RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (957 letters) >gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed. Length = 924 Score = 1431 bits (3706), Expect = 0.0 Identities = 480/965 (49%), Positives = 625/965 (64%), Gaps = 54/965 (5%) Query: 3 QDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGI 62 K + SSFL G N YIE+LY+ Y +DP SV ++W F D L Sbjct: 2 NSAMKAWLDSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFF----------DGLPGVA 51 Query: 63 ASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLG 122 S K + V S+ S + +V+++I+AYR GH AN+DPLG Sbjct: 52 PDVAHSAVRESFRRLAKPARVSSAVSDPQ-------VKVLQLINAYRFRGHLAANLDPLG 104 Query: 123 YNSHQKDLSELSPAHYGFVKADYDRKICMKG-VLGLESATIPEIVDVLSHLYCSNIGVEF 181 + D+ EL PA YG +AD DR LG E+AT+ EI++ L YC +IGVE+ Sbjct: 105 LW-KRPDVPELDPAFYGLTEADLDRTFNTGSLALGKETATLREIIEALKKTYCGSIGVEY 163 Query: 182 MHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGAD 241 MHI D ER W++ IE S FS EE++ IL++L AEGFE+F+ K+ G KRF + Sbjct: 164 MHISDPEERRWLQQRIESGRPS--FSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLE 221 Query: 242 GSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGK-GPSE 300 G E +IP ++EIIR+ + GV E+++GMAHRGRLNVL ++ K PR +F EF+GK GP E Sbjct: 222 GGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDE 281 Query: 301 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQD-LKAGIVGE 359 SGDVKYHLG +R+ G +V L L NPSHLE V+PVV GSVRARQD G Sbjct: 282 VLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDG---- 337 Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNP 419 +R +VLP++IHGDAAFAGQG+V+ET LS L GY G IH++INNQIGFTT+P Sbjct: 338 -----QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSP 392 Query: 420 SSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFG 479 RS Y +D++K + PIFHVNGDDPEAV+ R+A+ +R KF K VVID+VCYRR G Sbjct: 393 PDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHG 452 Query: 480 HNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKE 539 HNEGDEPSFTQP+MYK I+ H + +LYAD L+ VI+++E + N + L+A ++ Sbjct: 453 HNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEV 512 Query: 540 SESYCPEKL------GLL-HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMA 592 + + P L H ++ V E LK++ + +P+ F H V++++ Sbjct: 513 VKEWRPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILE 572 Query: 593 NRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRY 652 +R++M E K IDW MAE+LAF SL EGY VRLSGQD RGTFSHRHA+L DQ+TG+ Y Sbjct: 573 DRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETY 632 Query: 653 FPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQ 712 PL ++S+ Q EV +S LSE+AVLGFEYGYS N L IWEAQFGDFANGAQV++DQ Sbjct: 633 IPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQ 692 Query: 713 FITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFH 772 FI++GEQKW S LV LLPHGYEGQGPEHSSARLERFLQ+CAE+NM V N T+PA YFH Sbjct: 693 FISSGEQKWGRLSGLVMLLPHGYEGQGPEHSSARLERFLQLCAEDNMQVCNPTTPAQYFH 752 Query: 773 ILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLK 832 +LRRQ +PL++M PKSLLRH VSSL ++ GS FQ V+ D + Sbjct: 753 LLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGS-FQPVIGD---------IDEL 802 Query: 833 EDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-EI 891 + ++RV+LC+GKVYYDLL+ R R I D+ ++RIEQLYPFP + L L+++ A E+ Sbjct: 803 DPKKVKRVVLCSGKVYYDLLEARRKRGIDDVAIVRIEQLYPFPHEELAAELAKYPNAKEV 862 Query: 892 VWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSF 951 VWCQEEP+N GAW FI+ +LE+VL ++RY GR SAS AVG+MS H +Q + Sbjct: 863 VWCQEEPKNQGAWYFIQHHLEEVLPEG----QKLRYAGRPASASPAVGYMSLHKKQQEAL 918 Query: 952 IEDAL 956 +EDAL Sbjct: 919 VEDAL 923 >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed. Length = 1228 Score = 1085 bits (2809), Expect = 0.0 Identities = 408/865 (47%), Positives = 549/865 (63%), Gaps = 36/865 (4%) Query: 101 VMKMIDAYRSYGHFKANIDPLGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESA 160 VM++I AYR GH A+ DPL Y Q+ +L +G D DR+ + G G E Sbjct: 389 VMELIHAYRVRGHLMADTDPLEY--RQRSHPDLDVLTHGLTLWDLDREFPVGGFGGKERM 446 Query: 161 TIPEIVDVLSHLYCSNIGVEFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVR 220 + +I+ VL YC +G+E+MHI D +R W++ +E ++EEQ+ IL KL Sbjct: 447 KLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWLQERVER--PHEKPTREEQKRILSKLNA 504 Query: 221 AEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQ 280 AE FE F+ KY G KRF +G E +IP ++ ++ Q + G+DE+++GMAHRGRLNVL+ Sbjct: 505 AEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLAN 564 Query: 281 IMNKLPRSIFYEFKGK-GPSEKEYSGDVKYHLGLCCN-RQICGKDVKLLLQSNPSHLEFV 338 I+ K IF EF+G P + SGDVKYHLG Q+ G ++K+ L +NPSHLE V Sbjct: 565 IVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAV 624 Query: 339 DPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSG 398 DPV+ G VRA+QD GE+ + VLP+++HGDAAFAGQG+V+ET LS L G Sbjct: 625 DPVLEGIVRAKQDRLD--KGEEGFT------VLPILLHGDAAFAGQGVVAETLNLSQLRG 676 Query: 399 YTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAV 458 Y G IH+++NNQ+GFTT P S+RS YA+D++K I PIFHVNGDDPEAV+RV R+A Sbjct: 677 YRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAF 736 Query: 459 SFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVIS 518 +R +FHK VVID+VCYRR GHNEGD+PS TQP+MY I + +SV +LY ++L+ I+ Sbjct: 737 EYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDIT 796 Query: 519 KQELQSLANNWHKYLE---AEYKESESYCPEKLG---LLHNGENERKNSVSKEILKKIGS 572 +E + ++ LE E +E+E PE +VS E+L++IG Sbjct: 797 VEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGD 856 Query: 573 SIIRLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCE 632 + + LP+ F H ++ L+ R++M G GIDW+ E LAFGSL EG VRLSGQD Sbjct: 857 AHVNLPEGFTVHPKLKPLLEKRREMAREG-GIDWAFGELLAFGSLLLEGTPVRLSGQDSR 915 Query: 633 RGTFSHRHAILCDQETGKRYFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNAL 692 RGTFS RHA+L D+ETG+ Y PL N+S DQG V +S LSE A +GFEYGYS+ +AL Sbjct: 916 RGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDAL 975 Query: 693 TIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQ 752 +WEAQFGDFANGAQ I+D+FI++GE KW S +V LLPHGYEGQGP+HSSAR+ERFLQ Sbjct: 976 VLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSSARIERFLQ 1035 Query: 753 MCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSV 812 +CAE NM VA ++PANYFH+LRRQ RPL++ PKS+LR K VS + D T G Sbjct: 1036 LCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGK- 1094 Query: 813 FQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLY 872 F+ V+ D + + + +RRV+LC+GK+YYDL R+ D ++R+EQLY Sbjct: 1095 FRPVIDDPT---------VDDGAKVRRVLLCSGKLYYDLAARREKDGRDDTAIVRVEQLY 1145 Query: 873 PFPEDYLIKVLSRFVQA-EIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRL 931 P P L + L+R+ A E+VW QEEP N GAW F+ L ++L D R+R V R Sbjct: 1146 PLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPELL----PDGRRLRRVSRP 1201 Query: 932 PSASTAVGHMSRHLEQLSSFIEDAL 956 SAS A G H + +++A Sbjct: 1202 ASASPATGSAKVHAVEQQELLDEAF 1226 Score = 39.5 bits (93), Expect = 0.004 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 11 LSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFS 46 S F G N +E++Y+ Y DP+SV W F+ Sbjct: 1 SSEF--GQNEWLVEEMYQQYLADPNSVDPSWREFFA 34 >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. Length = 929 Score = 980 bits (2535), Expect = 0.0 Identities = 426/958 (44%), Positives = 571/958 (59%), Gaps = 44/958 (4%) Query: 14 FLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLEDGIASFLKEESVAS 73 +L G N YIE+LY+ Y DP SV W F L D S+ + + Sbjct: 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLA--- 57 Query: 74 AVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSEL 133 K A S ++ + + +V+++I AYR GH AN+DPLG Q + EL Sbjct: 58 ------KDASRGSVTISDPDTNVSQVKVLQLIRAYRFRGHLHANLDPLG-LKQQDKVPEL 110 Query: 134 SPAHYGFVKADYDRKICM-KGVLGLESA---TIPEIVDVLSHLYCSNIGVEFMHIVDSIE 189 + YG +AD + V G ++ + E++ L YC +IG E+MHI + E Sbjct: 111 DLSFYGLTEADLQETFNIGSFVSGKDATMKLSNLELLQALKQTYCGSIGAEYMHITSTEE 170 Query: 190 RDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPA 249 + W++ IE + + F+ EE++ L +L AEGFE+F+ K+ GAKRF +G + ++P Sbjct: 171 KRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPM 229 Query: 250 IEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEK-EYSGDVK 308 ++EIIR V G +++LGMAHRGRLNVL ++ K P IF EF GK S + +GDVK Sbjct: 230 LKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVK 289 Query: 309 YHLGLCCNR-QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVER 367 YH+G + GK V L L NPSHLE V PVVIGS RAR D E Sbjct: 290 YHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLN--------DSPES 341 Query: 368 SRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTY 427 ++VL ++IHGDAAFAGQG+V ET +S L GY+V G IH+IINNQIGFTTNP ARS Y Sbjct: 342 TKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY 401 Query: 428 ASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPS 487 SD++K I PIFHVN DDPEAV R+AV +R F + V ID+V YRR GHNE DEPS Sbjct: 402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPS 461 Query: 488 FTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE------AEYKESE 541 TQP+MY+ I+ H + ++YAD L+ V +++++ + N + LE ++E Sbjct: 462 ATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMN 521 Query: 542 SYCPEKLGLL-HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIET 600 + L H + E N V + L+++ I +P+ H V ++ +R K + Sbjct: 522 TASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAA 581 Query: 601 GKG-IDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNIS 659 G+ DW AE+LAF +L +G VRLSG+D ERGTF RHA+L DQ G Y PL ++ Sbjct: 582 GEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLH 641 Query: 660 KDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQ 719 QG V NS LSE++VLGFEYGY+ + L IWEAQFGDFANGAQV++DQFI++GEQ Sbjct: 642 NGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQ 701 Query: 720 KWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIY 779 KW S LV LLPHGYEGQGPEHSS RLERFLQ+ AE NM V T+PA FHILRRQ Sbjct: 702 KWGQMSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQVCVPTTPAQVFHILRRQAL 761 Query: 780 DRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRR 839 RPL++M+PKSLLRH VSSL ++ G+ FQ V+ + S+ + ++R Sbjct: 762 RGMRRPLVVMSPKSLLRHPLAVSSLEELAEGT-FQPVIGEIE--ESGLSLDPEG---VKR 815 Query: 840 VILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQ-AEIVWCQEEP 898 ++LC+GKVYYDL + R D+ ++RIEQLYPFP + +VL ++ EIVWCQEEP Sbjct: 816 LVLCSGKVYYDLHEQRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEP 875 Query: 899 QNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDAL 956 NMGAW + +P+ L + + VRY GR SAS AVG+MS H +Q + DAL Sbjct: 876 LNMGAWYYSQPH----LREVIPEGVSVRYAGRPASASPAVGYMSLHQKQQQDLLNDAL 929 >gnl|CDD|129094 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 168 Score = 129 bits (328), Expect = 3e-30 Identities = 44/192 (22%), Positives = 67/192 (34%), Gaps = 27/192 (14%) Query: 605 DWSMAESLAFGSLC-YEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISKDQG 663 A A L + +V +SG D T R + D K G Sbjct: 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDT-------------KGLG 47 Query: 664 HCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLC 723 V+++ ++EQA++GF G +L L A F F + A+ + G + Sbjct: 48 PGRVIDTGIAEQAMVGFAAGLALA---GLRPVVAIFFTFFDRAKDQIRSDGAMGRVPVV- 103 Query: 724 TSNLVCLLPHGYEGQ-GPEHSSARLE-RFLQMCAENNMYVANCTSPANYFHILRRQIYDR 781 V G G+ GP H S E + + V + PA +LR I Sbjct: 104 ----VRHDSGGGVGEDGPTHHSQEDEALLRAIP---GLKVVAPSDPAEAKGLLRAAIRRD 156 Query: 782 SSRPLIMMAPKS 793 P+I + KS Sbjct: 157 DGPPVIRLERKS 168 >gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 315 Score = 53.7 bits (130), Expect = 2e-07 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 23/158 (14%) Query: 377 GDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISK--- 433 GD A A QG E+F ++ L V I +I NN T S RS + +D+ K Sbjct: 140 GDGA-ANQGQFYESFNMAALWKLPV---IFVIENNLYAMGT--SVERS-SSVTDLYKRGE 192 Query: 434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMM 493 S GIP V+G D AV + AV +++++ YR GH S + P Sbjct: 193 SFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH------SMSDPAK 246 Query: 494 YKT------IRSHKSVLQLYADSLMKNQVISKQELQSL 525 Y++ R + +L L++ + S++EL+ + Sbjct: 247 YRSKEEVEEWRKRDPIEKL-KARLIEQGIASEEELKEI 283 >gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional. Length = 355 Score = 40.0 bits (94), Expect = 0.003 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 16/148 (10%) Query: 667 VVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFI-TAGEQKWLCTS 725 V ++ ++EQ GF G ++N L I E F DF A DQ + A + +++ Sbjct: 84 VFDTPITEQGFAGFAIGAAMNGLRP--IAEFMFADFIFPA---FDQIVNEAAKYRYMSGG 138 Query: 726 NLVCLL----PHGYEGQ-GPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780 C + P+G G G HS E + + V + P + +L+ I D Sbjct: 139 QFDCPIVIRGPNGAVGHGGAYHSQ-SFEAYFAHVP--GLKVVAPSDPEDAKGLLKAAIRD 195 Query: 781 RSSRPLIMMAPKSLLRHKRVVSSLSDMT 808 + P++ PK L R V +D T Sbjct: 196 PN--PVVFFEPKLLYRESVEVVPEADYT 221 >gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase. Length = 918 Score = 31.7 bits (72), Expect = 0.98 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 13/101 (12%) Query: 46 SFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMI 105 +LD+ ++ L+ L+ ++ +A FS K+ + S Q +KD + +K I Sbjct: 600 QWLDDTEQKLLGLKASATRKLEVQTSPTATFSPSKAGFLADKS--REQYIKDVQKCLKYI 657 Query: 106 DAYRSYG--------HFKANIDPLGYNSHQKDLSELSPAHY 138 SY ID LG H L E +PA Y Sbjct: 658 KDGESYELCLTTQMRKRIGEIDSLGLYLH---LREKNPAPY 695 >gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 341 Score = 31.3 bits (72), Expect = 1.2 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%) Query: 407 LIINNQIGFTTNPSSARSCTYASDIS-KSI--GIPIFHVNGDDPEAVIRVVRMAVSFRMK 463 + NNQ + P S + T A ++ K+I GIP V+G+D AV V + AV Sbjct: 178 FVQNNQWAISV-PRSKQ--TAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARS 234 Query: 464 FHKSVVIDIVCYRRFGHNEGDEPS 487 +I+ V YR H D+P+ Sbjct: 235 GGGPTLIEAVTYRLGPHTTADDPT 258 >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional. Length = 363 Score = 31.3 bits (71), Expect = 1.3 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 391 FGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNG 444 G G+ T+A + +N Q G T+NP R C +I K + + + ++ Sbjct: 44 SGTRGVGKTTIARLLAKSLNCQNGITSNP--CRKCIICKEIEKGLCLDLIEIDA 95 >gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional. Length = 236 Score = 29.9 bits (68), Expect = 3.7 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%) Query: 414 GFTTNPSSARSC------TYASDISKSI-GIPI-FHVNGDDPEAVIR 452 GFTTNPS R +A ++ I PI F V DD E + + Sbjct: 29 GFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVFADDLETMEK 75 >gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. Length = 455 Score = 29.8 bits (67), Expect = 3.7 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 829 VKLKEDSHIRR-VI---LCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLS 884 + L +D IRR VI +C K+ Y ++ + + AD + +E L P ED L+ V Sbjct: 359 IALSQDDCIRREVIKSLMCNFKLDYSKIEEKFDLDFADYFAKELELLKPLEEDGLLDVDE 418 Query: 885 RFVQ 888 + ++ Sbjct: 419 KGIE 422 >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated. Length = 563 Score = 29.6 bits (66), Expect = 4.1 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 839 RVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEP 898 +VILC V+ + + + I + + RI PFP++ L + + Q+ +V E Sbjct: 123 KVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK-KQSNLVVKVSES 181 Query: 899 QNMGAWTFIE 908 + + W +E Sbjct: 182 ETIHLWNSVE 191 >gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring). Length = 433 Score = 29.1 bits (65), Expect = 5.2 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 434 SIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQP-- 491 + G+P HV+G D V V + A+ + +++ YR GH+ D P Sbjct: 284 AFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE 343 Query: 492 MMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK-ESESYCPEKLGL 550 + R + L+ Y L++N + ++ EL+++ + +E + S P + L Sbjct: 344 KAHYAARDPIAALKKY---LIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQL 400 Query: 551 LHN 553 L N Sbjct: 401 LEN 403 >gnl|CDD|165263 PHA02954, PHA02954, EEV membrane glycoprotein; Provisional. Length = 317 Score = 28.9 bits (64), Expect = 5.8 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Query: 34 PSSVCKD--WYPLFSFLDENSEEYDNLEDG 61 PSS C D W P+ ++EE+D ++DG Sbjct: 221 PSSTCIDGKWNPVLPICVRSNEEFDPVDDG 250 >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional. Length = 1136 Score = 29.0 bits (64), Expect = 6.0 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Query: 831 LKEDSHIRRVILCTGKVYYDLLD---NRDMRNIADIYLLRIEQLYPF 874 +++DS I ++YD+L N DM+ I++ Y E YP Sbjct: 558 VQQDSEAAPTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPP 604 >gnl|CDD|151058 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic cilia and flagella are specialized organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bidirectional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated. This protein is known as Huntington-interacting protein-1 in humans. Length = 355 Score = 28.9 bits (65), Expect = 6.2 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 19/116 (16%) Query: 498 RSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEA-EYKES------ESYCPEKLGL 550 RSH + ++ K+ +KQ L+ L+ + K LE +E E E Sbjct: 215 RSHLEQMHQLKKAISKSLPETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREA 274 Query: 551 L--HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIETGKGI 604 + E+ N S+ + + ++I E L +Q+M E G + Sbjct: 275 RRTLSQVQEKYNQASQGVSELTRE----------LNEISEELEQVKQEMEERGASM 320 >gnl|CDD|163422 TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions. Length = 562 Score = 28.6 bits (65), Expect = 6.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIV 892 LL + LYPFP+D L ++L + +V Sbjct: 494 LLHLRLLYPFPKDELAELLEGAKKVIVV 521 >gnl|CDD|177962 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog. Length = 808 Score = 28.8 bits (64), Expect = 6.9 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Query: 576 RLPKSFNTHKIVERLMANRQKMIETGKGIDWSMAESL 612 ++ SFN K+++R+ RQ MIE K +D ++ +L Sbjct: 341 KIEASFN--KLLDRVCKLRQAMIEEVKSVDVNLGTAL 375 >gnl|CDD|128867 smart00604, MD, MD domain. Length = 145 Score = 28.7 bits (64), Expect = 8.5 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%) Query: 414 GFTTNPSSARSCTYASDI--SKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVID 471 GFTT+ + R Y + S + + ++H G D E I+ A+ Sbjct: 36 GFTTDIQNDRPSHYPNKFANSTTNSLIVYHAGGLDNENAIQ----AILTE-----YATNH 86 Query: 472 IVCYRRFGHNEGDEPSFTQPMMYKTI 497 R T + + + Sbjct: 87 Y--SNRTPMETR---FCTYAPVLERL 107 >gnl|CDD|181526 PRK08659, PRK08659, 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated. Length = 376 Score = 28.3 bits (64), Expect = 8.7 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 7/39 (17%) Query: 865 LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQ-NMG 902 L R+ ++PFPE+ I+ L++ V+A +V P+ N+G Sbjct: 304 LFRLITVWPFPEE-AIRELAKKVKAIVV-----PEMNLG 336 >gnl|CDD|181181 PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated. Length = 665 Score = 28.6 bits (65), Expect = 8.9 Identities = 7/26 (26%), Positives = 13/26 (50%) Query: 846 KVYYDLLDNRDMRNIADIYLLRIEQL 871 K+ L + + + AD++ L E L Sbjct: 456 KIIEQLFEKGLIHDPADLFKLTAEDL 481 >gnl|CDD|181932 PRK09529, PRK09529, bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed. Length = 711 Score = 28.4 bits (64), Expect = 9.4 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 12/48 (25%) Query: 208 KEEQRDILDKLVRAEGFEKFID-IKYKGAKRFGADGSEVIIPAIEEII 254 KEE +D L+ + EG F D I AD E + EEI+ Sbjct: 658 KEELKDRLNARAKEEGLPDFYDKI---------AD--ETVGTTEEEIL 694 >gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. Length = 240 Score = 28.1 bits (63), Expect = 10.0 Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 250 IEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPR 287 +E IIR+ + GV ++I A R + + + + KL R Sbjct: 90 MEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLER 127 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0819 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 15,577,545 Number of extensions: 1028732 Number of successful extensions: 1988 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1952 Number of HSP's successfully gapped: 37 Length of query: 957 Length of database: 5,994,473 Length adjustment: 103 Effective length of query: 854 Effective length of database: 3,768,849 Effective search space: 3218597046 Effective search space used: 3218597046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 62 (27.5 bits)