RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (957 letters) >gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]. Length = 906 Score = 1180 bits (3053), Expect = 0.0 Identities = 472/959 (49%), Positives = 622/959 (64%), Gaps = 63/959 (6%) Query: 6 NKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASF 65 K F +S+L G N YIE+LY+ Y +DP+SV W F L + E Sbjct: 1 MKQFLNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRES------FRRL 54 Query: 66 LKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNS 125 K+ + A K V+++I+AYRS GH AN+DPLG Sbjct: 55 AKKGNDPDATLKSVK--------------------VLRLINAYRSRGHLHANLDPLGLK- 93 Query: 126 HQKDLSELSPAHYGFVKADYDRKI-CMKGVLGLESATIPEIVDVLSHLYCSNIGVEFMHI 184 + D+ EL P +G +AD D G LG E+ T+ E++++L YC +IGVE+MHI Sbjct: 94 -RPDVPELDPEFHGLTEADLDETFNIGDGFLGKETMTLRELIEILKKTYCGSIGVEYMHI 152 Query: 185 VDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSE 244 D E+ W++ IE + F+ EE++ IL +L AEGFE+F+ K+ GAKRF +G E Sbjct: 153 SDPEEKRWLQERIESGKPT--FTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGE 210 Query: 245 VIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYS 304 +IP ++E+I + +QGV E+++GMAHRGRLNVL ++ K R IF EF+GK +E + S Sbjct: 211 SLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGK-SAEPDLS 269 Query: 305 GDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISL 364 GDVKYHLG +RQ G V L L NPSHLE V+PVV GSVRA+QD Sbjct: 270 GDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDT-------- 321 Query: 365 VERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARS 424 ER +VLP++IHGDAAFAGQG+V+ET LS L GY+V G H++INNQIGFTT+P+ ARS Sbjct: 322 -ERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARS 380 Query: 425 CTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGD 484 Y +D++K I PIFHVN DDPEAV+ +A+ +R F K VVID+VCYRR GHNEGD Sbjct: 381 TPYCTDVAKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGD 440 Query: 485 EPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYC 544 EPS TQP+MY+ I+ H +V +LYAD L+ VIS++E L N++ L+ ++ + Y Sbjct: 441 EPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500 Query: 545 P------EKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMI 598 + G L+ G V K+ LK++G + +P+ F H V++++ +R+ M Sbjct: 501 EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMA 560 Query: 599 ETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNI 658 E G+GIDW MAE+LAF +L EG+ +RLSGQD RGTFSHRHA+L DQ+TG+ Y PL ++ Sbjct: 561 EGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHL 620 Query: 659 SKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGE 718 SK QG EV+NS LSE+AVLGFEYGYSL N L +WEAQFGDFANGAQV++DQFI++GE Sbjct: 621 SKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGE 680 Query: 719 QKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQI 778 QKW S LV LLPHGYEGQGPEHSSARLERFLQ+CAENNM V ++PA YFH+LRRQ Sbjct: 681 QKWGRMSGLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQYFHLLRRQA 740 Query: 779 YDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIR 838 +PLI+M PKSLLRHK VSSL ++T G+ FQ VL D E D ++ Sbjct: 741 LRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGT-FQPVLEDIDEL----------DPKVK 789 Query: 839 RVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQ-AEIVWCQEE 897 RV+LC+GKVYYDLL+ R+ D+ ++RIEQLYPFP L +L+++ E VWCQEE Sbjct: 790 RVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEE 849 Query: 898 PQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956 P+N GAW +I+P+LE+VL + ++RY GR SAS AVG MS H +Q +EDAL Sbjct: 850 PKNQGAWYYIQPHLEEVL----PEGDKLRYAGRPASASPAVGSMSVHQKQQEKLLEDAL 904 >gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]. Length = 1017 Score = 970 bits (2508), Expect = 0.0 Identities = 437/992 (44%), Positives = 596/992 (60%), Gaps = 77/992 (7%) Query: 13 SFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVA 72 FL GT+ Y+E++Y+++ EDP+SV K W F A + Sbjct: 49 PFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYF-------RNVSAGAPPPAQASQAPLSR 101 Query: 73 SAVFSQKKSAVESSCSLGET-QSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKD-- 129 SA + +SAV + + G + ++V+D +V +I AY+ GH KA +DPLG N D Sbjct: 102 SAAVAGTQSAVAARPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSS 161 Query: 130 -----LSELSPAHYGFVKADYDRKI--CMKGVLGLESATIP--EIVDVLSHLYCSNIGVE 180 EL+ A YGF +AD DR+ +G +++ EI+ L YC +IGVE Sbjct: 162 VPADIPEELTLAFYGFTEADLDREFHLPTTTFIGGGESSLTLREILRRLEKAYCGSIGVE 221 Query: 181 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240 FMHI D + +W+R E +S E++R ILD+L R+ FE+F+ K+ KRFG Sbjct: 222 FMHINDLEQCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFGL 280 Query: 241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300 +G EV+IPA++ II + + GV+ +++GM HRGRLNVL+ ++ K IF EF G ++ Sbjct: 281 EGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAAD 340 Query: 301 KEYSGDVKYHLGLCCNR--QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVG 358 E SGDVKYHLG+ R ++ GK++ L L +NPSHLE VDPVV+G RA Q Sbjct: 341 -EGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGD--- 396 Query: 359 EKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTN 418 E +V+ ++IHGDAAFAGQG+V ETF LS L YT G +H+++NNQIGFTT+ Sbjct: 397 ------EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTD 450 Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478 P ARS Y +D+++ + PIFHVN DDPEAV+ V ++A +R FHK VV+D+VCYRR Sbjct: 451 PRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRH 510 Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538 GHNE DEP FTQP+MYK IR HK VLQ YA+ L+ +S+QE+ + LE ++ Sbjct: 511 GHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFE 570 Query: 539 ESESYCPEK--------------LGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTH 584 S+ Y P V +EILK IG +P+ F H Sbjct: 571 RSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIH 630 Query: 585 KIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILC 644 + ++R++ NR +MI++ +G+DW++AE+LAFGSL EG VRLSGQD ERGTFSHRH +L Sbjct: 631 RGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLH 689 Query: 645 DQETGKR-YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFA 703 DQE KR Y PL ++ +Q V NS LSE VLGFE GYS+ + NAL +WEAQFGDFA Sbjct: 690 DQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWEAQFGDFA 749 Query: 704 NGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAEN------ 757 N AQ I+DQFI++G+ KW+ S LV LLPHGYEG GPEHSSAR ERFLQM ++ Sbjct: 750 NTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPD 809 Query: 758 ------------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLS 805 N V NCT+PANYFH+LRRQI+ +PLI+ PKSLLRH SS S Sbjct: 810 EEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFS 869 Query: 806 DMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIA-DIY 864 + G+ FQ V+ + GK + +++R++ C+GKVYYDL R + D+ Sbjct: 870 EFDEGTGFQRVIPE----DGKAAQN---PENVKRLVFCSGKVYYDLTKERKEVGLEGDVA 922 Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSR 924 + R+EQL PFP D + + L+++ AEIVWCQEE +NMGAW ++EP L L + Sbjct: 923 ITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTALKRLA---RP 979 Query: 925 VRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956 V+Y GRLPSA+ A G+ HL + +F+ A Sbjct: 980 VKYAGRLPSAAPATGNKQTHLAEQKAFLNKAF 1011 >gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]. Length = 913 Score = 752 bits (1943), Expect = 0.0 Identities = 354/880 (40%), Positives = 520/880 (59%), Gaps = 53/880 (6%) Query: 100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL--GL 157 V ++++A+R +GH A ++PL + ++L ELSPA YG + D G+L Sbjct: 55 NVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRTD--------GLLSGPK 106 Query: 158 ESATIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDK 217 + ++ ++ +L +YC + +EF ++ D ER+W+ E D KEE+ +I + Sbjct: 107 VAHSLAQLEQLLKDIYCGSTSIEFSYVEDIEEREWLARNFETLD-QEQLGKEERCEIAEL 165 Query: 218 LVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNV 277 +++++ F+ F+ K+ KR+G +G+E ++ E++R Q ++ +I+GM HRGRLN+ Sbjct: 166 MLKSQAFDNFLATKFPTVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNL 225 Query: 278 LSQIMNKLPRSIFYEFKGKG--PSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHL 335 L+ ++N P +F + G P + E GDV HL + + GK + + + NPSHL Sbjct: 226 LTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHL 285 Query: 336 EFVDPVVIGSVRARQ-DLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLS 394 E V+PV +G R+RQ G S S VL +I+HGDAAFAGQGIV E LS Sbjct: 286 EAVNPVAMGKTRSRQQSRGEGDYSPDS-SAPFGDHVLNVIVHGDAAFAGQGIVQECLNLS 344 Query: 395 GLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVV 454 + + V G++HLI+NNQ+GFTT RS Y SDI+KSI P+ HVNGDDPE V+R Sbjct: 345 YVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRAT 404 Query: 455 RMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKN 514 R+A ++ +F K V ID+ C+RR+GHNE D+P+FT P+MYK + + +SV LYA L K Sbjct: 405 RLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEARESVPDLYAQQLAKE 464 Query: 515 QVISKQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERK---------NSVSKE 565 V+++++++ + + + KYL E + +Y P ++ V + Sbjct: 465 GVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYD 524 Query: 566 ILKKIGSSIIRLPKSFNTHKIVERLMAN-RQKMIETGKGIDWSMAESLAFGSLCYEGYKV 624 +L+ IG + +P+ FN H + + N R K +E G IDW+ AE+LA GSL Y+G+ V Sbjct: 525 LLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNV 584 Query: 625 RLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQ-GHCEVVNSFLSEQAVLGFEYG 683 R+SGQD RGTFSHRHA+L DQ+T + + PL ++ Q G EV NS LSE+AVLGFEYG Sbjct: 585 RISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYG 644 Query: 684 YSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHS 743 S+ N N L IWEAQFGDF NGAQ+I+D FI +GE KWL +S LV LLPHGY+G GPEHS Sbjct: 645 MSIENPNNLIIWEAQFGDFFNGAQIIIDTFIVSGETKWLESSGLVMLLPHGYDGAGPEHS 704 Query: 744 SARLERFLQMC--AEN-------NMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSL 794 S R+ERFLQ+C E NM+V N T+PA YFH+LRRQ+ +PLI++APK+L Sbjct: 705 SCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTL 764 Query: 795 LRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDN 854 LR S+ + G+ F V+ D T K ++ +++VI C+GK YY L Sbjct: 765 LRLPAATSTHEEFQPGTTFHNVIGD-------TIAKPEK---VKKVIFCSGKHYYTLAKE 814 Query: 855 RDMRNIAD-IYLLRIEQLYPFPEDYLIKVLSRFVQAE-IVWCQEEPQNMGAWTFIEPYLE 912 R+ R D + +LR+E L PFP L L+++ + VW QEEP+NMGAW+F+ P E Sbjct: 815 REKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFE 874 Query: 913 KVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFI 952 +L ++ Y GR + A G H ++ + Sbjct: 875 NLLG------QQLHYCGRPELPTPATGIGKVHKREVEEIV 908 >gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.. Length = 265 Score = 405 bits (1042), Expect = e-113 Identities = 156/274 (56%), Positives = 200/274 (72%), Gaps = 12/274 (4%) Query: 224 FEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMN 283 FE+F+ K+ G KRFG +G+E +IPA++E+I + + GV+E+++GMAHRGRLNVL+ ++ Sbjct: 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLG 60 Query: 284 KLPRSIFYEFKGK--GPSEKEYSGDVKYHLGLCCNRQI-CGKDVKLLLQSNPSHLEFVDP 340 K IF EF+GK P + E SGDVKYHLG +R+ GK V L L NPSHLE V+P Sbjct: 61 KPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNP 120 Query: 341 VVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYT 400 VV+G RA+QD + ER +VLP++IHGDAAFAGQG+V ET LS L GYT Sbjct: 121 VVMGKTRAKQDYRGD---------GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171 Query: 401 VAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSF 460 G IH+++NNQIGFTT+P +RS Y +D++K IG PIFHVNGDDPEAV+R R+A+ + Sbjct: 172 TGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEY 231 Query: 461 RMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMY 494 R KF K VVID+VCYRR GHNE DEPSFTQP+MY Sbjct: 232 RQKFKKDVVIDLVCYRRHGHNELDEPSFTQPLMY 265 >gnl|CDD|145763 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. Length = 174 Score = 180 bits (459), Expect = 2e-45 Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 24/196 (12%) Query: 602 KGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKD 661 K I A A L +V G D GTF+ +L Sbjct: 1 KKIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLL----------------HP 44 Query: 662 QGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKW 721 QG V+++ ++EQA++G G +L+ L L EA FGDFAN + D I Sbjct: 45 QGEGRVIDTGIAEQAMVGIANGMALHGL--LPPVEATFGDFAN---IRADAAIRHYAALG 99 Query: 722 LCTSN-LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780 +V P G GP H S E +L+ + V + PA +LR I Sbjct: 100 KLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIP--GLKVVRPSDPAEAKGLLRAAIRR 157 Query: 781 RSSRPLIMMAPKSLLR 796 P++ P+ LLR Sbjct: 158 DDDDPVVFRLPRQLLR 173 >gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 Score = 176 bits (448), Expect = 3e-44 Identities = 68/328 (20%), Positives = 128/328 (39%), Gaps = 33/328 (10%) Query: 217 KLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLN 276 +++ E Y+ R G A++ I + G + ++ +R N Sbjct: 2 RMMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAALNPG--DYVI-PTYRDHGN 58 Query: 277 VLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLE 336 +L++ ++ + E G + G + N + G + + Sbjct: 59 LLARGVS--LEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGG-------NGIVGAQ 109 Query: 337 FVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGL 396 P+ G A + G+K +++ + GD A QG E + L Sbjct: 110 --VPLGAGIALAAK-----YRGKKEVAIT---------LFGDGA-TNQGQFFEALNFAAL 152 Query: 397 SGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRM 456 V I + NNQ +T + + TY +D ++ GIP V+G DP AV + V+ Sbjct: 153 WKLPV---IFVCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKF 209 Query: 457 AVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQ-PMMYKTIRSHKSVLQLYADSLMKNQ 515 A + +I++V YR GH+ D+PS + + +R K ++ L+ Sbjct: 210 AAERARTGNGPTLIELVTYRYGGHSMSDDPSTYRTREEVEEVRKKKDPIKRLKKHLVSRG 269 Query: 516 VISKQELQSLANNWHKYLEAEYKESESY 543 V+S++EL+ + K +E K++ES Sbjct: 270 VVSEEELKEIEKEVRKEIEEAVKKAESD 297 >gnl|CDD|48163 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).. Length = 293 Score = 64.8 bits (158), Expect = 1e-10 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 14/168 (8%) Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436 GD A +G E + L V I + NN +T S + T +D + + G Sbjct: 134 GDGA-TNEGDFHEALNFAALWKLPV---IFVCENNGYAISTPTSRQTAGTSIADRAAAYG 189 Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496 IP V+G+D AV + AV +I+ V YR GH+ D+PS Y+T Sbjct: 190 IPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS-----RYRT 244 Query: 497 -----IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE 539 + + L++ +++++EL ++ +E + Sbjct: 245 KEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEF 292 >gnl|CDD|31269 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]. Length = 358 Score = 62.6 bits (152), Expect = 5e-10 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 4/166 (2%) Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIG 436 GD A QG E + + V + +I NNQ + S + + + + G Sbjct: 167 GDGA-TNQGDFHEALNFAAVWKLPV---VFVIENNQYAISVPRSRQTAAEIIAARAAAYG 222 Query: 437 IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKT 496 IP V+G+D AV + AV +I+ V YR GH+ D+PS + Sbjct: 223 IPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVE 282 Query: 497 IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESES 542 + + L++ ++S++EL+++ ++ + +E+ Sbjct: 283 EWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEA 328 >gnl|CDD|35446 KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]. Length = 394 Score = 45.3 bits (107), Expect = 8e-05 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 20/181 (11%) Query: 373 LIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDIS 432 ++GD A A QG V E F ++ L V I + NN G T+ A + T + Sbjct: 191 FALYGDGA-ANQGQVFEAFNMAALWKLPV---IFVCENNHYGMGTSAERASAST---EYY 243 Query: 433 KSIG-IPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP 491 K IP V+G D AV + A + ++ +++++ YR GH+ D + Sbjct: 244 KRGDYIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGT---- 299 Query: 492 MMYKT------IRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCP 545 Y+T +R + ++ L++ + +++EL+++ K ++ + + P Sbjct: 300 -SYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATA-SP 357 Query: 546 E 546 E Sbjct: 358 E 358 >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed. Length = 341 Score = 34.1 bits (78), Expect = 0.17 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%) Query: 405 IHLIINNQ--IGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRM 462 I ++ NNQ IG + S++ + +++ G+P V+G D AV V + AV Sbjct: 189 IFVVENNQWAIGMAHHRSTSIPEIHKK--AEAFGLPGIEVDGMDVLAVREVAKEAVERAR 246 Query: 463 KFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQEL 522 + +I+ + YR GH+ D P + K + ++ ++ N++ S++EL Sbjct: 247 QGDGPTLIEALTYRFRGHSLAD-PDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKEL 305 Query: 523 QSLAN 527 + Sbjct: 306 NKIQR 310 >gnl|CDD|35745 KOG0525, KOG0525, KOG0525, Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]. Length = 362 Score = 33.5 bits (76), Expect = 0.28 Identities = 39/140 (27%), Positives = 52/140 (37%), Gaps = 15/140 (10%) Query: 663 GHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWL 722 G V N+ L EQ ++GF G L + A I E QF D+ A DQ + + Sbjct: 85 GKDRVFNTPLCEQGIVGF--GIGLAAMGATAIAEIQFADYIFPA---FDQIVNEAAKFRY 139 Query: 723 CTSN------LVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776 + N L P G G G + S E F + + SP +L Sbjct: 140 RSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPR--SPRQAKGLLLS 197 Query: 777 QIYDRSSRPLIMMAPKSLLR 796 I D + P I PK L R Sbjct: 198 CIRDPN--PCIFFEPKILYR 215 >gnl|CDD|146905 pfam04497, Pox_E2, Poxvirus E2 protein. This family of proteins is restricted to Poxviridae. It contains the proteins E2 and O1 which are uncharacterized. Length = 726 Score = 32.7 bits (75), Expect = 0.47 Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 11/140 (7%) Query: 757 NNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAV 816 N + + T +L++ + +I ++L + + ++ G Sbjct: 192 VNDGLLSLTDIDKAIELLKKYPSSNDTIRVIDYLNDAVLSSEEFKEFVIELIVGGNLPDY 251 Query: 817 LSDDAEY-HGKTS-VKLKEDSHIRRVIL------CTGKVYYDLLDNRDMRNIA---DIYL 865 L +Y + L + I I +D L ++ I D Y Sbjct: 252 LPYANDYLSDRVPDDSLIREYGIYSNIFFDDRPDLAEYTDFDTLTKEELSFICKYIDRYD 311 Query: 866 LRIEQLYPFPEDYLIKVLSR 885 + P D L + L Sbjct: 312 AKARIFANVPRDVLTEELCM 331 >gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases. Length = 423 Score = 32.6 bits (75), Expect = 0.55 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 92 TQSVKDFFQVMKMIDAYRSYGHFKANID-----PLGYNSHQKD----LSELSPAHYG 139 Q V + + +ID R+ G ID P+ Y + + L+ L+ A YG Sbjct: 182 AQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALYG 238 >gnl|CDD|31018 COG0674, PorA, Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]. Length = 365 Score = 31.5 bits (71), Expect = 1.1 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 9/95 (9%) Query: 839 RVILCTGKVYYDLLDNRDMRNIADIY---LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQ 895 VI+ G + LL++ L PFP + + +VL + ++ Sbjct: 259 IVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVL--- 315 Query: 896 EEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGR 930 + EP +VL + SR + GR Sbjct: 316 --DVEISLGGLAEPLYLEVL-AALYVESRYKLGGR 347 >gnl|CDD|30934 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]. Length = 154 Score = 30.7 bits (68), Expect = 2.1 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 20/118 (16%) Query: 179 VEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRF 238 + + ++D +E + + +E + + + L A+ A+ Sbjct: 37 LILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAK----------ALAEAA 86 Query: 239 GADGSEVII----PAIEEIIRQGVQQGVDEMILGMAHRGRL------NVLSQIMNKLP 286 G E + P+ EEI+ ++ D +++G R L +V +++ P Sbjct: 87 GVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAP 144 >gnl|CDD|29949 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.. Length = 211 Score = 30.5 bits (69), Expect = 2.2 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 414 GFTTNPS----SARSCTYA--SDISKSIGIPI-FHVNGDDPEAVIRVVRMAVSFRMKFHK 466 G TTNPS S R A +I + I P+ V D E ++ R Sbjct: 23 GVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLA----SLGG 78 Query: 467 SVVIDI 472 +VV+ I Sbjct: 79 NVVVKI 84 >gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]. Length = 856 Score = 30.3 bits (68), Expect = 2.4 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 80 KSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSE 132 K E+ C++ S + FF + I K + G N KD+++ Sbjct: 564 KGGYEADCTVSR-LSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTD 615 >gnl|CDD|133345 cd04145, M_R_Ras_like, M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 Score = 30.5 bits (69), Expect = 2.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 771 FHILRRQIYDRSSRPLIMMAPKSLLRHKRVVS 802 FH ++ DR P+I++ K+ L H+R VS Sbjct: 95 FHTQILRVKDRDEFPMILVGNKADLEHQRKVS 126 >gnl|CDD|35770 KOG0550, KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 486 Score = 30.1 bits (67), Expect = 2.8 Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 7/166 (4%) Query: 792 KSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDL 851 K H R + + A L D E + LK D+ + G Y Sbjct: 157 KLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-Y 215 Query: 852 LDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYL 911 DN D LR++ P+ K S + V + + + Y Sbjct: 216 NDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY- 269 Query: 912 EKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK 957 E ++ D S + +L V L + S +ALK Sbjct: 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 >gnl|CDD|30096 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.. Length = 321 Score = 30.3 bits (68), Expect = 3.0 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 16/100 (16%) Query: 780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVL-------SDDAEYHGKTSVKLK 832 +RSSR ++ + D G+V + L S+ A G + K Sbjct: 191 ERSSRS------HTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRK 243 Query: 833 EDSHIRRVILCTGKVYYDLLDNRDMRNIA--DIYLLRIEQ 870 E S I + +L G V L + ++ +I D L RI Q Sbjct: 244 EGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQ 283 >gnl|CDD|34786 COG5187, RPN7, 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]. Length = 412 Score = 29.6 bits (66), Expect = 4.0 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 520 QELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERKNSVSKEILK----KIGSSII 575 +E + N + EA+ +E YC ++ + NG + + + + I Sbjct: 103 REKEED-NGETEGSEADRNIAEYYC--QIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKI 159 Query: 576 RLPKSFNTHKIVERLMANRQKMIETGKGIDW 606 RL + K+VE + +IE KG DW Sbjct: 160 RLGLIYGDRKVVEESLEVADDIIE--KGGDW 188 >gnl|CDD|80364 cd04821, PA_M28_1_2, PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup.. Length = 157 Score = 29.5 bits (66), Expect = 5.0 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 374 IIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSS---ARSCTY 427 + F G GIV+ +G G V G +I+ N GF T S ++ TY Sbjct: 21 LKDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTY 77 >gnl|CDD|39417 KOG4216, KOG4216, KOG4216, Steroid hormone nuclear receptor [Transcription]. Length = 479 Score = 28.9 bits (64), Expect = 7.5 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 3/82 (3%) Query: 173 YCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKY 232 YCS E V E D + I + + EE I + E E + + Sbjct: 221 YCSFTNGETSPTVSMAELDHLAQNIIKSHLETQYLLEELHQITWQTFDQEEIENY---QN 277 Query: 233 KGAKRFGADGSEVIIPAIEEII 254 KG + + + PAI+ ++ Sbjct: 278 KGREEMWELCAIKLTPAIQYVV 299 >gnl|CDD|58605 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).. Length = 229 Score = 28.6 bits (64), Expect = 9.4 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 428 ASDISKSIGIPIFHVNGDDPEAVIRVVR 455 A + + IPI NG P ++R ++ Sbjct: 193 ALTLCRRNKIPIIVFNGLKPGNLLRALK 220 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0723 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 11,622,261 Number of extensions: 632709 Number of successful extensions: 1456 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1408 Number of HSP's successfully gapped: 34 Length of query: 957 Length of database: 6,263,737 Length adjustment: 103 Effective length of query: 854 Effective length of database: 4,038,010 Effective search space: 3448460540 Effective search space used: 3448460540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (27.7 bits)