RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (957 letters) >2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Length = 933 Score = 983 bits (2542), Expect = 0.0 Identities = 410/966 (42%), Positives = 566/966 (58%), Gaps = 46/966 (4%) Query: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60 M K + SS+L G N +IE LY+ + DP SV +W F L + D Sbjct: 1 MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS 60 Query: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120 + + + K A S ++ + + +V+++I+AYR GH AN+DP Sbjct: 61 QTREYFRRLA---------KDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDP 111 Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLESATIPEIVDVLSHLYCSNIGV 179 LG Q +++L P+ + +AD+ + G E+ + E+++ L YC IG Sbjct: 112 LGL-WQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGA 170 Query: 180 EFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239 E+MHI + E+ W++ IE + F+ EE++ L +L AEG E+++ K+ GAKRF Sbjct: 171 EYMHITSTEEKRWIQQRIES--GRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228 Query: 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPS 299 +G + +IP ++E+IR G E++LGMAHRGRLNVL ++ K P+ +F EF GK Sbjct: 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGK-HK 287 Query: 300 EKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGE 359 E +GDVKYH+G + Q G V L L NPSHLE V PVVIGSVRAR D + E Sbjct: 288 EHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLD----RLDE 343 Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT-N 418 ++VLP+ IHGDAA GQG+V ET +S GY V G + ++INNQ+GFTT N Sbjct: 344 P-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSN 398 Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478 P ARS Y +DI K + PIFHVN DDPEAV V R+A+ FR F + V ID+VCYRR Sbjct: 399 PLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458 Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538 GHNE DEPS TQP+MY+ I+ H + ++YAD L + +V + ++ + N + L+A Sbjct: 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDC 518 Query: 539 ESESYCPEKLGLL-------HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLM 591 + P + H + E N V + L+++ I +P++ V ++ Sbjct: 519 VVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIY 578 Query: 592 ANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKR 651 +RQ M K DW AE+LA+ +L EG VRLSG+D RGTF HRHA++ +Q G Sbjct: 579 GDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGST 638 Query: 652 YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711 Y PL +I QG V +S LSE+AVL FEYGY+ LTIWEAQFGDFANGAQV++D Sbjct: 639 YTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698 Query: 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYF 771 QFI++GEQKW LV LLPHGYEGQGPEHSSARLER+LQ+CAE NM V ++PA + Sbjct: 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVY 758 Query: 772 HILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKL 831 H+LRRQ RPL++M+PKSLLRH VSSL ++ G+ F + + E Sbjct: 759 HMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGEIDE--------- 808 Query: 832 KEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-E 890 + ++RV++C+GKVYYDLL+ R N D+ ++RIEQLYPFP + +VL +F + Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKD 868 Query: 891 IVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950 VWCQEEP N GAW + + +V+ + +RY GR SAS AVGHMS H +Q Sbjct: 869 FVWCQEEPLNQGAWYCSQHHFREVI----PFGASLRYAGRPASASPAVGHMSVHQKQQQD 924 Query: 951 FIEDAL 956 + DAL Sbjct: 925 LVNDAL 930 >1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Score = 77.3 bits (189), Expect = 1e-14 Identities = 54/350 (15%), Positives = 110/350 (31%), Gaps = 40/350 (11%) Query: 201 DFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG---ADGSEVIIPAIEEIIRQG 257 DF + E+ R + ++ A ++ I + K A G E AI IR G Sbjct: 28 DFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPG 87 Query: 258 VQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR 317 + + +R L+ + + + + D + + Sbjct: 88 -----FDWVFPY-YRDHGLALA--LGIPLKELLGQMLA-------TKADPNKGRQMPEHP 132 Query: 318 QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHG 377 + + S + P G+ + + L+ G V + Sbjct: 133 GSKALNF----FTVASPIASHVPPAAGAAISMKLLRTGQVA---------------VCTF 173 Query: 378 DAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI 437 +G + + G + + NN + + +D + + GI Sbjct: 174 GDGATSEGDWYAGINFAAVQGAP---AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGI 230 Query: 438 PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTI 497 P + V+G D A VV+ AV + ++++ YR H+ D+ S +P Sbjct: 231 PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAF 290 Query: 498 RSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEK 547 K + + L + +++ + + LE KE+E P Sbjct: 291 WRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVP 340 >1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Score = 73.6 bits (180), Expect = 2e-13 Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 24/270 (8%) Query: 657 NISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITA 716 + + G V+++ L+E +LGF G ++ L + + + +++ Sbjct: 90 GLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLR 149 Query: 717 GEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776 + LV P G +G + S E + V ++P N +L+ Sbjct: 150 YRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTP--GLVVVMPSTPYNAKGLLKA 207 Query: 777 QIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSH 836 I P++ + PK L R R + V D + +E Sbjct: 208 AIRGD--DPVVFLEPKILYRAPR--------------EEVPEGDYVVEIGKARVAREGDD 251 Query: 837 IRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQE 896 + ++ G V + L+ + + ++ ++ L P D ++K +S+ ++ + Sbjct: 252 V--TLVTYGAVVHKALEAAERVKA-SVEVVDLQTLNPLDFDTVLKSVSKT--GRLIIAHD 306 Query: 897 EPQNMGAWTFIEPYL-EKVLHSIGADYSRV 925 P+ G + + EK L + A R+ Sbjct: 307 SPKTGGLGAEVRALVAEKALDRLTAPVIRL 336 >1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Score = 71.3 bits (174), Expect = 1e-12 Identities = 52/343 (15%), Positives = 110/343 (32%), Gaps = 42/343 (12%) Query: 205 NFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG---ADGSEVIIPAIEEIIRQGVQQG 261 + + R + +++ F+ + + + K + G E I + + Sbjct: 70 DIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNR----- 124 Query: 262 VDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICG 321 +M +R + +++ + + + + G Sbjct: 125 -TDMCFPT-YRQQSILMA--RDVSLVEMICQLLSN------------------ERDPLKG 162 Query: 322 KDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAF 381 + + ++ + + + VG S ++ + GD A Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQF-------VQAVGWAMASAIKGDTKIASAWIGDGAT 215 Query: 382 AGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARS-CTYASDISKSIGIPIF 440 A + + + V I ++NNQ +T + A T + GI Sbjct: 216 A-ESDFHTALTFAHVYRAPV---ILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASL 271 Query: 441 HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSH 500 V+G+D AV R A + +I+ V YR H+ D+PS +P + Sbjct: 272 RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL 331 Query: 501 KSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESY 543 + L+K S++E Q+ + + A KE+E Y Sbjct: 332 GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQY 374 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 67.7 bits (165), Expect = 1e-11 Identities = 89/511 (17%), Positives = 142/511 (27%), Gaps = 210/511 (41%) Query: 320 CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDL-----KAGIVGEKSISLVERSRVLPLI 374 G D+ L + ++ ++L A I+ ++ S + + Sbjct: 97 EGNDIHALAAKLLQEND-------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149 Query: 375 IHGD----AAFAGQGIVSETFG-LSGLSGYTV-----------AGNI--HLIINNQI--- 413 G+ A F GQG + F L L Y + LI Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207 Query: 414 ----GFT-----TNPSSARSCTYASDISKSIGIPI------------FHVNGDDPEAVIR 452 G NPS+ Y +S I P+ + G P + Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265 Query: 453 ------------VVRMAV-------SFRMKFHKSVV----IDIVCYRRFG---------- 479 V +A+ SF + K++ I + CY + Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325 Query: 480 ----HNEGDEPSFTQPMMYKTIRS-HKSVLQLYAD--------------SLM---KNQVI 517 +NEG PS PM+ +I + + +Q Y + SL+ KN V+ Sbjct: 326 DSLENNEG-VPS---PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379 Query: 518 S--KQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERK----N----------- 560 S Q L L K +A +S P ERK N Sbjct: 380 SGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFS---------ERKLKFSNRFLPVASPFHS 429 Query: 561 ----SVSKEILKKIGSSIIRLPKS------FNTH----------KIVERLMANRQKMIET 600 S I K + + + ++T I ER++ I Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV----DCI-I 484 Query: 601 GKGIDWSMAES------LAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQE-TGKRYF 653 + W L FG G SG G +HR +++ TG R Sbjct: 485 RLPVKWETTTQFKATHILDFGP----G---GASGL----GVLTHR-----NKDGTGVRVI 528 Query: 654 PLGNISKDQGHCEVVNSFLSEQAVLGFEYGY 684 G + D + +YG+ Sbjct: 529 VAGTL--DINP----DD----------DYGF 543 Score = 62.7 bits (152), Expect = 4e-10 Identities = 98/579 (16%), Positives = 160/579 (27%), Gaps = 223/579 (38%) Query: 485 EPSFTQPMMYKTIRSHKSVLQLYADSLMK-----NQVISKQELQSLANNWHKYL-----E 534 E P S QL + E + A K+L Sbjct: 17 EHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71 Query: 535 AEYKESESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANR 594 E + + + L L E E L+ G+ I H + +L+ Sbjct: 72 VEPSKVGQF-DQVLNLCLT-EFEN------CYLE--GNDI---------HALAAKLLQEN 112 Query: 595 QKMIETGKGIDWSMAESLAFGSLCYEGYK-VRLSGQDCERGTFSHRHAILCDQETGKRYF 653 + K + + Y ++ + ++ A+ G Sbjct: 113 DTTLVKTKEL-------IK----NY--ITARIMAKRPFDK---KSNSALFRAVGEGN--A 154 Query: 654 PLGNISKDQGHCE---------------VVNSFLSEQAVLGFEYGYSLNNLNALTI-WEA 697 L I QG+ + +V + A L+ L T+ E Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-------LSELIRTTLDAEK 207 Query: 698 QFGDFANGAQVILDQFITAGEQKWLCTSN----------------LVCL--LPHGYE--- 736 F G L+ I +WL + L+ + L H Y Sbjct: 208 VFT---QG----LN--I----LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YVVTA 253 Query: 737 ---GQGP-E----------HS----SARLERFLQMCAENNMYVANCTSPANY-------- 770 G P E HS +A A +A S ++ Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTA--------VA-----IAETDSWESFFVSVRKAI 300 Query: 771 ---FHI-LR-RQIYDRSSRPLIMMA---------PKSLLRHKRVVSSLSDMTCGSVFQAV 816 F I +R + Y +S P ++ P +L S+S++T Q Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-------SISNLT-----QEQ 348 Query: 817 LSDDAEYHGKTSVKLKEDSHI-------RRVILCTG--KVYYDLLDNRDMRNI-ADIYLL 866 + +Y KT+ L + + ++ +G + Y L N +R A L Sbjct: 349 V---QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL--NLTLRKAKAPSGLD 403 Query: 867 --RIEQLYPFPEDYLIKVLSRF--VQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADY 922 RI PF E L K +RF V + P F L I D Sbjct: 404 QSRI----PFSERKL-KFSNRFLPVAS--------P-------FHSHLLVPASDLINKDL 443 Query: 923 SR--VRYVG---RLPSASTAVGHMSRHLEQLSSFIEDAL 956 + V + ++P T G L LS I + + Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISERI 479 Score = 60.3 bits (146), Expect = 2e-09 Identities = 98/616 (15%), Positives = 159/616 (25%), Gaps = 260/616 (42%) Query: 372 PLII-HGDAAF-----------AGQGIVSETFGLSGLSGYT--VAGN------IHLIINN 411 PL + HG A Q + E F L T A + L+ Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQ--LQEQF-NKILPEPTEGFAADDEPTTPAELVGK- 63 Query: 412 QIGFTTNPSSARSCTYASDISKSIGIPIFHVN---GDDPEAVIRVVRMAVSFRMKFHKSV 468 +G+ ++ + + F G+D A+ ++ K+ Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLC-LTEFENCYLEGNDIHAL--AAKLLQENDTTLVKTK 120 Query: 469 VIDIVCYRRFGHNEGDE-PSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQ------- 520 + I Y + +++ + + QL A + Q Sbjct: 121 EL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QLVA-------IFGGQGNTDDYF 170 Query: 521 -ELQSLANNWHKY-----------------LEAEYKESESYCPEKLGLLH--NGENERKN 560 EL+ L + Y L ++E + L +L + + Sbjct: 171 EELRDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227 Query: 561 S-------VSKEILKKIGSSIIRL-------------PKSFNTHKIVERLMANRQKMIET 600 +S IG +I+L P L T Sbjct: 228 KDYLLSIPIS---CPLIG--VIQLAHYVVTAKLLGFTPGELR-----SYLKGA------T 271 Query: 601 G--KGI----------DWS-------MAESLAF--GSLCYEGYKVRLS-----GQDCER- 633 G +G+ W A ++ F G CYE Y S +D Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLEN 330 Query: 634 --GTFSHRHAILCDQETGKRYFPLGNISKD--QGHCEVVNSFL--SEQAVLGFEYGYSLN 687 G S +I N++++ Q + NS L +Q + SL Sbjct: 331 NEGVPSPMLSI--------S-----NLTQEQVQDYVNKTNSHLPAGKQVEI------SL- 370 Query: 688 NLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLL-----PHGYEGQG--P 740 NGA + +G + L L L P G Q P Sbjct: 371 ---------------VNGA----KNLVVSGPPQSLY--GLNLTLRKAKAPSG-LDQSRIP 408 Query: 741 EHSSARLE---RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRH 797 S +L+ RFL + SP FH S LL Sbjct: 409 -FSERKLKFSNRFLPV-----------ASP---FH----------S---------HLLV- 433 Query: 798 KRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLK-EDSHIRRVILCTGKVYYDLLDNRD 856 + D + + V +D I VY D D D Sbjct: 434 -------------PASDLINKDLVKNN----VSFNAKDIQI--------PVY-DTFDGSD 467 Query: 857 MRNI-ADIYLLRIEQL 871 +R + I E++ Sbjct: 468 LRVLSGSI----SERI 479 Score = 48.8 bits (116), Expect = 5e-06 Identities = 92/569 (16%), Positives = 165/569 (28%), Gaps = 257/569 (45%) Query: 12 SSFLDGTNCCYIEDLYKSYQEDP-------SSVCKDWYPLFSFLDENSEE------YDNL 58 + +L+G + I L ++ + K++ ++ + + Sbjct: 93 NCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149 Query: 59 EDGIASFLKEESVASAVFS-QKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKAN 117 +G A + A+F Q G T D+F+ ++ D Y++Y Sbjct: 150 GEGNAQLV-------AIFGGQ-----------GNTD---DYFE--ELRDLYQTYHVL--- 183 Query: 118 IDPLGYNSHQKDLSELSPAHYGFVKADYDR-KICMKG--VLG-------------LESAT 161 + L S + LSEL + D K+ +G +L L S Sbjct: 184 VGDLIKFS-AETLSELI-------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235 Query: 162 I--PEI--VDVLSHLY--CSNIGV---EFM--------H---IV--------DSIERDWV 193 I P I + L+H +G E H +V DS W Sbjct: 236 ISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS----W- 289 Query: 194 RNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEI 253 E F + R + L F FI G + + A + + P+I Sbjct: 290 ----ES--FFVSV-----RKAITVL-----F--FI-----GVRCYEAYPNTSLPPSI--- 323 Query: 254 IRQGVQQGVDE-------M--ILGMAHRGRLNVLSQIMNK-LPRSIFYEFKGKGPSEKEY 303 ++ ++ M I + + ++ N LP Sbjct: 324 ----LEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAG--------------- 363 Query: 304 SGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIG--------SVRARQDLKAG 355 +Q+ + L + +L VV G ++ R KA Sbjct: 364 -------------KQVE-----ISLVNGAKNL-----VVSGPPQSLYGLNLTLR-KAKAP 399 Query: 356 IVGEKS-ISLVER-----SRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLII 409 ++S I ER +R LP V+ F L + +I Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLP--------------VASPFHSHLLVPASD------LI 439 Query: 410 NNQIGFTTNPSSARSCTYASDIS---KSIGIPIFH-VNGDD----PEAVI-RVVRM---- 456 N + +++S K I IP++ +G D ++ R+V Sbjct: 440 NKDLV-------------KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486 Query: 457 ------AVSFRMKFHKSVVIDIVCYRRFG 479 F+ H ++D FG Sbjct: 487 PVKWETTTQFKAT-H---ILD------FG 505 Score = 39.9 bits (93), Expect = 0.002 Identities = 59/339 (17%), Positives = 87/339 (25%), Gaps = 158/339 (46%) Query: 63 ASFLKEESVASAV---F-----SQK--------KSAVESSCSLGETQ-----SVKDFF-- 99 SF SV A+ F + S +E S E S+ + Sbjct: 290 ESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347 Query: 100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSE-----LS------------PAH--YGF 140 QV ++ NSH L +S P YG Sbjct: 348 QVQDYVNKT---------------NSH---LPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389 Query: 141 VKADYDRKICMKGVLGLESATIPEIVDVLSH----LYCSN----IGVEFMHIVDSIERDW 192 RK K GL+ + IP L SN + F H Sbjct: 390 NL--TLRKA--KAPSGLDQSRIP-------FSERKLKFSNRFLPVASPF-H--------- 428 Query: 193 VRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAK-RF-------GAD--- 241 S I LV+ ++ + + G+D Sbjct: 429 ----------SHLLVPASDL-INKDLVKN-------NVSFNAKDIQIPVYDTFDGSDLRV 470 Query: 242 GSEVIIPAIEEIIRQGVQQGVD-EMILGM--AHRGRLNVLSQIMNKLPRSIFYEFKGKGP 298 S I I + ++ V E H +L +F G G Sbjct: 471 LSGSISERI---VDCIIRLPVKWETTTQFKATH-----IL-------------DF-GPGG 508 Query: 299 SEKEYSGDVKYHLGLCCNRQICGKDVKLL----LQSNPS 333 + SG LG+ +R G V+++ L NP Sbjct: 509 A----SG-----LGVLTHRNKDGTGVRVIVAGTLDINPD 538 Score = 29.5 bits (66), Expect = 3.2 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 49/160 (30%) Query: 177 IGVEFMHIVDSIERDWVR--NTIED-YDFS------SN-------FSKEEQRDILDKLVR 220 +G++ + + W R N +D Y FS +N F E+ + I + Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-S 1689 Query: 221 AEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQ 280 A FE +D K K E+I ++ ++E R +LS Sbjct: 1690 AMIFETIVDGKLK----------------TEKIFKE-----INEHSTSYTFRSEKGLLSA 1728 Query: 281 IMNKLP------RSIFYEFKGKG--PSEKEYSGDVKYHLG 312 P ++ F + K KG P++ ++G + LG Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAG---HSLG 1765 >2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, ketoacid dehydrogenase, branched-chain, multi- enzyme complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Score = 50.6 bits (120), Expect = 2e-06 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 1/139 (0%) Query: 405 IHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKF 464 I NN +T S + GI V+G+D AV + A + Sbjct: 216 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAE 275 Query: 465 HKSVVIDIVCYRRFGHNEGDEPSFTQPM-MYKTIRSHKSVLQLYADSLMKNQVISKQELQ 523 ++ +I+ + YR + D+ S + + + L+ +++ + Sbjct: 276 NQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 335 Query: 524 SLANNWHKYLEAEYKESES 542 + + + ++++E Sbjct: 336 AWRKQSRRKVMEAFEQAER 354 >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Length = 395 Score = 34.4 bits (78), Expect = 0.13 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%) Query: 840 VILCTGKVYYDLLDNRDMRNIADIY--LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEE 897 ++ TG V L M I LL+IE ++PF + + ++ R + ++ E Sbjct: 295 GVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAER---VDKLYVPEM 351 Query: 898 PQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLE 946 N+G + +++ + + G + + + R + Sbjct: 352 --NLGQ---LYHLIKEGANGKAEVKLISKIGGEVHTPMEIFEFIRREFK 395 >1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Length = 464 Score = 33.0 bits (74), Expect = 0.36 Identities = 4/31 (12%), Positives = 11/31 (35%) Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYV 761 + GQ + + + + +NN+ Sbjct: 58 IVLSDGGQWTKDDIQTVRNLISLAEDNNLVA 88 >2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Length = 294 Score = 32.1 bits (72), Expect = 0.53 Identities = 20/197 (10%), Positives = 52/197 (26%), Gaps = 12/197 (6%) Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMA 790 + GQ + + +++ +N M A + A Sbjct: 50 IVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVHDATGRDSRSDLNRAVDYWIEMKDA 109 Query: 791 PKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYD 850 + V+ ++++ GS + +D + G+ Sbjct: 110 LIG--KEDTVIINIANEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQYPQS 167 Query: 851 LLDNRDMRNIAD-----IYLLRIEQLYPFPEDYLIKVLSRFVQAEI-VWCQE--EPQNMG 902 + D AD ++ + + + + + + R + ++ + E Sbjct: 168 IHDYGQDVFNADPLKNTMFSIHMYEYAGGDANTVRSNIDRVIDQDLALVIGEFGHRHTDV 227 Query: 903 AWTFIEPYLEKVLHSIG 919 I Y E+ G Sbjct: 228 DEDTILSYSEE--TGTG 242 >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Length = 1231 Score = 31.9 bits (72), Expect = 0.76 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%) Query: 838 RRVILCTGKVYYDLLDNRDMRNIADIY--LLRIEQLYPFPEDYLIKVLSRFVQAEIV 892 RVI+ G + + + L+++ PF + L + V Sbjct: 269 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITV 325 >1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A {Thermomonospora fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Length = 302 Score = 31.4 bits (70), Expect = 1.1 Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%) Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYV-ANCTSPANYFHILRRQIYDRSSRPLIMM 789 + + ++ + + + +C +N + Y D++ I + Sbjct: 51 VVLSNGVRWSKNGPSDVANVISLCKQNRLICMLEVHDTTGYGEQSGASTLDQAVDYWIEL 110 Query: 790 A 790 Sbjct: 111 K 111 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.6 bits (68), Expect = 1.8 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 52/162 (32%) Query: 414 GFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIV 473 GF + +D++ +G+PI+ +V MA + K +SV Sbjct: 1176 GFMEAQGAGIQIIMQADLALKMGVPIYG-----------IVAMAATATDKIGRSV----- 1219 Query: 474 CYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSL----MKNQVISKQ--------- 520 P+ + ++ T R H S ++ + +L K Q+++++ Sbjct: 1220 ------------PAPGKGIL-TTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVEN 1266 Query: 521 ELQSLANNWHKYLEAEYKESE---SYCPEKLGLLHNGENERK 559 EL++L LEAE SE + E+ +HN E E + Sbjct: 1267 ELEALK------LEAEEIPSEDQNEFLLERTREIHN-EAESQ 1301 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.4 bits (67), Expect = 2.3 Identities = 5/15 (33%), Positives = 11/15 (73%) Query: 495 KTIRSHKSVLQLYAD 509 + ++ ++ L+LYAD Sbjct: 20 QALKKLQASLKLYAD 34 >1wxn_A Toxin apetx2; anthopleura elegantissima toxin 2, ASIC, acid- sensing ION channel; NMR {Anthopleura elegantissima} Length = 42 Score = 30.0 bits (67), Expect = 2.7 Identities = 9/29 (31%), Positives = 19/29 (65%) Query: 287 RSIFYEFKGKGPSEKEYSGDVKYHLGLCC 315 + I++ ++ P+++ Y+G +Y LG CC Sbjct: 10 KGIYWFYRPSCPTDRGYTGSCRYFLGTCC 38 >1wqk_A Toxin apetx1; SEA anemone toxin, structure determination, potassium channel inhibitor, HERG; NMR {Anthopleura elegantissima} Length = 42 Score = 30.0 bits (67), Expect = 2.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 287 RSIFYEFKGKGPSEKEYSGDVKYHLGLCC 315 I++ PS + Y+G Y LG+CC Sbjct: 10 IGIYWFGTKTCPSNRGYTGSCGYFLGICC 38 >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Score = 29.7 bits (66), Expect = 3.0 Identities = 14/94 (14%), Positives = 29/94 (30%) Query: 474 CYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYL 533 +R P FT Y+ ++ D L + E S + +YL Sbjct: 118 SFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYL 177 Query: 534 EAEYKESESYCPEKLGLLHNGENERKNSVSKEIL 567 E + ++ ++ + N ++ L Sbjct: 178 EIDPLSADKTQLREVAAKLDLSNVADTEEDRDTL 211 >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, calcium cation, chloride anion, zinc IONS, dipeptidase; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* 3d7g_A* 3d7h_A* ... Length = 707 Score = 29.5 bits (65), Expect = 3.5 Identities = 9/51 (17%), Positives = 14/51 (27%) Query: 375 IHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSC 425 GD + + F L G G I + +I +A Sbjct: 127 PEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLA 177 >2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22 Length = 551 Score = 29.5 bits (66), Expect = 3.9 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 23/97 (23%) Query: 516 VISKQELQSLANNWHKYLEAEYKE------------SESYCPEKL-------GLLHNGEN 556 +I++++L +A+ K E EY + E L+ N + Sbjct: 2 LITREQLMKIASIPLKRKEPEYNLILDALENFNRDIEGTSVKEIYSKLSKLNELVDNYQT 61 Query: 557 ERKNSVSKEILKKIG----SSIIRLPKSFNTHKIVER 589 + +S L+ S + L K+ T I + Sbjct: 62 KYPSSGRNLALENFRDSLYSELRELIKNSRTSTIASK 98 >2ao3_A 29-kDa galactose-binding lectin; earthworm lumbricus terrestris, hemagglutinin, R-type lectin, beta-trefoil fold, sugar complex; HET: MGC; 1.80A {Lumbricus terrestris} PDB: 2d12_A* 2zqo_A* 2zqn_A* 2dry_A* 2drz_A* 2ds0_A* Length = 130 Score = 29.5 bits (65), Expect = 3.9 Identities = 6/43 (13%), Positives = 13/43 (30%) Query: 683 GYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTS 725 + + + D GA + + QK++ S Sbjct: 87 NTIAQLSDRDIVLDIIKSDKEAGAHICAWKQHGGPNQKFIIES 129 >1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.114.1.1 Length = 113 Score = 28.6 bits (64), Expect = 6.7 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 439 IFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY 475 +FH++ DD V+ ++ + M +SV I++V Y Sbjct: 7 VFHIDEDDESRVLLLISNVRNL-MADLESVRIEVVAY 42 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 8,336,335 Number of extensions: 399531 Number of successful extensions: 1246 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1226 Number of HSP's successfully gapped: 31 Length of query: 957 Length of database: 5,693,230 Length adjustment: 101 Effective length of query: 856 Effective length of database: 3,244,586 Effective search space: 2777365616 Effective search space used: 2777365616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.0 bits)