~~D~e~~~~~~iv~~~~~   82 (223)
T TIGR02237        54 PERFKQIAEDRALDPERVLSNVIVFEVFD   82 (223)
T ss_pred             HHHHHHHHHCCCCCHHHHHCCEEEECCCC
T ss_conf             89999986305889888841535523535


No 164
>PRK10696 C32 tRNA thiolase; Provisional
Probab=41.46  E-value=11  Score=17.35  Aligned_cols=121  Identities=16%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHCC----
Q ss_conf             4064302777248998999999998414577888798899999999999998-------------99999864033----
Q gi|254781051|r  172 LYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEG-------------FEKFIDIKYKG----  234 (957)
Q Consensus       172 tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~-------------FE~FL~~Kf~g----  234 (957)
                      -||.++|++|-.+ ..+.-.+..+.+....+.-.+...-|+.+|.+..+..|             .|.||=.=|-|    
T Consensus        91 ~yl~~lGvp~~i~-~~d~~~iv~~~~~egks~CslCsRlRRg~Ly~~A~e~G~nKIALGHH~DDi~ETfLMNlf~gG~Lk  169 (311)
T PRK10696         91 EYLEKLGVEYKIV-EENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMK  169 (311)
T ss_pred             HHHHHCCCCCEEE-EEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9999749970799-840767998754368863789999999999999998699879860650558999999999668763


Q ss_pred             -C--CEECCCCHHHHHHHH-----HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf             -6--222256465899999-----999999873791079980676552689998853798999998558874
Q gi|254781051|r  235 -A--KRFGADGSEVIIPAI-----EEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGP  298 (957)
Q Consensus       235 -~--KRFsLEG~EslIP~L-----~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~  298 (957)
                       .  |-.+=+|.-.+|==|     ..|++.|...+.-=|---.  =|   --.|+-++..+.|..+.+-..|
T Consensus       170 tM~Pkl~~d~g~~~VIRPL~y~~E~di~~~a~~~~fPiIpcnl--cg---sq~~lqR~~ik~ml~~~~~~~p  236 (311)
T PRK10696        170 GMPPKLMSDDGKHIVIRPLAYCREKDIERFADAKAFPIIPCNL--CG---SQPNLQRQVIADMLRDWDKRYP  236 (311)
T ss_pred             CCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCCEECCCC--CC---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf             6797667489975998304201599999999975998741667--78---8367899999999999999888


No 165
>PTZ00124 adenosine deaminase; Provisional
Probab=41.06  E-value=23  Score=14.90  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEC---------CCEECCCCCHHCCCCCCCCHH-----HHHH
Q ss_conf             47888625753334672588764510677443657999841---------602012470102467784001-----1220
Q gi|254781051|r  370 VLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIIN---------NQIGFTTNPSSARSCTYASDI-----SKSI  435 (957)
Q Consensus       370 vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvN---------NQIGFTT~p~d~RSs~Y~TDi-----AK~i  435 (957)
                      -+++.+|-.=+-.-++|....-.+-.|..=++|=-++++=+         ++|++|.-|...--+..+.++     .+++
T Consensus       219 Gl~~T~HAGE~~~p~~i~~v~~ai~~l~a~RIGHGv~~~~Dp~L~~~l~e~~I~LEvCPtSNv~t~~v~~~~~HPi~~l~  298 (362)
T PTZ00124        219 GVNLSVHAGEDVTPPNLNELYAAILDLGVKRIGHGIRVAESQELIDRVKEKDILLEVCPISNVLLNNSKSMDTHPIRKLY  298 (362)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99543556755785459999999998097043575340779899999986595489867655334566983217199999


Q ss_pred             CCCE-EEECCCCHHHHHHHHHHHHHHH
Q ss_conf             3405-8742678899999999999999
Q gi|254781051|r  436 GIPI-FHVNGDDPEAVIRVVRMAVSFR  461 (957)
Q Consensus       436 ~aPI-~HVN~DdpEav~~~~~lA~~yR  461 (957)
                      ++=| +.+|-|||-  ++-+.|.-||.
T Consensus       299 ~~G~~vtiNTDDp~--vf~t~L~~Ey~  323 (362)
T PTZ00124        299 DAGVKVSVNSDDPG--MFLTNIHDEYE  323 (362)
T ss_pred             HCCCEEEEECCCCC--CCCCCHHHHHH
T ss_conf             78996999489930--20898899999


No 166
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820    This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=40.24  E-value=18  Score=15.70  Aligned_cols=140  Identities=20%  Similarity=0.320  Sum_probs=78.2

Q ss_pred             CCCCCCCEEEEEEECCCEEEEEECC----------------CCCCCHHCCHHH-HHHHHHHHHHHCCCCCCC--------
Q ss_conf             5100150268898359618999717----------------877310004455-323677776416665445--------
Q gi|254781051|r  306 DVKYHLGLCCNRQICGKDVKLLLQS----------------NPSHLEFVDPVV-IGSVRARQDLKAGIVGEK--------  360 (957)
Q Consensus       306 DVKYHLG~s~~~~~~g~~v~lsL~~----------------NPSHLEaVnPVv-~G~~RAkQd~~~d~~~~~--------  360 (957)
                      |=.=|.|+=.|   .+|++=-|||.                ||.==|-+|=|| .|+.++++-.  |..=..        
T Consensus       543 ~~~~~~G~L~d---~~KPiiFsMARLDrvKNlTGLvE~yg~s~~Lr~l~NLv~VaG~~~~~~S~--DrEE~~Ei~kmh~l  617 (790)
T TIGR02470       543 DNDEHIGYLKD---PNKPIIFSMARLDRVKNLTGLVELYGRSKKLRELANLVVVAGKLDAKESK--DREEQAEIEKMHNL  617 (790)
T ss_pred             CCCCEEEEECC---CCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCEEEEECCCCCCCCC--CHHHHHHHHHHHHH
T ss_conf             87300787207---68782663063001013477884850484478166888880656864467--87899999999998


Q ss_pred             --CCCCCCCCEEEE-------------EEEECCCCCCCCCHHHHHHHH-------HCCCCCCC--CCEEEEEECCCEECC
Q ss_conf             --556544540478-------------886257533346725887645-------10677443--657999841602012
Q gi|254781051|r  361 --SISLVERSRVLP-------------LIIHGDAAFAGQGIVSETFGL-------SGLSGYTV--AGNIHLIINNQIGFT  416 (957)
Q Consensus       361 --~~~~~~~~~vlp-------------iliHGDAAfaGQGVV~Etl~l-------s~l~gY~t--GGTiHiVvNNQIGFT  416 (957)
                        .-..+..=+=+.             +.-=-=.+|. |==-||.+.|       |.||-|.|  ||..=||+|+.=||-
T Consensus       618 id~Y~L~G~iRWi~~q~~~~~~GElYR~IAD~~GiFV-QPA~yEAFGLTv~EAM~cGLPTFAT~~GGP~EII~dgvsGFh  696 (790)
T TIGR02470       618 IDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFV-QPALYEAFGLTVVEAMTCGLPTFATRFGGPLEIIQDGVSGFH  696 (790)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEE-CCCHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCE
T ss_conf             8864669716770000685314646764425775033-330444532579998630112467626896368772883542


Q ss_pred             CCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             470102467784001122034058742678899999999999
Q gi|254781051|r  417 TNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAV  458 (957)
Q Consensus       417 T~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~  458 (957)
                      -||.+++.+  +.-|+..++.     +-+||..=.++.+-|+
T Consensus       697 IdP~~~~~~--A~~l~~Ff~k-----C~~dP~~W~~iS~~gl  731 (790)
T TIGR02470       697 IDPYHGEEA--AEKLVDFFEK-----CDEDPSYWQKISQGGL  731 (790)
T ss_pred             ECCCCHHHH--HHHHHHHHHH-----HCCCHHHHHHHHHHHH
T ss_conf             267558999--9999999986-----2038368999999886


No 167
>pfam05489 Phage_tail_X Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.
Probab=40.12  E-value=2.9  Score=21.66  Aligned_cols=14  Identities=29%  Similarity=0.880  Sum_probs=8.3

Q ss_pred             EEEEEECCCCCCCC
Q ss_conf             99864211256564
Q gi|254781051|r  469 VIDIVCYRRFGHNE  482 (957)
Q Consensus       469 vIDlv~YRr~GHNE  482 (957)
                      .+|.+|||.||+..
T Consensus        10 tvD~ic~r~yGrt~   23 (60)
T pfam05489        10 TLDALCWRYYGRTL   23 (60)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             59999999977832


No 168
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=39.30  E-value=24  Score=14.71  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHH-HHHHHHHHHHH
Q ss_conf             33467258876451067744365799984160201247010246778400112203405874267889-99999999999
Q gi|254781051|r  381 FAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPE-AVIRVVRMAVS  459 (957)
Q Consensus       381 faGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpE-av~~~~~lA~~  459 (957)
                      .||.|-.++.+-=+.-.++-.+-...+|.|            |...|+-+.|+-.+.|.++++-.+-+ -..+-..|+..
T Consensus         7 aSG~GSNlqaiida~~~~~~~a~i~~Visd------------~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~   74 (200)
T COG0299           7 ASGNGSNLQAIIDAIKGGKLDAEIVAVISD------------KADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEA   74 (200)
T ss_pred             EECCCCCHHHHHHHHHCCCCCCEEEEEEEC------------CCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf             947965599999987648988179999957------------97778999999849988974445678778999999999


Q ss_pred             HHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             9997389739986421125656435422355788888671899899999
Q gi|254781051|r  460 FRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYA  508 (957)
Q Consensus       460 yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~  508 (957)
                      .+ +++-|+|+ |-||=|-     =.|.|++..-.+.|.-||+.+-.|.
T Consensus        75 l~-~~~~dlvv-LAGyMrI-----L~~~fl~~~~grIlNIHPSLLP~f~  116 (200)
T COG0299          75 LD-EYGPDLVV-LAGYMRI-----LGPEFLSRFEGRILNIHPSLLPAFP  116 (200)
T ss_pred             HH-HCCCCEEE-ECCHHHH-----CCHHHHHHHHCCEEECCCCCCCCCC
T ss_conf             98-52999999-8664777-----5999999732651741753135899


No 169
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=39.09  E-value=24  Score=14.69  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             68998688578999999997699--8689998401486828999999853799839980678531784578997699998
Q gi|254781051|r  838 RRVILCTGKVYYDLLDNRDMRNI--ADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVL  915 (957)
Q Consensus       838 ~rvi~csGKvyydL~~~r~~~~~--~~vaivRiEqLyPfP~~~l~~~l~~y~~~e~vW~QEEp~N~GaW~~v~~rl~~~l  915 (957)
                      .=.|+|+|-..+.-+++.+....  -++.+|-+-.+.||+.+.|.+.++++.+  ++=+.|-..+.|-=+.+...+.+-.
T Consensus        11 di~ii~~G~~~~~al~aa~~L~~~gi~~~vid~~~ikPlD~~~i~~~~~~~~~--vvtvEe~~~~gG~Gs~i~~~l~e~~   88 (124)
T pfam02780        11 DVTIVAYGSMVHEALEAAEELAAEGISAEVIDLRTVKPLDEDTILESVKKTGR--LVVVEEAVPRGGFGAEVAAALAEEG   88 (124)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf             79999847899999999999877598569974236436678999998733486--8998468867868999999999856


Q ss_pred             HHCCCCCCEEEEEECCCCCCCC
Q ss_conf             7505677601897536646723
Q gi|254781051|r  916 HSIGADYSRVRYVGRLPSASTA  937 (957)
Q Consensus       916 ~~~~~~~~~~~y~gR~~~aspA  937 (957)
                      .  ..-..++.-+|-|-...|.
T Consensus        89 ~--~~l~~~v~~ig~pd~~ip~  108 (124)
T pfam02780        89 F--DYLDAPVLRVGGPDTPIPH  108 (124)
T ss_pred             H--HHCCCCEEEECCCCCCCCC
T ss_conf             6--5449996997479898999


No 170
>PRK10150 beta-D-glucuronidase; Provisional
Probab=39.05  E-value=25  Score=14.68  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=27.8

Q ss_pred             HHHHHHCCCCCEEEEEC-------------------------------CCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             78875214378269724-------------------------------88999999999974353488689856
Q gi|254781051|r  748 ERFLQMCAENNMYVANC-------------------------------TSPANYFHILRRQIYDRSSRPLIMMA  790 (957)
Q Consensus       748 ERfLQl~a~~N~~V~~~-------------------------------ttpAq~FH~LRRQ~~r~~rkPLiv~t  790 (957)
                      +|||+||++--|-|..-                               .+-..+-..||+-+.|++--|=|||=
T Consensus       342 ~~~~~lcD~lGllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~emi~rd~NHPSIi~W  415 (605)
T PRK10150        342 EEMLDLADRHGIVVIDETPAVGLNLSFGIGFEAGNKPKETWSEEAVNGETQQAHLQAIRELIARDKNHPSVVMW  415 (605)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             99999998669899992344354433355533466557543413379889999999999999854699749998


No 171
>KOG1000 consensus
Probab=38.95  E-value=18  Score=15.72  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=7.6

Q ss_pred             CHHHHHHHCCCCCEEEEECCCH
Q ss_conf             0578875214378269724889
Q gi|254781051|r  746 RLERFLQMCAENNMYVANCTSP  767 (957)
Q Consensus       746 RlERfLQl~a~~N~~V~~~ttp  767 (957)
                      |.-|-=|-++-+=...|---|.
T Consensus       584 RaHRiGQkssV~v~ylvAKgT~  605 (689)
T KOG1000         584 RAHRIGQKSSVFVQYLVAKGTA  605 (689)
T ss_pred             HHHHCCCCCEEEEEEEEECCCH
T ss_conf             5664056651138999954845


No 172
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=38.65  E-value=25  Score=14.64  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCC--CHHHHHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             3334672588764510677443657999841602012470102467784--00112203405874267889999999999
Q gi|254781051|r  380 AFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYA--SDISKSIGIPIFHVNGDDPEAVIRVVRMA  457 (957)
Q Consensus       380 AfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~--TDiAK~i~aPI~HVN~DdpEav~~~~~lA  457 (957)
                      |-+|||+..=.=+|+...|-.++..+|++.-  -|=.|    += +.++  +|+--+.+++++-.-..++..|..-+..|
T Consensus        65 aTs~~Gl~lm~e~l~~aag~~~P~V~~v~~R--~~~~~----gl-~~~~eq~D~~~~rd~g~~vl~~~~~QEa~d~~~~A  137 (230)
T pfam01855        65 ATSGQGLLLMIENLGKAAGEELPIVIHVVAR--AGPSP----GL-SIFGDQGDLMAARDTGWIVLAPENVQEAFDLALVA  137 (230)
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCC----CC-CCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHH
T ss_conf             0267527675678889987368859999966--78998----77-66651378999985690899469999999999999


Q ss_pred             HHHHHHHCCCEEEEEEECCC-CCCCCCCCC
Q ss_conf             99999738973998642112-565643542
Q gi|254781051|r  458 VSFRMKFHKSVVIDIVCYRR-FGHNEGDEP  486 (957)
Q Consensus       458 ~~yR~~F~kDVvIDlv~YRr-~GHNE~DeP  486 (957)
                      ++.-.+|+--|++-.=+||- |.-.-.+-|
T Consensus       138 ~~lae~~~~Pv~v~~Dgf~~SH~~~~v~~~  167 (230)
T pfam01855       138 FNLAEKVRTPVIHLFDGFRTSHEYEKVELP  167 (230)
T ss_pred             HHHHHHHCCCEEEEECCCEEECCCCEEECC
T ss_conf             999999889989982566134426405469


No 173
>pfam05637 Glyco_transf_34 galactosyl transferase GMA12/MNN10 family. This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of C. elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.
Probab=37.58  E-value=25  Score=14.55  Aligned_cols=58  Identities=10%  Similarity=0.077  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEE-EEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             8899999999999999973897399-864211256564354223557888886718998999
Q gi|254781051|r  446 DPEAVIRVVRMAVSFRMKFHKSVVI-DIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQL  506 (957)
Q Consensus       446 dpEav~~~~~lA~~yR~~F~kDVvI-Dlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~  506 (957)
                      |.+-..++.+=-.+|-++.+=++++ +.--|.+++.-+.   =.--|.|=+...+||...=+
T Consensus        22 ~~~~l~k~i~NR~dYA~~HGY~~~~~~~~~~~~~~~~~~---W~Kv~~iR~aM~~~P~aew~   80 (242)
T pfam05637        22 DHEYLLKSIKNRVDYAERHGYGFEYVDNSALLPHEMPGY---WAKLPAIRQTMKKYPDAEWI   80 (242)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCC---EEHHHHHHHHHHHCCCCEEE
T ss_conf             689999999869999998598599960132468557772---42689999999988993499


No 174
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=37.16  E-value=26  Score=14.47  Aligned_cols=35  Identities=20%  Similarity=0.097  Sum_probs=15.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf             7889999999999999997389739986421125656435422
Q gi|254781051|r  445 DDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS  487 (957)
Q Consensus       445 DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~  487 (957)
                      .+|++.-...++|-.+|+++...|+        .||+|..||+
T Consensus        11 R~~~~~e~~~~la~~v~e~~~~~v~--------~~fmElaePs   45 (125)
T cd03415          11 RRNTFNEDMEEWAAYLERKLGVPVY--------LTYNEYAEPN   45 (125)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEE--------EEEECCCCCC
T ss_conf             9577899999999999986199558--------7551106998


No 175
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=36.77  E-value=26  Score=14.43  Aligned_cols=109  Identities=24%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC-----CEEEEECCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf             9862056778889989987334356421147898889886358-----31578501002233323027999778884455
Q gi|254781051|r  579 KSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEG-----YKVRLSGQDCERGTFSHRHAILCDQETGKRYF  653 (957)
Q Consensus       579 e~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG-----~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~  653 (957)
                      .+|++.+-+.-|....---+...+.+-|+---+||-+  -..|     +.||++|-=+.--|=|.---|=.|-..+..  
T Consensus        43 sgfnPdkmva~IWa~kV~Pyl~~~AgpfaEV~ala~a--pk~gs~n~t~~vrftGkVvaaetksr~g~v~vd~dgdga--  118 (206)
T COG5618          43 SGFNPDKMVATIWAKKVMPYLNSNAGPFAEVKALASA--PKQGSNNWTFAVRFTGKVVAAETKSREGLVRVDIDGDGA--  118 (206)
T ss_pred             CCCCCHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHC--CCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEECCCCCC--
T ss_conf             5799314799998864023333158878999998738--122678974899986689975402555469984178752--


Q ss_pred             EHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             63442789845999824311110134320221138653111000024424541022565542
Q gi|254781051|r  654 PLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFIT  715 (957)
Q Consensus       654 pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfis  715 (957)
                              +++..+-      -||-|-+.--|+.        +-||+||-|  ||-.-||=.
T Consensus       119 --------~~RvQiG------PavrGtaiRDa~~--------fiqFndFkN--QIeyaq~gk  156 (206)
T COG5618         119 --------DARVQIG------PAVRGTAIRDALD--------FIQFNDFKN--QIEYAQFGK  156 (206)
T ss_pred             --------EEEEEEC------CCCCCCEECCCCC--------EEEHHHHHH--HHHHHHHHH
T ss_conf             --------5798755------6305632101125--------053444555--889999999


No 176
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=36.57  E-value=27  Score=14.41  Aligned_cols=86  Identities=16%  Similarity=0.337  Sum_probs=52.3

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEE-EECCCEECCC-----CCHHCCCCCCCCHHHHHHCCCEEEECC
Q ss_conf             7888625753334672588764510677443657999-8416020124-----701024677840011220340587426
Q gi|254781051|r  371 LPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHL-IINNQIGFTT-----NPSSARSCTYASDISKSIGIPIFHVNG  444 (957)
Q Consensus       371 lpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHi-VvNNQIGFTT-----~p~d~RSs~Y~TDiAK~i~aPI~HVN~  444 (957)
                      +-=-+|||- +.|+-++.+-  +..|..-..-|||=+ =+=|-.||-.     +|.|      -+|+-+++-       |
T Consensus        22 i~agvHGdE-~~G~~~~~~L--~~~l~~~~l~G~viivP~~N~~g~~~~~r~~~p~D------~~nlNR~FP-------G   85 (288)
T cd06254          22 ITAGVHGGE-YPGIQALQKL--AREIDPAKLSGTLIIVHVLNLSGFYARTPYIVPED------GKNLNRVFP-------G   85 (288)
T ss_pred             EECCCCCCH-HHHHHHHHHH--HHHCCHHHCCEEEEEEECCCHHHHHHCCCCCCCCC------CCCHHHCCC-------C
T ss_conf             976766554-8899999999--87488757817799993589999983486778888------775644389-------9


Q ss_pred             CCHHHHHHHHHHHHHHHHHH--CCCEEEEEEE
Q ss_conf             78899999999999999973--8973998642
Q gi|254781051|r  445 DDPEAVIRVVRMAVSFRMKF--HKSVVIDIVC  474 (957)
Q Consensus       445 DdpEav~~~~~lA~~yR~~F--~kDVvIDlv~  474 (957)
                      | ++. ...-++|...-.+.  +.|++|||=|
T Consensus        86 ~-~~G-s~teriA~~l~~~l~~~aD~~IDLHt  115 (288)
T cd06254          86 D-KDG-TLTERIAYFLTEEVIDKADFLIDLHS  115 (288)
T ss_pred             C-CCC-CHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf             9-999-98999999999988865989998236


No 177
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein  of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=36.42  E-value=27  Score=14.39  Aligned_cols=79  Identities=19%  Similarity=0.385  Sum_probs=61.6

Q ss_pred             HHCCCCCCCCCEEEEEECCCEECCCCCHH------CCCCCCCC------HHHHHHCCCEEEECCCCHHHHHHHHHHHHH-
Q ss_conf             51067744365799984160201247010------24677840------011220340587426788999999999999-
Q gi|254781051|r  393 LSGLSGYTVAGNIHLIINNQIGFTTNPSS------ARSCTYAS------DISKSIGIPIFHVNGDDPEAVIRVVRMAVS-  459 (957)
Q Consensus       393 ls~l~gY~tGGTiHiVvNNQIGFTT~p~d------~RSs~Y~T------DiAK~i~aPI~HVN~DdpEav~~~~~lA~~-  459 (957)
                      ---|.|.++++++|+-+.--+=..|-..-      +-|-+++|      -++|..+.|||-.-|++.|.=.++.+-+++ 
T Consensus        36 ~kPl~G~~i~~cLH~~~~Ta~L~~TL~~~GAEv~~~~cNplSTQDdvaAA~~~~~G~~vyA~rGe~~E~Y~~~~~~~l~~  115 (422)
T TIGR00936        36 EKPLKGVRIAACLHLTVKTAVLIETLKAGGAEVALTACNPLSTQDDVAAALAKAAGIPVYAWRGETNEEYYEALEQVLDA  115 (422)
T ss_pred             CCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             58977527642432148899999999851974887447887745689999986269528885179848999999999852


Q ss_pred             HHHHHCCCEEEE
Q ss_conf             999738973998
Q gi|254781051|r  460 FRMKFHKSVVID  471 (957)
Q Consensus       460 yR~~F~kDVvID  471 (957)
                      +...-.-|||||
T Consensus       116 ~~~~~~p~i~iD  127 (422)
T TIGR00936       116 FKDDKEPNIIID  127 (422)
T ss_pred             HCCCCCCCEEEE
T ss_conf             046899757882


No 178
>PRK04235 hypothetical protein; Provisional
Probab=36.36  E-value=27  Score=14.39  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=43.2

Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHH--HHHHH-----CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCH
Q ss_conf             11220340587426788999999999999--99973-----897399864211256564354223557888886718998
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVS--FRMKF-----HKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSV  503 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~--yR~~F-----~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v  503 (957)
                      |--.++.||+||-+-|.|+.-...++|.+  ||.--     .+-+++-+-|    ++. +|-|--     |   ..+--|
T Consensus        92 l~~k~ep~ILHV~cr~le~A~~Ll~~A~~~GFr~SGI~s~~~~r~iVaIrs----~~~-levPl~-----~---~g~~lV  158 (200)
T PRK04235         92 LWLKVQGPILHVAARDLETAKKLLELAREAGFKHSGIKSISDKRVIVEIRT----TER-MDVPLK-----E---DGKLLV  158 (200)
T ss_pred             EEEEECCCEEEEEECCHHHHHHHHHHHHHCCCCHHCCEECCCCCEEEEEEC----CCC-EEEEEC-----C---CCCCCC
T ss_conf             899931978776438889999999999973852006364279828999941----571-776423-----4---981675


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999986448
Q gi|254781051|r  504 LQLYADSLMKNQ  515 (957)
Q Consensus       504 ~~~Y~~~Li~~g  515 (957)
                      .+-|.+.|++..
T Consensus       159 ~~eyl~~Lv~~a  170 (200)
T PRK04235        159 DDEYLKILVEIA  170 (200)
T ss_pred             CHHHHHHHHHHH
T ss_conf             999999999999


No 179
>PRK13559 hypothetical protein; Provisional
Probab=36.21  E-value=27  Score=14.37  Aligned_cols=58  Identities=26%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf             701024677840011220340587426788999999999999999738973998642112565
Q gi|254781051|r  418 NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH  480 (957)
Q Consensus       418 ~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GH  480 (957)
                      |+...+-|-|..|=.-.-+|..++-...||++|-+. +-|+    +=++++-++++.|||-|.
T Consensus        74 N~aF~~lTGYs~~EviGrncrfLqGp~t~~~~v~~i-r~ai----~~~~~~~~el~nyrKDGs  131 (363)
T PRK13559         74 NQAFLDLTGYAAEEVVGRNCRFLQGAGTDPAAVAKI-RAAI----AAERVVVVELLNYRKDGS  131 (363)
T ss_pred             CHHHHHHHCCCHHHHCCCCCHHCCCCCCCHHHHHHH-HHHH----HCCCCEEEEEEEECCCCC
T ss_conf             879997639897998499924108999998999999-9999----839946999999826998


No 180
>pfam10109 FluMu_gp41 Mu-like prophage FluMu protein gp41. Members of this family of prokaryotic proteins include various gp41 proteins and related sequences.
Probab=35.97  E-value=27  Score=14.34  Aligned_cols=45  Identities=36%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             HHCCC-----CCEEEEECCCHHHH-HHHHHHHHCC--CCCCCEEEECCCHHHCCCC
Q ss_conf             52143-----78269724889999-9999997435--3488689856602210801
Q gi|254781051|r  752 QMCAE-----NNMYVANCTSPANY-FHILRRQIYD--RSSRPLIMMAPKSLLRHKR  799 (957)
Q Consensus       752 Ql~a~-----~N~~V~~~ttpAq~-FH~LRRQ~~r--~~rkPLiv~tPKsLLR~~~  799 (957)
                      ||+||     +|=..+--++|+.+ .++||||+..  +..-|   ++||-|.+...
T Consensus        36 q~AAErv~~~~nG~pv~~~S~~l~G~elLrRQI~~IG~i~GP---~s~k~l~~l~~   88 (105)
T pfam10109        36 QLAAERVVMSDNGKPVAYTSPVLMGLELLRRQIEFIGNINGP---LSPKQLRKLST   88 (105)
T ss_pred             HHHHHHEEECCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHCCCH
T ss_conf             765542476799957999683887799999999986287898---69999962499


No 181
>cd01854 YjeQ_engC YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=35.97  E-value=17  Score=15.86  Aligned_cols=70  Identities=14%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHH----HHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCC
Q ss_conf             887656440578875214378269724889999----99999974353488689856602210801268878937998
Q gi|254781051|r  738 QGPEHSSARLERFLQMCAENNMYVANCTSPANY----FHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGS  811 (957)
Q Consensus       738 qGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~----FH~LRRQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~  811 (957)
                      ..|..+..||||||-+|...|+.++.+=|-+-.    --.++.......--|.+..+.+.    +.....|.++..|.
T Consensus        89 ~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~gy~v~~~S~~~----~~g~~~L~~~l~~k  162 (287)
T cd01854          89 NEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKT----GEGLDELREYLKGK  162 (287)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCEEEEEECCC----CCCHHHHHHHHCCC
T ss_conf             899899899999999999779968999986221994899999999872998499996689----85889999874798


No 182
>PRK04081 hypothetical protein; Provisional
Probab=35.69  E-value=5  Score=19.92  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             HHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH--HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             997389739986421125656435422355788888671899899--99999864489898999999999999977566
Q gi|254781051|r  461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQ--LYADSLMKNQVISKQELQSLANNWHKYLEAEY  537 (957)
Q Consensus       461 R~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~--~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~  537 (957)
                      -|+=+.=|||+=                |.|--|++++++|+...  +-.+.=-.|-+++++|++++.++...+.|+.-
T Consensus        44 ~q~qgafviIEe----------------~~~g~YKi~eE~PS~~TRvilrd~dGtER~LS~eE~d~Li~eE~aKId~GT  106 (212)
T PRK04081         44 SQQQGAFVIIEE----------------QADGSYKILEEYPSSETRIVLRDLNGTERVLSKEEMDKLIKEEEAKIDNGT  106 (212)
T ss_pred             HHCCCCEEEEEE----------------CCCCCEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             750786899986----------------389944751006898624888648975001779999999999886640687


No 183
>PRK05439 pantothenate kinase; Provisional
Probab=35.53  E-value=14  Score=16.56  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHH-HCCCCCCCCCC-----HHH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf             77899999999887-43689986205-----677--888998998733435642114789888988635831
Q gi|254781051|r  560 NSVSKEILKKIGSS-IIRLPKSFNTH-----KIV--ERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYK  623 (957)
Q Consensus       560 T~v~~~~L~~i~~~-l~~~Pe~f~~h-----~~v--~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~  623 (957)
                      -+|.+.+..++.+. +..+|++.++.     -.+  .+.|++|-=|-++|-+=-+-+.-.+.|-+=+..|.+
T Consensus        95 VAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypNa~L~~rglm~RKGFPESYD~~~Ll~Fl~~vKsG~~  166 (312)
T PRK05439         95 VAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPNAELKERGLMKRKGFPESYDMRALLRFLSDVKSGKP  166 (312)
T ss_pred             EECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             102628899999999950789994589934665578689987677124789854479999999999976998


No 184
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit; InterPro: IPR010051   This entry represents the large subunit of a family of nitrate reductases found in proteobacteria which are localised to the periplasm. This subunit binds molybdopterin and contains a twin-arginine motif at the N terminus. The protein associates with NapB, a soluble haem-containing protein and NapC, a membrane-bound cytochrome c. The periplasmic nitrate reductases are not involved in the assimilation of nitrogen, and are not directly involved in the formation of electrochemical gradients (i.e. respiration) either. Rather, the purpose of this enzyme is either dissimilatory (i.e. to dispose of excess reductive equivalents) or indirectly respiratory by virtue of the consumption of electrons derived from NADH via the proton translocating NADH dehydrogenase. The enzymes from Alicagenes eutrophus  and Paracoccus pantotrophus  have been characterised. In Escherichia coli  (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).; GO: 0008940 nitrate reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding, 0042128 nitrate assimilation.
Probab=35.50  E-value=12  Score=17.03  Aligned_cols=32  Identities=41%  Similarity=0.575  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHCC-------CEEEEECCCC------CCCCCCCCE
Q ss_conf             7898889886358-------3157850100------223332302
Q gi|254781051|r  609 AESLAFGSLCYEG-------YKVRLSGQDC------ERGTFSHRH  640 (957)
Q Consensus       609 AE~LA~~SLl~eG-------~~VRlsGQD~------~RGTFshRH  640 (957)
                      +..|+|--=|.-|       -+--|+||-+      +=|||+||=
T Consensus       433 ~n~~vY~lHlL~GK~a~PG~~pFSLTGQpSACGTAReVGTF~HRL  477 (930)
T TIGR01706       433 ANNLVYNLHLLTGKIAKPGNSPFSLTGQPSACGTAREVGTFSHRL  477 (930)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             888899988751654688887534577766666523466323348


No 185
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=35.40  E-value=22  Score=15.03  Aligned_cols=51  Identities=31%  Similarity=0.595  Sum_probs=41.0

Q ss_pred             CCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCC-CH--HCCCCCC
Q ss_conf             575333467258876451067744365799984160201247-01--0246778
Q gi|254781051|r  377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN-PS--SARSCTY  427 (957)
Q Consensus       377 GDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~-p~--d~RSs~Y  427 (957)
                      -+.-|+|-||++.-.+-..-.|-.+-|-|-||..|-=||.+. |.  .++.-+|
T Consensus        24 a~~VfvGyGi~ape~~~dDy~g~Dv~gK~vv~l~~~P~f~~~~~~~f~g~~mTy   77 (157)
T cd04821          24 SPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTY   77 (157)
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCCCCC
T ss_conf             998997357058866864235877679889998379986777702206754420


No 186
>TIGR03494 salicyl_syn salicylate synthase. Members of this protein family are salicylate synthases, bifunctional enzymes that make salicylate, in two steps, from chorismate. Members are homologous to anthranilate synthase component I from Trp biosynthesis. Members typically are found in gene regions associated with siderophore or other secondary metabolite biosynthesis.
Probab=35.31  E-value=13  Score=16.75  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=26.1

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCH
Q ss_conf             899999855887432234555100150268898359618999717877310
Q gi|254781051|r  286 PRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLE  336 (957)
Q Consensus       286 ~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLE  336 (957)
                      ...+.++|++.++--++-.|+.-.-+|.-..+..+...++++..-...+-+
T Consensus         6 ~a~ll~~~~~~~y~~YEr~~ew~~g~G~~a~l~~d~~~~~~~~~g~~~~~~   56 (425)
T TIGR03494         6 LAAVLSEFAEEDYYVYERDGEWYLGIGVQAMLTIDSDGRRVTFTGVTDRQR   56 (425)
T ss_pred             HHHHHHHCCCCCEEEEEECCEEEEEECCEEEEEECCCCEEEEECCCCCEEC
T ss_conf             999986378887499997997999837649999868855998637500002


No 187
>pfam02030 Lipoprotein_8 Hypothetical lipoprotein (MG045 family). This family includes hypothetical lipoproteins, the amino terminal part of this protein is related to pfam01547, a family of solute binding proteins. This suggests this family also has a solute binding function.
Probab=35.20  E-value=21  Score=15.26  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=24.6

Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf             8886257533346725887645106774436579998
Q gi|254781051|r  372 PLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLI  408 (957)
Q Consensus       372 piliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiV  408 (957)
                      .|+--|||+||.||=-+-+--=+  +-.-+|-+.|||
T Consensus       267 ~I~YNGD~~fAA~GGd~~~e~~~--n~~p~~~nfHIV  301 (493)
T pfam02030       267 GIVYNGDAVYAALGGDLRDEADE--NMKPTGDNFHIV  301 (493)
T ss_pred             CEEECCCEEEHHCCCCCCCCCCC--CCCCCCCCEEEE
T ss_conf             26864410010148755455565--678777741374


No 188
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR; InterPro: IPR014178   Members of this entry are transcriptional regulators of fatty acid metabolism (FadR), including both biosynthesis and beta-oxidation reactions, which are found exclusively in a subset of Gammaproteobacteria with strictly one copy per genome. Proteins have an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR when expressed in Escherichia coli shows differences in regulatory response and fatty acid binding profiles. All members of this entry are expected to have the same function.; GO: 0000062 acyl-CoA binding, 0003677 DNA binding, 0003700 transcription factor activity, 0019217 regulation of fatty acid metabolic process.
Probab=35.12  E-value=22  Score=15.03  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=10.3

Q ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf             999999840643027772489989999
Q gi|254781051|r  165 IVDVLSHLYCSNIGVEFMHIVDSIERD  191 (957)
Q Consensus       165 Ii~~L~~tYCgsIGvEymHI~d~eer~  191 (957)
                      |+.-|+..|. .||-=|=  .+|+-|.
T Consensus       203 ILNglKglY~-RiG~yYF--~~peaRe  226 (275)
T TIGR02812       203 ILNGLKGLYT-RIGLYYF--ASPEARE  226 (275)
T ss_pred             HCCHHHHHHH-HHHHHCC--CCHHHHH
T ss_conf             2001014555-5511015--8878889


No 189
>COG1162 Predicted GTPases [General function prediction only]
Probab=34.91  E-value=19  Score=15.46  Aligned_cols=70  Identities=11%  Similarity=0.283  Sum_probs=41.6

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHH---HHHCCCCC---CCEEEECCCHHHCCCCCCCCHHHHCCCC
Q ss_conf             88765644057887521437826972488999999999---97435348---8689856602210801268878937998
Q gi|254781051|r  738 QGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILR---RQIYDRSS---RPLIMMAPKSLLRHKRVVSSLSDMTCGS  811 (957)
Q Consensus       738 qGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LR---RQ~~r~~r---kPLiv~tPKsLLR~~~a~S~l~d~~~g~  811 (957)
                      .-|+-|+.+|+|||=+|-..|++.+.|=|-+.+---.-   +++.+.++   =|++..+-|+=    .....|.+...|.
T Consensus        90 ~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~----~~~~~l~~~l~~~  165 (301)
T COG1162          90 VDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG----DGLEELAELLAGK  165 (301)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCC----CCHHHHHHHHCCC
T ss_conf             689989889999999997769957999975336761677899999999867935999537676----5589999975588


No 190
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=34.51  E-value=29  Score=14.18  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHH-HHHHHHHHHHHHCCCCEE
Q ss_conf             888798899999999999998999998640336222256465899-999999999873791079
Q gi|254781051|r  203 SSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVII-PAIEEIIRQGVQQGVDEM  265 (957)
Q Consensus       203 ~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG~EslI-P~L~~ii~~a~~~Gv~ei  265 (957)
                      ..++|.+|-+++++.|.+            .|.+++.+-|||-|+ |-+.+|++.+.+.|+.-.
T Consensus        44 ~~ELs~~e~~~~id~l~~------------~Gv~~v~~tGGEPllr~D~~ei~~~a~~~G~~~~   95 (375)
T PRK05301         44 GAELSTAEWIRVLREARA------------LGVLQLHFSGGEPLLRKDLEELVAHARRLGLYTN   95 (375)
T ss_pred             CCCCCHHHHHHHHHHHHH------------CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             578999999999999998------------6998899618652456689999999997697589


No 191
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase; InterPro: IPR011848    In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis. These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This entry describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of IPR005252 from INTERPRO, corresponding to phosphopantothenate--cysteine ligase activity ..
Probab=34.50  E-value=25  Score=14.61  Aligned_cols=13  Identities=31%  Similarity=0.468  Sum_probs=7.5

Q ss_pred             CCCHHHHHHHHHH
Q ss_conf             7899999999887
Q gi|254781051|r  561 SVSKEILKKIGSS  573 (957)
Q Consensus       561 ~v~~~~L~~i~~~  573 (957)
                      -|+.|.|-+++++
T Consensus       186 nV~~e~Lv~vAr~  198 (253)
T TIGR02114       186 NVTQEELVKVARA  198 (253)
T ss_pred             CCCHHHHHHHHHH
T ss_conf             3786568999998


No 192
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=34.47  E-value=20  Score=15.35  Aligned_cols=41  Identities=20%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCC
Q ss_conf             75333467258876451067744365799984160201247
Q gi|254781051|r  378 DAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN  418 (957)
Q Consensus       378 DAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~  418 (957)
                      +--|+|-||++.-.+-.+-.|-.+-|-|-||..|-=+|.+.
T Consensus        23 ~lVFvGYGi~ape~~~dDy~g~Dv~GKivvvl~ndP~~~~~   63 (142)
T cd04814          23 PLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPG   63 (142)
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf             87997146157766855345877679789998079999887


No 193
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor  for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=34.38  E-value=29  Score=14.16  Aligned_cols=28  Identities=21%  Similarity=0.446  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             9999999998737910799806765526
Q gi|254781051|r  248 PAIEEIIRQGVQQGVDEMILGMAHRGRL  275 (957)
Q Consensus       248 P~L~~ii~~a~~~Gv~eiviGMaHRGRL  275 (957)
                      |+|+.+++..+..|+++|+|...|.|..
T Consensus        30 Pii~~ii~~l~~~gi~~iil~~gy~~~~   57 (253)
T cd02524          30 PILWHIMKIYSHYGHNDFILCLGYKGHV   57 (253)
T ss_pred             EHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf             8999999999986998799953225113


No 194
>TIGR00564 trpE_most anthranilate synthase component I; InterPro: IPR005256   This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes eukaryotes, archaea, and many bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from the other group. The other group includes Gram-negative proteobacteria such as Escherichia coli and Helicobacter pylori but also the Gram-positive organism Corynebacterium glutamicum, and is described by IPR005257 from INTERPRO.    A sequence from Bacillus subtilis that scores above the trusted cut-off is annotated as PabB rather than TrpE. However, it is part of an operon that is required for Trp as well as folate biosynthesis, is Trp-repressible, and contains TrpG. It is likely that this sequence annotated as PabB functions both as PabB and as TrpE. ; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=34.10  E-value=22  Score=14.99  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             CCHHH-CCCEEECCCCCCCCCCCHHHHHHHHHHH----HCCCEEE
Q ss_conf             99788-1715725665787777899999999984----0643027
Q gi|254781051|r  140 FVKAD-YDRKICMKGVLGLESATIPEIVDVLSHL----YCSNIGV  179 (957)
Q Consensus       140 Lse~D-Ld~~f~~~~~~g~~~~tL~eIi~~L~~t----YCgsIGv  179 (957)
                      ++-.| |-..|+.|++-|-++.--=|||+.||.+    |-|-||+
T Consensus       426 ~t~~DALra~lPAGTlSGAPK~RAme~I~ELE~~~RG~YgGavGy  470 (543)
T TIGR00564       426 LTAIDALRATLPAGTLSGAPKVRAMELIDELEPEKRGIYGGAVGY  470 (543)
T ss_pred             CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf             773026643367764578844899999998717884235306871


No 195
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=33.95  E-value=13  Score=16.79  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=14.9

Q ss_pred             EEECCCCHHHHHHHH-HHHHH----HHHHH
Q ss_conf             874267889999999-99999----99973
Q gi|254781051|r  440 FHVNGDDPEAVIRVV-RMAVS----FRMKF  464 (957)
Q Consensus       440 ~HVN~DdpEav~~~~-~lA~~----yR~~F  464 (957)
                      +-+|==.||..-+.+ .|-.|    .|.+|
T Consensus       543 i~mNvg~Pe~Af~~ar~lP~dGVGLaR~Ef  572 (877)
T TIGR01418       543 IYMNVGNPERAFRFARALPNDGVGLARIEF  572 (877)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             898538854578997525788622788999


No 196
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=33.91  E-value=29  Score=14.11  Aligned_cols=36  Identities=22%  Similarity=0.487  Sum_probs=14.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             340587426788999999999999999738973998
Q gi|254781051|r  436 GIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVID  471 (957)
Q Consensus       436 ~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvID  471 (957)
                      ++|||-..|+++|.--....-+++|...-+-|++||
T Consensus        92 Gi~VfA~~g~t~eey~~~~~~~L~~~~~~~P~iiiD  127 (430)
T pfam05221        92 GVPVFAWKGETLEEYWWCIERALTFKDGQGPNMILD  127 (430)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf             976999379998999999999846588989656542


No 197
>PRK06772 salicylate synthase Irp9; Reviewed
Probab=33.76  E-value=19  Score=15.55  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=15.3

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78999999998874368998620567788899899
Q gi|254781051|r  561 SVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQ  595 (957)
Q Consensus       561 ~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~  595 (957)
                      |-+.+.-+.+...|..-|++..=|--+.+...+.+
T Consensus       262 g~d~~eD~~l~~eLl~d~KE~aEH~mvVdl~rndL  296 (434)
T PRK06772        262 MGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAEL  296 (434)
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             96989999999988549688999999999999887


No 198
>KOG2414 consensus
Probab=33.37  E-value=26  Score=14.53  Aligned_cols=59  Identities=27%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             CCEEEEEECCCEECCCCC--HH--CCCCCCCCHHHHHHCCCEE--EECCCCHHHHHHHHHHHHHH
Q ss_conf             657999841602012470--10--2467784001122034058--74267889999999999999
Q gi|254781051|r  402 AGNIHLIINNQIGFTTNP--SS--ARSCTYASDISKSIGIPIF--HVNGDDPEAVIRVVRMAVSF  460 (957)
Q Consensus       402 GGTiHiVvNNQIGFTT~p--~d--~RSs~Y~TDiAK~i~aPI~--HVN~DdpEav~~~~~lA~~y  460 (957)
                      +-|||-+.|||+=+--+-  -|  .-.+-|||||.+..-+-=+  -+..|==|||..+-+=-+.|
T Consensus       292 a~tIHY~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~  356 (488)
T KOG2414         292 ANTIHYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKY  356 (488)
T ss_pred             CCEEEEEECCCCCCCCCEEEEECCCCCCCEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             52688862455467884799945744586671440016787832707899999999999999986


No 199
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=33.29  E-value=30  Score=14.04  Aligned_cols=13  Identities=31%  Similarity=0.493  Sum_probs=4.9

Q ss_pred             ECCCCHHHHHHHH
Q ss_conf             2256465899999
Q gi|254781051|r  238 FGADGSEVIIPAI  250 (957)
Q Consensus       238 FsLEG~EslIP~L  250 (957)
                      +|+-|.|+++|+|
T Consensus       240 ~G~~GlEt~lp~~  252 (344)
T cd01316         240 PGFPGVETSLPLL  252 (344)
T ss_pred             CCCCHHHHHHHHH
T ss_conf             9856277689999


No 200
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=33.28  E-value=28  Score=14.23  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=15.9

Q ss_pred             HHHHHHHH--HCCCCEEEE-ECCCCCHH--HHHHHHHCCCH
Q ss_conf             99999987--379107998-06765526--89998853798
Q gi|254781051|r  251 EEIIRQGV--QQGVDEMIL-GMAHRGRL--NVLSQIMNKLP  286 (957)
Q Consensus       251 ~~ii~~a~--~~Gv~eivi-GMaHRGRL--NVL~Nvl~Kp~  286 (957)
                      +..++.|.  ...+.+|++ |=+-|=-+  ..|.+++||++
T Consensus       341 ~~aL~dAgl~~~dId~VILVGGSTRIP~Vq~~l~~~Fgkep  381 (657)
T PTZ00186        341 KQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDP  381 (657)
T ss_pred             HHHHHHHCCCHHHEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             99999818998780089995784154799999999858997


No 201
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=33.13  E-value=30  Score=14.02  Aligned_cols=16  Identities=19%  Similarity=0.183  Sum_probs=7.3

Q ss_pred             EEECCCCCCCCCHHHH
Q ss_conf             8625753334672588
Q gi|254781051|r  374 IIHGDAAFAGQGIVSE  389 (957)
Q Consensus       374 liHGDAAfaGQGVV~E  389 (957)
                      --|-|...-|+++-.+
T Consensus       306 nrHe~~~~~G~~~~~~  321 (808)
T COG3250         306 NRHEDDPILGRVTDED  321 (808)
T ss_pred             ECCCCCCCCCCCCCHH
T ss_conf             0466877655454777


No 202
>PRK13410 molecular chaperone DnaK; Provisional
Probab=32.61  E-value=29  Score=14.13  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             CCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             540478886257533346725887645106774436
Q gi|254781051|r  367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVA  402 (957)
Q Consensus       367 ~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tG  402 (957)
                      ...|.--..-|.-.++..-.---.|.|+++|.=--|
T Consensus       428 Qt~v~I~V~qGEr~~~~dn~~Lg~F~L~gippap~G  463 (719)
T PRK13410        428 QTLVEIHVLQGEREMASDNKSLGRFKLTGIPPAPRG  463 (719)
T ss_pred             CCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf             715899998337853102846758886187989999


No 203
>pfam04952 AstE_AspA Succinylglutamate desuccinylase / Aspartoacylase family. This family includes Succinylglutamate desuccinylase EC:3.1.-.- that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. The family also include aspartoacylase EC:3.5.1.15 which cleaves acylaspartate into a fatty acid and aspartate. Mutations in human aspartoacylase (ACY-2) lead to Canavan disease. This family is probably structurally related to pfam00246 (Bateman A pers. obs.).
Probab=32.24  E-value=31  Score=13.92  Aligned_cols=95  Identities=23%  Similarity=0.350  Sum_probs=56.6

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCE-EEEEECCCEECCCCCHHCCCCC-CCCHHHHHHCCCEEEECC--CC
Q ss_conf             7888625753334672588764510677443657-9998416020124701024677-840011220340587426--78
Q gi|254781051|r  371 LPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGN-IHLIINNQIGFTTNPSSARSCT-YASDISKSIGIPIFHVNG--DD  446 (957)
Q Consensus       371 lpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGT-iHiVvNNQIGFTT~p~d~RSs~-Y~TDiAK~i~aPI~HVN~--Dd  446 (957)
                      +-=-+|||- +.|+-++.+-+..  |..-..-|+ |.+.+=|-+||...-   |-+. --+|+-+++--   --+|  ..
T Consensus         7 i~aG~HGdE-~~G~~~~~~L~~~--l~~~~l~G~ii~vP~~Np~a~~~~~---R~~p~d~~nlNR~FPG---~~~g~~~~   77 (289)
T pfam04952         7 LSAGIHGNE-LAGVELLRRLLRQ--LDPAQRAGTRILVPLANPPAFRAGS---RYIPIDRRDLNRAFPG---RADGSSGS   77 (289)
T ss_pred             EECCCCCCH-HHHHHHHHHHHHC--CCHHHCCCEEEEEECCCHHHHHHCE---ECCCCCCCCHHCCCCC---CCCCCCCC
T ss_conf             986877652-8799999999865--7354459319999634999997277---4578898830114898---63578530


Q ss_pred             HHHHHHHHHHHHHHHHHH--CCCEEEEEEE
Q ss_conf             899999999999999973--8973998642
Q gi|254781051|r  447 PEAVIRVVRMAVSFRMKF--HKSVVIDIVC  474 (957)
Q Consensus       447 pEav~~~~~lA~~yR~~F--~kDVvIDlv~  474 (957)
                      +......-++|-.+..+.  ..|++|||=|
T Consensus        78 ~~~~t~teria~~~~~~~~~~aD~~iDLHt  107 (289)
T pfam04952        78 PYRATRAERIADAFFRALLPRADIVLDLHT  107 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             135379999999999754405778999046


No 204
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=31.97  E-value=26  Score=14.50  Aligned_cols=30  Identities=20%  Similarity=0.065  Sum_probs=13.0

Q ss_pred             EEECCCCHHHHHHHHHHHHHH-HHHHCCCEE
Q ss_conf             874267889999999999999-997389739
Q gi|254781051|r  440 FHVNGDDPEAVIRVVRMAVSF-RMKFHKSVV  469 (957)
Q Consensus       440 ~HVN~DdpEav~~~~~lA~~y-R~~F~kDVv  469 (957)
                      ..+.-+.-||+-.|.+.|.+. ..++.+|+-
T Consensus       324 ~~~~~t~eeA~~~a~e~a~~~l~~~l~~~a~  354 (383)
T pfam06898       324 KVVKLTKEEAVEKGKKLAKKKLEKEIDKDAK  354 (383)
T ss_pred             EEEEECHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             9999299999999999999999963799999


No 205
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=31.97  E-value=31  Score=13.89  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCC----CHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHH
Q ss_conf             333467258876451067744365799984160201247----0102467784001122034058742678899999999
Q gi|254781051|r  380 AFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN----PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVR  455 (957)
Q Consensus       380 AfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~----p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~  455 (957)
                      +-+|||+..=.=.|+...+-. .+.|-++++--..-|..    ..|..+.+|+.       -|++.....|++.|...+.
T Consensus        70 ~ts~~Gl~l~~e~l~~a~~~~-~p~Vi~~~~r~g~~~~~~~~~q~D~~~~~~~g-------~~~~vl~p~~~qE~~d~~~  141 (160)
T cd07034          70 ATSGPGLNLMAEALYLAAGAE-LPLVIVVAQRPGPSTGLPKPDQSDLMAARYGG-------HPWPVLAPSSVQEAFDLAL  141 (160)
T ss_pred             EECCCCHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHCC-------CCEEEEECCCHHHHHHHHH
T ss_conf             306533988887999998478-88899997458886545554417899999679-------9879993799999999999


Q ss_pred             HHHHHHHHHCCCEEEE
Q ss_conf             9999999738973998
Q gi|254781051|r  456 MAVSFRMKFHKSVVID  471 (957)
Q Consensus       456 lA~~yR~~F~kDVvID  471 (957)
                      .|++.-.+++.-|++=
T Consensus       142 ~A~~lae~~~~Pvi~~  157 (160)
T cd07034         142 EAFELAEKYRLPVIVL  157 (160)
T ss_pred             HHHHHHHHHCCCEEEE
T ss_conf             9999999868998995


No 206
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=31.80  E-value=26  Score=14.51  Aligned_cols=15  Identities=20%  Similarity=0.496  Sum_probs=8.0

Q ss_pred             HHHCCCCCEEECCCC
Q ss_conf             893799860351577
Q gi|254781051|r  805 SDMTCGSVFQAVLSD  819 (957)
Q Consensus       805 ~d~~~g~~F~~vi~d  819 (957)
                      +-+..|+.|++||++
T Consensus        33 ~g~Ydg~~FHRVi~~   47 (158)
T COG0652          33 EGFYDGTIFHRVIPG   47 (158)
T ss_pred             CCCCCCCEEEEEECC
T ss_conf             277799567885158


No 207
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=31.02  E-value=18  Score=15.70  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=46.0

Q ss_pred             HHHHHHCCCHHH----------CCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             999988170454----------0167777776678776787666999788171572566578777789999999998406
Q gi|254781051|r  105 IDAYRSYGHFKA----------NIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYC  174 (957)
Q Consensus       105 I~AYR~~GHl~A----------~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~g~~~~tL~eIi~~L~~tYC  174 (957)
                      ||+|.+||=..+          .+.=|||+  ++-..++--...||       ..-+|.-..+++.||--+||++++.--
T Consensus        86 vN~f~QRg~~a~vlR~ip~~Ip~fe~LGLP--~~v~~~~a~~~~GL-------iLVTGPTGSGKSTTlAsmIDyIN~~~~  156 (350)
T TIGR01420        86 VNAFKQRGGVALVLRLIPSKIPTFEELGLP--RPVLRELAERPRGL-------ILVTGPTGSGKSTTLASMIDYINKNKA  156 (350)
T ss_pred             EHHHHHCCHHHHHHHHCCCCCCCHHHCCCC--HHHHHHHHHCCCCC-------EEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             203235000642323115346216663798--78999998366993-------898768898678999999978740388


Q ss_pred             CCE-----EEEEECCC
Q ss_conf             430-----27772489
Q gi|254781051|r  175 SNI-----GVEFMHIV  185 (957)
Q Consensus       175 gsI-----GvEymHI~  185 (957)
                      ++|     =+||+|=+
T Consensus       157 ~HIiTIEDPIEyvh~~  172 (350)
T TIGR01420       157 GHIITIEDPIEYVHKN  172 (350)
T ss_pred             CCCEEEECCEEEEECC
T ss_conf             8825631773141047


No 208
>KOG0628 consensus
Probab=30.93  E-value=32  Score=13.77  Aligned_cols=116  Identities=24%  Similarity=0.356  Sum_probs=62.6

Q ss_pred             EEEEECCCCCCCCC-HHHHHHHHHC----CCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHH--------------
Q ss_conf             88862575333467-2588764510----6774436579998416020124701024677840011--------------
Q gi|254781051|r  372 PLIIHGDAAFAGQG-IVSETFGLSG----LSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDIS--------------  432 (957)
Q Consensus       372 piliHGDAAfaGQG-VV~Etl~ls~----l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiA--------------  432 (957)
                      .|-+|=|||+||-- ++.|-=.+.+    ...|.+.=.=-..||    |+-+|.--|+..+-|+.-              
T Consensus       265 glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vn----fDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~  340 (511)
T KOG0628         265 GLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVN----FDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGS  340 (511)
T ss_pred             CEEEEEEHHHCCCCCCCHHHHHHHHCCHHHCCCCCCHHHEEEEE----EEEECCEEECCCEEEEEEECCHHHHCCHHHCC
T ss_conf             87899634531543158878877502233303357852603776----53000345047604666503827644433236


Q ss_pred             ----HHHCCCEEEECC-------------CC-HHHHHHHHHHHHHHHHHHCCC--------EEEEEEECCCCCCCCCCCC
Q ss_conf             ----220340587426-------------78-899999999999999973897--------3998642112565643542
Q gi|254781051|r  433 ----KSIGIPIFHVNG-------------DD-PEAVIRVVRMAVSFRMKFHKS--------VVIDIVCYRRFGHNEGDEP  486 (957)
Q Consensus       433 ----K~i~aPI~HVN~-------------Dd-pEav~~~~~lA~~yR~~F~kD--------VvIDlv~YRr~GHNE~DeP  486 (957)
                          +--+.|.-|==.             +. -+-+-+-.+||-+|-+--.+|        ++.+|||||.-|+||.-  
T Consensus       341 ~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~n--  418 (511)
T KOG0628         341 APDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEIN--  418 (511)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCHHH--
T ss_conf             888210115200113267899999988688999999999999999999860487415502210021577525874789--


Q ss_pred             CCCCHHHHHH
Q ss_conf             2355788888
Q gi|254781051|r  487 SFTQPMMYKT  496 (957)
Q Consensus       487 ~fTQP~mY~~  496 (957)
                         .-+++..
T Consensus       419 ---e~Ll~~i  425 (511)
T KOG0628         419 ---EALLNRL  425 (511)
T ss_pred             ---HHHHHHH
T ss_conf             ---9999999


No 209
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=30.77  E-value=26  Score=14.44  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999999999987379107998
Q gi|254781051|r  246 IIPAIEEIIRQGVQQGVDEMIL  267 (957)
Q Consensus       246 lIP~L~~ii~~a~~~Gv~eivi  267 (957)
                      .+..++..++.|....+++|++
T Consensus       293 ~~~~v~~~L~~a~~~dId~ViL  314 (595)
T PRK01433        293 TINIAQECLEQAGNPNIDGVIL  314 (595)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEE
T ss_conf             9999999999769353554899


No 210
>pfam04194 PDCD2_C Programmed cell death protein 2, C-terminal putative domain.
Probab=30.68  E-value=24  Score=14.76  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=11.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             6205677888998998733435642114
Q gi|254781051|r  581 FNTHKIVERLMANRQKMIETGKGIDWSM  608 (957)
Q Consensus       581 f~~h~~v~k~~~~R~~~~~~~~~iDW~~  608 (957)
                      |++-|++...|+..    ..+.++|||+
T Consensus       117 fQlmP~li~~L~~~----~~~~~~dwGt  140 (169)
T pfam04194       117 FQIMPQLISYLEVE----SEGVGMDWGT  140 (169)
T ss_pred             EEECHHHHHHHHCC----CCCCCCCEEE
T ss_conf             77536788774035----6667842058


No 211
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=30.65  E-value=27  Score=14.40  Aligned_cols=15  Identities=47%  Similarity=0.694  Sum_probs=6.9

Q ss_pred             CCHHHHHHHHHCCCC
Q ss_conf             672588764510677
Q gi|254781051|r  384 QGIVSETFGLSGLSG  398 (957)
Q Consensus       384 QGVV~Etl~ls~l~g  398 (957)
                      -|.|.|-+.|+++..
T Consensus       275 tG~V~Ey~~~tq~~~  289 (798)
T COG2374         275 TGTVSEYYGLTQLFA  289 (798)
T ss_pred             EEEEEEECCCCCCCC
T ss_conf             888876316654112


No 212
>smart00087 PTH Parathyroid hormone.
Probab=30.52  E-value=17  Score=15.85  Aligned_cols=19  Identities=26%  Similarity=0.718  Sum_probs=16.0

Q ss_pred             CCCCHHHHHHHHHHHCCCC
Q ss_conf             4899899999999841457
Q gi|254781051|r  183 HIVDSIERDWVRNTIEDYD  201 (957)
Q Consensus       183 HI~d~eer~Wlq~riE~~~  201 (957)
                      ||++.+.+.||++.||..-
T Consensus        16 ~lq~~~R~~wL~~~le~vh   34 (36)
T smart00087       16 HLQSLERREWLRKKLQDVH   34 (36)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             7999999999999998723


No 213
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=30.49  E-value=33  Score=13.71  Aligned_cols=53  Identities=25%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             CCEECCCCCHH-----CC------------CCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             60201247010-----24------------6778400112203405874267889999999999999997389739
Q gi|254781051|r  411 NQIGFTTNPSS-----AR------------SCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVV  469 (957)
Q Consensus       411 NQIGFTT~p~d-----~R------------Ss~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVv  469 (957)
                      |..||||+=.+     +|            -.+|-=-..=++..=|.=+-|||.|||++++      .+||+.-||
T Consensus        92 yR~gFsTDL~E~DVifGrGEKKL~~aI~e~v~~Y~P~AvFVYsTCv~alIGDD~~AVCk~A------~~k~G~~Vi  161 (470)
T TIGR01283        92 YRLGFSTDLTEKDVIFGRGEKKLFHAIREIVERYHPAAVFVYSTCVVALIGDDLEAVCKAA------AEKYGIPVI  161 (470)
T ss_pred             CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEECCEECCEECCCHHHHHHHH------HHCCCCCEE
T ss_conf             1366632660246673314478999999998632997489945713102448889999999------723586067


No 214
>pfam12076 Wax2_C WAX2 C-terminal domain. This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with pfam04116. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases.
Probab=30.46  E-value=33  Score=13.71  Aligned_cols=37  Identities=16%  Similarity=0.364  Sum_probs=29.3

Q ss_pred             HHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             7521437826972488999999999974353488689856
Q gi|254781051|r  751 LQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMA  790 (957)
Q Consensus       751 LQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~t  790 (957)
                      |-|| +.|+||+..  .-..|+.|++++-...+.-|+.-|
T Consensus        16 ~aLC-~rgi~V~m~--~ke~~~~lk~e~~~~~~~~Lv~s~   52 (164)
T pfam12076        16 LALC-KKGIKVVML--SKEEFEKLKPEAPEKVQDNLVLST   52 (164)
T ss_pred             HHHH-HCCCEEEEE--CHHHHHHHHHHCCHHHHHHEEEEC
T ss_conf             9998-669989995--689999999873887663378725


No 215
>pfam05320 Pox_RNA_Pol_19 Poxvirus DNA-directed RNA polymerase 19 kDa subunit. This family contains several DNA-directed RNA polymerase 19 kDa polypeptides. The Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
Probab=30.39  E-value=12  Score=16.95  Aligned_cols=17  Identities=18%  Similarity=0.280  Sum_probs=8.8

Q ss_pred             HHHHHHCCCHHHCCCCC
Q ss_conf             99998817045401677
Q gi|254781051|r  105 IDAYRSYGHFKANIDPL  121 (957)
Q Consensus       105 I~AYR~~GHl~A~lDPL  121 (957)
                      |.-|..-|-++-..|-|
T Consensus        80 iSLfEiTGIiaESyNLL   96 (167)
T pfam05320        80 ISLFEITGIIAESYNLL   96 (167)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             33788778999888898


No 216
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=30.27  E-value=28  Score=14.30  Aligned_cols=70  Identities=24%  Similarity=0.290  Sum_probs=45.4

Q ss_pred             HHHHHHH-HHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEEC----CCCCCCCCC-CHHHHHHHH
Q ss_conf             9999999-9999998817045401677777766787767876669997881715725----665787777-899999999
Q gi|254781051|r   96 KDFFQVM-KMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICM----KGVLGLESA-TIPEIVDVL  169 (957)
Q Consensus        96 ~kq~rV~-~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~----~~~~g~~~~-tL~eIi~~L  169 (957)
                      .+.++|. .||.||...-|..|-=||...  -     .--++-|||+.+||..+|-+    ++++.+..+ || |+|.+|
T Consensus        36 ~dr~~Ilatl~eAyE~kh~~i~aP~pve~--I-----~t~Md~~glt~~dLa~~iGSks~vS~iL~~rraLTl-e~ikkL  107 (120)
T COG5499          36 LDRADILATLIEAYEFKHYPIAAPDPVEV--I-----RTLMDQYGLTLADLANEIGSKSRVSNILSGRRALTL-EHIKKL  107 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHCCCHHHH--H-----HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf             89999999998606655140316888899--9-----999999387188889986761889999732067669-999999


Q ss_pred             HHHH
Q ss_conf             9840
Q gi|254781051|r  170 SHLY  173 (957)
Q Consensus       170 ~~tY  173 (957)
                      .+-+
T Consensus       108 ~q~~  111 (120)
T COG5499         108 HQRF  111 (120)
T ss_pred             HHHH
T ss_conf             9986


No 217
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=30.17  E-value=33  Score=13.68  Aligned_cols=62  Identities=11%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEE--CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7778999999999840643027772--48998999999998414577888798899999999999998999998
Q gi|254781051|r  158 ESATIPEIVDVLSHLYCSNIGVEFM--HIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFID  229 (957)
Q Consensus       158 ~~~tL~eIi~~L~~tYCgsIGvEym--HI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~  229 (957)
                      .....++..+.|++.|  .|-++|.  +.++.+-+.-+++   .     ..++.+++...+.+.++--+|.||.
T Consensus        70 ~~~~v~~f~~~L~~~~--~i~v~~~DEr~TS~~A~~~l~~---~-----~~~~~k~k~~iD~~AA~iILq~~L~  133 (134)
T pfam03652        70 QTKRVRKFARRLKKRF--GLPVELVDERLTTVEAERILRE---A-----GLSRKKRKEVVDSIAAVIILQSYLD  133 (134)
T ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHH---C-----CCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9999999999999861--9986886343279999999997---3-----7442102521679999999999866


No 218
>COG3608 Predicted deacylase [General function prediction only]
Probab=30.12  E-value=33  Score=13.67  Aligned_cols=94  Identities=17%  Similarity=0.299  Sum_probs=48.2

Q ss_pred             EEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE-CCCEECCCCCHHCCCCCCCC-HHHHHHC-CCEEEECCC
Q ss_conf             04788862575333467258876451067744365799984-16020124701024677840-0112203-405874267
Q gi|254781051|r  369 RVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLII-NNQIGFTTNPSSARSCTYAS-DISKSIG-IPIFHVNGD  445 (957)
Q Consensus       369 ~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVv-NNQIGFTT~p~d~RSs~Y~T-DiAK~i~-aPI~HVN~D  445 (957)
                      -.|-=-+|||- ..|+....+-  |.+|+.=.+-|||+||= =|      .|.-..-++|+. |--.+.. .| =--+|.
T Consensus        51 ~~l~ag~HGdE-l~G~~al~~L--i~~L~~a~i~GtV~iVP~aN------~~a~~~~~R~~p~d~~N~NR~fP-g~~dgs  120 (331)
T COG3608          51 VLLQAGVHGDE-LPGVIALRRL--IPALDPADISGTVIIVPIAN------PPAFEAQGRFSPGDDTNLNRAFP-GRPDGS  120 (331)
T ss_pred             EEEEECCCCCC-CCHHHHHHHH--HHHCCHHHCCCEEEEEECCC------HHHHHHHCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf             89971245554-6438999999--97567754474399972258------88898614437787876334588-998988


Q ss_pred             CHHHHHHHH-HHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             889999999-99999999738973998642112
Q gi|254781051|r  446 DPEAVIRVV-RMAVSFRMKFHKSVVIDIVCYRR  477 (957)
Q Consensus       446 dpEav~~~~-~lA~~yR~~F~kDVvIDlv~YRr  477 (957)
                      ..+...... ++.++     ..|+|+||=|-..
T Consensus       121 ~t~ria~~l~r~L~~-----~aD~VlDlHsg~~  148 (331)
T COG3608         121 ATERIADRLKRLLLP-----LADIVLDLHSGGE  148 (331)
T ss_pred             HHHHHHHHHHHHHHC-----CCCEEEECCCCCC
T ss_conf             799999999986420-----3678998157997


No 219
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=30.04  E-value=33  Score=13.66  Aligned_cols=21  Identities=14%  Similarity=0.263  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999989999986
Q gi|254781051|r  210 EQRDILDKLVRAEGFEKFIDI  230 (957)
Q Consensus       210 eK~~iL~~L~~Ae~FE~FL~~  230 (957)
                      --+.+|+++.-.|-=|+|++.
T Consensus       205 Par~ll~~~FG~eWae~yi~~  225 (236)
T PRK13246        205 PADKLFKSFFGEKWTKKFINK  225 (236)
T ss_pred             CHHHHHHHHHCHHHHHHHHHH
T ss_conf             788899997094999999986


No 220
>cd01815 BMSC_UbP_N BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins.  This CD represents the N-terminal ubiquitin-like domain.
Probab=29.89  E-value=14  Score=16.54  Aligned_cols=46  Identities=35%  Similarity=0.481  Sum_probs=28.6

Q ss_pred             CCCHHHCCCCC-----------CCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHH
Q ss_conf             66022108012-----------688789379986035157764334445444579545768998688578999
Q gi|254781051|r  790 APKSLLRHKRV-----------VSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDL  851 (957)
Q Consensus       790 tPKsLLR~~~a-----------~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL  851 (957)
                      .|||++|.|.+           +|+++.+..+. .+.-+|||.              -+ -+|.|--|.--|+
T Consensus         1 ~pks~~~~pe~e~gd~~~ggy~vs~lKQLia~~-L~dS~PDPe--------------LI-~li~CG~~LkDd~   57 (75)
T cd01815           1 APKSLFPFPEVELGDVSPGGYQVSTLKQLIAAQ-LPDSLPDPE--------------LI-DLIHCGRKLKDDQ   57 (75)
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH-CCCCCCCHH--------------HH-HHHCCCCEECCCC
T ss_conf             973323388887776599834378999999755-654699845--------------72-2211141314654


No 221
>KOG1520 consensus
Probab=29.88  E-value=10  Score=17.57  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             CCCCHHHHHHHHHHHH---HCCCEEEEECC-CCCCCCCCCCEEEEEECCCCCEEEEHH----HCCC-CCCEEEEEECCCC
Q ss_conf             6421147898889886---35831578501-002233323027999778884455634----4278-9845999824311
Q gi|254781051|r  603 GIDWSMAESLAFGSLC---YEGYKVRLSGQ-DCERGTFSHRHAILCDQETGKRYFPLG----NISK-DQGHCEVVNSFLS  673 (957)
Q Consensus       603 ~iDW~~AE~LA~~SLl---~eG~~VRlsGQ-D~~RGTFshRHavl~dq~t~~~y~pL~----~l~~-~q~~f~v~nS~LS  673 (957)
                      .|+|....    |.++   .||-++|+..+ |+-+      --+++=..+-.+|.+=+    -+.. .-|++--||-.=-
T Consensus       140 ~V~p~g~~----a~~l~~~~~G~~~kf~N~ldI~~------~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK  209 (376)
T KOG1520         140 KVGPEGGL----AELLADEAEGKPFKFLNDLDIDP------EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK  209 (376)
T ss_pred             EECCCCCC----CEECCCCCCCEEEEECCCEEECC------CCEEEEECCCCCCCHHHEEEEEECCCCCCCEEEECCCCC
T ss_conf             97788870----03246612590566327536767------871999326245562265776622797664687468664


Q ss_pred             CCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHH-HHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             110134320221138653111000024424541022565-5420257623336813543688888887656440578875
Q gi|254781051|r  674 EQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQ-FITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQ  752 (957)
Q Consensus       674 E~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDq-fiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQ  752 (957)
                      +.-||-=+.                  -|+||-|.-.|| |+--+|+-=.|..-.-+        .||--.++  |=|-|
T Consensus       210 ~~~VLld~L------------------~F~NGlaLS~d~sfvl~~Et~~~ri~rywi--------~g~k~gt~--EvFa~  261 (376)
T KOG1520         210 VTKVLLDGL------------------YFPNGLALSPDGSFVLVAETTTARIKRYWI--------KGPKAGTS--EVFAE  261 (376)
T ss_pred             CHHHHHHCC------------------CCCCCCCCCCCCCEEEEEEECCCEEEEEEE--------CCCCCCCH--HHHHH
T ss_conf             044145216------------------455661088899889999502202466684--------47866726--56751


Q ss_pred             -HC---------CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCHH------HCC--CCCCCCHHHH-CCCCCE
Q ss_conf             -21---------4378269724889999999999743534886898566022------108--0126887893-799860
Q gi|254781051|r  753 -MC---------AENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSL------LRH--KRVVSSLSDM-TCGSVF  813 (957)
Q Consensus       753 -l~---------a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKsL------LR~--~~a~S~l~d~-~~g~~F  813 (957)
                       |-         .+.++.|...|.-...   .|.-+..++-+-+++++|+..      ...  |.  |.+... .+| ..
T Consensus       262 ~LPG~PDNIR~~~~G~fWVal~~~~~~~---~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~--~~V~~~d~~G-~i  335 (376)
T KOG1520         262 GLPGYPDNIRRDSTGHFWVALHSKRSTL---WRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPH--SAVKLSDETG-KI  335 (376)
T ss_pred             CCCCCCCCEEECCCCCEEEEEECCCCHH---HHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCC--EEEEEECCCC-CE
T ss_conf             5999986531989998899874266567---8765118279888876131033333343257873--5899955898-48


Q ss_pred             EECCCCCC
Q ss_conf             35157764
Q gi|254781051|r  814 QAVLSDDA  821 (957)
Q Consensus       814 ~~vi~d~~  821 (957)
                      -+++.|..
T Consensus       336 l~~lhD~~  343 (376)
T KOG1520         336 LESLHDKE  343 (376)
T ss_pred             EEEEECCC
T ss_conf             89983588


No 222
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found  primarily in archaea and a few bacteria,  lacks both the KMSKS motif and the HIGH loop lysine.
Probab=29.57  E-value=34  Score=13.60  Aligned_cols=20  Identities=5%  Similarity=-0.162  Sum_probs=11.7

Q ss_pred             HHHHHHHHCCCHHHCCCCCC
Q ss_conf             99999988170454016777
Q gi|254781051|r  103 KMIDAYRSYGHFKANIDPLG  122 (957)
Q Consensus       103 ~LI~AYR~~GHl~A~lDPLg  122 (957)
                      .|.|-++..||..-..+=+|
T Consensus        28 slaril~~~G~~V~r~~yvn   47 (267)
T cd00671          28 SLARILEFAGYDVTREYYIN   47 (267)
T ss_pred             HHHHHHHHCCCEEEEEEECC
T ss_conf             99999998799588988507


No 223
>pfam00425 Chorismate_bind chorismate binding enzyme. This family includes the catalytic regions of the chorismate binding enzymes anthranilate synthase, isochorismate synthase, aminodeoxychorismate synthase and para-aminobenzoate synthase.
Probab=29.46  E-value=17  Score=15.87  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             CCHHHC-CCEEECCCCCCCCCCCHHHHHHHHHH----HHCCCEEE
Q ss_conf             997881-71572566578777789999999998----40643027
Q gi|254781051|r  140 FVKADY-DRKICMKGVLGLESATIPEIVDVLSH----LYCSNIGV  179 (957)
Q Consensus       140 Lse~DL-d~~f~~~~~~g~~~~tL~eIi~~L~~----tYCgsIGv  179 (957)
                      .+..|+ ..-++++.+.|.+...-.++|..++.    .|||.+|+
T Consensus       163 ~~~~~ll~~lhPt~av~G~Pk~~A~~~I~~~E~~~Rg~Y~G~~G~  207 (239)
T pfam00425       163 LSLLDLLAALHPTGAVTGAPKKRAMEIIAELEPFDRGLYAGAVGW  207 (239)
T ss_pred             CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             898999997299866788976999999998559988775789999


No 224
>PRK06923 isochorismate synthase DhbC; Validated
Probab=29.42  E-value=21  Score=15.21  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=8.5

Q ss_pred             EEEECCCC--CCCCCHHHH
Q ss_conf             88625753--334672588
Q gi|254781051|r  373 LIIHGDAA--FAGQGIVSE  389 (957)
Q Consensus       373 iliHGDAA--faGQGVV~E  389 (957)
                      .++.|+.+  |+|=|||++
T Consensus       350 a~v~~~~~~l~AGaGIV~d  368 (399)
T PRK06923        350 AEVEENTLRLYAGAGVVAG  368 (399)
T ss_pred             EEEECCEEEEEEEEEEECC
T ss_conf             9998999999976689678


No 225
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.10  E-value=27  Score=14.31  Aligned_cols=61  Identities=11%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             9986448989899999999999997756665412587656666568626667789999999988743689986
Q gi|254781051|r  509 DSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSF  581 (957)
Q Consensus       509 ~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f  581 (957)
                      +.|+++|.++++.+++....+..    -.+..+.|.|+        +...-|||+.+.+++++..+.+-+...
T Consensus       225 ~~ii~~~~~D~~fv~~~t~gfe~----~~~~v~~~tpe--------~aa~itGv~~~~I~~lA~~~a~~~~~~  285 (565)
T cd02754         225 HVLIEEGLIDRDFIDAHTEGFEE----LKAFVADYTPE--------KVAEITGVPEADIREAARLFGEARKVM  285 (565)
T ss_pred             EEEEECCCCCHHHHHHCCCCHHH----HHHHHHCCCHH--------HHHHHCCCCHHHHHHHHHHHHHCCCCE
T ss_conf             58420565142346641442677----77776328887--------766752988899999999987177718


No 226
>KOG2560 consensus
Probab=29.05  E-value=25  Score=14.64  Aligned_cols=87  Identities=11%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             33467258876451067744365799984160201247010246778400112203405874267889999999999999
Q gi|254781051|r  381 FAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF  460 (957)
Q Consensus       381 faGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~y  460 (957)
                      ++||++-++.+||---.+|.-|+-+|+|-+        |                         .-.|.+....+.+-++
T Consensus       291 ~SGe~~~~~qlq~FAweA~~kG~~~H~~A~--------P-------------------------tk~Ell~k~~k~kke~  337 (529)
T KOG2560         291 NSGEALEFNQLQMFAWEAFDKGVDVHMQAD--------P-------------------------TKLELLYKENKVKKET  337 (529)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEECC--------C-------------------------HHHHHHHHHHHHHHHH
T ss_conf             053145579988999998605640232138--------0-------------------------7888999873888999


Q ss_pred             HHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             9973897399864211256564354223557888886718
Q gi|254781051|r  461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSH  500 (957)
Q Consensus       461 R~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~h  500 (957)
                      =++-.++-++|-.|=--++--+.++--.+|-.-|-.+..+
T Consensus       338 lK~q~kq~il~kYG~~~~~d~~p~elll~qte~~iey~rk  377 (529)
T KOG2560         338 LKKQTKQEILDKYGGGEHKDLPPKELLLAQTEEYIEYSRK  377 (529)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHC
T ss_conf             9887789998612875224457676650132788887641


No 227
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=28.88  E-value=35  Score=13.52  Aligned_cols=67  Identities=19%  Similarity=0.374  Sum_probs=43.4

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCC-CCEE
Q ss_conf             886358315785010022333230279997788844556344278984599982431111013432022113865-3111
Q gi|254781051|r  616 SLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLN-ALTI  694 (957)
Q Consensus       616 SLl~eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~-~L~i  694 (957)
                      ..+..|-.|.++|-..+=|--.--+|+.-....+..|         .+.+.+-++.      .-|||=|-+.+.+ ..++
T Consensus         9 p~~~~Gq~v~vvG~~~~LG~W~~~~a~~L~~~~~~~W---------~~~v~lp~~~------~~~EYKyvi~~~~~~~~~   73 (99)
T cd05816           9 PYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIW---------EADIDISKDS------FPFEYKYIIANKDSGVVS   73 (99)
T ss_pred             CCCCCCCEEEEECCHHHHCCCCHHHCEECCCCCCCCE---------EEEEEECCCC------CCEEEEEEEEECCCCEEE
T ss_conf             8789999999987958987997555662578889989---------9999978999------658999999969999189


Q ss_pred             ECC
Q ss_conf             000
Q gi|254781051|r  695 WEA  697 (957)
Q Consensus       695 WEA  697 (957)
                      ||.
T Consensus        74 WE~   76 (99)
T cd05816          74 WEN   76 (99)
T ss_pred             EEC
T ss_conf             702


No 228
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=28.80  E-value=35  Score=13.51  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             HHHHHHHHCCCC-CCCCCCCCCCCCCCCEEEEEEECCCEEEEE
Q ss_conf             899999855887-432234555100150268898359618999
Q gi|254781051|r  286 PRSIFYEFKGKG-PSEKEYSGDVKYHLGLCCNRQICGKDVKLL  327 (957)
Q Consensus       286 ~~~iF~EF~g~~-~~~~~~sGDVKYHLG~s~~~~~~g~~v~ls  327 (957)
                      .+.|++...|.. |.++.+ ||+.||+|-..     +++|+|+
T Consensus       146 A~~lL~~L~G~~~P~~WqG-g~~tY~~Gpg~-----~~~v~l~  182 (183)
T cd02128         146 AAKLLSKMGGPVCPSGWKG-GDSTCRLGTSS-----SKNVKLT  182 (183)
T ss_pred             HHHHHHHCCCCCCCCCCCC-CCCCEEECCCC-----CCEEEEE
T ss_conf             9999997599989813417-98886747998-----8648875


No 229
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=28.68  E-value=35  Score=13.50  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=10.7

Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             8625753334672588764510677
Q gi|254781051|r  374 IIHGDAAFAGQGIVSETFGLSGLSG  398 (957)
Q Consensus       374 liHGDAAfaGQGVV~Etl~ls~l~g  398 (957)
                      ..-|...++-.-.---.|.|+++|-
T Consensus       442 V~qGEr~~~~dN~~Lg~f~L~gIpp  466 (621)
T PRK05183        442 VVQGERELVSDCRSLARFELRGIPP  466 (621)
T ss_pred             EEEECCHHHHCCCEEEEEEECCCCC
T ss_conf             9973554452472771799779899


No 230
>KOG1119 consensus
Probab=28.49  E-value=15  Score=16.24  Aligned_cols=32  Identities=34%  Similarity=0.661  Sum_probs=23.1

Q ss_pred             CCHHHHHHCCCCCC--CCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf             10134320221138--653111000024424541022565
Q gi|254781051|r  675 QAVLGFEYGYSLNN--LNALTIWEAQFGDFANGAQVILDQ  712 (957)
Q Consensus       675 ~avlgFEyGys~~~--p~~L~iWEAQFGDF~NgAQviiDq  712 (957)
                      -|+-||+|-+.+++  .+.=.+|+      -|||-||||.
T Consensus       122 GGCsGFQYkf~LD~~in~dD~vf~------e~~arVVvD~  155 (199)
T KOG1119         122 GGCSGFQYKFRLDNKINNDDRVFV------ENGARVVVDN  155 (199)
T ss_pred             CCCCCEEEEEEECCCCCCCCEEEE------ECCCEEEEEC
T ss_conf             870335888884477787665786------1880899853


No 231
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=28.39  E-value=36  Score=13.46  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             HHHHHHHHH------HCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999986------44898989999999999999775666541
Q gi|254781051|r  504 LQLYADSLM------KNQVISKQELQSLANNWHKYLEAEYKESE  541 (957)
Q Consensus       504 ~~~Y~~~Li------~~g~it~~e~~~~~~~~~~~l~~~~~~~k  541 (957)
                      ..+|.++|.      ++|+|+++|.+..+.+....|=++.+..+
T Consensus        38 ~~iyrdqL~ELe~d~~~G~l~~~e~~~~r~El~rrLL~d~~~~~   81 (117)
T TIGR03142        38 LAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLADIPAAE   81 (117)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999986998999999999999999986774233


No 232
>PRK13566 anthranilate synthase; Provisional
Probab=28.31  E-value=18  Score=15.65  Aligned_cols=72  Identities=19%  Similarity=0.306  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC---CCCCCCCCCEEEEE--EECCCE
Q ss_conf             9999999987379107998067655268999885379899999855887432234---55510015026889--835961
Q gi|254781051|r  249 AIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEY---SGDVKYHLGLCCNR--QICGKD  323 (957)
Q Consensus       249 ~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~---sGDVKYHLG~s~~~--~~~g~~  323 (957)
                      +.+.+-+....-.+=+||++--       +.--+..+|-++|....-.+|..+.+   -||-.|=.|.|-+.  ...|+.
T Consensus       246 ~V~kake~i~~GDiFQvVlSqr-------f~~~~~~~p~~~Yr~LR~~NPSPYm~~~~~gd~~~lvGsSPE~lvrv~~~~  318 (724)
T PRK13566        246 LVEKAKESFRRGDLFEVVPGQT-------FYEPCERSPSELFRRLKRINPSPYGFLINLGDGEYLVGASPEMFVRVDGRR  318 (724)
T ss_pred             HHHHHHHHHHCCCEEEECCCEE-------ECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCHHEEEEECCE
T ss_conf             9999999985598699847157-------734589999999999970699973899987999889955842508986998


Q ss_pred             EEEE
Q ss_conf             8999
Q gi|254781051|r  324 VKLL  327 (957)
Q Consensus       324 v~ls  327 (957)
                      |...
T Consensus       319 v~t~  322 (724)
T PRK13566        319 VETC  322 (724)
T ss_pred             EEEE
T ss_conf             9995


No 233
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=28.29  E-value=24  Score=14.72  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             CCCCCCCCHHHHHHHCCCCCEEEEEC
Q ss_conf             87656440578875214378269724
Q gi|254781051|r  739 GPEHSSARLERFLQMCAENNMYVANC  764 (957)
Q Consensus       739 GPEHSSaRlERfLQl~a~~N~~V~~~  764 (957)
                      .|+-+-.||||||-++.+.++..+.+
T Consensus       122 ~~~fn~~rieRyLv~a~~~g~~pviv  147 (353)
T PRK01889        122 NHDFNLRRIERYLALAWESGAEPVVV  147 (353)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99979789999999999869967999


No 234
>TIGR00612 ispG_gcpE 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; InterPro: IPR004588   This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0016114 terpenoid biosynthetic process.
Probab=28.26  E-value=36  Score=13.45  Aligned_cols=157  Identities=21%  Similarity=0.267  Sum_probs=87.5

Q ss_pred             CCCHHHCCCCHHHCCCEEECCCC----CCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             67876669997881715725665----787777899999999984064-3027772489989999999984145778887
Q gi|254781051|r  132 ELSPAHYGFVKADYDRKICMKGV----LGLESATIPEIVDVLSHLYCS-NIGVEFMHIVDSIERDWVRNTIEDYDFSSNF  206 (957)
Q Consensus       132 eL~~~~yGLse~DLd~~f~~~~~----~g~~~~tL~eIi~~L~~tYCg-sIGvEymHI~d~eer~Wlq~riE~~~~~~~~  206 (957)
                      ..+|.++|+.+.|..++++++.-    +-+-.-++++|++.+|+.=|. .|||                      |.=++
T Consensus       114 RINPGNig~k~~~~~~~~Y~~~~yA~~~~~~~e~v~~~Ve~ar~~G~a~RIGV----------------------N~GSL  171 (633)
T TIGR00612       114 RINPGNIGFKKKDAKRKIYSDAKYAEILLKVEERVRDVVEKARRHGKAMRIGV----------------------NHGSL  171 (633)
T ss_pred             EECCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC----------------------CCCCC
T ss_conf             43787643467012004564257888630046788999999985789687503----------------------56766


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC----HHHHHHHHHHHHHHHHHCCCC--EEEEECCCC-CHHHHHH
Q ss_conf             988999999999999989999986403362222564----658999999999998737910--799806765-5268999
Q gi|254781051|r  207 SKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADG----SEVIIPAIEEIIRQGVQQGVD--EMILGMAHR-GRLNVLS  279 (957)
Q Consensus       207 s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsLEG----~EslIP~L~~ii~~a~~~Gv~--eiviGMaHR-GRLNVL~  279 (957)
                      +.+-|+++|++=               |.|-|++.-    .|+|+--==.-++.+-+.|..  ++|+-|=== =--+|=|
T Consensus       172 ~~~~~~~ll~~Y---------------g~~~~~~~~qev~~EA~V~SAl~~a~~~e~~~f~rd~~v~S~KaS~v~~~vaA  236 (633)
T TIGR00612       172 EQVLKRRLLEKY---------------GDKGFSLTAQEVTAEAMVQSALESAEILEKLDFRRDNVVLSMKASDVAETVAA  236 (633)
T ss_pred             HHHHHHHHHHHH---------------CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHH
T ss_conf             089999999971---------------54683217431587899999999999998508944607999841876789999


Q ss_pred             HHHCCCHHHHHHHHCC---C-CCCCC-------CCCCCCCCCCCEEEEEEEC-CCEEEEEECCCC
Q ss_conf             8853798999998558---8-74322-------3455510015026889835-961899971787
Q gi|254781051|r  280 QIMNKLPRSIFYEFKG---K-GPSEK-------EYSGDVKYHLGLCCNRQIC-GKDVKLLLQSNP  332 (957)
Q Consensus       280 Nvl~Kp~~~iF~EF~g---~-~~~~~-------~~sGDVKYHLG~s~~~~~~-g~~v~lsL~~NP  332 (957)
                      |       .+|++=.+   - .|..-       +-+|=||.=+|.+.=..-+ |-+|.+||+..|
T Consensus       237 y-------~~lA~~~D~~G~~~PLHLGvTEAG~g~~GivKS~~gig~LL~~GIGDTiRvSLt~~P  294 (633)
T TIGR00612       237 Y-------RLLAERSDELGMLYPLHLGVTEAGMGVKGIVKSSVGIGILLAEGIGDTIRVSLTDDP  294 (633)
T ss_pred             H-------HHHHHHHHHCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             9-------999999865035252425412028888734566789999998458957998537888


No 235
>pfam01786 AOX Alternative oxidase. The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature.
Probab=28.13  E-value=36  Score=13.43  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=14.3

Q ss_pred             HHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCH
Q ss_conf             998817045401677777766787767876669997
Q gi|254781051|r  107 AYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVK  142 (957)
Q Consensus       107 AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse  142 (957)
                      |...|-|...++|--.+.  ....|++...+|+|.+
T Consensus       153 Av~tYT~~l~~id~Gki~--n~~aP~iAi~Yw~L~~  186 (214)
T pfam01786       153 AVVTYTHFLKDIEAGKLP--NVPAPEIAIDYWRLPE  186 (214)
T ss_pred             HHHHHHHHHHHHHCCCCC--CCCCCHHHHHHCCCCC
T ss_conf             898999999998579989--9999778998749997


No 236
>KOG4156 consensus
Probab=28.06  E-value=32  Score=13.79  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             CCCCEEEECCCHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEE--ECCHHHHH
Q ss_conf             4886898566022108012688789379986035157764334445444579545768998--68857899
Q gi|254781051|r  782 SSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVIL--CTGKVYYD  850 (957)
Q Consensus       782 ~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~--csGKvyyd  850 (957)
                      -|-||.-|--..|=-   ..--+.|+.+|+ |-.--.-       ......+.+.++-..+  ||||+--.
T Consensus       892 prlplasmdenamDa---nmDE~~Dl~t~k-~~SQ~~~-------~~~~~sDkke~~E~~~nl~SGkFTsq  951 (1329)
T KOG4156         892 PRLPLASMDENAMDA---NMDELLDLCTGK-FTSQAEK-------HLPRKSDKKENMEELLNLCSGKFTSQ  951 (1329)
T ss_pred             CCCCCCCCCHHHHCC---CCHHHHHHHHCC-CCHHHHC-------CCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf             566533110443314---502777777455-7605540-------69863116789999976326754010


No 237
>COG5097 MED6 RNA polymerase II transcriptional regulation mediator [Transcription]
Probab=28.03  E-value=14  Score=16.51  Aligned_cols=24  Identities=25%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             HHHHHHHHHC-----CCHHHHHHHHHHHC
Q ss_conf             7888886718-----99899999998644
Q gi|254781051|r  491 PMMYKTIRSH-----KSVLQLYADSLMKN  514 (957)
Q Consensus       491 P~mY~~I~~h-----p~v~~~Y~~~Li~~  514 (957)
                      |+||-.|..|     |+...||.-++...
T Consensus        98 pl~~Y~i~g~NIY~aPt~y~i~~~Rm~~s  126 (210)
T COG5097          98 PLMYYIIHGHNIYAAPTNYSIYRCRMGDS  126 (210)
T ss_pred             CCEEEEEECCCEEECCCHHHHHHHHHHHH
T ss_conf             30489996672030762243565553014


No 238
>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181   Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase.     The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA .    The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes .    Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif.    Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process.
Probab=27.96  E-value=22  Score=15.09  Aligned_cols=17  Identities=35%  Similarity=0.722  Sum_probs=13.2

Q ss_pred             CCCCCCEEECCCCCCCC
Q ss_conf             33368135436888888
Q gi|254781051|r  722 LCTSNLVCLLPHGYEGQ  738 (957)
Q Consensus       722 ~~~sglvllLPHGyeGq  738 (957)
                      +-..||.+-||+||+||
T Consensus        45 Lv~TG~~~~lP~g~~g~   61 (151)
T TIGR00576        45 LVPTGIAIELPEGYYGR   61 (151)
T ss_pred             EECCCEEEECCCCCEEE
T ss_conf             75244299848994899


No 239
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875    Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.    PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=27.79  E-value=21  Score=15.11  Aligned_cols=121  Identities=19%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             HHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             99999988170454016777777667877678766699978817157256657877778999999999840643027772
Q gi|254781051|r  103 KMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVEFM  182 (957)
Q Consensus       103 ~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~g~~~~tL~eIi~~L~~tYCgsIGvEym  182 (957)
                      +|+.|=+..|-..+=|||=.   ..|. ..+.         |=...+.....   +..-++++.+     =|.=|.+||-
T Consensus        13 M~~~aA~~LG~~~~VL~~~~---~~PA-~q~A---------d~~~~v~a~~~---d~~~i~~La~-----~cDviT~E~E   71 (386)
T TIGR01161        13 MLALAAKKLGIKVAVLDPDA---NSPA-KQVA---------DSREHVLASFT---DPEAIRELAE-----ACDVITFEFE   71 (386)
T ss_pred             HHHHHHHHCCCEEEEECCCC---CCCC-CCCC---------CCCCEEEEEEC---CHHHHHHHHH-----HCCEEEEEEC
T ss_conf             99998712795899854898---9731-1128---------98557998514---8789999997-----6565543101


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC-C--CHHHHHHHHH
Q ss_conf             4899899999999841457788879889999999999999899999864033622225-6--4658999999
Q gi|254781051|r  183 HIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA-D--GSEVIIPAIE  251 (957)
Q Consensus       183 HI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFsL-E--G~EslIP~L~  251 (957)
                      ||..+.-.+=..+. .+  .+...+.+-=..+.+|+.+=+    ||.+-=.-+=||.+ +  .-+++-.+++
T Consensus        72 hv~~~~L~~L~~~g-~~--~~~~P~~~~l~~~~dk~~qK~----~L~~~g~~vp~f~~~~~~~~~~~~~~~~  136 (386)
T TIGR01161        72 HVDVEALEKLEARG-DK--VKVRPSPEALAIIQDKLTQKQ----FLQKLGLPVPPFVVIEIKDEEELDSALQ  136 (386)
T ss_pred             CCCCHHHHHHHHCC-CE--EEEECCHHHHHHHHCHHHHHH----HHHHCCCCCCCCCEEECCCHHHHHHHHH
T ss_conf             37856789998359-84--776038899998836589999----9996689988412022368425789998


No 240
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=27.68  E-value=19  Score=15.54  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             EECCCCCCCHHHHHHCCCCCCCCCCEEECC
Q ss_conf             824311110134320221138653111000
Q gi|254781051|r  668 VNSFLSEQAVLGFEYGYSLNNLNALTIWEA  697 (957)
Q Consensus       668 ~nS~LSE~avlgFEyGys~~~p~~L~iWEA  697 (957)
                      ......|.|+|.|++-=+..+|+.++++|.
T Consensus        28 v~~sr~EeGcl~Y~l~~d~~~~~~~~~~E~   57 (100)
T COG1359          28 VEASRAEEGCLSYELHRDPDNPGRFVLIEV   57 (100)
T ss_pred             HHHHCCCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf             998706888679999965899978999999


No 241
>KOG3171 consensus
Probab=27.53  E-value=10  Score=17.58  Aligned_cols=91  Identities=18%  Similarity=0.231  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCC--CCCCCCCCCCCCCCE
Q ss_conf             2564658999999999998737---91079980676552689998853798999998558874--322345551001502
Q gi|254781051|r  239 GADGSEVIIPAIEEIIRQGVQQ---GVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGP--SEKEYSGDVKYHLGL  313 (957)
Q Consensus       239 sLEG~EslIP~L~~ii~~a~~~---Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~--~~~~~sGDVKYHLG~  313 (957)
                      |+.|||+|--.|.-+-.....-   .++.-++||.-|=|||||-.++=..-..+...|--...  .+.-..|||..-|--
T Consensus       170 gi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e  249 (273)
T KOG3171         170 GIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE  249 (273)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98427888656878650587236787520243414443016774589850872467899999997555526669999977


Q ss_pred             EEEEEECCCEEEEEECCC
Q ss_conf             688983596189997178
Q gi|254781051|r  314 CCNRQICGKDVKLLLQSN  331 (957)
Q Consensus       314 s~~~~~~g~~v~lsL~~N  331 (957)
                      -.  -.+-+.||+.-.-|
T Consensus       250 ~g--llpe~ev~vl~s~~  265 (273)
T KOG3171         250 YG--LLPEREVHVLESTK  265 (273)
T ss_pred             CC--CCCCCCEEEECCCC
T ss_conf             48--87102413431566


No 242
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=27.20  E-value=29  Score=14.09  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=35.7

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECC
Q ss_conf             88625753334672588764510677443657999841602012
Q gi|254781051|r  373 LIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFT  416 (957)
Q Consensus       373 iliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFT  416 (957)
                      +-|-+..-|+|-||+.+-++..+..|-.+-|-|-||..|.-++.
T Consensus        20 ~~v~a~~VfvGyGi~a~e~~~dDy~g~Dv~GKivv~l~g~P~~~   63 (137)
T cd04820          20 ASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGI   63 (137)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             55403379872582676458432258765787899982799877


No 243
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.13  E-value=24  Score=14.74  Aligned_cols=15  Identities=20%  Similarity=0.282  Sum_probs=8.4

Q ss_pred             HHCCCCCCCCCCEEE
Q ss_conf             202211386531110
Q gi|254781051|r  681 EYGYSLNNLNALTIW  695 (957)
Q Consensus       681 EyGys~~~p~~L~iW  695 (957)
                      --|-|++.|.+.|+.
T Consensus       397 RvGRs~~~PtGdv~F  411 (441)
T COG4098         397 RVGRSLERPTGDVLF  411 (441)
T ss_pred             HCCCCCCCCCCCEEE
T ss_conf             316787689875899


No 244
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=27.12  E-value=37  Score=13.30  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=63.7

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCEEE-EEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHH-HHHHHHHHH
Q ss_conf             33467258876451067744365799-9841602012470102467784001122034058742678899-999999999
Q gi|254781051|r  381 FAGQGIVSETFGLSGLSGYTVAGNIH-LIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEA-VIRVVRMAV  458 (957)
Q Consensus       381 faGQGVV~Etl~ls~l~gY~tGGTiH-iVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEa-v~~~~~lA~  458 (957)
                      +||.|-.++.+--+.-.|-- ...|- ||.||            +..++-..|+-.+.|.+++|-.+-+. ..+-.++ +
T Consensus         8 ~SG~GSNl~aii~a~~~~~l-~~~i~~Visn~------------~~a~~l~~A~~~~Ip~~~i~~~~~~~r~~~d~~i-~   73 (200)
T PRK05647          8 ASGNGSNLQAIIDACAAGQL-PAEVVAVISDR------------PDAYGLERAEQAGIPTFVLDHKDFPSREAFDAAL-V   73 (200)
T ss_pred             ECCCCHHHHHHHHHHHCCCC-CCEEEEEEECC------------CCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH-H
T ss_conf             91580449999999875999-94899999789------------7536659999759976996776679989999999-9


Q ss_pred             HHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
Q ss_conf             99997389739986421125656435422355788888671899899999
Q gi|254781051|r  459 SFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYA  508 (957)
Q Consensus       459 ~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~  508 (957)
                      +.-.++.-|.+ =|.||-|-=     -|.|.+-.--+.|.-||+.+-.|.
T Consensus        74 ~~L~~~~vDlI-vLAGyMril-----~~~~l~~~~~kIiNiHPsLLP~f~  117 (200)
T PRK05647         74 EALDAYEPDLV-VLAGFMRIL-----GPTFVSAYEGRIINIHPSLLPSFP  117 (200)
T ss_pred             HHHHHCCCCEE-EECCHHHHC-----CHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             99986499999-998813338-----989995377995677542035888


No 245
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.10  E-value=25  Score=14.65  Aligned_cols=53  Identities=34%  Similarity=0.509  Sum_probs=40.7

Q ss_pred             CCCCCCCCCCC----------HHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCCCCCCHHHHHHHCC
Q ss_conf             00024424541----------0225655420257623336813543688-888887656440578875214
Q gi|254781051|r  696 EAQFGDFANGA----------QVILDQFITAGEQKWLCTSNLVCLLPHG-YEGQGPEHSSARLERFLQMCA  755 (957)
Q Consensus       696 EAQFGDF~NgA----------QviiDqfiss~e~KW~~~sglvllLPHG-yeGqGPEHSSaRlERfLQl~a  755 (957)
                      -.|||+-+|-.          |-++|+..+|+       ++||-.-|-| -||-||+---||||--|+-.+
T Consensus       313 ~~qF~~~AnamvsA~~~pd~nagl~~rL~~Sa-------~slVsVRpVGsveG~t~~a~iARmEa~L~~GD  376 (422)
T COG4223         313 ATQFGAVANAMVSASNNPDPNAGLFDRLRSSA-------SSLVSVRPVGSVEGSTPDAMIARMEAALDNGD  376 (422)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-------HCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             99878899899973348998702999999987-------43512432255578984068999999875445


No 246
>pfam12550 GCR1_C Transcriptional activator of glycolytic enzymes. This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=26.83  E-value=24  Score=14.72  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             HHHCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             873805079899999873676433
Q gi|254781051|r   30 YQEDPSSVCKDWYPLFSFLDENSE   53 (957)
Q Consensus        30 YL~DP~SVd~sWr~fF~~l~~~~~   53 (957)
                      ...+|.||.+-|++|+.+++..++
T Consensus         4 m~~~~~tV~eiw~Ew~~g~~g~ps   27 (81)
T pfam12550         4 MSRDIKTVYELWREWYTGLNGQPS   27 (81)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             678858699999999865589986


No 247
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=26.77  E-value=38  Score=13.26  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             EEEECCCCCHHHHHHHHHHHCC----CCE-EEEECCCCCCCCCHHHHHHHHHHHHHHC----CCCCCEEEEEECC
Q ss_conf             9840148682899999985379----983-9980678531784578997699998750----5677601897536
Q gi|254781051|r  866 LRIEQLYPFPEDYLIKVLSRFV----QAE-IVWCQEEPQNMGAWTFIEPYLEKVLHSI----GADYSRVRYVGRL  931 (957)
Q Consensus       866 vRiEqLyPfP~~~l~~~l~~y~----~~e-~vW~QEEp~N~GaW~~v~~rl~~~l~~~----~~~~~~~~y~gR~  931 (957)
                      +.++.=.||..+.|...|...+    .++ ++|+.+.|.--..|.+|..++.---...    +....+|-.||+.
T Consensus         4 ~~~~~~~p~d~~~l~~~l~~l~~~ilR~KG~~~~~~~~~~~~~~q~v~~~~~~~~~~~w~~~~~~~s~LVfIG~~   78 (92)
T smart00833        4 FVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLRIEPAGAWPAAGDRRTRLVFIGRD   78 (92)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf             999789999989999999864006289768999379986899997327364246667544689853489999469


No 248
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=26.75  E-value=38  Score=13.26  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8888671899899999998644898989999999999999775666
Q gi|254781051|r  493 MYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK  538 (957)
Q Consensus       493 mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~  538 (957)
                      +|+.|..   .+.--.+++++.|+||++..+.|.+....+++..-+
T Consensus        12 l~kqi~e---l~Kqii~KyVe~G~iT~eQa~~i~~~id~r~~~~~q   54 (59)
T pfam10925        12 LYKQIAE---LRKQVIDKYVEAGVITKEQADHIKKNIDKRVEYMKQ   54 (59)
T ss_pred             HHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999---999999999982756499999999999999999998


No 249
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=26.68  E-value=38  Score=13.25  Aligned_cols=40  Identities=28%  Similarity=0.436  Sum_probs=24.2

Q ss_pred             CCHHCCCCCCCCHHHHHHCCCE-EEECCCCHHHHHHHHHHH
Q ss_conf             7010246778400112203405-874267889999999999
Q gi|254781051|r  418 NPSSARSCTYASDISKSIGIPI-FHVNGDDPEAVIRVVRMA  457 (957)
Q Consensus       418 ~p~d~RSs~Y~TDiAK~i~aPI-~HVN~DdpEav~~~~~lA  457 (957)
                      +|+....-..-.||.+.+..|- ..++.|--+|.-++..+|
T Consensus       396 npR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a  436 (475)
T COG0769         396 NPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLA  436 (475)
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf             98876889999999836476641430110999999999863


No 250
>pfam06785 UPF0242 Uncharacterized protein family (UPF0242).
Probab=26.64  E-value=18  Score=15.69  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=55.8

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf             66778999999998874368998620567788899899873343564211478988898863583157850100223332
Q gi|254781051|r  558 RKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFS  637 (957)
Q Consensus       558 ~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFs  637 (957)
                      .+|.-+.+.|..+...+.+  |+-.+.-++..+...+.+..+....++--.||+|||---|.|-|          ..||+
T Consensus       123 ~ktK~~~q~lE~l~~hl~E--ENqcLq~Qldal~qEc~EK~ee~q~LnrELae~LAYQQ~LndEY----------QATF~  190 (401)
T pfam06785       123 IKTKGRYQKLEELSRHLKE--ENQCLQIQLDALVQECNEKIEENQELNRELAETLAYQQELNDEY----------QATFV  190 (401)
T ss_pred             HHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_conf             7404518679999998887--64789999999999976668889999999999999999986899----------87899


Q ss_pred             CCEEEEE
Q ss_conf             3027999
Q gi|254781051|r  638 HRHAILC  644 (957)
Q Consensus       638 hRHavl~  644 (957)
                      -.|.+|-
T Consensus       191 EQhnMLD  197 (401)
T pfam06785       191 EQHNMLD  197 (401)
T ss_pred             HHHHHHH
T ss_conf             9874268


No 251
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=26.53  E-value=38  Score=13.23  Aligned_cols=41  Identities=15%  Similarity=0.034  Sum_probs=19.6

Q ss_pred             HHHHCCCHHHCCCCCCCCCC----CCCCCCCCHHHCCCCH-HHCCC
Q ss_conf             99881704540167777776----6787767876669997-88171
Q gi|254781051|r  107 AYRSYGHFKANIDPLGYNSH----QKDLSELSPAHYGFVK-ADYDR  147 (957)
Q Consensus       107 AYR~~GHl~A~lDPLgl~~~----~~~~peL~~~~yGLse-~DLd~  147 (957)
                      ..+...+..+.++=|--..+    +-...++..+-||+++ +|++.
T Consensus        68 ~~~~k~~~~~~le~l~~ak~~~~vkv~AC~mtmdl~Gi~k~d~~~~  113 (137)
T COG2210          68 KKMMKKKNVAWLELLREAKKDGGVKVYACSMTMDLMGISKEDDLDD  113 (137)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHCCCHHHHCCC
T ss_conf             9999852520799999875616928997053798858872654245


No 252
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.42  E-value=38  Score=13.22  Aligned_cols=16  Identities=19%  Similarity=0.148  Sum_probs=7.6

Q ss_pred             HHHHHCCCHHHCCCCCC
Q ss_conf             99988170454016777
Q gi|254781051|r  106 DAYRSYGHFKANIDPLG  122 (957)
Q Consensus       106 ~AYR~~GHl~A~lDPLg  122 (957)
                      .|||+..+. .++=||+
T Consensus        40 ~afRRL~~K-TQVf~~~   55 (338)
T PRK01286         40 KAFRRLKHK-TQVFINH   55 (338)
T ss_pred             HHHHCCCCC-CEECCCC
T ss_conf             877614567-7364079


No 253
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.23  E-value=39  Score=13.19  Aligned_cols=109  Identities=16%  Similarity=0.216  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCE-ECC
Q ss_conf             0445532367777641666544555654454047888625753334672588764510677443657999841602-012
Q gi|254781051|r  338 VDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQI-GFT  416 (957)
Q Consensus       338 VnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQI-GFT  416 (957)
                      .-||+.|.-+|.-|                  ..-|..-||.-..|-|...=.-.+-+     -=.-..||+|||| |-|
T Consensus        69 alp~AtGiK~anPd------------------L~Viv~~GDGD~~~IGgnH~iHA~RR-----N~dit~Iv~nN~iYGlT  125 (284)
T PRK11869         69 AIPAATAVKATNPN------------------LTVIAEGGDGDMYAEGGNHLIHAIRR-----NPDITVLIHNNQIYGLT  125 (284)
T ss_pred             HHHHHHHHHHHCCC------------------CEEEEEECCCHHHHHHHHHHHHHHHC-----CCCCEEEEECCEECCCC
T ss_conf             07889999876899------------------76999812661543028889999974-----89808999888100115


Q ss_pred             C------CCHH--CCCCCCCC--------HHHHHHCCCEE-EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             4------7010--24677840--------01122034058-742678899999999999999973897399864
Q gi|254781051|r  417 T------NPSS--ARSCTYAS--------DISKSIGIPIF-HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIV  473 (957)
Q Consensus       417 T------~p~d--~RSs~Y~T--------DiAK~i~aPI~-HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv  473 (957)
                      .      +|..  ..|++|-.        .+|...+|+-. ..-.-||+......+-|++    ++-=-+||++
T Consensus       126 kGQ~SPTt~~G~~T~t~P~G~~e~p~np~~la~a~GatfVAR~~~~~~~~l~~~ik~Ai~----hkGfs~VeVl  195 (284)
T PRK11869        126 KGQASPTTLKGTKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIIKEAIK----HKGLAIVDIF  195 (284)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC----CCCCEEEEEE
T ss_conf             798898999988055788998889979999999769978998712899999999999967----9981799996


No 254
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.19  E-value=39  Score=13.19  Aligned_cols=209  Identities=15%  Similarity=0.200  Sum_probs=114.0

Q ss_pred             HHCCCCCCCCCEEEEEECC------------CEECCCCCHHCCCCCCCC--HHHHH----HCCCEEEECCCCHHHHHHHH
Q ss_conf             5106774436579998416------------020124701024677840--01122----03405874267889999999
Q gi|254781051|r  393 LSGLSGYTVAGNIHLIINN------------QIGFTTNPSSARSCTYAS--DISKS----IGIPIFHVNGDDPEAVIRVV  454 (957)
Q Consensus       393 ls~l~gY~tGGTiHiVvNN------------QIGFTT~p~d~RSs~Y~T--DiAK~----i~aPI~HVN~DdpEav~~~~  454 (957)
                      ---|.|-+++|++|+-+--            +|-.|      -|-+++|  |+|-.    -++|||-..|+++|.--.+.
T Consensus        40 ~kPlkG~rI~~~LHlt~kTAvL~~tL~~~GA~V~~~------~~Np~STQDdvaAAL~~~~gi~VfA~kget~eey~~~~  113 (476)
T PTZ00075         40 SKPLKGAKIAGCLHMTVETAVLIETLVALGAEVRWC------SCNIFSTQDNAAAAIAKKGGVTVFAWKGETIEEYWWCI  113 (476)
T ss_pred             CCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEE------CCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf             699899989999822899999999999859869996------47975436699999886079269995799989999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH--HHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999999973897399864211256564354223557888886718998999999--98644898989999999999999
Q gi|254781051|r  455 RMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYAD--SLMKNQVISKQELQSLANNWHKY  532 (957)
Q Consensus       455 ~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~--~Li~~g~it~~e~~~~~~~~~~~  532 (957)
                      .-|++|-..-+-|++||==|         |        ++..|.+-.-....|.+  +|-.-.....++.    +.....
T Consensus       114 ~~~L~~~~~~~P~iiiDDGg---------D--------l~~llH~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~  172 (476)
T PTZ00075        114 EQTLKWSDDGGPNLIVDDGG---------D--------LTNLVHDGVKLEKMYEKKGKLPDPSVAEPEDN----RCLLTF  172 (476)
T ss_pred             HHHHHCCCCCCCCEEEECCC---------H--------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH----HHHHHH
T ss_conf             99973466889877981561---------2--------77887521121012001356778766751788----999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             775666541258765666656862666778999999998874368998620567788-8998998733435642114789
Q gi|254781051|r  533 LEAEYKESESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVER-LMANRQKMIETGKGIDWSMAES  611 (957)
Q Consensus       533 l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k-~~~~R~~~~~~~~~iDW~~AE~  611 (957)
                      |........+..|+-........+...|||  .+|+.+.+.-.-.=+-++++.-+.| .+++|-..-++  -+|.=+   
T Consensus       173 l~~~~~~~~~~~~~l~~~i~G~sEETTTGV--~RL~am~~~g~L~fP~i~VNDs~tK~~FDNrYGtgqS--~~dgi~---  245 (476)
T PTZ00075        173 LNHLVTKNPNKWPNLVKKIVGVSEETTTGV--KNLYKMLKKGKLLFPAINVNDSVTKSKFDNLYGCRES--LVDGIK---  245 (476)
T ss_pred             HHHHHHHCCCCCHHHHHHEECCCCCHHHHH--HHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCHHHH--HHHHHH---
T ss_conf             998874155201467851004000544759--9999998779602118998765552340222211365--999999---


Q ss_pred             HHHHHHHHCCCEEEEEC-CCCCCCCC
Q ss_conf             88898863583157850-10022333
Q gi|254781051|r  612 LAFGSLCYEGYKVRLSG-QDCERGTF  636 (957)
Q Consensus       612 LA~~SLl~eG~~VRlsG-QD~~RGTF  636 (957)
                       -.--+|..|-.|=..| -||+||.=
T Consensus       246 -raTn~liaGK~vVV~GYG~~GkG~A  270 (476)
T PTZ00075        246 -RATDVMIAGKTVVVCGYGDVGKGCA  270 (476)
T ss_pred             -HHHCCEECCCEEEEEECCCCCHHHH
T ss_conf             -8628345475899950453012147


No 255
>PRK03906 mannonate dehydratase; Provisional
Probab=26.19  E-value=27  Score=14.32  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             9999999840643027772489989999999984
Q gi|254781051|r  164 EIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTI  197 (957)
Q Consensus       164 eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~ri  197 (957)
                      +.|..|-+.=-.+|.|-||=+-|     |.|..+
T Consensus        87 ~sirNLa~~GI~viCYNFMPv~D-----WtRTdL  115 (389)
T PRK03906         87 QTLRNLAAAGIKVVCYNFMPVFD-----WTRTDL  115 (389)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCC-----CCCCCC
T ss_conf             99999997699789650366465-----003656


No 256
>PRK01184 hypothetical protein; Provisional
Probab=26.16  E-value=13  Score=16.68  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             EECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHH-HH----------HHHHHHHHHHHHHHCCCEEE
Q ss_conf             201247010246778400112203405874267889-99----------99999999999973897399
Q gi|254781051|r  413 IGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPE-AV----------IRVVRMAVSFRMKFHKSVVI  470 (957)
Q Consensus       413 IGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpE-av----------~~~~~lA~~yR~~F~kDVvI  470 (957)
                      ||+|-.|--+.|+  .+++++-.++||+  ..+|.- ..          -....++.+.|++|+.|++.
T Consensus         4 IGlTG~iGSGKst--va~i~~e~G~~vi--~~~Divr~~v~~~g~~~~~~~~~~~~~~lR~~~G~~~~a   68 (183)
T PRK01184          4 IIVTGMPGSGKGE--FSKIARELGIPVV--VMGDVIREEVKKRGLPPTDENIGKVATDLRKELGMDAVA   68 (183)
T ss_pred             EEEECCCCCCHHH--HHHHHHHCCCEEE--ECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf             9996899887899--9999997799399--860778999998389997789999999999871955899


No 257
>pfam11339 DUF3141 Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.11  E-value=11  Score=17.43  Aligned_cols=42  Identities=19%  Similarity=0.179  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             8999999999999999738973998642112565643542235578888867189989
Q gi|254781051|r  447 PEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVL  504 (957)
Q Consensus       447 pEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~  504 (957)
                      =++|.++.++....=..|-.-.|=                .++.|.+-+.+++.-+.+
T Consensus       426 F~~VarvSe~n~~~Y~~fv~P~vr----------------a~~tp~~A~~lr~~HPlR  467 (581)
T pfam11339       426 FAAVARVSEINLALYDLFVQPWVR----------------AAVTPQSAELLRELHPLR  467 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------------HHCCHHHHHHHHHHCCHH
T ss_conf             799999999999999998759999----------------736999999999859147


No 258
>KOG4269 consensus
Probab=25.69  E-value=25  Score=14.56  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=14.7

Q ss_pred             HHHHHHHHHH-HCCCCCEEEEEEEC
Q ss_conf             7899999999-76998689998401
Q gi|254781051|r  847 VYYDLLDNRD-MRNIADIYLLRIEQ  870 (957)
Q Consensus       847 vyydL~~~r~-~~~~~~vaivRiEq  870 (957)
                      |-|--+++.+ .+|++.+.|-||--
T Consensus       922 VVyrCvEyle~~RgieEeGIyRlSG  946 (1112)
T KOG4269         922 VVYRCVEYLESCRGIEEEGIYRLSG  946 (1112)
T ss_pred             HHHHHHHHHHHCCCCCHHCEEEECC
T ss_conf             8999999998614620204477325


No 259
>KOG3350 consensus
Probab=25.64  E-value=39  Score=13.12  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=40.1

Q ss_pred             HHHCCCCCEEECCCCCCCCCCC----CCCCC--CCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
Q ss_conf             8937998603515776433444----54445--79545768998688578999999997699868999840148682899
Q gi|254781051|r  805 SDMTCGSVFQAVLSDDAEYHGK----TSVKL--KEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDY  878 (957)
Q Consensus       805 ~d~~~g~~F~~vi~d~~~~~~~----~~~~~--~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqLyPfP~~~  878 (957)
                      +++. + .|..||.||....-.    +..++  -... -+|||+|||-+--+.+.++-.        |+.--.-|=....
T Consensus       130 ~~lk-~-~fdiivaDPPfL~~eCl~Kts~tik~L~r~-~~kvilCtGeimee~~s~~l~--------~~~~sF~PeH~~n  198 (217)
T KOG3350         130 DELK-A-HFDIIVADPPFLSEECLAKTSETIKRLQRN-QKKVILCTGEIMEEWASALLP--------VLKCSFRPEHERN  198 (217)
T ss_pred             HHHH-H-CCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHH--------HHHCCCCCHHHCC
T ss_conf             9997-4-016897178654616666668999997068-853998340676899998753--------3210013544305


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99998537998
Q gi|254781051|r  879 LIKVLSRFVQA  889 (957)
Q Consensus       879 l~~~l~~y~~~  889 (957)
                      |.....-|.|-
T Consensus       199 LaNeF~cyaNf  209 (217)
T KOG3350         199 LANEFRCYANF  209 (217)
T ss_pred             CCCCEEEEEEC
T ss_conf             35001577742


No 260
>PRK06389 argininosuccinate lyase; Provisional
Probab=25.55  E-value=40  Score=13.10  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=17.4

Q ss_pred             CCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             5404788862575333467258876451067744
Q gi|254781051|r  367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYT  400 (957)
Q Consensus       367 ~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~  400 (957)
                      +-.+.|+   |-||.+|-..-----.++++=||.
T Consensus       183 r~n~~PL---GsgA~aGt~~piDR~~~a~~LGF~  213 (434)
T PRK06389        183 DLREMPY---GYGSGYGSPSSVKFNQMSELLGME  213 (434)
T ss_pred             HHCCCCC---CCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf             6144875---300025888876889999982999


No 261
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=25.51  E-value=40  Score=13.10  Aligned_cols=300  Identities=17%  Similarity=0.218  Sum_probs=148.4

Q ss_pred             CCCCHHHHHHHHHHH-HCCCEEEEEECCCCHHHHH---HHHHHHCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             777899999999984-0643027772489989999---999984145778------887988999999999999989999
Q gi|254781051|r  158 ESATIPEIVDVLSHL-YCSNIGVEFMHIVDSIERD---WVRNTIEDYDFS------SNFSKEEQRDILDKLVRAEGFEKF  227 (957)
Q Consensus       158 ~~~tL~eIi~~L~~t-YCgsIGvEymHI~d~eer~---Wlq~riE~~~~~------~~~s~eeK~~iL~~L~~Ae~FE~F  227 (957)
                      .+..|.+|++.|+.. |-...=+-|-||---..|+   =+...+|.....      .+.-..+.+++-+.|+++.     
T Consensus        62 ~~~dL~elV~~l~~~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g-----  136 (652)
T COG1166          62 ARVDLAELVKALRDRGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASG-----  136 (652)
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCC-----
T ss_conf             522099999999965789856985269999999999999999999808898605898766554188999998636-----


Q ss_pred             HHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHCCCHH----------HHHHHHC-
Q ss_conf             9864033622225646589999999999987379107998067655--26899988537989----------9999855-
Q gi|254781051|r  228 IDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRG--RLNVLSQIMNKLPR----------SIFYEFK-  294 (957)
Q Consensus       228 L~~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRG--RLNVL~Nvl~Kp~~----------~iF~EF~-  294 (957)
                            --.-||||-|--  |-|=..+..+..-|.-=||=|---|.  ||-.+.--||..+-          .+..|=+ 
T Consensus       137 ------~~~~~GLEAGSK--~ELm~vLA~~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~Vl~eA~~  208 (652)
T COG1166         137 ------KGYPLGLEAGSK--AELMAVLAHAGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQ  208 (652)
T ss_pred             ------CCCCCCCCCCCH--HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             ------898776667887--999999983389997178457460999999999998279549999226799999999997


Q ss_pred             -CCCCC-------------CCCCCCCCCCCCCEEEEE--E----E--CC-----CEEEEEECCCCCCCHHCCHHHHHHHH
Q ss_conf             -88743-------------223455510015026889--8----3--59-----61899971787731000445532367
Q gi|254781051|r  295 -GKGPS-------------EKEYSGDVKYHLGLCCNR--Q----I--CG-----KDVKLLLQSNPSHLEFVDPVVIGSVR  347 (957)
Q Consensus       295 -g~~~~-------------~~~~sGDVKYHLG~s~~~--~----~--~g-----~~v~lsL~~NPSHLEaVnPVv~G~~R  347 (957)
                       |..|.             .+..||--|.-.|.|+.-  +    .  .+     .-+|..|   -|-+-.+.+|..|.--
T Consensus       209 lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHl---GSQisnI~~ik~~~rE  285 (652)
T COG1166         209 LGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATQVLQVVERLREANLLDSLQLLHFHL---GSQISNIRDIKTGVRE  285 (652)
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH---CCHHHHHHHHHHHHHH
T ss_conf             3999763368886235567500046831014888899999999987626577667876410---0013456999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCC
Q ss_conf             77764166654455565445404788862575333467258876451067744365799984160201247010246778
Q gi|254781051|r  348 ARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTY  427 (957)
Q Consensus       348 AkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y  427 (957)
                      |-|.+..=.             -             -|        .++..+.+||-+          -.+..-+||..|
T Consensus       286 A~r~YvEL~-------------k-------------lG--------a~i~~~dVGGGL----------gVDYdGt~t~~~  321 (652)
T COG1166         286 AARFYVELR-------------K-------------LG--------ANIKYFDVGGGL----------GVDYDGTRTQSD  321 (652)
T ss_pred             HHHHHHHHH-------------H-------------CC--------CCCEEEECCCCE----------EECCCCCCCCCC
T ss_conf             999999999-------------8-------------27--------886078516844----------332167644663


Q ss_pred             CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEE---------------EEEECCCCCCCCCCCCCCCCHH
Q ss_conf             4001122034058742678899999999999999973897399---------------8642112565643542235578
Q gi|254781051|r  428 ASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVI---------------DIVCYRRFGHNEGDEPSFTQPM  492 (957)
Q Consensus       428 ~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvI---------------Dlv~YRr~GHNE~DeP~fTQP~  492 (957)
                      ||-==-+         -+-.-.||+..+=|++=++-=+-+||+               +.++--|+.-|  |.|..--|.
T Consensus       322 ~S~NY~l---------~eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~~~~--~~p~~~~~~  390 (652)
T COG1166         322 CSKNYGL---------NEYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVERHEYN--DAPLPDAPR  390 (652)
T ss_pred             CCCCCCH---------HHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEECCCCCCCCC--CCCCCCCCC
T ss_conf             2336788---------99998999999999984599998078104423220422898630002457877--788888843


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             888867189989999999864489898999999999999977566
Q gi|254781051|r  493 MYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEY  537 (957)
Q Consensus       493 mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~  537 (957)
                           ..||-++.+|    .--+-+++..+.++..+-...++.+.
T Consensus       391 -----~~~~l~~~~~----e~~~~i~~r~~~E~~hds~~~~~~~~  426 (652)
T COG1166         391 -----NLPPLWRTLQ----ELYESITARNLREWYHDSQDDLEDAH  426 (652)
T ss_pred             -----CCHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -----2458999999----98634577889999987676799999


No 262
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655   Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=25.48  E-value=19  Score=15.60  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=17.0

Q ss_pred             CCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             110134320221138653111000024424541022565542025762
Q gi|254781051|r  674 EQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKW  721 (957)
Q Consensus       674 E~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW  721 (957)
                      -+||=||=||-|+.                       +|||-||..|-
T Consensus       110 ~AACaGF~Y~Ls~A-----------------------~~~i~SG~y~~  134 (329)
T TIGR00747       110 SAACAGFIYGLSVA-----------------------KQYIESGKYKT  134 (329)
T ss_pred             HHHHHHHHHHHHHH-----------------------HHHHHCCCCCE
T ss_conf             65676689999999-----------------------99861577026


No 263
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=25.37  E-value=33  Score=13.70  Aligned_cols=153  Identities=12%  Similarity=0.153  Sum_probs=73.1

Q ss_pred             CCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHH---HHHH--HHHCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCCCE
Q ss_conf             876564405788752143782697248899999---9999--97435348868985660221080126887893799860
Q gi|254781051|r  739 GPEHSSARLERFLQMCAENNMYVANCTSPANYF---HILR--RQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVF  813 (957)
Q Consensus       739 GPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~F---H~LR--RQ~~r~~rkPLiv~tPKsLLR~~~a~S~l~d~~~g~~F  813 (957)
                      .|+.+..+|+|||-+|...|+.++.+=|-+-..   -.++  -+..+..--|.+..+.+.    +.....|.++..|. -
T Consensus        92 ~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~gy~v~~~S~~~----~~g~~~L~~~l~~k-~  166 (298)
T PRK00098         92 EPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVDDLEEARERLALYRAIGYDVLELSAKE----GPGLDELKPLLAGK-V  166 (298)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC----CCCHHHHHHHHCCC-E
T ss_conf             898998999999999998699589996424564779999999999987899789996899----98999999985798-6


Q ss_pred             EECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHH--HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC-E
Q ss_conf             351577643344454445795457689986885789999--9999769986899984014868289999998537998-3
Q gi|254781051|r  814 QAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLL--DNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-E  890 (957)
Q Consensus       814 ~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~--~~r~~~~~~~vaivRiEqLyPfP~~~l~~~l~~y~~~-e  890 (957)
                      --++. ++..        -+.+-+..++   |..--.--  .+...+|..   ..|--+|||+|-    ..|.-=|.. +
T Consensus       167 sv~~G-~SGV--------GKSSLiN~L~---~~~~~~t~~is~~~~rGrH---TTt~~~l~~l~~----G~iiDTPG~r~  227 (298)
T PRK00098        167 TVLAG-QSGV--------GKSTLLNALV---PELELKTGEISEALGRGKH---TTTHVELYDLPG----GLLIDTPGFSS  227 (298)
T ss_pred             EEEEC-CCCC--------CHHHHHHHHC---CHHHHHHHHHHHHCCCCCE---EEEEEEEEECCC----CEEEECCCCCC
T ss_conf             99987-8988--------7888887607---1444566755665189721---330468998699----75981898775


Q ss_pred             E-EEECCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             9-9806785317845789976999987505
Q gi|254781051|r  891 I-VWCQEEPQNMGAWTFIEPYLEKVLHSIG  919 (957)
Q Consensus       891 ~-vW~QEEp~N~GaW~~v~~rl~~~l~~~~  919 (957)
                      | +|-- ++..   -.+..|-|.......+
T Consensus       228 ~~l~~~-~~~~---l~~~F~e~~~~~~~Ck  253 (298)
T PRK00098        228 FGLEHL-EAED---LEHAFPEFRPLSGECK  253 (298)
T ss_pred             CCCCCC-CHHH---HHHHHHHHHHHHCCCC
T ss_conf             566779-9799---9886788999868898


No 264
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a  Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.35  E-value=40  Score=13.08  Aligned_cols=58  Identities=14%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             9864489898999999999999977566654125876566665686266677899999999887436899
Q gi|254781051|r  510 SLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPK  579 (957)
Q Consensus       510 ~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~T~v~~~~L~~i~~~l~~~Pe  579 (957)
                      -|+++|.++++-+++....+.+.    .+..+.|.|++.        ..-|||+.+.+++++..+.+-..
T Consensus       223 ~ii~~~~~d~~fi~~~t~gf~~~----~~~~~~~tpe~~--------a~itgv~~~~I~~~A~~~a~~~~  280 (512)
T cd02753         223 VIIEEGLYDEEFIEERTEGFEEL----KEIVEKYTPEYA--------ERITGVPAEDIREAARMYATAKS  280 (512)
T ss_pred             EEECCCCCCHHHHHHHCCCHHHH----HHHHHHCCHHHH--------HHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             85006664514577605779999----998650899999--------98859889999999999975698


No 265
>KOG1845 consensus
Probab=25.29  E-value=40  Score=13.09  Aligned_cols=39  Identities=15%  Similarity=-0.004  Sum_probs=16.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHCCCC---CEEEEEEECCCCCHH
Q ss_conf             689986885789999999976998---689998401486828
Q gi|254781051|r  838 RRVILCTGKVYYDLLDNRDMRNIA---DIYLLRIEQLYPFPE  876 (957)
Q Consensus       838 ~rvi~csGKvyydL~~~r~~~~~~---~vaivRiEqLyPfP~  876 (957)
                      +....-+|+-+-+.+++..++.+.   +=-.+++||+-|.-.
T Consensus       661 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~  702 (775)
T KOG1845         661 KLKSEQKQKKTLVELEETRKKWLRSMLNQSLTAGEQLKSLNQ  702 (775)
T ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             555121151799999999999999863333444531010143


No 266
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase; InterPro: IPR012769    Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.; GO: 0008788 alphaalpha-phosphotrehalase activity, 0005993 trehalose catabolic process, 0005737 cytoplasm.
Probab=25.26  E-value=40  Score=13.07  Aligned_cols=35  Identities=11%  Similarity=0.086  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC
Q ss_conf             36789999999999999881704540167777776
Q gi|254781051|r   92 TQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSH  126 (957)
Q Consensus        92 ~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~  126 (957)
                      .+.-.=.-.|..+|+-+|..|=.==+||=++|-..
T Consensus       169 W~Np~VR~~~~~v~~FW~dKGV~GFRlDVINLIsK  203 (555)
T TIGR02403       169 WENPEVREELKDVVNFWRDKGVDGFRLDVINLISK  203 (555)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             77888999999999999866987135427740347


No 267
>pfam02633 Creatininase Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyses the hydrolysis of creatinine to creatine.
Probab=25.24  E-value=40  Score=13.06  Aligned_cols=52  Identities=17%  Similarity=0.397  Sum_probs=42.1

Q ss_pred             HHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf             6403362222564658999999999998737910799806765526899988537
Q gi|254781051|r  230 IKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNK  284 (957)
Q Consensus       230 ~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~K  284 (957)
                      ..|||+=  || ..|+++..|..|++....+|++.|+|==.|-|-.++|..++.+
T Consensus        71 ~~fpGTi--sl-~~~t~~~~l~di~~sl~~~Gf~~ivilNgHgGN~~~l~~~~~~  122 (235)
T pfam02633        71 MGFPGTI--SL-SPETLIALLRDIGRSLARHGFRRLVIVNGHGGNIALLQEAARE  122 (235)
T ss_pred             CCCCCEE--EE-CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             2889736--50-9999999999999999977975899991687748999999999


No 268
>pfam02836 Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities.
Probab=25.22  E-value=40  Score=13.06  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=13.3

Q ss_pred             EEEEEEEECCCCCCCCCHHHHHH
Q ss_conf             04788862575333467258876
Q gi|254781051|r  369 RVLPLIIHGDAAFAGQGIVSETF  391 (957)
Q Consensus       369 ~vlpiliHGDAAfaGQGVV~Etl  391 (957)
                      +.-.+.-|+|-+..|-.+-.|.+
T Consensus        16 ~l~Gvnrh~~~~~~G~a~~~~~~   38 (297)
T pfam02836        16 YFRGVNRHEDHPRRGRAFDEDDM   38 (297)
T ss_pred             EEEEEECCCCCCCCCCCCCHHHH
T ss_conf             87514757578656631899999


No 269
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=25.18  E-value=35  Score=13.47  Aligned_cols=15  Identities=13%  Similarity=0.138  Sum_probs=7.5

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             267889999999999
Q gi|254781051|r  443 NGDDPEAVIRVVRMA  457 (957)
Q Consensus       443 N~DdpEav~~~~~lA  457 (957)
                      -|--|-..+-|+.||
T Consensus         9 vGaG~vGl~lAl~La   23 (384)
T PRK08849          9 VGGGMVGAATAIGFA   23 (384)
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             992499999999999


No 270
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=24.97  E-value=37  Score=13.35  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf             99999998874368998620567788899899873343564211478988898863583157850100223332
Q gi|254781051|r  564 KEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFS  637 (957)
Q Consensus       564 ~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTFs  637 (957)
                      .+.|+++|.++.+.++++.+++. .++-...  .+.+  -=|-=+|=++|.+.|+.++- |++-+-+|-+=||-
T Consensus       348 a~eL~klG~~v~e~~Dgl~I~g~-~~l~g~~--~v~s--~~DHRiaMa~aia~l~~~~~-v~I~~~~~v~kSfP  415 (428)
T COG0128         348 ATELRKLGVEVEETEDGLIITGG-TKLKGAG--TVDS--YGDHRIAMAFAVAGLLSEGG-VRIDDAECVAKSFP  415 (428)
T ss_pred             HHHHHHCCCEEEECCCEEEEECC-CCCCCCC--CCCC--CCCHHHHHHHHHHHHHCCCC-EEECCCCCEECCCC
T ss_conf             99999658677864883899789-8789985--1047--68689999999999605897-89727461034584


No 271
>pfam12565 DUF3747 Protein of unknown function (DUF3747). This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=24.84  E-value=32  Score=13.80  Aligned_cols=14  Identities=36%  Similarity=0.807  Sum_probs=7.0

Q ss_pred             HCCCEEEEECCCCC
Q ss_conf             35831578501002
Q gi|254781051|r  619 YEGYKVRLSGQDCE  632 (957)
Q Consensus       619 ~eG~~VRlsGQD~~  632 (957)
                      +.||++|+.|||-+
T Consensus        96 SNGYSlR~~G~Dlg  109 (183)
T pfam12565        96 SNGYSLRIGGEDLG  109 (183)
T ss_pred             CCCCEEEECCEECC
T ss_conf             88747877880257


No 272
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR; InterPro: IPR010242   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry describes IscR, an iron-sulphur binding transcription factor of the ISC iron-sulphur cluster assembly system.; GO: 0003690 double-stranded DNA binding, 0003700 transcription factor activity, 0006355 regulation of transcription DNA-dependent.
Probab=24.84  E-value=41  Score=13.02  Aligned_cols=17  Identities=18%  Similarity=0.503  Sum_probs=11.1

Q ss_pred             CCCHHHHHHHHHHHHHC
Q ss_conf             78968999999998738
Q gi|254781051|r   17 GTNCCYIEDLYKSYQED   33 (957)
Q Consensus        17 g~Na~YIEeLYekYL~D   33 (957)
                      +-+++|+|||+.|=+++
T Consensus        36 ~ISLSYLEQLFaKLRk~   52 (140)
T TIGR02010        36 NISLSYLEQLFAKLRKA   52 (140)
T ss_pred             CCCHHHHHHHHHHHCHH
T ss_conf             61356798998863210


No 273
>TIGR03159 cas_Csc1 CRISPR-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Probab=24.75  E-value=41  Score=13.00  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             421147898889886358315785010022333
Q gi|254781051|r  604 IDWSMAESLAFGSLCYEGYKVRLSGQDCERGTF  636 (957)
Q Consensus       604 iDW~~AE~LA~~SLl~eG~~VRlsGQD~~RGTF  636 (957)
                      .+||..    ||.=+..|..||+.|++.+|=|.
T Consensus        25 ~N~AL~----YAlg~~~~~y~~~~~~~~q~P~Y   53 (223)
T TIGR03159        25 GNTALD----YALGYILGEYVDLHGQATQRPTY   53 (223)
T ss_pred             HHHHHH----HHHHCCCCCEEECCCCCCCCCCH
T ss_conf             677999----98714577502012432579757


No 274
>PHA00098 hypothetical protein
Probab=24.69  E-value=32  Score=13.80  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             CCCCCC-CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             256564-35422355788888671899899999998644898
Q gi|254781051|r  477 RFGHNE-GDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVI  517 (957)
Q Consensus       477 r~GHNE-~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~i  517 (957)
                      |+|--| +|-|..-||+|-+         --|+++|++.|.+
T Consensus        38 ~~~lG~~~dvp~~~qpLrId---------~~YA~rL~~t~Af   70 (112)
T PHA00098         38 QYGLGLNTDIPFNKQPLRIE---------PTYAKRLIETRAF   70 (112)
T ss_pred             HHCCCCCCCCCCCCCCEEEC---------HHHHHHHHHHCCC
T ss_conf             50445678767677744756---------8899998871276


No 275
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=24.68  E-value=41  Score=12.99  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=28.0

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEC-CCHHHHHHHHHHH
Q ss_conf             88888887656440578875214378269724-8899999999997
Q gi|254781051|r  733 HGYEGQGPEHSSARLERFLQMCAENNMYVANC-TSPANYFHILRRQ  777 (957)
Q Consensus       733 HGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~-ttpAq~FH~LRRQ  777 (957)
                      .|=||.||.     +=+-|+----.||.|+++ |+|-||.+.+|+-
T Consensus        13 ~gDDG~G~~-----v~e~L~~~~~~~~~vidgGt~pe~~~~~i~~~   53 (156)
T PRK11544         13 MGDDGAGPL-----LAEKCAAAPKGGWVVIDGGSAPENDIVAIREL   53 (156)
T ss_pred             CCCCCHHHH-----HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC
T ss_conf             055747599-----99999737899849997988869999998701


No 276
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=24.65  E-value=6.8  Score=18.89  Aligned_cols=37  Identities=14%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             CCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             246778400112203405874267889999999999999
Q gi|254781051|r  422 ARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF  460 (957)
Q Consensus       422 ~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~y  460 (957)
                      |..|.+++-+|.+++.|.+..+ |++.|. .+.+|.+-|
T Consensus        89 s~~S~~a~~va~~LgipsI~f~-Dteha~-~~~~Lt~Pf  125 (335)
T pfam04007        89 MKNSMELPRVAFGLRIPSIIVL-DNEHAL-AANKLTFPL  125 (335)
T ss_pred             ECCCHHHHHHHHHCCCCEEEEE-CCHHHC-CCCEEEEEC
T ss_conf             4488019999988299879994-775541-233023123


No 277
>TIGR02169 SMC_prok_A chromosome segregation protein SMC; InterPro: IPR011891   The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis.     SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases .    All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences.   SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression .    This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by IPR011890 from INTERPRO. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent ..
Probab=24.59  E-value=20  Score=15.34  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=20.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEEEEE---------ECCCCHHHHHHHHHHHCC
Q ss_conf             787777899999999984064302777---------248998999999998414
Q gi|254781051|r  155 LGLESATIPEIVDVLSHLYCSNIGVEF---------MHIVDSIERDWVRNTIED  199 (957)
Q Consensus       155 ~g~~~~tL~eIi~~L~~tYCgsIGvEy---------mHI~d~eer~Wlq~riE~  199 (957)
                      +++..++|.||-+.|-+.=--.=||=+         .-+ ++-||+=|.++|=+
T Consensus       135 lNG~~~~l~ei~d~L~~~gI~p~gYNvVlQGDvt~~I~M-s~~ERRkiIdeiAG  187 (1202)
T TIGR02169       135 LNGKSVRLSEIHDFLAAAGIYPEGYNVVLQGDVTKIISM-SAVERRKIIDEIAG  187 (1202)
T ss_pred             ECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHCCC-CHHHHHHHHHHHCC
T ss_conf             708203576689999861768898706743541231038-84356788888548


No 278
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810    An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,.  10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate     Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=24.46  E-value=41  Score=12.96  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEE-CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf             78999999999840643027772-489989999999984145778887988999999999999989999-9864
Q gi|254781051|r  160 ATIPEIVDVLSHLYCSNIGVEFM-HIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKF-IDIK  231 (957)
Q Consensus       160 ~tL~eIi~~L~~tYCgsIGvEym-HI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~F-L~~K  231 (957)
                      ...-=+.|.|=+.|.|..-+|-. =|+|-+.=+=+-++|.-+-...+-+++.|  ....=-.+|.+++| |..+
T Consensus       101 Ke~HCL~DLL~r~~~GeL~~ei~~VIsNH~~lr~lve~F~iPF~~~p~~~~~r--~e~Ek~~Lell~~yelkh~  172 (294)
T TIGR00655       101 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRELVERFGIPFHYIPATKDTR--LEHEKKELELLKQYELKHK  172 (294)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCHH--HHHHHHHHHHHHCCCCCEE
T ss_conf             41203589999873898237999986498789988665389889863788505--6899999998740332110


No 279
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=24.44  E-value=28  Score=14.28  Aligned_cols=46  Identities=30%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             CCCCHHHHHH-HHHHH-HHHCCC--CCCCC------HHHHHHHHHHHHHCCC-EEEEEC
Q ss_conf             6205677888-99899-873343--56421------1478988898863583-157850
Q gi|254781051|r  581 FNTHKIVERL-MANRQ-KMIETG--KGIDW------SMAESLAFGSLCYEGY-KVRLSG  628 (957)
Q Consensus       581 f~~h~~v~k~-~~~R~-~~~~~~--~~iDW------~~AE~LA~~SLl~eG~-~VRlsG  628 (957)
                      ..+||-+.+. +..|. +++...  .++||      .+.|.+.|  =+..|| +|+||-
T Consensus       537 IAvhPe~q~~GiGsrlL~~l~~~a~~~~DwlgvsFG~t~~L~rF--W~rnGF~pVhls~  593 (758)
T COG1444         537 IAVHPELQRMGIGSRLLALLIEEARKGLDWLGVSFGYTEELLRF--WLRNGFVPVHLSP  593 (758)
T ss_pred             EEECHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHCCEEEEEECC
T ss_conf             87088786358889999999999845898897456788899999--9975907987368


No 280
>KOG2582 consensus
Probab=24.35  E-value=42  Score=12.95  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             46725887645106774436579998416020124701024677840011220340587426788999999999999999
Q gi|254781051|r  383 GQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRM  462 (957)
Q Consensus       383 GQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~  462 (957)
                      .|-|-.+.+||=+      -|+||.++|--|=||++|.+--|..             .|-|  ...-|..-.+.    -.
T Consensus       332 ~qevek~Ilqmie------~~~i~a~iNG~v~f~~n~e~~~Spe-------------M~~n--k~~~~~~L~e~----l~  386 (422)
T KOG2582         332 AQEVEKYILQMIE------DGEIFASINGMVFFTDNPEKYNSPE-------------MHEN--KIDLCIQLIEA----LK  386 (422)
T ss_pred             HHHHHHHHHHHHC------CCCEEEEECCEEEEECCCCCCCCHH-------------HHHH--HHHHHHHHHHH----HH
T ss_conf             6899999999851------6734898624489823835479988-------------8764--77899999999----98


Q ss_pred             HHCCCEEEEEEECCCCCCCCCCC
Q ss_conf             73897399864211256564354
Q gi|254781051|r  463 KFHKSVVIDIVCYRRFGHNEGDE  485 (957)
Q Consensus       463 ~F~kDVvIDlv~YRr~GHNE~De  485 (957)
                      .|...+-.+=+-||+-+---.|+
T Consensus       387 ~~e~si~l~s~~~~K~m~~~~d~  409 (422)
T KOG2582         387 AMEESIRLNSVYVSKSMGSQEDD  409 (422)
T ss_pred             HCCHHEEECCEEEEHHHHHHHCC
T ss_conf             40011550756662655520011


No 281
>PRK12713 flgJ peptidoglycan hydrolase; Provisional
Probab=24.27  E-value=31  Score=13.91  Aligned_cols=30  Identities=7%  Similarity=0.160  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             623889998347636789689999999987
Q gi|254781051|r    2 LQDLNKMFSLSSFLDGTNCCYIEDLYKSYQ   31 (957)
Q Consensus         2 ~~~~~~~f~~sSFL~g~Na~YIEeLYekYL   31 (957)
                      +|+|-+....++.|++....+.++||++=+
T Consensus        55 lKsMR~a~~~~~l~~s~~~~~y~~m~DqQl   84 (339)
T PRK12713         55 LKRMREATPKEGLFDSQQTEMLQGMADEQL   84 (339)
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             999984677788888717789999999999


No 282
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.24  E-value=42  Score=12.93  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf             578777789999999998406430277724899899999
Q gi|254781051|r  154 VLGLESATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDW  192 (957)
Q Consensus       154 ~~g~~~~tL~eIi~~L~~tYCgsIGvEymHI~d~eer~W  192 (957)
                      -+|..-.++|+.++.|+++|-=   .-|.-..+.+.-.|
T Consensus        98 elg~~l~~ire~l~kLee~~g~---~~~~~~d~~ei~e~  133 (274)
T COG3769          98 ELGKVLEKIREKLDKLEEHFGF---TTFDDVDDEEIAEW  133 (274)
T ss_pred             EHHHHHHHHHHHHHHHHHHHCE---EEECCCCHHHHHHH
T ss_conf             3011199999999988887295---67346778999987


No 283
>pfam02676 TYW3 Methyltransferase TYW3. The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3' position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner.
Probab=24.15  E-value=42  Score=12.92  Aligned_cols=72  Identities=26%  Similarity=0.212  Sum_probs=41.4

Q ss_pred             HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEE------EEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
Q ss_conf             11220340587426788999999999999999738973998------642112565643542235578888867189989
Q gi|254781051|r  431 ISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVID------IVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVL  504 (957)
Q Consensus       431 iAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvID------lv~YRr~GHNE~DeP~fTQP~mY~~I~~hp~v~  504 (957)
                      |--.++.||+||-+-|.|+.....++|.+  .-|+.-=++-      +|+-|  +..-+|-|-..+-        +.-|.
T Consensus        90 i~~k~ep~IlHV~cr~le~A~~Ll~~A~~--~GFk~SGi~s~~~~~~iV~Ir--s~~~le~Pl~~~g--------~~lV~  157 (191)
T pfam02676        90 IWLKFEPPILHVQCRDLEDAQKLLSAARS--SGFRESGIKSLSGKRVIVEIR--STERLDVPIGYDG--------KLLVD  157 (191)
T ss_pred             EEEEECCCEEEEEECCHHHHHHHHHHHHH--CCCCHHCCEECCCCCEEEEEE--CCCCEEEEEECCC--------CCCCC
T ss_conf             89992098989995889999999999997--383121737516895699993--4674666760399--------47469


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999998644
Q gi|254781051|r  505 QLYADSLMKN  514 (957)
Q Consensus       505 ~~Y~~~Li~~  514 (957)
                      +-|.+.|++.
T Consensus       158 ~eyl~~lv~~  167 (191)
T pfam02676       158 EEYLKFLVEI  167 (191)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 284
>cd01020 TroA_b Metal binding protein TroA_b.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.74  E-value=43  Score=12.87  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=66.6

Q ss_pred             CCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC-CCHHHHH
Q ss_conf             470102467784001122034058742678899999999999999973897399864211256564354223-5578888
Q gi|254781051|r  417 TNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSF-TQPMMYK  495 (957)
Q Consensus       417 T~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~GHNE~DeP~f-TQP~mY~  495 (957)
                      ++|++-.  +=++|++|+-+|=+|=.||-+-|.  +..+++-     -.+..++..++.--+++.++|+|.+ +-|....
T Consensus        35 ~dPH~ye--p~p~d~~~l~~Adlvv~nG~~lE~--wl~k~~~-----~~~~~~~~~~~~~~~~~~~~~dPHiWldp~~~~  105 (264)
T cd01020          35 VDPHDFE--PTPTDAAKVSTADIVVYNGGGYDP--WMTKLLA-----DTKDVIVIAADLDGHDDKEGDNPHLWYDPETMS  105 (264)
T ss_pred             CCCCCCC--CCHHHHHHHHCCCEEEECCCCCHH--HHHHHHH-----CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             8965687--999999999629899995888168--9999985-----289966883366666677999989377999999


Q ss_pred             HHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             86718998999999986448989899999999999997756
Q gi|254781051|r  496 TIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAE  536 (957)
Q Consensus       496 ~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~  536 (957)
                      .+.+      .-++.|.+.---.++.+++-.+.|.+.|++-
T Consensus       106 ~~a~------~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~L  140 (264)
T cd01020         106 KVAN------ALADALVKADPDNKKYYQANAKKFVASLKPL  140 (264)
T ss_pred             HHHH------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999------9999999869021799999999999999999


No 285
>KOG0674 consensus
Probab=23.66  E-value=20  Score=15.43  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             0002442454102256554202576233368135436888
Q gi|254781051|r  696 EAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGY  735 (957)
Q Consensus       696 EAQFGDF~NgAQviiDqfiss~e~KW~~~sglvllLPHGy  735 (957)
                      -|-|-+|+|-++..+=||-.+-|+||..--|-|-|+|---
T Consensus        79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~  118 (406)
T KOG0674          79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADL  118 (406)
T ss_pred             ECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf             2016654456855899998335401467750588631545


No 286
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=23.64  E-value=43  Score=12.85  Aligned_cols=26  Identities=15%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             99999999987379107998067655
Q gi|254781051|r  248 PAIEEIIRQGVQQGVDEMILGMAHRG  273 (957)
Q Consensus       248 P~L~~ii~~a~~~Gv~eiviGMaHRG  273 (957)
                      |+++.+|+...+.|+++|+|---|++
T Consensus        31 pii~~~i~~l~~~gi~~iii~~~y~~   56 (221)
T cd06422          31 PLIDHALDRLAAAGIRRIVVNTHHLA   56 (221)
T ss_pred             EHHHHHHHHHHHCCCCEEEEECCCCH
T ss_conf             99999999999829967998325327


No 287
>PRK12712 flgJ peptidoglycan hydrolase; Provisional
Probab=23.64  E-value=33  Score=13.71  Aligned_cols=32  Identities=6%  Similarity=0.135  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             96238899983476367896899999999873
Q gi|254781051|r    1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQE   32 (957)
Q Consensus         1 M~~~~~~~f~~sSFL~g~Na~YIEeLYekYL~   32 (957)
                      |+|+|-+...+++.|++....+..+||++=+.
T Consensus        54 mlKsMR~a~~~~~~~~s~~~~~y~~m~DqQla   85 (344)
T PRK12712         54 VLKSMRDATPQDGLFDNEQSKLYMSMMDQQLA   85 (344)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999846777888787167899999999999


No 288
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine  kinases. The Serine Threonine  kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain  is predicted to be involved in ATP binding.
Probab=23.52  E-value=43  Score=12.83  Aligned_cols=50  Identities=10%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             989999986403362222564658999999999998737910799806765526
Q gi|254781051|r  222 EGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRL  275 (957)
Q Consensus       222 e~FE~FL~~Kf~g~KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRL  275 (957)
                      +-|.+++..|=+..+-.-+||.+    .=+.|++...+++|+.+|||.+=||.+
T Consensus        68 ~~~~~~C~~~~V~~e~~v~e~~d----~~~~I~e~v~~~~i~~LVmGs~~~~~~  117 (146)
T cd01989          68 LPYRCFCSRKGVQCEDVVLEDDD----VAKAIVEYVADHGITKLVMGASSDNHF  117 (146)
T ss_pred             HHHHHHHHHCCCEEEEEEEECCC----HHHHHHHHHHHCCCCEEEECCCCCCCE
T ss_conf             99999998759728999983488----889999999975998999862799851


No 289
>TIGR00908 2A0305 ethanolamine permease; InterPro: IPR004757 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment..
Probab=23.49  E-value=23  Score=14.87  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=16.4

Q ss_pred             HHHHHHHH--HCCCCCCCEEEECCCHHH
Q ss_conf             99999997--435348868985660221
Q gi|254781051|r  770 YFHILRRQ--IYDRSSRPLIMMAPKSLL  795 (957)
Q Consensus       770 ~FH~LRRQ--~~r~~rkPLiv~tPKsLL  795 (957)
                      +|.|=|||  |.||||-|+-+++|--=|
T Consensus       381 ~f~LR~~~P~meRPyr~p~~i~~p~~AL  408 (456)
T TIGR00908       381 FFKLRKKRPKMERPYRVPLYILLPAVAL  408 (456)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9997124888778842763356799999


No 290
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.38  E-value=43  Score=12.82  Aligned_cols=86  Identities=26%  Similarity=0.337  Sum_probs=53.0

Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEE-CCCEECCCCCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHH
Q ss_conf             862575333467258876451067744365799984-1602012470102467784001122034058742678899999
Q gi|254781051|r  374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLII-NNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIR  452 (957)
Q Consensus       374 liHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVv-NNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~  452 (957)
                      -+|||- +.|+-++.+.+.  .|..-..-|||=+|= =|.+||...   +|.+.=-+|+-+++--   --+|..      
T Consensus        28 gvHGdE-~~G~~~~~~L~~--~l~~~~l~G~iiivP~~N~~a~~~~---~r~~~dg~nlNR~FPG---~~~Gs~------   92 (287)
T cd06251          28 AIHGDE-LNGVEIIRRLLR--QLDPKTLRGTVIAVPVVNVFGFLNQ---SRYLPDRRDLNRSFPG---SKNGSL------   92 (287)
T ss_pred             CCCCCH-HHHHHHHHHHHH--HCCCCCCCEEEEEEECCCHHHHHHC---CCCCCCCCCHHHCCCC---CCCCCH------
T ss_conf             767541-679999999997--3880017547999924899999726---5458998755200799---999999------


Q ss_pred             HHHHHHHHHHH-HC-CCEEEEEEE
Q ss_conf             99999999997-38-973998642
Q gi|254781051|r  453 VVRMAVSFRMK-FH-KSVVIDIVC  474 (957)
Q Consensus       453 ~~~lA~~yR~~-F~-kDVvIDlv~  474 (957)
                      .-++|...-++ +. .|++|||=|
T Consensus        93 teriA~~l~~~l~~~aD~~iDLHs  116 (287)
T cd06251          93 ASRIAHLFFTEILSHADYGIDLHT  116 (287)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEECC
T ss_conf             999999999998854779999426


No 291
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase; InterPro: IPR012752    This entry represents the WecD protein (formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetyltransferases..
Probab=23.24  E-value=35  Score=13.47  Aligned_cols=37  Identities=22%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             CCCCCCCCCCCEEEEEECCCC-CEEEEHHHCCCCCCEE
Q ss_conf             100223332302799977888-4455634427898459
Q gi|254781051|r  629 QDCERGTFSHRHAILCDQETG-KRYFPLGNISKDQGHC  665 (957)
Q Consensus       629 QD~~RGTFshRHavl~dq~t~-~~y~pL~~l~~~q~~f  665 (957)
                      |..-+|||-|-=.++.|-... .-|+-|..|.+.-++.
T Consensus        99 EnAV~GTFDHqCL~~~da~g~p~G~VtLR~L~d~dARI  136 (201)
T TIGR02382        99 ENAVLGTFDHQCLLLRDAAGDPRGYVTLRELDDSDARI  136 (201)
T ss_pred             HHHCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCCCE
T ss_conf             86505676401352224477940468740047876533


No 292
>pfam08754 consensus
Probab=23.17  E-value=44  Score=12.79  Aligned_cols=37  Identities=24%  Similarity=0.478  Sum_probs=24.5

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHCC-CEEEEEEEC
Q ss_conf             5874267889999999999999997389-739986421
Q gi|254781051|r  439 IFHVNGDDPEAVIRVVRMAVSFRMKFHK-SVVIDIVCY  475 (957)
Q Consensus       439 I~HVN~DdpEav~~~~~lA~~yR~~F~k-DVvIDlv~Y  475 (957)
                      ||||+.|||+-.-.+..-+--+-+-+.. ++=|-+|++
T Consensus         3 v~hvd~~d~~~~~~~L~n~~N~~~~~~~~~~~I~vV~~   40 (113)
T pfam08754         3 VFHIDSNDPEKVNLVLSNINNLLNAYGEENLEIEVVAH   40 (113)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             99936888899999999999999746887548999980


No 293
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=23.13  E-value=25  Score=14.56  Aligned_cols=49  Identities=20%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHCCCHHHCCCCCCCCCCC-CCCCCCCHHHCCCCHHHCCCEEE
Q ss_conf             9999999998817045401677777766-78776787666999788171572
Q gi|254781051|r  100 QVMKMIDAYRSYGHFKANIDPLGYNSHQ-KDLSELSPAHYGFVKADYDRKIC  150 (957)
Q Consensus       100 rV~~LI~AYR~~GHl~A~lDPLgl~~~~-~~~peL~~~~yGLse~DLd~~f~  150 (957)
                      ...+|+.|.+.|||...-+||+...-.. ...+.+  .+.|..-.|+|..++
T Consensus        14 st~RL~eaa~~rGh~v~vidp~~~~~~i~~~~~~v--~~~g~~L~~~Davip   63 (300)
T PRK10446         14 SCKRLREAAIQRGHLVEILDPLSCYMNINPAASSI--HYKGRKLPHFDAVIP   63 (300)
T ss_pred             HHHHHHHHHHHCCCEEEEEEHHHCEEEECCCCCEE--EECCEECCCCCEEEE
T ss_conf             79999999998799599961489189824898649--989808687888998


No 294
>PRK13463 phosphatase PhoE; Provisional
Probab=23.13  E-value=44  Score=12.78  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHH---HHHCCCCEEEEECCCCCHHHHHH-HHHCCCHHHHHHHHCCCC
Q ss_conf             98999998640336222256465899999999999---87379107998067655268999-885379899999855887
Q gi|254781051|r  222 EGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQ---GVQQGVDEMILGMAHRGRLNVLS-QIMNKLPRSIFYEFKGKG  297 (957)
Q Consensus       222 e~FE~FL~~Kf~g~KRFsLEG~EslIP~L~~ii~~---a~~~Gv~eiviGMaHRGRLNVL~-Nvl~Kp~~~iF~EF~g~~  297 (957)
                      +.+..|...    ...|...||||+.-+.+.+.+.   ..+..-.+-|+=.+|-|=+.+|. .++|.|++.++....   
T Consensus       103 ~~~~~~~~~----~~~~~~~~GEs~~~~~~Rv~~~l~~i~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~---  175 (203)
T PRK13463        103 DDIQLFWNE----PHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAAAKLLVGHFAGIEIENVWDDPF---  175 (203)
T ss_pred             HHHHHHHHC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHCCCC---
T ss_conf             999998629----1226899998999999999999999998889891999939799999999981989789725688---


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCH
Q ss_conf             432234555100150268898359618999717877310
Q gi|254781051|r  298 PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLE  336 (957)
Q Consensus       298 ~~~~~~sGDVKYHLG~s~~~~~~g~~v~lsL~~NPSHLE  336 (957)
                       .          +-+.-+.+.++++.-.|...++-||||
T Consensus       176 -~----------~n~sisvi~~~~g~~~l~~~nd~sHL~  203 (203)
T PRK13463        176 -M----------HSASLSIIEFEDGKGEVKQFADISHFQ  203 (203)
T ss_pred             -C----------CCCEEEEEEEECCEEEEEEECCCCCCC
T ss_conf             -7----------676799999989969999981313259


No 295
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI; InterPro: IPR014115   This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm , ..
Probab=23.08  E-value=44  Score=12.77  Aligned_cols=41  Identities=29%  Similarity=0.425  Sum_probs=35.5

Q ss_pred             HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             189989999999864489898999999999999977566654
Q gi|254781051|r  499 SHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKES  540 (957)
Q Consensus       499 ~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~  540 (957)
                      ..+.+.+-|.+.|.+.. +|+++.++..+.|...|++.++.-
T Consensus        38 dmK~tldaf~~~l~~~~-l~E~~~k~~~~rF~~~L~~~L~~~   78 (112)
T TIGR02744        38 DMKSTLDAFFDSLSQKK-LSEAQQKKLLKRFNALLEAELQAW   78 (112)
T ss_pred             CCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             10357408999998720-378999888999988779999999


No 296
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.04  E-value=44  Score=12.77  Aligned_cols=54  Identities=9%  Similarity=0.126  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHC----CCCEECCCC---HHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99999999989999986403----362222564---6589999999999987379107998
Q gi|254781051|r  214 ILDKLVRAEGFEKFIDIKYK----GAKRFGADG---SEVIIPAIEEIIRQGVQQGVDEMIL  267 (957)
Q Consensus       214 iL~~L~~Ae~FE~FL~~Kf~----g~KRFsLEG---~EslIP~L~~ii~~a~~~Gv~eivi  267 (957)
                      ..+.+.++-.+-+-|..+.+    |.-..+...   -+.++-.|..+.+.+.+.||+=.+-
T Consensus        82 ~~~~~~~ai~~a~~lg~~~i~~~~G~~~~~~~~e~~~~~~~e~l~~~a~~a~~~Gv~l~iE  142 (254)
T TIGR03234        82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIE  142 (254)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             8873899999999968986886756888899989999999999999999999659889886


No 297
>pfam10544 T5orf172 T5orf172 domain. This domain was identified by Iyer and colleagues.
Probab=23.01  E-value=27  Score=14.31  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=17.1

Q ss_pred             CEECCCCCHHCCCCCCCCHHHHHHC-CCEEE--ECCCCHHHHHH
Q ss_conf             0201247010246778400112203-40587--42678899999
Q gi|254781051|r  412 QIGFTTNPSSARSCTYASDISKSIG-IPIFH--VNGDDPEAVIR  452 (957)
Q Consensus       412 QIGFTT~p~d~RSs~Y~TDiAK~i~-aPI~H--VN~DdpEav~~  452 (957)
                      -||+|++|. .|-+.+.+....... .-++.  .|+...|..++
T Consensus         8 KIG~T~n~~-~R~~~l~~~~~~~~~~~~~~~~~~~~~~~E~~lh   50 (79)
T pfam10544         8 KIGYTTNLE-RRLKELNTGSPFPDELVAVIELVDNARKLERLLH   50 (79)
T ss_pred             EEECCCCHH-HHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHH
T ss_conf             897729999-9999863579999758999985299999999999


No 298
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase  (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=22.86  E-value=43  Score=12.80  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             99999999987379107998067655
Q gi|254781051|r  248 PAIEEIIRQGVQQGVDEMILGMAHRG  273 (957)
Q Consensus       248 P~L~~ii~~a~~~Gv~eiviGMaHRG  273 (957)
                      |+++.+|+...+.|+++|+|-..|++
T Consensus        32 pli~~~i~~l~~~gi~~iii~~~y~~   57 (233)
T cd06425          32 PMIEHQIEALAKAGVKEIILAVNYRP   57 (233)
T ss_pred             EHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             69999999999859973210112357


No 299
>PRK09060 dihydroorotase; Validated
Probab=22.61  E-value=27  Score=14.31  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             CHHHHHHHCCCCCEEEEECCCHHHHHHHHHH-HHCCCCCCCEEEECCCH
Q ss_conf             0578875214378269724889999999999-74353488689856602
Q gi|254781051|r  746 RLERFLQMCAENNMYVANCTSPANYFHILRR-QIYDRSSRPLIMMAPKS  793 (957)
Q Consensus       746 RlERfLQl~a~~N~~V~~~ttpAq~FH~LRR-Q~~r~~rkPLiv~tPKs  793 (957)
                      -+||+..++         ++.||+.|-+-++ .+.-.+.==|||+-|+.
T Consensus       345 sl~~~v~~~---------s~nPAki~GL~~kG~i~~G~dADlvi~Dp~~  384 (444)
T PRK09060        345 SLERFVDLT---------SAGPARIFGIAGKGRIAVGYDADFTIVDLKR  384 (444)
T ss_pred             CHHHHHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             299999997---------1749998498988735799966589995999


No 300
>PRK08948 consensus
Probab=22.48  E-value=38  Score=13.27  Aligned_cols=11  Identities=9%  Similarity=0.139  Sum_probs=4.2

Q ss_pred             CHHHHHHHHHH
Q ss_conf             99999999887
Q gi|254781051|r  563 SKEILKKIGSS  573 (957)
Q Consensus       563 ~~~~L~~i~~~  573 (957)
                      +...++.+|-.
T Consensus       360 ~~~~~R~~gl~  370 (392)
T PRK08948        360 PLVVGRNLGLM  370 (392)
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999999


No 301
>PRK12753 transketolase; Reviewed
Probab=22.39  E-value=45  Score=12.68  Aligned_cols=184  Identities=14%  Similarity=0.190  Sum_probs=108.5

Q ss_pred             CEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC---C
Q ss_conf             4599982431111013432022113865311100002442454102256554202576233368135436888888---8
Q gi|254781051|r  663 GHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQ---G  739 (957)
Q Consensus       663 ~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiDqfiss~e~KW~~~sglvllLPHGyeGq---G  739 (957)
                      ++|  ++-=-.|.+..++--|.++..  .|.-+=+-|.=|   .|-+.||-.-++-.    ....+..+-|.==|-   |
T Consensus       401 gr~--~~~GI~E~~m~~~a~Gla~~g--gl~P~~~tf~~F---~~~~~~~ir~~a~~----~~~~i~v~Thd~i~vGeDG  469 (662)
T PRK12753        401 GNY--IHYGVREFGMTAIANGIAHHG--GFVPYTATFLMF---VEYARNAARMAALM----KARQIMVYTHDSIGLGEDG  469 (662)
T ss_pred             CCE--EEECHHHHHHHHHHHHHHHCC--CCEEEEEEHHHH---HHHHHHHHHHHHHH----CCCCEEEEECCCCCCCCCC
T ss_conf             762--661257887999998998728--974887659999---99868999999872----5882799953554046887


Q ss_pred             CCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCH-HHCCCCCCCCHHHHCCCCCEEECCC
Q ss_conf             765644057887521437826972488999999999974353488689856602-2108012688789379986035157
Q gi|254781051|r  740 PEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKS-LLRHKRVVSSLSDMTCGSVFQAVLS  818 (957)
Q Consensus       740 PEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tPKs-LLR~~~a~S~l~d~~~g~~F~~vi~  818 (957)
                      |-|-.  +|-.--|.+=.||.|..|.-.-.--++++.-+.+. ..|-.+..+.. +--.+......+++..|.   -|+-
T Consensus       470 pTHQ~--ie~la~lR~iPn~~v~~PaD~~E~~~a~~~a~~~~-~gP~~l~l~R~~~~~~~~~~~~~~~~~~G~---yil~  543 (662)
T PRK12753        470 PTHQP--VEQLASLRLTPNFSTWRPCDQVEAAVAWKLAIERH-NGPTALILSRQNLAQVERTPEQVKNIARGG---YILK  543 (662)
T ss_pred             CCCCH--HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHCCCCEE---EEEE
T ss_conf             65330--78999998555877993188899999999999625-897499985787787688711132156525---9995


Q ss_pred             CCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCC--CEEEEEEECCCCCHH
Q ss_conf             7643344454445795457689986885789999999976998--689998401486828
Q gi|254781051|r  819 DDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLRIEQLYPFPE  876 (957)
Q Consensus       819 d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~--~vaivRiEqLyPfP~  876 (957)
                      |..             .+.+=.|+.||-.-..-+++.++...+  ++.+|-+--+-||-.
T Consensus       544 ~~~-------------~~pdv~iiatGs~v~~Al~Aa~~L~~~gi~~~Vvs~~s~~~~d~  590 (662)
T PRK12753        544 DSG-------------GKPDLILIATGSEVEITLQAAEKLTGEGRNVRVVSMPSTDIFDA  590 (662)
T ss_pred             ECC-------------CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf             059-------------99989999630999999999999996799789997898548773


No 302
>PRK11069 recC exonuclease V subunit gamma; Provisional
Probab=22.39  E-value=41  Score=12.98  Aligned_cols=12  Identities=17%  Similarity=0.407  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             689999999987
Q gi|254781051|r   20 CCYIEDLYKSYQ   31 (957)
Q Consensus        20 a~YIEeLYekYL   31 (957)
                      +.||-+||.+-+
T Consensus        66 ~~fiw~l~~~vl   77 (1122)
T PRK11069         66 ATFIWDMFTRVL   77 (1122)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999864


No 303
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=22.33  E-value=45  Score=12.67  Aligned_cols=62  Identities=21%  Similarity=0.332  Sum_probs=40.8

Q ss_pred             CCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCC--CCEEECC
Q ss_conf             58315785010022333230279997788844556344278984599982431111013432022113865--3111000
Q gi|254781051|r  620 EGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLN--ALTIWEA  697 (957)
Q Consensus       620 eG~~VRlsGQD~~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~--~L~iWEA  697 (957)
                      -|-.|.++|-..+=|--+-..|+--+...+..|.         +.+++-       +-.-|||=|-+.+++  .-++||.
T Consensus        12 ~Gq~v~vvG~~~~LG~W~~~~ai~L~~~~~~~W~---------~~v~lp-------~~~~~EYKyvi~~~d~~~~v~WE~   75 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWT---------VDVGIP-------ESVYIEYKYFVSNYDDPNTVLWES   75 (100)
T ss_pred             CCCEEEEEECCHHHCCCCHHHCCCCCCCCCCCEE---------EEEEEC-------CCCCEEEEEEEEECCCCCEEEECC
T ss_conf             9988999979388689888887216566899699---------999967-------999699999997348897689676


No 304
>pfam09011 DUF1898 Domain of unknown function (DUF1898). This domain is predominantly found in Maelstrom homolog proteins. It has no known function.
Probab=22.31  E-value=32  Score=13.79  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=9.7

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             8887656440578875214378
Q gi|254781051|r  737 GQGPEHSSARLERFLQMCAENN  758 (957)
Q Consensus       737 GqGPEHSSaRlERfLQl~a~~N  758 (957)
                      +++|--|--|.-||+|||+.-|
T Consensus        81 ~~a~v~~~~~~~~~~ql~~~~~  102 (164)
T pfam09011        81 KNAPKFSDFRKPGFFQLNDQRN  102 (164)
T ss_pred             CCCCCCCCCCCCCCEEECCCCC
T ss_conf             6776433322211100136677


No 305
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR; InterPro: IPR010211   SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulphur cluster activates SoxR. The physiological role in Escherichia coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In Escherichia coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0005506 iron ion binding, 0006118 electron transport, 0006355 regulation of transcription DNA-dependent, 0006979 response to oxidative stress.
Probab=22.30  E-value=35  Score=13.53  Aligned_cols=28  Identities=11%  Similarity=0.260  Sum_probs=23.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf             8689998401486828999999853799
Q gi|254781051|r  861 ADIYLLRIEQLYPFPEDYLIKVLSRFVQ  888 (957)
Q Consensus       861 ~~vaivRiEqLyPfP~~~l~~~l~~y~~  888 (957)
                      .-||+||+=|--=.|-++|.+.|+..|.
T Consensus        45 RRVa~Ik~AQ~vGipL~~I~~ALa~LP~   72 (142)
T TIGR01950        45 RRVAVIKVAQRVGIPLAEIAEALAELPE   72 (142)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             1567433233258988899999973468


No 306
>KOG4166 consensus
Probab=22.30  E-value=45  Score=12.67  Aligned_cols=12  Identities=17%  Similarity=0.673  Sum_probs=5.6

Q ss_pred             CCCCHHHHHHHH
Q ss_conf             256465899999
Q gi|254781051|r  239 GADGSEVIIPAI  250 (957)
Q Consensus       239 sLEG~EslIP~L  250 (957)
                      |.-|||-+.-||
T Consensus        90 g~tGg~If~emm  101 (675)
T KOG4166          90 GRTGGDIFVEMM  101 (675)
T ss_pred             CCCHHHHHHHHH
T ss_conf             774268999999


No 307
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides.  These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase.  The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.17  E-value=45  Score=12.65  Aligned_cols=18  Identities=22%  Similarity=0.495  Sum_probs=12.6

Q ss_pred             HHHHHHCCCEEEECCCCH
Q ss_conf             011220340587426788
Q gi|254781051|r  430 DISKSIGIPIFHVNGDDP  447 (957)
Q Consensus       430 DiAK~i~aPI~HVN~Ddp  447 (957)
                      +++.++..|.||+-||..
T Consensus       142 e~~~lf~~~~~HiGgDE~  159 (303)
T cd02742         142 EIAELFPDRYLHIGGDEA  159 (303)
T ss_pred             HHHHHCCCCEEEECCCCC
T ss_conf             999867998599667578


No 308
>pfam09820 AAA-ATPase_like Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.
Probab=22.05  E-value=35  Score=13.47  Aligned_cols=11  Identities=18%  Similarity=0.374  Sum_probs=4.1

Q ss_pred             CCCCEECCCCH
Q ss_conf             33622225646
Q gi|254781051|r  233 KGAKRFGADGS  243 (957)
Q Consensus       233 ~g~KRFsLEG~  243 (957)
                      .|.=||+.+|.
T Consensus       188 TGI~~i~k~si  198 (279)
T pfam09820       188 TGVSKFSKVSI  198 (279)
T ss_pred             EEEEECCCCCC
T ss_conf             41100211344


No 309
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.00  E-value=41  Score=13.01  Aligned_cols=19  Identities=37%  Similarity=0.676  Sum_probs=7.8

Q ss_pred             HHHHHHHCCCCCEEEEEEE
Q ss_conf             9999997699868999840
Q gi|254781051|r  851 LLDNRDMRNIADIYLLRIE  869 (957)
Q Consensus       851 L~~~r~~~~~~~vaivRiE  869 (957)
                      |.+-|+++.+.||..|.|+
T Consensus        64 Lf~D~RA~~VGDilTV~i~   82 (230)
T PRK12700         64 LFEDRRPRNVGDIVTIVLE   82 (230)
T ss_pred             HHCCCCCCCCCCEEEEEEE
T ss_conf             0066644789986999998


No 310
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=21.99  E-value=46  Score=12.62  Aligned_cols=21  Identities=14%  Similarity=0.368  Sum_probs=14.2

Q ss_pred             EEEECCCCHHHHHHHHHHHCC
Q ss_conf             777248998999999998414
Q gi|254781051|r  179 VEFMHIVDSIERDWVRNTIED  199 (957)
Q Consensus       179 vEymHI~d~eer~Wlq~riE~  199 (957)
                      .=|-.=.|+++..|...+...
T Consensus       124 LvF~DgdD~~Qv~Wa~~~~~~  144 (210)
T PRK13738        124 LYFINGDDPAQVAWMKRQTPP  144 (210)
T ss_pred             EEEEECCCHHHHHHHHHHCCC
T ss_conf             899959899999999974005


No 311
>TIGR00821 EII-GUT PTS system, glucitol/sorbitol-specific, IIC component; InterPro: IPR004699 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars.   The Gut family consists only of glucitol-specific transporters, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein.   This family is specific for the IIC component.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=21.97  E-value=27  Score=14.41  Aligned_cols=12  Identities=58%  Similarity=1.071  Sum_probs=7.6

Q ss_pred             CHHHHHHHCCCC
Q ss_conf             057887521437
Q gi|254781051|r  746 RLERFLQMCAEN  757 (957)
Q Consensus       746 RlERfLQl~a~~  757 (957)
                      |+|||=|-||.|
T Consensus        52 ~~~rfA~~~~~N   63 (181)
T TIGR00821        52 RIERFAKKCAGN   63 (181)
T ss_pred             HHHHHHHHHCCC
T ss_conf             799998864034


No 312
>pfam11432 DUF3197 Protein of unknown function (DUF3197). This bacterial family of proteins has no known function.
Probab=21.83  E-value=46  Score=12.60  Aligned_cols=51  Identities=14%  Similarity=0.292  Sum_probs=36.3

Q ss_pred             CEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHC
Q ss_conf             22225646589999999999987379107998067655268999885379899999855
Q gi|254781051|r  236 KRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFK  294 (957)
Q Consensus       236 KRFsLEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~  294 (957)
                      -|||.||.++|.-+..-+++++..  ..|.|++-.-      .+-+|.-|+++...-..
T Consensus        52 PafGp~G~~ALaELv~w~~~~G~r--~~E~V~~p~e------f~~ll~~p~~e~~~~l~  102 (113)
T pfam11432        52 PAYGPGGAEALAELVRWALAQGAR--FYETVLSPGD------FTRVLAEPDAEEVKRLI  102 (113)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCC--CEEEECCHHH------HHHHHCCCCHHHHHHHH
T ss_conf             675852789999999999975997--0122138688------89998189589999998


No 313
>TIGR01063 gyrA DNA gyrase, A subunit; InterPro: IPR005743   DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA .   Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils .   Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively.   This entry represents the A subunit (gyrA) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrA has two functional domains: an N-terminal that forms the covalent DNA-protein bridge that is responsible for the breaking- and rejoining function, and a C-terminal that can bind DNA non-specifically .   More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=21.70  E-value=46  Score=12.58  Aligned_cols=106  Identities=14%  Similarity=0.298  Sum_probs=62.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC-----CCCC----CCCCCCCCCHHHCCCCHHHCCCEEECCCCC--
Q ss_conf             55563367899999999999998817045401677-----7777----667877678766699978817157256657--
Q gi|254781051|r   87 CSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPL-----GYNS----HQKDLSELSPAHYGFVKADYDRKICMKGVL--  155 (957)
Q Consensus        87 ~~~~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPL-----gl~~----~~~~~peL~~~~yGLse~DLd~~f~~~~~~--  155 (957)
                      .....+..+.   ++..||++=+.-|  .|++.=-     |+|-    .+-..|+.=+-.. ++..+|+..|.+..+.  
T Consensus       260 YqVNKa~Lie---kIAeLv~ek~ieG--IsdiRDESSDr~GiRiVIE~KRD~~a~VvLN~L-Yk~T~lQ~~Fg~NmLALv  333 (864)
T TIGR01063       260 YQVNKARLIE---KIAELVREKKIEG--ISDIRDESSDREGIRIVIELKRDAVAEVVLNNL-YKQTQLQVSFGINMLALV  333 (864)
T ss_pred             CCCHHHHHHH---HHHHHHHCCCCCC--CCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHH-HCCCCCCEECCEEEEEEE
T ss_conf             8520268889---9998740000003--212442566877437999974289830154212-112645001481232110


Q ss_pred             -CC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHHHHHH
Q ss_conf             -87-77789999999998406430277724899899999999841457788879---88999999999999
Q gi|254781051|r  156 -GL-ESATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFS---KEEQRDILDKLVRA  221 (957)
Q Consensus       156 -g~-~~~tL~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s---~eeK~~iL~~L~~A  221 (957)
                       |. ..++|+++|..                       |+..|.|-...+..|.   .++|-|||+-|+.|
T Consensus       334 ~G~Pk~lnLk~~l~~-----------------------f~~HR~~Vi~RRT~feLrKA~eRaHiL~GL~~A  381 (864)
T TIGR01063       334 DGLPKVLNLKELLEA-----------------------FVEHRKDVITRRTIFELRKAEERAHILEGLLIA  381 (864)
T ss_pred             CCCCCEECHHHHHHH-----------------------HHHCCEEEEEEEHHCCHHHHHHHHHHHHHHHHH
T ss_conf             789750178899999-----------------------984231335521000102265578999999999


No 314
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=21.68  E-value=46  Score=12.58  Aligned_cols=25  Identities=20%  Similarity=0.482  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             9999999998737910799806765
Q gi|254781051|r  248 PAIEEIIRQGVQQGVDEMILGMAHR  272 (957)
Q Consensus       248 P~L~~ii~~a~~~Gv~eiviGMaHR  272 (957)
                      |+++.+++.+.+.||++|+|=-.++
T Consensus        40 Pii~~~vee~~~aGI~ei~iV~~~~   64 (302)
T PRK13389         40 PLIQYVVNECIAAGITEIVLVTHSS   64 (302)
T ss_pred             EHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             7599999999986997899992798


No 315
>pfam11810 DUF3332 Domain of unknown function (DUF3332). This family of proteins are functionally uncharacterized. This family is only found in bacteria.
Probab=21.64  E-value=41  Score=13.03  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=13.2

Q ss_pred             CCCCCCCEEEEEECCCEECCC--CCHHCCCCCC
Q ss_conf             774436579998416020124--7010246778
Q gi|254781051|r  397 SGYTVAGNIHLIINNQIGFTT--NPSSARSCTY  427 (957)
Q Consensus       397 ~gY~tGGTiHiVvNNQIGFTT--~p~d~RSs~Y  427 (957)
                      |-|.+.+..-++|=|-|-|=|  ||--...+.+
T Consensus        53 pvYgi~~~~D~~v~NsiEFWtG~Npi~~~pav~   85 (175)
T pfam11810        53 PVYGIAALADLLVFNSIEFWSGSNPITGKPAVA   85 (175)
T ss_pred             HHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCC
T ss_conf             387786551236770068654888778997534


No 316
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=21.59  E-value=47  Score=12.57  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEE-ECCCEECCCCCHHCCCCC-CCCHHHHHHCCCEEEECCCCHH
Q ss_conf             78886257533346725887645106774436579998-416020124701024677-8400112203405874267889
Q gi|254781051|r  371 LPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLI-INNQIGFTTNPSSARSCT-YASDISKSIGIPIFHVNGDDPE  448 (957)
Q Consensus       371 lpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiV-vNNQIGFTT~p~d~RSs~-Y~TDiAK~i~aPI~HVN~DdpE  448 (957)
                      +-=-||||- +.|+-|+++.+.  .|..-..-|||=|| +=|-.||-...   |.++ --+|+-+++-       | |++
T Consensus        39 i~agvHGdE-~~G~~v~~~L~~--~l~~~~l~G~viivP~~N~~g~~~~~---R~~P~dg~nlNR~FP-------G-~~~  104 (316)
T cd06252          39 LTGGNHGDE-YEGQIALLRLAR--RLDPEEVRGRVIILPALNFPAVQAGT---RTSPIDGGNLNRVFP-------G-DPD  104 (316)
T ss_pred             EECCCCCCH-HHHHHHHHHHHH--HCCHHHCEEEEEEEECCCHHHHHHCC---CCCCCCCCCCCCCCC-------C-CCC
T ss_conf             971655532-779999999987--48854682889999148989994122---247889986122489-------9-989


Q ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEEEEC
Q ss_conf             9999999999999973--89739986421
Q gi|254781051|r  449 AVIRVVRMAVSFRMKF--HKSVVIDIVCY  475 (957)
Q Consensus       449 av~~~~~lA~~yR~~F--~kDVvIDlv~Y  475 (957)
                      . ...-++|..+.+++  +.|++|||=|-
T Consensus       105 G-s~teriA~~l~~~l~~~aD~~iDLHsg  132 (316)
T cd06252         105 G-TVTEMIAHYLTTELLPRADYVIDLHSG  132 (316)
T ss_pred             C-CHHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             9-989999999998557529899990568


No 317
>pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.
Probab=21.58  E-value=33  Score=13.69  Aligned_cols=15  Identities=47%  Similarity=1.059  Sum_probs=7.1

Q ss_pred             EEEEEEECCCCCCCCCC
Q ss_conf             39986421125656435
Q gi|254781051|r  468 VVIDIVCYRRFGHNEGD  484 (957)
Q Consensus       468 VvIDlv~YRr~GHNE~D  484 (957)
                      ++||=-||  |||+|.|
T Consensus       208 ~liDPA~y--yG~rE~D  222 (287)
T pfam03881       208 VIFDPACY--YGDRECD  222 (287)
T ss_pred             EEECCHHC--CCCCHHH
T ss_conf             89754311--5770776


No 318
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=21.44  E-value=47  Score=12.54  Aligned_cols=38  Identities=18%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             CHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCC
Q ss_conf             0102467784001122034058742678899999999999999-9738973998642112565
Q gi|254781051|r  419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFR-MKFHKSVVIDIVCYRRFGH  480 (957)
Q Consensus       419 p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR-~~F~kDVvIDlv~YRr~GH  480 (957)
                      ..|+.++-.++|||                        +..|| ++|+-|-+|+++|=+-+||
T Consensus       300 ksDGt~tY~t~DiA------------------------~~~~k~~~~~~d~~I~V~gadh~~~  338 (562)
T PRK12451        300 KSDGATIYATRDLT------------------------AALYRQNTFGFDKALYVVGPEQSLH  338 (562)
T ss_pred             CCCCCCEEECCHHH------------------------HHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf             18997213166478------------------------9999987309975899956747679


No 319
>PRK12709 flgJ peptidoglycan hydrolase; Provisional
Probab=21.38  E-value=40  Score=13.10  Aligned_cols=31  Identities=10%  Similarity=0.179  Sum_probs=14.6

Q ss_pred             CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9623889998347636789689999999987
Q gi|254781051|r    1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQ   31 (957)
Q Consensus         1 M~~~~~~~f~~sSFL~g~Na~YIEeLYekYL   31 (957)
                      |+|+|-+...+++.|++....+.++||++=+
T Consensus        51 mlKsMR~a~~~~~l~~s~~~~~y~~M~DqQl   81 (318)
T PRK12709         51 MLKSMRDATPSDGLFDSHTSKMYTSMLDQQL   81 (318)
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9999984676788878706789999999999


No 320
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=21.37  E-value=45  Score=12.69  Aligned_cols=75  Identities=13%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHCCCCCEEEEECCCHHHHH----HHHHHHHCCCCCC---CEEEECCCHHHCCCCCCCCHHHHCCCCC
Q ss_conf             76564405788752143782697248899999----9999974353488---6898566022108012688789379986
Q gi|254781051|r  740 PEHSSARLERFLQMCAENNMYVANCTSPANYF----HILRRQIYDRSSR---PLIMMAPKSLLRHKRVVSSLSDMTCGSV  812 (957)
Q Consensus       740 PEHSSaRlERfLQl~a~~N~~V~~~ttpAq~F----H~LRRQ~~r~~rk---PLiv~tPKsLLR~~~a~S~l~d~~~g~~  812 (957)
                      |+-|+.+|+|||-+|...++..+.+=|-+-..    -.--++.+..|++   |.+..+-|+    ......|.++..|. 
T Consensus       134 P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~lGY~v~~~Sa~~----~~gl~~L~~~L~~k-  208 (344)
T PRK12288        134 PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNIGYRVLMVSSHT----GEGLEPLEAALTGR-  208 (344)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CCCHHHHHHHHCCC-
T ss_conf             9989789999999999869977999731440897789999999999986797399973688----62899999987678-


Q ss_pred             EEECCCCC
Q ss_conf             03515776
Q gi|254781051|r  813 FQAVLSDD  820 (957)
Q Consensus       813 F~~vi~d~  820 (957)
                       ..|+--+
T Consensus       209 -tsvf~Gq  215 (344)
T PRK12288        209 -ISIFVGQ  215 (344)
T ss_pred             -EEEEEEC
T ss_conf             -5999806


No 321
>pfam04908 SH3BGR SH3-binding, glutamic acid-rich protein.
Probab=21.35  E-value=47  Score=12.53  Aligned_cols=63  Identities=21%  Similarity=0.373  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHCCC-CCCCCCCHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf             9999999840643027772489-989999999984145-77888798899----999999999998999998
Q gi|254781051|r  164 EIVDVLSHLYCSNIGVEFMHIV-DSIERDWVRNTIEDY-DFSSNFSKEEQ----RDILDKLVRAEGFEKFID  229 (957)
Q Consensus       164 eIi~~L~~tYCgsIGvEymHI~-d~eer~Wlq~riE~~-~~~~~~s~eeK----~~iL~~L~~Ae~FE~FL~  229 (957)
                      +|+..|+.   -.|-+|.--|. +.+.|.|.|++.... ...|++=.+++    -.-+...++.+.++.||.
T Consensus        22 ~v~~iL~s---~kI~ye~vDIt~~ee~r~~Mr~~~~~~~~lpPQIFn~d~YcGdye~F~~A~E~~~l~~FLk   90 (92)
T pfam04908        22 RVLMILDA---NKIPFDEVDITKDEEQRRWMRENPPNGAPLPPQIFNEDQYCGDYDAFFEAVEANTLYEFLG   90 (92)
T ss_pred             HHHHHHHH---CCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCEECCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999998---5997389855589899999998469999889907219863157999998851447999858


No 322
>TIGR01719 euk_UDPppase uridine phosphorylase; InterPro: IPR010059   This entry represents a clade of mainly eukaryotic uridine phosphorylases. Genes from human  and mouse  have been characterised. This enzyme is a member of the PHP/UDP subfamily and is closely related to the bacterial uridine (IPR010058 from INTERPRO) and inosine (IPR004402 from INTERPRO) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.; GO: 0004850 uridine phosphorylase activity, 0009166 nucleotide catabolic process, 0005737 cytoplasm.
Probab=21.32  E-value=27  Score=14.41  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=15.1

Q ss_pred             HHHHHH--HHHHHCCCHHHCCCCC
Q ss_conf             999999--9998817045401677
Q gi|254781051|r  100 QVMKMI--DAYRSYGHFKANIDPL  121 (957)
Q Consensus       100 rV~~LI--~AYR~~GHl~A~lDPL  121 (957)
                      -...||  --|=.||-|.|-=||.
T Consensus       102 ~L~ELiKL~~~A~rGDLea~~~p~  125 (301)
T TIGR01719       102 MLHELIKLLYYAKRGDLEACKDPV  125 (301)
T ss_pred             HHHHHHHHHHHHCCCCHHHHCCCE
T ss_conf             999999999983777501206856


No 323
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106   Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi)..
Probab=21.05  E-value=29  Score=14.13  Aligned_cols=23  Identities=13%  Similarity=0.384  Sum_probs=12.8

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             50798999998736764333333
Q gi|254781051|r   35 SSVCKDWYPLFSFLDENSEEYDN   57 (957)
Q Consensus        35 ~SVd~sWr~fF~~l~~~~~~~~~   57 (957)
                      |.|...|=..|..-+...+-+-.
T Consensus        87 NAiS~~WF~~F~~~gLA~SHIL~  109 (365)
T TIGR02735        87 NAISNHWFKLFKEAGLAESHILD  109 (365)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHCC
T ss_conf             88889999998745740010015


No 324
>KOG1278 consensus
Probab=20.93  E-value=32  Score=13.77  Aligned_cols=10  Identities=40%  Similarity=0.976  Sum_probs=7.9

Q ss_pred             HHHHHHCCCC
Q ss_conf             7887521437
Q gi|254781051|r  748 ERFLQMCAEN  757 (957)
Q Consensus       748 ERfLQl~a~~  757 (957)
                      --|.|||+||
T Consensus       541 l~Yf~LC~Ed  550 (628)
T KOG1278         541 LTYFQLCAED  550 (628)
T ss_pred             HHHHHHHHCC
T ss_conf             9999986322


No 325
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=20.83  E-value=48  Score=12.46  Aligned_cols=45  Identities=27%  Similarity=0.285  Sum_probs=25.8

Q ss_pred             CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHCCCCC
Q ss_conf             4540478886257533346725887645106774436579998416020124701024677
Q gi|254781051|r  366 ERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT  426 (957)
Q Consensus       366 ~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY~tGGTiHiVvNNQIGFTT~p~d~RSs~  426 (957)
                      .+-.+.|+   |-||++|-..--.--.++++=||.             +-|.|+.|+-|++
T Consensus       188 ~r~n~~PL---GsgAlAGT~~pIDR~~tA~~LGF~-------------~~~~NSlDAVSdR  232 (614)
T PRK12308        188 TRLDTCPL---GSGALAGTAYPIDREALAHNLGFR-------------RATRNSLDSVSDR  232 (614)
T ss_pred             HHHCCCCC---CCCCCCCCCCCCCHHHHHHHCCCC-------------CCCCCHHHHHHHH
T ss_conf             98575975---431346898987999999975999-------------8667888898725


No 326
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.78  E-value=48  Score=12.45  Aligned_cols=11  Identities=18%  Similarity=0.199  Sum_probs=5.9

Q ss_pred             HHHHHHHCCCH
Q ss_conf             99999881704
Q gi|254781051|r  104 MIDAYRSYGHF  114 (957)
Q Consensus       104 LI~AYR~~GHl  114 (957)
                      -|+.-|..||.
T Consensus        30 ai~~l~~~Gi~   40 (275)
T PRK00192         30 TLKALKEKGIP   40 (275)
T ss_pred             HHHHHHHCCCE
T ss_conf             99999978999


No 327
>pfam03992 ABM Antibiotic biosynthesis monooxygenase. This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species. It's occurrence as a repeat in Streptomyces coelicolor SCO1909 is suggestive that the other proteins function as multimers. There is also a conserved histidine which is likely to be an active site residue.
Probab=20.31  E-value=34  Score=13.60  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=19.6

Q ss_pred             ECCCCCCCHHHHHHCCCCCCCCCCEEEC
Q ss_conf             2431111013432022113865311100
Q gi|254781051|r  669 NSFLSEQAVLGFEYGYSLNNLNALTIWE  696 (957)
Q Consensus       669 nS~LSE~avlgFEyGys~~~p~~L~iWE  696 (957)
                      ....+|-|+++|++--+..+|+..+++|
T Consensus        27 ~~~~~epG~l~~~l~~~~~~~~~~~~~e   54 (77)
T pfam03992        27 EASRAEPGCLGYELLRSLEDPDEYVILE   54 (77)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf             9995799945898872799997799999


No 328
>TIGR00520 asnASE_II L-asparaginases, type II; InterPro: IPR004550   L-asparaginase catalyses the conversion of L-asparagine to L-aspartate. Two related families of asparaginase (L-asparagine amidohydrolase, 3.5.1.1 from EC) are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This family describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activities , . All members are homotetrameric. ; GO: 0004067 asparaginase activity, 0006528 asparagine metabolic process.
Probab=20.28  E-value=31  Score=13.92  Aligned_cols=15  Identities=20%  Similarity=0.104  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             789999999999999
Q gi|254781051|r   94 SVKDFFQVMKMIDAY  108 (957)
Q Consensus        94 ~~~kq~rV~~LI~AY  108 (957)
                      +...++-|..||+|-
T Consensus        49 Y~vG~lgv~~Li~Av   63 (360)
T TIGR00520        49 YKVGELGVEDLIEAV   63 (360)
T ss_pred             CEEEEEEHHHHHHHH
T ss_conf             132013076787740


No 329
>pfam01521 Fe-S_biosyn Iron-sulphur cluster biosynthesis. This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins.
Probab=20.27  E-value=24  Score=14.81  Aligned_cols=33  Identities=33%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             CCCCHHHHHHCCCCCCCCCCEEECCCCCCC---CCCCHHHHHH
Q ss_conf             111013432022113865311100002442---4541022565
Q gi|254781051|r  673 SEQAVLGFEYGYSLNNLNALTIWEAQFGDF---ANGAQVILDQ  712 (957)
Q Consensus       673 SE~avlgFEyGys~~~p~~L~iWEAQFGDF---~NgAQviiDq  712 (957)
                      ..-|+-||+|+.++++       |++-+|.   .||..|+||.
T Consensus        29 ~~gGC~G~~Y~l~~~~-------~~~~~D~~~~~~g~~v~Id~   64 (91)
T pfam01521        29 RYGGCSGFSYGLTFED-------EAGEGDEVFEQDGVTVVVDE   64 (91)
T ss_pred             ECCCCCCCEEEEEECC-------CCCCCCEEEEECCCEEEEEH
T ss_conf             6699798188789853-------57778599998992999916


No 330
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.25  E-value=50  Score=12.37  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=16.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             57877778999999999840643
Q gi|254781051|r  154 VLGLESATIPEIVDVLSHLYCSN  176 (957)
Q Consensus       154 ~~g~~~~tL~eIi~~L~~tYCgs  176 (957)
                      .+|.....++.+++.|++-|-..
T Consensus        95 ~lg~~~~~i~~~L~~l~~~~~~~  117 (302)
T PRK12702         95 ALGLPYPCLRHILQQVRQDSHLD  117 (302)
T ss_pred             ECCCCHHHHHHHHHHHHHHHCCC
T ss_conf             25887999999999998975767


No 331
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=20.20  E-value=45  Score=12.67  Aligned_cols=43  Identities=12%  Similarity=0.133  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf             89999999988743689986205677888998998733435642114789
Q gi|254781051|r  562 VSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAES  611 (957)
Q Consensus       562 v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~  611 (957)
                      .....++.++-.+.      +-.|-++|.+-++. |.-.++-=-|..+|+
T Consensus       360 ~~~~~~R~~gl~~~------~~~~~lK~~~~~~a-~Gl~~~~p~l~~~~~  402 (403)
T PRK07333        360 TLLRSVRDIGLGLV------DRLPPLKSFFIRQA-AGLTGDTPRLLKGEA  402 (403)
T ss_pred             HHHHHHHHHHHHHH------HHCHHHHHHHHHHH-CCCCCCCCHHHCCCC
T ss_conf             79999999999998------52999999999996-588999864645898


No 332
>pfam06950 DUF1293 Protein of unknown function (DUF1293). This family consists of several bacterial and phage proteins of around 115 residues in length. The function of this family is unknown.
Probab=20.14  E-value=45  Score=12.66  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=13.4

Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf             22355788888671899899999998644898
Q gi|254781051|r  486 PSFTQPMMYKTIRSHKSVLQLYADSLMKNQVI  517 (957)
Q Consensus       486 P~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~i  517 (957)
                      |..-||+|-.         ..|+.+|++.|.+
T Consensus        51 pq~dqpL~Id---------~~YA~kLe~tgA~   73 (115)
T pfam06950        51 PQWDQPLMID---------HTYALKLEKTGAF   73 (115)
T ss_pred             CCCCCCEEEC---------HHHHHHHHHHCCC
T ss_conf             5568855856---------8899888860375


No 333
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=20.13  E-value=50  Score=12.35  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHCCCCEEEEECC
Q ss_conf             999999987379107998067
Q gi|254781051|r  250 IEEIIRQGVQQGVDEMILGMA  270 (957)
Q Consensus       250 L~~ii~~a~~~Gv~eiviGMa  270 (957)
                      +-+||+.|...|++-|++.--
T Consensus       109 lGaIiRsA~afGv~~vil~~~  129 (244)
T PRK11181        109 LGACLRSADAAGVHAVIVPKD  129 (244)
T ss_pred             HHHHHHHHHHCCCCEEEECCC
T ss_conf             999999999819989997899


No 334
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=20.12  E-value=50  Score=12.35  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf             9999999998737910799806765526899988537989999985588
Q gi|254781051|r  248 PAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGK  296 (957)
Q Consensus       248 P~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~  296 (957)
                      |+|+-+++..+..||++|++.+             +...+.|-..|...
T Consensus        33 Pii~~~l~~L~~~Gv~eivi~~-------------~y~~~~i~~~~~d~   68 (358)
T COG1208          33 PLIEYVLEALAAAGVEEIVLVV-------------GYLGEQIEEYFGDG   68 (358)
T ss_pred             EHHHHHHHHHHHCCCCEEEEEC-------------CCCHHHHHHHHHHC
T ss_conf             4599999999987997899987-------------74689999998626


No 335
>pfam04329 consensus
Probab=20.09  E-value=39  Score=13.12  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=14.5

Q ss_pred             CCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             405788752143782697248899999999997
Q gi|254781051|r  745 ARLERFLQMCAENNMYVANCTSPANYFHILRRQ  777 (957)
Q Consensus       745 aRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ  777 (957)
                      .=|++|+.+|...++.+|.-.....+.-++...
T Consensus        57 ~li~~F~~~a~~~g~~~~fy~v~~~~~~~~~~~   89 (135)
T pfam04329        57 ELIERFLELADAHGWRPVFYQVSEEDLPLYHDL   89 (135)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHC
T ss_conf             999999999998799889999888999999876


Done!