RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
(957 letters)
>gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 1180 bits (3053), Expect = 0.0
Identities = 472/959 (49%), Positives = 622/959 (64%), Gaps = 63/959 (6%)
Query: 6 NKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASF 65
K F +S+L G N YIE+LY+ Y +DP+SV W F L + E
Sbjct: 1 MKQFLNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRES------FRRL 54
Query: 66 LKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNS 125
K+ + A K V+++I+AYRS GH AN+DPLG
Sbjct: 55 AKKGNDPDATLKSVK--------------------VLRLINAYRSRGHLHANLDPLGLK- 93
Query: 126 HQKDLSELSPAHYGFVKADYDRKI-CMKGVLGLESATIPEIVDVLSHLYCSNIGVEFMHI 184
+ D+ EL P +G +AD D G LG E+ T+ E++++L YC +IGVE+MHI
Sbjct: 94 -RPDVPELDPEFHGLTEADLDETFNIGDGFLGKETMTLRELIEILKKTYCGSIGVEYMHI 152
Query: 185 VDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSE 244
D E+ W++ IE + F+ EE++ IL +L AEGFE+F+ K+ GAKRF +G E
Sbjct: 153 SDPEEKRWLQERIESGKPT--FTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGE 210
Query: 245 VIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYS 304
+IP ++E+I + +QGV E+++GMAHRGRLNVL ++ K R IF EF+GK +E + S
Sbjct: 211 SLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGK-SAEPDLS 269
Query: 305 GDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISL 364
GDVKYHLG +RQ G V L L NPSHLE V+PVV GSVRA+QD
Sbjct: 270 GDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDT-------- 321
Query: 365 VERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARS 424
ER +VLP++IHGDAAFAGQG+V+ET LS L GY+V G H++INNQIGFTT+P+ ARS
Sbjct: 322 -ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARS 380
Query: 425 CTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGD 484
Y +D++K I PIFHVN DDPEAV+ +A+ +R F K VVID+VCYRR GHNEGD
Sbjct: 381 TPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGD 440
Query: 485 EPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYC 544
EPS TQP+MY+ I+ H +V +LYAD L+ VIS++E L N++ L+ ++ + Y
Sbjct: 441 EPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500
Query: 545 P------EKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMI 598
+ G L+ G V K+ LK++G + +P+ F H V++++ +R+ M
Sbjct: 501 EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMA 560
Query: 599 ETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNI 658
E G+GIDW MAE+LAF +L EG+ +RLSGQD RGTFSHRHA+L DQ+TG+ Y PL ++
Sbjct: 561 EGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHL 620
Query: 659 SKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGE 718
SK QG EV+NS LSE+AVLGFEYGYSL N L +WEAQFGDFANGAQV++DQFI++GE
Sbjct: 621 SKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGE 680
Query: 719 QKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQI 778
QKW S LV LLPHGYEGQGPEHSSARLERFLQ+CAENNM V ++PA YFH+LRRQ
Sbjct: 681 QKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQA 740
Query: 779 YDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIR 838
+PLI+M PKSLLRHK VSSL ++T G+ FQ VL D E D ++
Sbjct: 741 LRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGT-FQPVLEDIDEL----------DPKVK 789
Query: 839 RVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQ-AEIVWCQEE 897
RV+LC+GKVYYDLL+ R+ D+ ++RIEQLYPFP L +L+++ E VWCQEE
Sbjct: 790 RVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEE 849
Query: 898 PQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956
P+N GAW +I+P+LE+VL + ++RY GR SAS AVG MS H +Q +EDAL
Sbjct: 850 PKNQGAWYYIQPHLEEVL----PEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDAL 904
>gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit
[Carbohydrate transport and metabolism].
Length = 1017
Score = 970 bits (2508), Expect = 0.0
Identities = 437/992 (44%), Positives = 596/992 (60%), Gaps = 77/992 (7%)
Query: 13 SFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVA 72
FL GT+ Y+E++Y+++ EDP+SV K W F A +
Sbjct: 49 PFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYF-------RNVSAGAPPPAQASQAPLSR 101
Query: 73 SAVFSQKKSAVESSCSLGET-QSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKD-- 129
SA + +SAV + + G + ++V+D +V +I AY+ GH KA +DPLG N D
Sbjct: 102 SAAVAGTQSAVAARPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSS 161
Query: 130 -----LSELSPAHYGFVKADYDRKI--CMKGVLGLESATIP--EIVDVLSHLYCSNIGVE 180
EL+ A YGF +AD DR+ +G +++ EI+ L YC +IGVE
Sbjct: 162 VPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGESSLTLREILRRLEKAYCGSIGVE 221
Query: 181 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240
FMHI D + +W+R E +S E++R ILD+L R+ FE+F+ K+ KRFG
Sbjct: 222 FMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL 280
Query: 241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300
+G EV+IPA++ II + + GV+ +++GM HRGRLNVL+ ++ K IF EF G ++
Sbjct: 281 EGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAAD 340
Query: 301 KEYSGDVKYHLGLCCNR--QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVG 358
E SGDVKYHLG+ R ++ GK++ L L +NPSHLE VDPVV+G RA Q
Sbjct: 341 -EGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGD--- 396
Query: 359 EKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN 418
E +V+ ++IHGDAAFAGQG+V ETF LS L YT G +H+++NNQIGFTT+
Sbjct: 397 ------EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTD 450
Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478
P ARS Y +D+++ + PIFHVN DDPEAV+ V ++A +R FHK VV+D+VCYRR
Sbjct: 451 PRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH 510
Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538
GHNE DEP FTQP+MYK IR HK VLQ YA+ L+ +S+QE+ + LE ++
Sbjct: 511 GHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFE 570
Query: 539 ESESYCPEK--------------LGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTH 584
S+ Y P V +EILK IG +P+ F H
Sbjct: 571 RSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIH 630
Query: 585 KIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILC 644
+ ++R++ NR +MI++ +G+DW++AE+LAFGSL EG VRLSGQD ERGTFSHRH +L
Sbjct: 631 RGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLH 689
Query: 645 DQETGKR-YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFA 703
DQE KR Y PL ++ +Q V NS LSE VLGFE GYS+ + NAL +WEAQFGDFA
Sbjct: 690 DQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFA 749
Query: 704 NGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN------ 757
N AQ I+DQFI++G+ KW+ S LV LLPHGYEG GPEHSSAR ERFLQM ++
Sbjct: 750 NTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPD 809
Query: 758 ------------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLS 805
N V NCT+PANYFH+LRRQI+ +PLI+ PKSLLRH SS S
Sbjct: 810 EEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFS 869
Query: 806 DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA-DIY 864
+ G+ FQ V+ + GK + +++R++ C+GKVYYDL R + D+
Sbjct: 870 EFDEGTGFQRVIPE----DGKAAQN---PENVKRLVFCSGKVYYDLTKERKEVGLEGDVA 922
Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSR 924
+ R+EQL PFP D + + L+++ AEIVWCQEE +NMGAW ++EP L L +
Sbjct: 923 ITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTALKRLA---RP 979
Query: 925 VRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956
V+Y GRLPSA+ A G+ HL + +F+ A
Sbjct: 980 VKYAGRLPSAAPATGNKQTHLAEQKAFLNKAF 1011
>gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase,
E1 subunit [Carbohydrate transport and metabolism].
Length = 913
Score = 752 bits (1943), Expect = 0.0
Identities = 354/880 (40%), Positives = 520/880 (59%), Gaps = 53/880 (6%)
Query: 100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL--GL 157
V ++++A+R +GH A ++PL + ++L ELSPA YG + D G+L
Sbjct: 55 NVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRTD--------GLLSGPK 106
Query: 158 ESATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDK 217
+ ++ ++ +L +YC + +EF ++ D ER+W+ E D KEE+ +I +
Sbjct: 107 VAHSLAQLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLD-QEQLGKEERCEIAEL 165
Query: 218 LVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV 277
+++++ F+ F+ K+ KR+G +G+E ++ E++R Q ++ +I+GM HRGRLN+
Sbjct: 166 MLKSQAFDNFLATKFPTVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNL 225
Query: 278 LSQIMNKLPRSIFYEFKGKG--PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHL 335
L+ ++N P +F + G P + E GDV HL + + GK + + + NPSHL
Sbjct: 226 LTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHL 285
Query: 336 EFVDPVVIGSVRARQ-DLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLS 394
E V+PV +G R+RQ G S S VL +I+HGDAAFAGQGIV E LS
Sbjct: 286 EAVNPVAMGKTRSRQQSRGEGDYSPDS-SAPFGDHVLNVIVHGDAAFAGQGIVQECLNLS 344
Query: 395 GLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVV 454
+ + V G++HLI+NNQ+GFTT RS Y SDI+KSI P+ HVNGDDPE V+R
Sbjct: 345 YVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRAT 404
Query: 455 RMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKN 514
R+A ++ +F K V ID+ C+RR+GHNE D+P+FT P+MYK + + +SV LYA L K
Sbjct: 405 RLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKE 464
Query: 515 QVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERK---------NSVSKE 565
V+++++++ + + + KYL E + +Y P ++ V +
Sbjct: 465 GVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYD 524
Query: 566 ILKKIGSSIIRLPKSFNTHKIVERLMAN-RQKMIETGKGIDWSMAESLAFGSLCYEGYKV 624
+L+ IG + +P+ FN H + + N R K +E G IDW+ AE+LA GSL Y+G+ V
Sbjct: 525 LLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNV 584
Query: 625 RLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQ-GHCEVVNSFLSEQAVLGFEYG 683
R+SGQD RGTFSHRHA+L DQ+T + + PL ++ Q G EV NS LSE+AVLGFEYG
Sbjct: 585 RISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYG 644
Query: 684 YSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHS 743
S+ N N L IWEAQFGDF NGAQ+I+D FI +GE KWL +S LV LLPHGY+G GPEHS
Sbjct: 645 MSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHS 704
Query: 744 SARLERFLQMC--AEN-------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSL 794
S R+ERFLQ+C E NM+V N T+PA YFH+LRRQ+ +PLI++APK+L
Sbjct: 705 SCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTL 764
Query: 795 LRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDN 854
LR S+ + G+ F V+ D T K ++ +++VI C+GK YY L
Sbjct: 765 LRLPAATSTHEEFQPGTTFHNVIGD-------TIAKPEK---VKKVIFCSGKHYYTLAKE 814
Query: 855 RDMRNIAD-IYLLRIEQLYPFPEDYLIKVLSRFVQAE-IVWCQEEPQNMGAWTFIEPYLE 912
R+ R D + +LR+E L PFP L L+++ + VW QEEP+NMGAW+F+ P E
Sbjct: 815 REKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFE 874
Query: 913 KVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFI 952
+L ++ Y GR + A G H ++ +
Sbjct: 875 NLLG------QQLHYCGRPELPTPATGIGKVHKREVEEIV 908
>gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle..
Length = 265
Score = 405 bits (1042), Expect = e-113
Identities = 156/274 (56%), Positives = 200/274 (72%), Gaps = 12/274 (4%)
Query: 224 FEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMN 283
FE+F+ K+ G KRFG +G+E +IPA++E+I + + GV+E+++GMAHRGRLNVL+ ++
Sbjct: 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLG 60
Query: 284 KLPRSIFYEFKGK--GPSEKEYSGDVKYHLGLCCNRQI-CGKDVKLLLQSNPSHLEFVDP 340
K IF EF+GK P + E SGDVKYHLG +R+ GK V L L NPSHLE V+P
Sbjct: 61 KPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNP 120
Query: 341 VVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYT 400
VV+G RA+QD + ER +VLP++IHGDAAFAGQG+V ET LS L GYT
Sbjct: 121 VVMGKTRAKQDYRGD---------GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171
Query: 401 VAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF 460
G IH+++NNQIGFTT+P +RS Y +D++K IG PIFHVNGDDPEAV+R R+A+ +
Sbjct: 172 TGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEY 231
Query: 461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMY 494
R KF K VVID+VCYRR GHNE DEPSFTQP+MY
Sbjct: 232 RQKFKKDVVIDLVCYRRHGHNELDEPSFTQPLMY 265
>gnl|CDD|145763 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 174
Score = 180 bits (459), Expect = 2e-45
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 24/196 (12%)
Query: 602 KGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKD 661
K I A A L +V G D GTF+ +L
Sbjct: 1 KKIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLL----------------HP 44
Query: 662 QGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKW 721
QG V+++ ++EQA++G G +L+ L L EA FGDFAN + D I
Sbjct: 45 QGEGRVIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN---IRADAAIRHYAALG 99
Query: 722 LCTSN-LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780
+V P G GP H S E +L+ + V + PA +LR I
Sbjct: 100 KLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIP--GLKVVRPSDPAEAKGLLRAAIRR 157
Query: 781 RSSRPLIMMAPKSLLR 796
P++ P+ LLR
Sbjct: 158 DDDDPVVFRLPRQLLR 173
>gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses
thiamine pyrophosphate as a cofactor. This family
includes pyruvate dehydrogenase, 2-oxoglutarate
dehydrogenase and 2-oxoisovalerate dehydrogenase.
Length = 303
Score = 176 bits (448), Expect = 3e-44
Identities = 68/328 (20%), Positives = 128/328 (39%), Gaps = 33/328 (10%)
Query: 217 KLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLN 276
+++ E Y+ R G A++ I + G + ++ +R N
Sbjct: 2 RMMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAALNPG--DYVI-PTYRDHGN 58
Query: 277 VLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLE 336
+L++ ++ + E G + G + N + G + +
Sbjct: 59 LLARGVS--LEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGG-------NGIVGAQ 109
Query: 337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGL 396
P+ G A + G+K +++ + GD A QG E + L
Sbjct: 110 --VPLGAGIALAAK-----YRGKKEVAIT---------LFGDGA-TNQGQFFEALNFAAL 152
Query: 397 SGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRM 456
V I + NNQ +T + + TY +D ++ GIP V+G DP AV + V+
Sbjct: 153 WKLPV---IFVCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKF 209
Query: 457 AVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ-PMMYKTIRSHKSVLQLYADSLMKNQ 515
A + +I++V YR GH+ D+PS + + +R K ++ L+
Sbjct: 210 AAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRG 269
Query: 516 VISKQELQSLANNWHKYLEAEYKESESY 543
V+S++EL+ + K +E K++ES
Sbjct: 270 VVSEEELKEIEKEVRKEIEEAVKKAESD 297
>gnl|CDD|48163 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family,
E1 of PDC_ADC_BCADC subfamily, TPP-binding module;
composed of proteins similar to the E1 components of the
human pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). PDC catalyzes the
irreversible oxidative decarboxylation of pyruvate to
produce acetyl-CoA in the bridging step between
glycolysis and the citric acid cycle. ADC participates
in the breakdown of acetoin while BCADC participates in
the breakdown of branched chain amino acids. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate (branched chain 2-oxo acids
derived from the transamination of leucine, valine and
isoleucine)..
Length = 293
Score = 64.8 bits (158), Expect = 1e-10
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 14/168 (8%)
Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436
GD A +G E + L V I + NN +T S + T +D + + G
Sbjct: 134 GDGA-TNEGDFHEALNFAALWKLPV---IFVCENNGYAISTPTSRQTAGTSIADRAAAYG 189
Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496
IP V+G+D AV + AV +I+ V YR GH+ D+PS Y+T
Sbjct: 190 IPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS-----RYRT 244
Query: 497 -----IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE 539
+ + L++ +++++EL ++ +E +
Sbjct: 245 KEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEF 292
>gnl|CDD|31269 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 62.6 bits (152), Expect = 5e-10
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436
GD A QG E + + V + +I NNQ + S + + + + G
Sbjct: 167 GDGA-TNQGDFHEALNFAAVWKLPV---VFVIENNQYAISVPRSRQTAAEIIAARAAAYG 222
Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496
IP V+G+D AV + AV +I+ V YR GH+ D+PS +
Sbjct: 223 IPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVE 282
Query: 497 IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESES 542
+ + L++ ++S++EL+++ ++ + +E+
Sbjct: 283 EWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEA 328
>gnl|CDD|35446 KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, alpha subunit
[Energy production and conversion].
Length = 394
Score = 45.3 bits (107), Expect = 8e-05
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 373 LIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDIS 432
++GD A A QG V E F ++ L V I + NN G T+ A + T +
Sbjct: 191 FALYGDGA-ANQGQVFEAFNMAALWKLPV---IFVCENNHYGMGTSAERASAST---EYY 243
Query: 433 KSIG-IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP 491
K IP V+G D AV + A + ++ +++++ YR GH+ D +
Sbjct: 244 KRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGT---- 299
Query: 492 MMYKT------IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCP 545
Y+T +R + ++ L++ + +++EL+++ K ++ + + P
Sbjct: 300 -SYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATA-SP 357
Query: 546 E 546
E
Sbjct: 358 E 358
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit;
Reviewed.
Length = 341
Score = 34.1 bits (78), Expect = 0.17
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 405 IHLIINNQ--IGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRM 462
I ++ NNQ IG + S++ + +++ G+P V+G D AV V + AV
Sbjct: 189 IFVVENNQWAIGMAHHRSTSIPEIHKK--AEAFGLPGIEVDGMDVLAVREVAKEAVERAR 246
Query: 463 KFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQEL 522
+ +I+ + YR GH+ D P + K + ++ ++ N++ S++EL
Sbjct: 247 QGDGPTLIEALTYRFRGHSLAD-PDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKEL 305
Query: 523 QSLAN 527
+
Sbjct: 306 NKIQR 310
>gnl|CDD|35745 KOG0525, KOG0525, KOG0525, Branched chain alpha-keto acid
dehydrogenase E1, beta subunit [Energy production and
conversion].
Length = 362
Score = 33.5 bits (76), Expect = 0.28
Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 663 GHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWL 722
G V N+ L EQ ++GF G L + A I E QF D+ A DQ + +
Sbjct: 85 GKDRVFNTPLCEQGIVGF--GIGLAAMGATAIAEIQFADYIFPA---FDQIVNEAAKFRY 139
Query: 723 CTSN------LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776
+ N L P G G G + S E F + + SP +L
Sbjct: 140 RSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPR--SPRQAKGLLLS 197
Query: 777 QIYDRSSRPLIMMAPKSLLR 796
I D + P I PK L R
Sbjct: 198 CIRDPN--PCIFFEPKILYR 215
>gnl|CDD|146905 pfam04497, Pox_E2, Poxvirus E2 protein. This family of proteins is
restricted to Poxviridae. It contains the proteins E2
and O1 which are uncharacterized.
Length = 726
Score = 32.7 bits (75), Expect = 0.47
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 11/140 (7%)
Query: 757 NNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAV 816
N + + T +L++ + +I ++L + + ++ G
Sbjct: 192 VNDGLLSLTDIDKAIELLKKYPSSNDTIRVIDYLNDAVLSSEEFKEFVIELIVGGNLPDY 251
Query: 817 LSDDAEY-HGKTS-VKLKEDSHIRRVIL------CTGKVYYDLLDNRDMRNIA---DIYL 865
L +Y + L + I I +D L ++ I D Y
Sbjct: 252 LPYANDYLSDRVPDDSLIREYGIYSNIFFDDRPDLAEYTDFDTLTKEELSFICKYIDRYD 311
Query: 866 LRIEQLYPFPEDYLIKVLSR 885
+ P D L + L
Sbjct: 312 AKARIFANVPRDVLTEELCM 331
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Y4yA. This subfamily is composed
of the hypothetical Rhizobium sp. protein Y4yA and
similar uncharacterized bacterial proteins. These
proteins are homologous to eukaryotic ornithine
decarboxylase (ODC) and diaminopimelate decarboxylase
(DapDC). ODC and DapDC are fold type III PLP-dependent
enzymes that contain an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain,
similar to bacterial alanine racemases. ODC participates
in the formation of putrescine by catalyzing the
decarboxylation of ornithine, the first step in
polyamine biosynthesis. DapDC participates in the last
step of lysine biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases.
Length = 423
Score = 32.6 bits (75), Expect = 0.55
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 92 TQSVKDFFQVMKMIDAYRSYGHFKANID-----PLGYNSHQKD----LSELSPAHYG 139
Q V + + +ID R+ G ID P+ Y + + L+ L+ A YG
Sbjct: 182 AQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALYG 238
>gnl|CDD|31018 COG0674, PorA, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[Energy production and conversion].
Length = 365
Score = 31.5 bits (71), Expect = 1.1
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 839 RVILCTGKVYYDLLDNRDMRNIADIY---LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQ 895
VI+ G + LL++ L PFP + + +VL + ++
Sbjct: 259 IVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVL--- 315
Query: 896 EEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGR 930
+ EP +VL + SR + GR
Sbjct: 316 --DVEISLGGLAEPLYLEVL-AALYVESRYKLGGR 347
>gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related
nucleotide-binding proteins [Signal transduction
mechanisms].
Length = 154
Score = 30.7 bits (68), Expect = 2.1
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 179 VEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRF 238
+ + ++D +E + + +E + + + L A+ A+
Sbjct: 37 LILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAK----------ALAEAA 86
Query: 239 GADGSEVII----PAIEEIIRQGVQQGVDEMILGMAHRGRL------NVLSQIMNKLP 286
G E + P+ EEI+ ++ D +++G R L +V +++ P
Sbjct: 87 GVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAP 144
>gnl|CDD|29949 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea, which are
member of the MipB/TalC subfamily of class I aldolases.
FSA catalyze an aldol cleavage of fructose 6-phosphate
and do not utilize fructose, fructose 1-phosphate,
fructose 1,6-phosphate, or dihydroxyacetone phosphate.
The enzymes belong to the transaldolase family that
serves in transfer reactions in the pentose phosphate
cycle, and are more distantly related to fructose
1,6-bisphosphate aldolase..
Length = 211
Score = 30.5 bits (69), Expect = 2.2
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 414 GFTTNPS----SARSCTYA--SDISKSIGIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHK 466
G TTNPS S R A +I + I P+ V D E ++ R
Sbjct: 23 GVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLA----SLGG 78
Query: 467 SVVIDI 472
+VV+ I
Sbjct: 79 NVVVKI 84
>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
[Amino acid transport and metabolism].
Length = 856
Score = 30.3 bits (68), Expect = 2.4
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 80 KSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSE 132
K E+ C++ S + FF + I K + G N KD+++
Sbjct: 564 KGGYEADCTVSR-LSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTD 615
>gnl|CDD|133345 cd04145, M_R_Ras_like, M-Ras/R-Ras-like subfamily. This subfamily
contains R-Ras2/TC21, M-Ras/R-Ras3, and related members
of the Ras family. M-Ras is expressed in
lympho-hematopoetic cells. It interacts with some of
the known Ras effectors, but appears to also have its
own effectors. Expression of mutated M-Ras leads to
transformation of several types of cell lines, including
hematopoietic cells, mammary epithelial cells, and
fibroblasts. Overexpression of M-Ras is observed in
carcinomas from breast, uterus, thyroid, stomach, colon,
kidney, lung, and rectum. In addition, expression of a
constitutively active M-Ras mutant in murine bone marrow
induces a malignant mast cell leukemia that is distinct
from the monocytic leukemia induced by H-Ras. TC21,
along with H-Ras, has been shown to regulate the
branching morphogenesis of ureteric bud cell branching
in mice. Most Ras proteins contain a lipid modification
site at the C-terminus, with a typical sequence motif
CaaX, where a = an aliphatic amino acid and X = any
amino acid. Lipid binding is essential for membrane
attachment, a key feature of most Ras proteins. Due to
the presence of truncated sequences in this CD, the
lipid modification site is not available for annotation.
Length = 164
Score = 30.5 bits (69), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 771 FHILRRQIYDRSSRPLIMMAPKSLLRHKRVVS 802
FH ++ DR P+I++ K+ L H+R VS
Sbjct: 95 FHTQILRVKDRDEFPMILVGNKADLEHQRKVS 126
>gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 486
Score = 30.1 bits (67), Expect = 2.8
Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 7/166 (4%)
Query: 792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDL 851
K H R + + A L D E + LK D+ + G Y
Sbjct: 157 KLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-Y 215
Query: 852 LDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYL 911
DN D LR++ P+ K S + V + + + Y
Sbjct: 216 NDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY- 269
Query: 912 EKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK 957
E ++ D S + +L V L + S +ALK
Sbjct: 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315
>gnl|CDD|30096 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward..
Length = 321
Score = 30.3 bits (68), Expect = 3.0
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVL-------SDDAEYHGKTSVKLK 832
+RSSR ++ + D G+V + L S+ A G + K
Sbjct: 191 ERSSRS------HTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRK 243
Query: 833 EDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLRIEQ 870
E S I + +L G V L + ++ +I D L RI Q
Sbjct: 244 EGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQ 283
>gnl|CDD|34786 COG5187, RPN7, 26S proteasome regulatory complex component,
contains PCI domain [Posttranslational modification,
protein turnover, chaperones].
Length = 412
Score = 29.6 bits (66), Expect = 4.0
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 520 QELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILK----KIGSSII 575
+E + N + EA+ +E YC ++ + NG + + + + I
Sbjct: 103 REKEED-NGETEGSEADRNIAEYYC--QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKI 159
Query: 576 RLPKSFNTHKIVERLMANRQKMIETGKGIDW 606
RL + K+VE + +IE KG DW
Sbjct: 160 RLGLIYGDRKVVEESLEVADDIIE--KGGDW 188
>gnl|CDD|80364 cd04821, PA_M28_1_2, PA_M28_1_2: Protease-associated (PA) domain,
peptidase family M28, subfamily-1, subgroup 2. A
subgroup of PA-domain containing proteins belonging to
the peptidase family M28. Family M28 contains
aminopeptidases and carboxypeptidases, and has
co-catalytic zinc ions. The PA domain is an insert
domain in a diverse fraction of proteases. The
significance of the PA domain to many of the proteins in
which it is inserted is undetermined. It may be a
protein-protein interaction domain. At peptidase active
sites, the PA domain may participate in substrate
binding and/or promoting conformational changes, which
influence the stability and accessibility of the site to
substrate. Proteins into which the PA domain is inserted
include the following members of the peptidase family
M28: i) prostate-specific membrane antigen (PSMA), ii)
yeast aminopeptidase Y, and ii) human TfR (transferrin
receptor)1 and human TfR2. The proteins listed above
belong to other subgroups; relatively little is known
about proteins in this subgroup..
Length = 157
Score = 29.5 bits (66), Expect = 5.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSS---ARSCTY 427
+ F G GIV+ +G G V G +I+ N GF T S ++ TY
Sbjct: 21 LKDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTY 77
>gnl|CDD|39417 KOG4216, KOG4216, KOG4216, Steroid hormone nuclear receptor
[Transcription].
Length = 479
Score = 28.9 bits (64), Expect = 7.5
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 173 YCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKY 232
YCS E V E D + I + + EE I + E E + +
Sbjct: 221 YCSFTNGETSPTVSMAELDHLAQNIIKSHLETQYLLEELHQITWQTFDQEEIENY---QN 277
Query: 233 KGAKRFGADGSEVIIPAIEEII 254
KG + + + PAI+ ++
Sbjct: 278 KGREEMWELCAIKLTPAIQYVV 299
>gnl|CDD|58605 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the
microbial/chloroplast uridine monophosphate kinase
(uridylate kinase) enzyme that catalyzes UMP
phosphorylation and plays a key role in pyrimidine
nucleotide biosynthesis. Regulation of this process is
via feed-back control and via gene repression of
carbamoyl phosphate synthetase (the first enzyme of the
pyrimidine biosynthesis pathway). The UMP kinases of E.
coli (Ec) and Pyrococcus furiosus (Pf) are known to
function as homohexamers, with GTP and UTP being
allosteric effectors. Like other related enzymes
(carbamate kinase, aspartokinase, and N-acetylglutamate
kinase) the E. coli and most bacterial UMPKs have a
conserved, N-terminal, lysine residue proposed to
function in the catalysis of the phosphoryl group
transfer, whereas most archaeal UMPKs appear to lack
this residue and the Pyrococcus furiosus structure has
an additional Mg ion bound to the ATP molecule which is
proposed to function as the catalysis instead. Also
included in this CD are the alpha and beta subunits of
the Mo storage protein (MosA and MosB) characterized as
an alpha4-beta4 octamer containing an ATP-dependent,
polynuclear molybdenum-oxide cluster. These and related
sequences in this CD are members of the Amino Acid
Kinase Superfamily (AAK)..
Length = 229
Score = 28.6 bits (64), Expect = 9.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 428 ASDISKSIGIPIFHVNGDDPEAVIRVVR 455
A + + IPI NG P ++R ++
Sbjct: 193 ALTLCRRNKIPIIVFNGLKPGNLLRALK 220
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,622,261
Number of extensions: 632709
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1408
Number of HSP's successfully gapped: 34
Length of query: 957
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 854
Effective length of database: 4,038,010
Effective search space: 3448460540
Effective search space used: 3448460540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)