HHsearch results for GI: 254781051 and protein with PDBid: 2jgd_A
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=0 Score=3150.22 Aligned_cols=921 Identities=44% Similarity=0.755 Sum_probs=866.6
Q ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96238899983476367896899999999873805079899999873676433333343444322222222111233344
Q gi|254781051|r 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKK 80 (957)
Q Consensus 1 M~~~~~~~f~~sSFL~g~Na~YIEeLYekYL~DP~SVd~sWr~fF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (957)
|++++|+.|++||||+|+|++|||+||++|++||+|||++|+.||++++.+............ ........
T Consensus 1 M~~s~~k~~l~sSFL~G~Na~YIEeLYe~Yl~DP~SVd~sWr~yF~~l~~~~~~~~~~~s~~~---------~~~~~~~~ 71 (933)
T 2jgd_A 1 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTR---------EYFRRLAK 71 (933)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHHHC
T ss_conf 983488999864566788999999999999649876689999999738666788543344226---------66655302
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEEECCCCC-CCCC
Q ss_conf 555666555633678999999999999988170454016777777667877678766699978817157256657-8777
Q gi|254781051|r 81 SAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLES 159 (957)
Q Consensus 81 ~~~~~~~~~~~~~~~~kq~rV~~LI~AYR~~GHl~A~lDPLgl~~~~~~~peL~~~~yGLse~DLd~~f~~~~~~-g~~~ 159 (957)
.+........+...+.++++|.+||+|||.+||+.|+||||++.. ++.+|+|+|++|||+++|||++|.++++. |.+.
T Consensus 72 ~~~~~~~~~~~~~~~~kq~~v~~LI~AYR~~GHl~A~LDPL~l~~-~~~~~eL~~~~~GLse~DLd~~f~~~~~~~g~~~ 150 (933)
T 2jgd_A 72 DASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQ-QDKVADLDPSFHDLTEADFQETFNVGSFASGKET 150 (933)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHGGGGSCCCSSSCCC-CC---CCSSGGGGCCC-CTTSEEECTTCC---CE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC-CCCCCCCCHHHCCCCHHHHCCEEECCCCCCCCCC
T ss_conf 455556666764667889999999999998561001689999988-8889877974469897994880305766678787
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC
Q ss_conf 78999999999840643027772489989999999984145778887988999999999999989999986403362222
Q gi|254781051|r 160 ATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239 (957)
Q Consensus 160 ~tL~eIi~~L~~tYCgsIGvEymHI~d~eer~Wlq~riE~~~~~~~~s~eeK~~iL~~L~~Ae~FE~FL~~Kf~g~KRFs 239 (957)
+||+|||++|++||||+||+|||||.|++||+|||+|||+. .+.|++++|++||++|++||+||+|||+||||+||||
T Consensus 151 ~tL~eIi~~L~~~YCgsIG~EymHI~d~eer~Wl~~riE~~--~~~~s~eeK~~iL~~L~~ae~FE~FL~~Kf~g~KRFs 228 (933)
T 2jgd_A 151 MKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228 (933)
T ss_dssp EEHHHHHHHHHHHHHSSEEEECSSCCCHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 73999999999875464404432579999999999998722--7789979999999999999999999987547760673
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 56465899999999999873791079980676552689998853798999998558874322345551001502688983
Q gi|254781051|r 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQI 319 (957)
Q Consensus 240 LEG~EslIP~L~~ii~~a~~~Gv~eiviGMaHRGRLNVL~Nvl~Kp~~~iF~EF~g~~~~~~~~sGDVKYHLG~s~~~~~ 319 (957)
|||||||||+|++||+.|++.||++||||||||||||||+|||+||++.||+||+|+.. ...++||||||||+|+++++
T Consensus 229 lEG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~EF~g~~~-~~~~sGDVKYHlG~s~~~~~ 307 (933)
T 2jgd_A 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHK-EHLGTGDVKYHMGFSSDFQT 307 (933)
T ss_dssp CTTCTTHHHHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC---CCSCCCCGGGCCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEECC
T ss_conf 47701299999999999975598359983134440578998755899999997527763-12456772225740100015
Q ss_pred CCCEEEEEECCCCCCCHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 59618999717877310004455323677776416665445556544540478886257533346725887645106774
Q gi|254781051|r 320 CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGY 399 (957)
Q Consensus 320 ~g~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~d~~~~~~~~~~~~~~vlpiliHGDAAfaGQGVV~Etl~ls~l~gY 399 (957)
+|++|||+|++||||||+|||||+|+||||||+++|. ++++|||||||||||||||||||||||||+|+||
T Consensus 308 ~g~~v~lsL~~NPSHLE~VnPVv~G~~RA~Q~~~~~~---------~~~kvlpIliHGDAAf~GQGVV~Etl~ls~l~gY 378 (933)
T 2jgd_A 308 DGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEP---------SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGY 378 (933)
T ss_dssp TTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSC---------CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTT
T ss_pred CCCEEEEEECCCCCCCEECCCEEECEEEEEEEECCCC---------CCCEEEEEEEECCHHHCCCCHHHHHHHCCCCCCC
T ss_conf 9976999961697410100653411035777202688---------8762566786252664247625876405457886
Q ss_pred CCCCEEEEEECCCEECCC-CCHHCCCCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 436579998416020124-7010246778400112203405874267889999999999999997389739986421125
Q gi|254781051|r 400 TVAGNIHLIINNQIGFTT-NPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478 (957)
Q Consensus 400 ~tGGTiHiVvNNQIGFTT-~p~d~RSs~Y~TDiAK~i~aPI~HVN~DdpEav~~~~~lA~~yR~~F~kDVvIDlv~YRr~ 478 (957)
+||||||||||||||||| +|+|+|||+||||||||++||||||||||||||++|++||++||++|+|||||||||||||
T Consensus 379 ~tGGTiHiivNNQIGFTT~~p~d~RSs~YctDiAK~~~aPI~HVN~DdpEav~~a~~lA~~yR~~F~kDVvIDlvcYRR~ 458 (933)
T 2jgd_A 379 EVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 (933)
T ss_dssp CCSCCEEEEEECC---------------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_pred CCCCEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 55864899854877513798321335776205888727977896489989999999999999999688727855653146
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C
Q ss_conf 656435422355788888671899899999998644898989999999999999775666541258765666-------6
Q gi|254781051|r 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEKLGL-------L 551 (957)
Q Consensus 479 GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~~g~it~~e~~~~~~~~~~~l~~~~~~~k~~~~~~~~~-------~ 551 (957)
||||+|||+||||+||++|++|||++++|+++|+++|+||+++++++.++|++.|+++++.++++.+....+ .
T Consensus 459 GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~Li~eg~it~~e~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (933)
T 2jgd_A 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLN 538 (933)
T ss_dssp -----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSS
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88977787888976766654599889999998741687678999999999999999878887655522455444455678
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 56862666778999999998874368998620567788899899873343564211478988898863583157850100
Q gi|254781051|r 552 HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDC 631 (957)
Q Consensus 552 ~~~~~~~~T~v~~~~L~~i~~~l~~~Pe~f~~h~~v~k~~~~R~~~~~~~~~iDW~~AE~LA~~SLl~eG~~VRlsGQD~ 631 (957)
..+...++|||+.+.|++|+++++++|++|++||+|+|++++|++|++++.+|||||||+|||||||.||++||||||||
T Consensus 539 ~~~~~~~~Tgv~~~~L~~l~~~l~~~P~~f~~h~kv~ki~~~R~~~~~~~~~iDWa~AE~LAfgSLL~eG~~VRLSGQD~ 618 (933)
T 2jgd_A 539 HEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDS 618 (933)
T ss_dssp CCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 65555678877899999999998418844341056778999999985068876277899999999997697610025645
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf 22333230279997788844556344278984599982431111013432022113865311100002442454102256
Q gi|254781051|r 632 ERGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711 (957)
Q Consensus 632 ~RGTFshRHavl~dq~t~~~y~pL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~L~iWEAQFGDF~NgAQviiD 711 (957)
+||||||||||||||+|+++|+||+||+++|++|+||||+|||+||||||||||+++|++|||||||||||+||||||||
T Consensus 619 ~RGTFShRHavl~Dq~t~~~y~PL~~l~~~q~~f~v~nS~LSE~avlgFEyGys~~~p~~LviWEAQFGDF~NgAQviiD 698 (933)
T 2jgd_A 619 GRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 (933)
T ss_dssp TTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCEEEEHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 66543323136760577734753101666788738874622166665655221336873130234453244454234355
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 55420257623336813543688888887656440578875214378269724889999999999743534886898566
Q gi|254781051|r 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAP 791 (957)
Q Consensus 712 qfiss~e~KW~~~sglvllLPHGyeGqGPEHSSaRlERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tP 791 (957)
|||||||+||+|+|||||||||||||||||||||||||||||||++|||||||||||||||+|||||+|+||||||||||
T Consensus 699 qfi~sge~KW~~~sglvllLPHGyeGqGPEHSSaR~ERfLQl~a~~N~~V~~~ttpAq~FH~LRRQ~~r~~rkPLiv~tP 778 (933)
T 2jgd_A 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSP 778 (933)
T ss_dssp HTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEEC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 56421777756457758973788888897655402889999754268589746975999999999851457888699685
Q ss_pred CHHHCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 02210801268878937998603515776433444544457954576899868857899999999769986899984014
Q gi|254781051|r 792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQL 871 (957)
Q Consensus 792 KsLLR~~~a~S~l~d~~~g~~F~~vi~d~~~~~~~~~~~~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEqL 871 (957)
|||||||.|+|+|+||++|| |++||+|+. ..+|++|||||||||||||||+++|++++.+||||||||||
T Consensus 779 KsLLR~~~a~S~l~e~~~g~-F~~vi~d~~---------~~~~~~v~rvi~csGKvyydL~~~r~~~~~~~vaivRiEQL 848 (933)
T 2jgd_A 779 KSLLRHPLAVSSLEELANGT-FLPAIGEID---------ELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQL 848 (933)
T ss_dssp SGGGGCTTCCBCHHHHHHCC-CCSEECCCS---------CCCGGGCCEEEEECTTHHHHHHHHHHHTTCCSEEEEEECEE
T ss_pred HHHHCCCCCCCCHHHHCCCC-CEEECCCCC---------CCCHHCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 67655865579989917996-156368756---------57851198899907799999999999779998799985004
Q ss_pred CCCHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 868289999998537998-3998067853178457899769999875056776018975366467233867899999999
Q gi|254781051|r 872 YPFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950 (957)
Q Consensus 872 yPfP~~~l~~~l~~y~~~-e~vW~QEEp~N~GaW~~v~~rl~~~l~~~~~~~~~~~y~gR~~~aspA~G~~~~H~~e~~~ 950 (957)
||||+++|+++|++|||+ |||||||||+|||||+||+|||++++. ...+++|||||++||||||+.++|++||++
T Consensus 849 yPfP~~~l~~~l~~y~n~~~~vW~QEEp~N~GaW~~v~~rl~~~~~----~~~~l~yvgR~~~aspA~G~~~~H~~eq~~ 924 (933)
T 2jgd_A 849 YPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIP----FGASLRYAGRPASASPAVGHMSVHQKQQQD 924 (933)
T ss_dssp ESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSC----TTCEEEEEEECCCSSSSCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8998899999998589998589962465646768779999999853----699537858888788877798999999999
Q ss_pred HHHHHHC
Q ss_conf 9998719
Q gi|254781051|r 951 FIEDALK 957 (957)
Q Consensus 951 li~~a~~ 957 (957)
||++||.
T Consensus 925 i~~~a~~ 931 (933)
T 2jgd_A 925 LVNDALN 931 (933)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 9999858