RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
(957 letters)
>gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 1431 bits (3706), Expect = 0.0
Identities = 480/965 (49%), Positives = 625/965 (64%), Gaps = 54/965 (5%)
Query: 3 QDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGI 62
K + SSFL G N YIE+LY+ Y +DP SV ++W F D L
Sbjct: 2 NSAMKAWLDSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFF----------DGLPGVA 51
Query: 63 ASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLG 122
S K + V S+ S + +V+++I+AYR GH AN+DPLG
Sbjct: 52 PDVAHSAVRESFRRLAKPARVSSAVSDPQ-------VKVLQLINAYRFRGHLAANLDPLG 104
Query: 123 YNSHQKDLSELSPAHYGFVKADYDRKICMKG-VLGLESATIPEIVDVLSHLYCSNIGVEF 181
+ D+ EL PA YG +AD DR LG E+AT+ EI++ L YC +IGVE+
Sbjct: 105 LW-KRPDVPELDPAFYGLTEADLDRTFNTGSLALGKETATLREIIEALKKTYCGSIGVEY 163
Query: 182 MHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGAD 241
MHI D ER W++ IE S FS EE++ IL++L AEGFE+F+ K+ G KRF +
Sbjct: 164 MHISDPEERRWLQQRIESGRPS--FSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLE 221
Query: 242 GSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGK-GPSE 300
G E +IP ++EIIR+ + GV E+++GMAHRGRLNVL ++ K PR +F EF+GK GP E
Sbjct: 222 GGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDE 281
Query: 301 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQD-LKAGIVGE 359
SGDVKYHLG +R+ G +V L L NPSHLE V+PVV GSVRARQD G
Sbjct: 282 VLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDG---- 337
Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP 419
+R +VLP++IHGDAAFAGQG+V+ET LS L GY G IH++INNQIGFTT+P
Sbjct: 338 -----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSP 392
Query: 420 SSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFG 479
RS Y +D++K + PIFHVNGDDPEAV+ R+A+ +R KF K VVID+VCYRR G
Sbjct: 393 PDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHG 452
Query: 480 HNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE 539
HNEGDEPSFTQP+MYK I+ H + +LYAD L+ VI+++E + N + L+A ++
Sbjct: 453 HNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEV 512
Query: 540 SESYCPEKL------GLL-HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMA 592
+ + P L H ++ V E LK++ + +P+ F H V++++
Sbjct: 513 VKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILE 572
Query: 593 NRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRY 652
+R++M E K IDW MAE+LAF SL EGY VRLSGQD RGTFSHRHA+L DQ+TG+ Y
Sbjct: 573 DRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETY 632
Query: 653 FPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQ 712
PL ++S+ Q EV +S LSE+AVLGFEYGYS N L IWEAQFGDFANGAQV++DQ
Sbjct: 633 IPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQ 692
Query: 713 FITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFH 772
FI++GEQKW S LV LLPHGYEGQGPEHSSARLERFLQ+CAE+NM V N T+PA YFH
Sbjct: 693 FISSGEQKWGRLSGLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFH 752
Query: 773 ILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLK 832
+LRRQ +PL++M PKSLLRH VSSL ++ GS FQ V+ D +
Sbjct: 753 LLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVIGD---------IDEL 802
Query: 833 EDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-EI 891
+ ++RV+LC+GKVYYDLL+ R R I D+ ++RIEQLYPFP + L L+++ A E+
Sbjct: 803 DPKKVKRVVLCSGKVYYDLLEARRKRGIDDVAIVRIEQLYPFPHEELAAELAKYPNAKEV 862
Query: 892 VWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSF 951
VWCQEEP+N GAW FI+ +LE+VL ++RY GR SAS AVG+MS H +Q +
Sbjct: 863 VWCQEEPKNQGAWYFIQHHLEEVLPEG----QKLRYAGRPASASPAVGYMSLHKKQQEAL 918
Query: 952 IEDAL 956
+EDAL
Sbjct: 919 VEDAL 923
>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 1085 bits (2809), Expect = 0.0
Identities = 408/865 (47%), Positives = 549/865 (63%), Gaps = 36/865 (4%)
Query: 101 VMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESA 160
VM++I AYR GH A+ DPL Y Q+ +L +G D DR+ + G G E
Sbjct: 389 VMELIHAYRVRGHLMADTDPLEY--RQRSHPDLDVLTHGLTLWDLDREFPVGGFGGKERM 446
Query: 161 TIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVR 220
+ +I+ VL YC +G+E+MHI D +R W++ +E ++EEQ+ IL KL
Sbjct: 447 KLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVER--PHEKPTREEQKRILSKLNA 504
Query: 221 AEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQ 280
AE FE F+ KY G KRF +G E +IP ++ ++ Q + G+DE+++GMAHRGRLNVL+
Sbjct: 505 AEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLAN 564
Query: 281 IMNKLPRSIFYEFKGK-GPSEKEYSGDVKYHLGLCCN-RQICGKDVKLLLQSNPSHLEFV 338
I+ K IF EF+G P + SGDVKYHLG Q+ G ++K+ L +NPSHLE V
Sbjct: 565 IVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAV 624
Query: 339 DPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSG 398
DPV+ G VRA+QD GE+ + VLP+++HGDAAFAGQG+V+ET LS L G
Sbjct: 625 DPVLEGIVRAKQDRLD--KGEEGFT------VLPILLHGDAAFAGQGVVAETLNLSQLRG 676
Query: 399 YTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAV 458
Y G IH+++NNQ+GFTT P S+RS YA+D++K I PIFHVNGDDPEAV+RV R+A
Sbjct: 677 YRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAF 736
Query: 459 SFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVIS 518
+R +FHK VVID+VCYRR GHNEGD+PS TQP+MY I + +SV +LY ++L+ I+
Sbjct: 737 EYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDIT 796
Query: 519 KQELQSLANNWHKYLE---AEYKESESYCPEKLG---LLHNGENERKNSVSKEILKKIGS 572
+E + ++ LE E +E+E PE +VS E+L++IG
Sbjct: 797 VEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGD 856
Query: 573 SIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCE 632
+ + LP+ F H ++ L+ R++M G GIDW+ E LAFGSL EG VRLSGQD
Sbjct: 857 AHVNLPEGFTVHPKLKPLLEKRREMAREG-GIDWAFGELLAFGSLLLEGTPVRLSGQDSR 915
Query: 633 RGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNAL 692
RGTFS RHA+L D+ETG+ Y PL N+S DQG V +S LSE A +GFEYGYS+ +AL
Sbjct: 916 RGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDAL 975
Query: 693 TIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQ 752
+WEAQFGDFANGAQ I+D+FI++GE KW S +V LLPHGYEGQGP+HSSAR+ERFLQ
Sbjct: 976 VLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQ 1035
Query: 753 MCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSV 812
+CAE NM VA ++PANYFH+LRRQ RPL++ PKS+LR K VS + D T G
Sbjct: 1036 LCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGK- 1094
Query: 813 FQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLY 872
F+ V+ D + + + +RRV+LC+GK+YYDL R+ D ++R+EQLY
Sbjct: 1095 FRPVIDDPT---------VDDGAKVRRVLLCSGKLYYDLAARREKDGRDDTAIVRVEQLY 1145
Query: 873 PFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRL 931
P P L + L+R+ A E+VW QEEP N GAW F+ L ++L D R+R V R
Sbjct: 1146 PLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELL----PDGRRLRRVSRP 1201
Query: 932 PSASTAVGHMSRHLEQLSSFIEDAL 956
SAS A G H + +++A
Sbjct: 1202 ASASPATGSAKVHAVEQQELLDEAF 1226
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 11 LSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFS 46
S F G N +E++Y+ Y DP+SV W F+
Sbjct: 1 SSEF--GQNEWLVEEMYQQYLADPNSVDPSWREFFA 34
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The E1 ortholog from Corynebacterium glutamicum is
unusual in having an N-terminal extension that resembles
the dihydrolipoamide succinyltransferase (E2) component
of 2-oxoglutarate dehydrogenase.
Length = 929
Score = 980 bits (2535), Expect = 0.0
Identities = 426/958 (44%), Positives = 571/958 (59%), Gaps = 44/958 (4%)
Query: 14 FLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVAS 73
+L G N YIE+LY+ Y DP SV W F L D S+ + +
Sbjct: 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLA--- 57
Query: 74 AVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSEL 133
K A S ++ + + +V+++I AYR GH AN+DPLG Q + EL
Sbjct: 58 ------KDASRGSVTISDPDTNVSQVKVLQLIRAYRFRGHLHANLDPLG-LKQQDKVPEL 110
Query: 134 SPAHYGFVKADYDRKICM-KGVLGLESA---TIPEIVDVLSHLYCSNIGVEFMHIVDSIE 189
+ YG +AD + V G ++ + E++ L YC +IG E+MHI + E
Sbjct: 111 DLSFYGLTEADLQETFNIGSFVSGKDATMKLSNLELLQALKQTYCGSIGAEYMHITSTEE 170
Query: 190 RDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPA 249
+ W++ IE + + F+ EE++ L +L AEGFE+F+ K+ GAKRF +G + ++P
Sbjct: 171 KRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPM 229
Query: 250 IEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEK-EYSGDVK 308
++EIIR V G +++LGMAHRGRLNVL ++ K P IF EF GK S + +GDVK
Sbjct: 230 LKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVK 289
Query: 309 YHLGLCCNR-QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVER 367
YH+G + GK V L L NPSHLE V PVVIGS RAR D E
Sbjct: 290 YHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLN--------DSPES 341
Query: 368 SRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTY 427
++VL ++IHGDAAFAGQG+V ET +S L GY+V G IH+IINNQIGFTTNP ARS Y
Sbjct: 342 TKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY 401
Query: 428 ASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS 487
SD++K I PIFHVN DDPEAV R+AV +R F + V ID+V YRR GHNE DEPS
Sbjct: 402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPS 461
Query: 488 FTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE------AEYKESE 541
TQP+MY+ I+ H + ++YAD L+ V +++++ + N + LE ++E
Sbjct: 462 ATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMN 521
Query: 542 SYCPEKLGLL-HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIET 600
+ L H + E N V + L+++ I +P+ H V ++ +R K +
Sbjct: 522 TASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAA 581
Query: 601 GKG-IDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNIS 659
G+ DW AE+LAF +L +G VRLSG+D ERGTF RHA+L DQ G Y PL ++
Sbjct: 582 GEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLH 641
Query: 660 KDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQ 719
QG V NS LSE++VLGFEYGY+ + L IWEAQFGDFANGAQV++DQFI++GEQ
Sbjct: 642 NGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQ 701
Query: 720 KWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIY 779
KW S LV LLPHGYEGQGPEHSS RLERFLQ+ AE NM V T+PA FHILRRQ
Sbjct: 702 KWGQMSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQAL 761
Query: 780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRR 839
RPL++M+PKSLLRH VSSL ++ G+ FQ V+ + S+ + ++R
Sbjct: 762 RGMRRPLVVMSPKSLLRHPLAVSSLEELAEGT-FQPVIGEIE--ESGLSLDPEG---VKR 815
Query: 840 VILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQ-AEIVWCQEEP 898
++LC+GKVYYDL + R D+ ++RIEQLYPFP + +VL ++ EIVWCQEEP
Sbjct: 816 LVLCSGKVYYDLHEQRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEP 875
Query: 899 QNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956
NMGAW + +P+ L + + VRY GR SAS AVG+MS H +Q + DAL
Sbjct: 876 LNMGAWYYSQPH----LREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDLLNDAL 929
>gnl|CDD|129094 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 168
Score = 129 bits (328), Expect = 3e-30
Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 27/192 (14%)
Query: 605 DWSMAESLAFGSLC-YEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQG 663
A A L + +V +SG D T R + D K G
Sbjct: 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDT-------------KGLG 47
Query: 664 HCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLC 723
V+++ ++EQA++GF G +L L A F F + A+ + G +
Sbjct: 48 PGRVIDTGIAEQAMVGFAAGLALA---GLRPVVAIFFTFFDRAKDQIRSDGAMGRVPVV- 103
Query: 724 TSNLVCLLPHGYEGQ-GPEHSSARLE-RFLQMCAENNMYVANCTSPANYFHILRRQIYDR 781
V G G+ GP H S E + + V + PA +LR I
Sbjct: 104 ----VRHDSGGGVGEDGPTHHSQEDEALLRAIP---GLKVVAPSDPAEAKGLLRAAIRRD 156
Query: 782 SSRPLIMMAPKS 793
P+I + KS
Sbjct: 157 DGPPVIRLERKS 168
>gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc.
Length = 315
Score = 53.7 bits (130), Expect = 2e-07
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISK--- 433
GD A A QG E+F ++ L V I +I NN T S RS + +D+ K
Sbjct: 140 GDGA-ANQGQFYESFNMAALWKLPV---IFVIENNLYAMGT--SVERS-SSVTDLYKRGE 192
Query: 434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMM 493
S GIP V+G D AV + AV +++++ YR GH S + P
Sbjct: 193 SFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH------SMSDPAK 246
Query: 494 YKT------IRSHKSVLQLYADSLMKNQVISKQELQSL 525
Y++ R + +L L++ + S++EL+ +
Sbjct: 247 YRSKEEVEEWRKRDPIEKL-KARLIEQGIASEEELKEI 283
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 40.0 bits (94), Expect = 0.003
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 667 VVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFI-TAGEQKWLCTS 725
V ++ ++EQ GF G ++N L I E F DF A DQ + A + +++
Sbjct: 84 VFDTPITEQGFAGFAIGAAMNGLRP--IAEFMFADFIFPA---FDQIVNEAAKYRYMSGG 138
Query: 726 NLVCLL----PHGYEGQ-GPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780
C + P+G G G HS E + + V + P + +L+ I D
Sbjct: 139 QFDCPIVIRGPNGAVGHGGAYHSQ-SFEAYFAHVP--GLKVVAPSDPEDAKGLLKAAIRD 195
Query: 781 RSSRPLIMMAPKSLLRHKRVVSSLSDMT 808
+ P++ PK L R V +D T
Sbjct: 196 PN--PVVFFEPKLLYRESVEVVPEADYT 221
>gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 31.7 bits (72), Expect = 0.98
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 46 SFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMI 105
+LD+ ++ L+ L+ ++ +A FS K+ + S Q +KD + +K I
Sbjct: 600 QWLDDTEQKLLGLKASATRKLEVQTSPTATFSPSKAGFLADKS--REQYIKDVQKCLKYI 657
Query: 106 DAYRSYG--------HFKANIDPLGYNSHQKDLSELSPAHY 138
SY ID LG H L E +PA Y
Sbjct: 658 KDGESYELCLTTQMRKRIGEIDSLGLYLH---LREKNPAPY 695
>gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc.
Length = 341
Score = 31.3 bits (72), Expect = 1.2
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 407 LIINNQIGFTTNPSSARSCTYASDIS-KSI--GIPIFHVNGDDPEAVIRVVRMAVSFRMK 463
+ NNQ + P S + T A ++ K+I GIP V+G+D AV V + AV
Sbjct: 178 FVQNNQWAISV-PRSKQ--TAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARS 234
Query: 464 FHKSVVIDIVCYRRFGHNEGDEPS 487
+I+ V YR H D+P+
Sbjct: 235 GGGPTLIEAVTYRLGPHTTADDPT 258
>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 363
Score = 31.3 bits (71), Expect = 1.3
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 391 FGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNG 444
G G+ T+A + +N Q G T+NP R C +I K + + + ++
Sbjct: 44 SGTRGVGKTTIARLLAKSLNCQNGITSNP--CRKCIICKEIEKGLCLDLIEIDA 95
>gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional.
Length = 236
Score = 29.9 bits (68), Expect = 3.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 414 GFTTNPSSARSC------TYASDISKSI-GIPI-FHVNGDDPEAVIR 452
GFTTNPS R +A ++ I PI F V DD E + +
Sbjct: 29 GFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVFADDLETMEK 75
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase.
This model represents HemN, the oxygen-independent
coproporphyrinogen III oxidase that replaces HemF
function under anaerobic conditions. Several species,
including E. coli, Helicobacter pylori, and Aquifex
aeolicus, have both a member of this family and a member
of another, closely related family for which there is no
evidence of coproporphyrinogen III oxidase activity.
Members of this family have a perfectly conserved motif
PYRT[SC]YP in a region N-terminal to the region of
homology with the related uncharacterized protein.
Length = 455
Score = 29.8 bits (67), Expect = 3.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 829 VKLKEDSHIRR-VI---LCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLS 884
+ L +D IRR VI +C K+ Y ++ + + AD + +E L P ED L+ V
Sbjct: 359 IALSQDDCIRREVIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDE 418
Query: 885 RFVQ 888
+ ++
Sbjct: 419 KGIE 422
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 29.6 bits (66), Expect = 4.1
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 839 RVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEP 898
+VILC V+ + + + I + + RI PFP++ L + + Q+ +V E
Sbjct: 123 KVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK-KQSNLVVKVSES 181
Query: 899 QNMGAWTFIE 908
+ + W +E
Sbjct: 182 ETIHLWNSVE 191
>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 29.1 bits (65), Expect = 5.2
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP-- 491
+ G+P HV+G D V V + A+ + +++ YR GH+ D P
Sbjct: 284 AFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE 343
Query: 492 MMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK-ESESYCPEKLGL 550
+ R + L+ Y L++N + ++ EL+++ + +E + S P + L
Sbjct: 344 KAHYAARDPIAALKKY---LIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQL 400
Query: 551 LHN 553
L N
Sbjct: 401 LEN 403
>gnl|CDD|165263 PHA02954, PHA02954, EEV membrane glycoprotein; Provisional.
Length = 317
Score = 28.9 bits (64), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 34 PSSVCKD--WYPLFSFLDENSEEYDNLEDG 61
PSS C D W P+ ++EE+D ++DG
Sbjct: 221 PSSTCIDGKWNPVLPICVRSNEEFDPVDDG 250
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 29.0 bits (64), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 831 LKEDSHIRRVILCTGKVYYDLLD---NRDMRNIADIYLLRIEQLYPF 874
+++DS I ++YD+L N DM+ I++ Y E YP
Sbjct: 558 VQQDSEAAPTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPP 604
>gnl|CDD|151058 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialized organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 28.9 bits (65), Expect = 6.2
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 498 RSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEA-EYKES------ESYCPEKLGL 550
RSH + ++ K+ +KQ L+ L+ + K LE +E E E
Sbjct: 215 RSHLEQMHQLKKAISKSLPETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREA 274
Query: 551 L--HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGI 604
+ E+ N S+ + + ++I E L +Q+M E G +
Sbjct: 275 RRTLSQVQEKYNQASQGVSELTRE----------LNEISEELEQVKQEMEERGASM 320
>gnl|CDD|163422 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha
subunit. The genes for this enzyme in Prevotella
intermedia 17, Persephonella marina EX-H1 and
Picrophilus torridus DSM 9790 are in close proximity to
a variety of TCA cycle genes. Persephonella marina and
P. torridus are believed to encode complete TCA cycles,
and none of these contains the lipoate-based
2-oxoglutarate dehydrogenase (E1/E2/E3) system. That
system is presumed to be replaced by this one. In fact,
the lipoate system is absent in most organisms
possessing a member of this family, providing additional
circumstantial evidence that many of these enzymes are
capable of acting as 2-oxoglutarate dehydrogenases and
supporting flux through TCA cycles in either the forward
or reverse directions.
Length = 562
Score = 28.6 bits (65), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIV 892
LL + LYPFP+D L ++L + +V
Sbjct: 494 LLHLRLLYPFPKDELAELLEGAKKVIVV 521
>gnl|CDD|177962 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.8 bits (64), Expect = 6.9
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 576 RLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESL 612
++ SFN K+++R+ RQ MIE K +D ++ +L
Sbjct: 341 KIEASFN--KLLDRVCKLRQAMIEEVKSVDVNLGTAL 375
>gnl|CDD|128867 smart00604, MD, MD domain.
Length = 145
Score = 28.7 bits (64), Expect = 8.5
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%)
Query: 414 GFTTNPSSARSCTYASDI--SKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVID 471
GFTT+ + R Y + S + + ++H G D E I+ A+
Sbjct: 36 GFTTDIQNDRPSHYPNKFANSTTNSLIVYHAGGLDNENAIQ----AILTE-----YATNH 86
Query: 472 IVCYRRFGHNEGDEPSFTQPMMYKTI 497
R T + + +
Sbjct: 87 Y--SNRTPMETR---FCTYAPVLERL 107
>gnl|CDD|181526 PRK08659, PRK08659, 2-oxoglutarate ferredoxin oxidoreductase
subunit alpha; Validated.
Length = 376
Score = 28.3 bits (64), Expect = 8.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQ-NMG 902
L R+ ++PFPE+ I+ L++ V+A +V P+ N+G
Sbjct: 304 LFRLITVWPFPEE-AIRELAKKVKAIVV-----PEMNLG 336
>gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.
Length = 665
Score = 28.6 bits (65), Expect = 8.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 846 KVYYDLLDNRDMRNIADIYLLRIEQL 871
K+ L + + + AD++ L E L
Sbjct: 456 KIIEQLFEKGLIHDPADLFKLTAEDL 481
>gnl|CDD|181932 PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase
complex subunit alpha/beta; Reviewed.
Length = 711
Score = 28.4 bits (64), Expect = 9.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 208 KEEQRDILDKLVRAEGFEKFID-IKYKGAKRFGADGSEVIIPAIEEII 254
KEE +D L+ + EG F D I AD E + EEI+
Sbjct: 658 KEELKDRLNARAKEEGLPDFYDKI---------AD--ETVGTTEEEIL 694
>gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family. Members
of this protein family, previously called conserved
hypothetical protein TIGR00046, include the YggJ protein
of E. coli, which has now been shown to methylate U1498
in 16S rRNA.
Length = 240
Score = 28.1 bits (63), Expect = 10.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 250 IEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPR 287
+E IIR+ + GV ++I A R + + + + KL R
Sbjct: 90 MEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLER 127
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 15,577,545
Number of extensions: 1028732
Number of successful extensions: 1988
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1952
Number of HSP's successfully gapped: 37
Length of query: 957
Length of database: 5,994,473
Length adjustment: 103
Effective length of query: 854
Effective length of database: 3,768,849
Effective search space: 3218597046
Effective search space used: 3218597046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)