RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (957 letters)



>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein,
           oxidoreductase, thiamine diphosphate, thiamine
           pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A
           {Escherichia coli} PDB: 2jgd_B*
          Length = 933

 Score =  983 bits (2542), Expect = 0.0
 Identities = 410/966 (42%), Positives = 566/966 (58%), Gaps = 46/966 (4%)

Query: 1   MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60
           M     K +  SS+L G N  +IE LY+ +  DP SV  +W   F  L     + D    
Sbjct: 1   MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHS 60

Query: 61  GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120
               + +  +         K A   S ++ +  +     +V+++I+AYR  GH  AN+DP
Sbjct: 61  QTREYFRRLA---------KDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDP 111

Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVL-GLESATIPEIVDVLSHLYCSNIGV 179
           LG    Q  +++L P+ +   +AD+     +     G E+  + E+++ L   YC  IG 
Sbjct: 112 LGL-WQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGA 170

Query: 180 EFMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG 239
           E+MHI  + E+ W++  IE     + F+ EE++  L +L  AEG E+++  K+ GAKRF 
Sbjct: 171 EYMHITSTEEKRWIQQRIES--GRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS 228

Query: 240 ADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPS 299
            +G + +IP ++E+IR     G  E++LGMAHRGRLNVL  ++ K P+ +F EF GK   
Sbjct: 229 LEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGK-HK 287

Query: 300 EKEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGE 359
           E   +GDVKYH+G   + Q  G  V L L  NPSHLE V PVVIGSVRAR D     + E
Sbjct: 288 EHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLD----RLDE 343

Query: 360 KSISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTT-N 418
                   ++VLP+ IHGDAA  GQG+V ET  +S   GY V G + ++INNQ+GFTT N
Sbjct: 344 P-----SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSN 398

Query: 419 PSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRF 478
           P  ARS  Y +DI K +  PIFHVN DDPEAV  V R+A+ FR  F + V ID+VCYRR 
Sbjct: 399 PLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRH 458

Query: 479 GHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYK 538
           GHNE DEPS TQP+MY+ I+ H +  ++YAD L + +V + ++   + N +   L+A   
Sbjct: 459 GHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDC 518

Query: 539 ESESYCPEKLGLL-------HNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLM 591
               + P  +          H  + E  N V  + L+++   I  +P++      V ++ 
Sbjct: 519 VVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIY 578

Query: 592 ANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKR 651
            +RQ M    K  DW  AE+LA+ +L  EG  VRLSG+D  RGTF HRHA++ +Q  G  
Sbjct: 579 GDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGST 638

Query: 652 YFPLGNISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILD 711
           Y PL +I   QG   V +S LSE+AVL FEYGY+      LTIWEAQFGDFANGAQV++D
Sbjct: 639 YTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVID 698

Query: 712 QFITAGEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYF 771
           QFI++GEQKW     LV LLPHGYEGQGPEHSSARLER+LQ+CAE NM V   ++PA  +
Sbjct: 699 QFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVY 758

Query: 772 HILRRQIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKL 831
           H+LRRQ      RPL++M+PKSLLRH   VSSL ++  G+ F   + +  E         
Sbjct: 759 HMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT-FLPAIGEIDE--------- 808

Query: 832 KEDSHIRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQA-E 890
            +   ++RV++C+GKVYYDLL+ R   N  D+ ++RIEQLYPFP   + +VL +F    +
Sbjct: 809 LDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKD 868

Query: 891 IVWCQEEPQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSS 950
            VWCQEEP N GAW   + +  +V+       + +RY GR  SAS AVGHMS H +Q   
Sbjct: 869 FVWCQEEPLNQGAWYCSQHHFREVI----PFGASLRYAGRPASASPAVGHMSVHQKQQQD 924

Query: 951 FIEDAL 956
            + DAL
Sbjct: 925 LVNDAL 930


>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
           tetramer, structural genomics; HET: TDP; 1.90A {Thermus
           thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
           1umb_A*
          Length = 367

 Score = 77.3 bits (189), Expect = 1e-14
 Identities = 54/350 (15%), Positives = 110/350 (31%), Gaps = 40/350 (11%)

Query: 201 DFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG---ADGSEVIIPAIEEIIRQG 257
           DF  +   E+ R +   ++ A   ++   I  +  K      A G E    AI   IR G
Sbjct: 28  DFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPG 87

Query: 258 VQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNR 317
                 + +    +R     L+  +    + +  +             D      +  + 
Sbjct: 88  -----FDWVFPY-YRDHGLALA--LGIPLKELLGQMLA-------TKADPNKGRQMPEHP 132

Query: 318 QICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHG 377
                +      +  S +    P   G+  + + L+ G V                +   
Sbjct: 133 GSKALNF----FTVASPIASHVPPAAGAAISMKLLRTGQVA---------------VCTF 173

Query: 378 DAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCTYASDISKSIGI 437
                 +G        + + G      + +  NN    + +          +D + + GI
Sbjct: 174 GDGATSEGDWYAGINFAAVQGAP---AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGI 230

Query: 438 PIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTI 497
           P + V+G D  A   VV+ AV    +     ++++  YR   H+  D+ S  +P      
Sbjct: 231 PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAF 290

Query: 498 RSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESYCPEK 547
              K  +  +   L    + +++  + +       LE   KE+E   P  
Sbjct: 291 WRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVP 340


>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
           2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
          Length = 369

 Score = 73.6 bits (180), Expect = 2e-13
 Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 657 NISKDQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITA 716
            + +  G   V+++ L+E  +LGF  G ++  L  +   +     +    +++       
Sbjct: 90  GLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLR 149

Query: 717 GEQKWLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRR 776
                   + LV   P G   +G  + S   E          + V   ++P N   +L+ 
Sbjct: 150 YRSGGNYKAPLVVRTPVGSGTRGGLYHSNSPEAIFVHTP--GLVVVMPSTPYNAKGLLKA 207

Query: 777 QIYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSH 836
            I      P++ + PK L R  R              + V   D       +   +E   
Sbjct: 208 AIRGD--DPVVFLEPKILYRAPR--------------EEVPEGDYVVEIGKARVAREGDD 251

Query: 837 IRRVILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQE 896
           +   ++  G V +  L+  +      + ++ ++ L P   D ++K +S+     ++   +
Sbjct: 252 V--TLVTYGAVVHKALEAAERVKA-SVEVVDLQTLNPLDFDTVLKSVSKT--GRLIIAHD 306

Query: 897 EPQNMGAWTFIEPYL-EKVLHSIGADYSRV 925
            P+  G    +   + EK L  + A   R+
Sbjct: 307 SPKTGGLGAEVRALVAEKALDRLTAPVIRL 336


>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
           cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
           putida} SCOP: c.36.1.11 PDB: 2bp7_A
          Length = 407

 Score = 71.3 bits (174), Expect = 1e-12
 Identities = 52/343 (15%), Positives = 110/343 (32%), Gaps = 42/343 (12%)

Query: 205 NFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFG---ADGSEVIIPAIEEIIRQGVQQG 261
           +   +  R  +  +++   F+  + +  +  K      + G E I       + +     
Sbjct: 70  DIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNR----- 124

Query: 262 VDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSEKEYSGDVKYHLGLCCNRQICG 321
             +M     +R +  +++   +     +  +                          + G
Sbjct: 125 -TDMCFPT-YRQQSILMA--RDVSLVEMICQLLSN------------------ERDPLKG 162

Query: 322 KDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEKSISLVERSRVLPLIIHGDAAF 381
           + + ++     +    +   +              VG    S ++    +     GD A 
Sbjct: 163 RQLPIMYSVREAGFFTISGNLATQF-------VQAVGWAMASAIKGDTKIASAWIGDGAT 215

Query: 382 AGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARS-CTYASDISKSIGIPIF 440
           A +         + +    V   I  ++NNQ   +T  + A    T  +      GI   
Sbjct: 216 A-ESDFHTALTFAHVYRAPV---ILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASL 271

Query: 441 HVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEPSFTQPMMYKTIRSH 500
            V+G+D  AV    R A     +     +I+ V YR   H+  D+PS  +P    +    
Sbjct: 272 RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL 331

Query: 501 KSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKESESY 543
              +      L+K    S++E Q+    +   + A  KE+E Y
Sbjct: 332 GDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQY 374


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 67.7 bits (165), Expect = 1e-11
 Identities = 89/511 (17%), Positives = 142/511 (27%), Gaps = 210/511 (41%)

Query: 320 CGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDL-----KAGIVGEKSISLVERSRVLPLI 374
            G D+  L        +        ++   ++L      A I+ ++       S +   +
Sbjct: 97  EGNDIHALAAKLLQEND-------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149

Query: 375 IHGD----AAFAGQGIVSETFG-LSGLSGYTV-----------AGNI--HLIINNQI--- 413
             G+    A F GQG   + F  L  L  Y             +      LI        
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207

Query: 414 ----GFT-----TNPSSARSCTYASDISKSIGIPI------------FHVNGDDPEAVIR 452
               G        NPS+     Y   +S  I  P+              + G  P  +  
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYL--LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265

Query: 453 ------------VVRMAV-------SFRMKFHKSVV----IDIVCYRRFG---------- 479
                       V  +A+       SF +   K++     I + CY  +           
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325

Query: 480 ----HNEGDEPSFTQPMMYKTIRS-HKSVLQLYAD--------------SLM---KNQVI 517
               +NEG  PS   PM+  +I +  +  +Q Y +              SL+   KN V+
Sbjct: 326 DSLENNEG-VPS---PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379

Query: 518 S--KQELQSLANNWHKYLEAEYKESESYCPEKLGLLHNGENERK----N----------- 560
           S   Q L  L     K  +A     +S  P           ERK    N           
Sbjct: 380 SGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFS---------ERKLKFSNRFLPVASPFHS 429

Query: 561 ----SVSKEILKKIGSSIIRLPKS------FNTH----------KIVERLMANRQKMIET 600
                 S  I K +  + +           ++T            I ER++      I  
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV----DCI-I 484

Query: 601 GKGIDWSMAES------LAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQE-TGKRYF 653
              + W           L FG     G     SG     G  +HR     +++ TG R  
Sbjct: 485 RLPVKWETTTQFKATHILDFGP----G---GASGL----GVLTHR-----NKDGTGVRVI 528

Query: 654 PLGNISKDQGHCEVVNSFLSEQAVLGFEYGY 684
             G +  D       +           +YG+
Sbjct: 529 VAGTL--DINP----DD----------DYGF 543



 Score = 62.7 bits (152), Expect = 4e-10
 Identities = 98/579 (16%), Positives = 160/579 (27%), Gaps = 223/579 (38%)

Query: 485 EPSFTQPMMYKTIRSHKSVLQLYADSLMK-----NQVISKQELQSLANNWHKYL-----E 534
           E     P       S     QL                +  E  + A    K+L      
Sbjct: 17  EHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71

Query: 535 AEYKESESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANR 594
            E  +   +  + L L    E E         L+  G+ I         H +  +L+   
Sbjct: 72  VEPSKVGQF-DQVLNLCLT-EFEN------CYLE--GNDI---------HALAAKLLQEN 112

Query: 595 QKMIETGKGIDWSMAESLAFGSLCYEGYK-VRLSGQDCERGTFSHRHAILCDQETGKRYF 653
              +   K +       +      Y       ++ +  ++       A+      G    
Sbjct: 113 DTTLVKTKEL-------IK----NY--ITARIMAKRPFDK---KSNSALFRAVGEGN--A 154

Query: 654 PLGNISKDQGHCE---------------VVNSFLSEQAVLGFEYGYSLNNLNALTI-WEA 697
            L  I   QG+ +               +V   +   A         L+ L   T+  E 
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET-------LSELIRTTLDAEK 207

Query: 698 QFGDFANGAQVILDQFITAGEQKWLCTSN----------------LVCL--LPHGYE--- 736
            F     G    L+  I     +WL   +                L+ +  L H Y    
Sbjct: 208 VFT---QG----LN--I----LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YVVTA 253

Query: 737 ---GQGP-E----------HS----SARLERFLQMCAENNMYVANCTSPANY-------- 770
              G  P E          HS    +A         A     +A   S  ++        
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTA--------VA-----IAETDSWESFFVSVRKAI 300

Query: 771 ---FHI-LR-RQIYDRSSRPLIMMA---------PKSLLRHKRVVSSLSDMTCGSVFQAV 816
              F I +R  + Y  +S P  ++          P  +L       S+S++T     Q  
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-------SISNLT-----QEQ 348

Query: 817 LSDDAEYHGKTSVKLKEDSHI-------RRVILCTG--KVYYDLLDNRDMRNI-ADIYLL 866
           +    +Y  KT+  L     +        + ++ +G  +  Y L  N  +R   A   L 
Sbjct: 349 V---QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL--NLTLRKAKAPSGLD 403

Query: 867 --RIEQLYPFPEDYLIKVLSRF--VQAEIVWCQEEPQNMGAWTFIEPYLEKVLHSIGADY 922
             RI    PF E  L K  +RF  V +        P       F    L      I  D 
Sbjct: 404 QSRI----PFSERKL-KFSNRFLPVAS--------P-------FHSHLLVPASDLINKDL 443

Query: 923 SR--VRYVG---RLPSASTAVGHMSRHLEQLSSFIEDAL 956
            +  V +     ++P   T  G     L  LS  I + +
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISERI 479



 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 98/616 (15%), Positives = 159/616 (25%), Gaps = 260/616 (42%)

Query: 372 PLII-HGDAAF-----------AGQGIVSETFGLSGLSGYT--VAGN------IHLIINN 411
           PL + HG               A Q  + E F    L   T   A +        L+   
Sbjct: 8   PLTLSHGSLEHVLLVPTASFFIASQ--LQEQF-NKILPEPTEGFAADDEPTTPAELVGK- 63

Query: 412 QIGFTTNPSSARSCTYASDISKSIGIPIFHVN---GDDPEAVIRVVRMAVSFRMKFHKSV 468
            +G+ ++            +     +  F      G+D  A+    ++         K+ 
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLC-LTEFENCYLEGNDIHAL--AAKLLQENDTTLVKTK 120

Query: 469 VIDIVCYRRFGHNEGDE-PSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQ------- 520
            + I  Y              +   +++ +    +  QL A       +   Q       
Sbjct: 121 EL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QLVA-------IFGGQGNTDDYF 170

Query: 521 -ELQSLANNWHKY-----------------LEAEYKESESYCPEKLGLLH--NGENERKN 560
            EL+ L   +  Y                 L     ++E    + L +L      +   +
Sbjct: 171 EELRDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227

Query: 561 S-------VSKEILKKIGSSIIRL-------------PKSFNTHKIVERLMANRQKMIET 600
                   +S      IG  +I+L             P           L         T
Sbjct: 228 KDYLLSIPIS---CPLIG--VIQLAHYVVTAKLLGFTPGELR-----SYLKGA------T 271

Query: 601 G--KGI----------DWS-------MAESLAF--GSLCYEGYKVRLS-----GQDCER- 633
           G  +G+           W         A ++ F  G  CYE Y    S      +D    
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLEN 330

Query: 634 --GTFSHRHAILCDQETGKRYFPLGNISKD--QGHCEVVNSFL--SEQAVLGFEYGYSLN 687
             G  S   +I              N++++  Q +    NS L   +Q  +      SL 
Sbjct: 331 NEGVPSPMLSI--------S-----NLTQEQVQDYVNKTNSHLPAGKQVEI------SL- 370

Query: 688 NLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTSNLVCLL-----PHGYEGQG--P 740
                           NGA       + +G  + L    L   L     P G   Q   P
Sbjct: 371 ---------------VNGA----KNLVVSGPPQSLY--GLNLTLRKAKAPSG-LDQSRIP 408

Query: 741 EHSSARLE---RFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMAPKSLLRH 797
             S  +L+   RFL +            SP   FH          S          LL  
Sbjct: 409 -FSERKLKFSNRFLPV-----------ASP---FH----------S---------HLLV- 433

Query: 798 KRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLK-EDSHIRRVILCTGKVYYDLLDNRD 856
                             +  D  + +    V    +D  I         VY D  D  D
Sbjct: 434 -------------PASDLINKDLVKNN----VSFNAKDIQI--------PVY-DTFDGSD 467

Query: 857 MRNI-ADIYLLRIEQL 871
           +R +   I     E++
Sbjct: 468 LRVLSGSI----SERI 479



 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 92/569 (16%), Positives = 165/569 (28%), Gaps = 257/569 (45%)

Query: 12  SSFLDGTNCCYIEDLYKSYQEDP-------SSVCKDWYPLFSFLDENSEE------YDNL 58
           + +L+G +   I  L     ++          + K++           ++      +  +
Sbjct: 93  NCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149

Query: 59  EDGIASFLKEESVASAVFS-QKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKAN 117
            +G A  +       A+F  Q           G T    D+F+  ++ D Y++Y      
Sbjct: 150 GEGNAQLV-------AIFGGQ-----------GNTD---DYFE--ELRDLYQTYHVL--- 183

Query: 118 IDPLGYNSHQKDLSELSPAHYGFVKADYDR-KICMKG--VLG-------------LESAT 161
           +  L   S  + LSEL        +   D  K+  +G  +L              L S  
Sbjct: 184 VGDLIKFS-AETLSELI-------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235

Query: 162 I--PEI--VDVLSHLY--CSNIGV---EFM--------H---IV--------DSIERDWV 193
           I  P I  +  L+H       +G    E          H   +V        DS    W 
Sbjct: 236 ISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS----W- 289

Query: 194 RNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEI 253
               E   F  +      R  +  L     F  FI     G + + A  +  + P+I   
Sbjct: 290 ----ES--FFVSV-----RKAITVL-----F--FI-----GVRCYEAYPNTSLPPSI--- 323

Query: 254 IRQGVQQGVDE-------M--ILGMAHRGRLNVLSQIMNK-LPRSIFYEFKGKGPSEKEY 303
               ++  ++        M  I  +  + ++       N  LP                 
Sbjct: 324 ----LEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAG--------------- 363

Query: 304 SGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIG--------SVRARQDLKAG 355
                        +Q+      + L +   +L     VV G        ++  R   KA 
Sbjct: 364 -------------KQVE-----ISLVNGAKNL-----VVSGPPQSLYGLNLTLR-KAKAP 399

Query: 356 IVGEKS-ISLVER-----SRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLII 409
              ++S I   ER     +R LP              V+  F    L   +       +I
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLP--------------VASPFHSHLLVPASD------LI 439

Query: 410 NNQIGFTTNPSSARSCTYASDIS---KSIGIPIFH-VNGDD----PEAVI-RVVRM---- 456
           N  +               +++S   K I IP++   +G D      ++  R+V      
Sbjct: 440 NKDLV-------------KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486

Query: 457 ------AVSFRMKFHKSVVIDIVCYRRFG 479
                    F+   H   ++D      FG
Sbjct: 487 PVKWETTTQFKAT-H---ILD------FG 505



 Score = 39.9 bits (93), Expect = 0.002
 Identities = 59/339 (17%), Positives = 87/339 (25%), Gaps = 158/339 (46%)

Query: 63  ASFLKEESVASAV---F-----SQK--------KSAVESSCSLGETQ-----SVKDFF-- 99
            SF    SV  A+   F       +         S +E S    E       S+ +    
Sbjct: 290 ESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347

Query: 100 QVMKMIDAYRSYGHFKANIDPLGYNSHQKDLSE-----LS------------PAH--YGF 140
           QV   ++                 NSH   L       +S            P    YG 
Sbjct: 348 QVQDYVNKT---------------NSH---LPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389

Query: 141 VKADYDRKICMKGVLGLESATIPEIVDVLSH----LYCSN----IGVEFMHIVDSIERDW 192
                 RK   K   GL+ + IP            L  SN    +   F H         
Sbjct: 390 NL--TLRKA--KAPSGLDQSRIP-------FSERKLKFSNRFLPVASPF-H--------- 428

Query: 193 VRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAK-RF-------GAD--- 241
                     S          I   LV+        ++ +     +        G+D   
Sbjct: 429 ----------SHLLVPASDL-INKDLVKN-------NVSFNAKDIQIPVYDTFDGSDLRV 470

Query: 242 GSEVIIPAIEEIIRQGVQQGVD-EMILGM--AHRGRLNVLSQIMNKLPRSIFYEFKGKGP 298
            S  I   I   +   ++  V  E        H     +L             +F G G 
Sbjct: 471 LSGSISERI---VDCIIRLPVKWETTTQFKATH-----IL-------------DF-GPGG 508

Query: 299 SEKEYSGDVKYHLGLCCNRQICGKDVKLL----LQSNPS 333
           +    SG     LG+  +R   G  V+++    L  NP 
Sbjct: 509 A----SG-----LGVLTHRNKDGTGVRVIVAGTLDINPD 538



 Score = 29.5 bits (66), Expect = 3.2
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 49/160 (30%)

Query: 177  IGVEFMHIVDSIERDWVR--NTIED-YDFS------SN-------FSKEEQRDILDKLVR 220
            +G++      + +  W R  N  +D Y FS      +N       F  E+ + I +    
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-S 1689

Query: 221  AEGFEKFIDIKYKGAKRFGADGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQ 280
            A  FE  +D K K                 E+I ++     ++E       R    +LS 
Sbjct: 1690 AMIFETIVDGKLK----------------TEKIFKE-----INEHSTSYTFRSEKGLLSA 1728

Query: 281  IMNKLP------RSIFYEFKGKG--PSEKEYSGDVKYHLG 312
                 P      ++ F + K KG  P++  ++G   + LG
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAG---HSLG 1765


>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
           ketoacid dehydrogenase, branched-chain, multi- enzyme
           complex, acylation; HET: TDP; 1.39A {Homo sapiens} SCOP:
           c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A*
           1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A*
           2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A*
           1x7z_A* ...
          Length = 400

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 1/139 (0%)

Query: 405 IHLIINNQIGFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKF 464
           I    NN    +T  S        +      GI    V+G+D  AV    + A    +  
Sbjct: 216 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAE 275

Query: 465 HKSVVIDIVCYRRFGHNEGDEPSFTQPM-MYKTIRSHKSVLQLYADSLMKNQVISKQELQ 523
           ++  +I+ + YR    +  D+ S  + +            +      L+      +++ +
Sbjct: 276 NQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK 335

Query: 524 SLANNWHKYLEAEYKESES 542
           +      + +   ++++E 
Sbjct: 336 AWRKQSRRKVMEAFEQAER 354


>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural
           genomics, southeast collaboratory for structural
           genomics, secsg; 2.30A {Pyrococcus furiosus}
          Length = 395

 Score = 34.4 bits (78), Expect = 0.13
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 840 VILCTGKVYYDLLDNRDMRNIADIY--LLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEE 897
            ++ TG V    L    M     I   LL+IE ++PF  + + ++  R    + ++  E 
Sbjct: 295 GVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELIERIAER---VDKLYVPEM 351

Query: 898 PQNMGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLE 946
             N+G    +   +++  +         +  G + +       + R  +
Sbjct: 352 --NLGQ---LYHLIKEGANGKAEVKLISKIGGEVHTPMEIFEFIRREFK 395


>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM,
           hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
          Length = 464

 Score = 33.0 bits (74), Expect = 0.36
 Identities = 4/31 (12%), Positives = 11/31 (35%)

Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYV 761
           +     GQ  +     +   + +  +NN+  
Sbjct: 58  IVLSDGGQWTKDDIQTVRNLISLAEDNNLVA 88


>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN
           BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
          Length = 294

 Score = 32.1 bits (72), Expect = 0.53
 Identities = 20/197 (10%), Positives = 52/197 (26%), Gaps = 12/197 (6%)

Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYDRSSRPLIMMA 790
           +     GQ  +     +   +++  +N M        A                  +  A
Sbjct: 50  IVLSDGGQWEKDDIDTIREVIELAEQNKMVAVVEVHDATGRDSRSDLNRAVDYWIEMKDA 109

Query: 791 PKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRVILCTGKVYYD 850
                +   V+ ++++   GS   +  +D                 +       G+    
Sbjct: 110 LIG--KEDTVIINIANEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQYPQS 167

Query: 851 LLDNRDMRNIAD-----IYLLRIEQLYPFPEDYLIKVLSRFVQAEI-VWCQE--EPQNMG 902
           + D       AD     ++ + + +      + +   + R +  ++ +   E        
Sbjct: 168 IHDYGQDVFNADPLKNTMFSIHMYEYAGGDANTVRSNIDRVIDQDLALVIGEFGHRHTDV 227

Query: 903 AWTFIEPYLEKVLHSIG 919
               I  Y E+     G
Sbjct: 228 DEDTILSYSEE--TGTG 242


>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
           iron-sulfur cluster, pyruvate catabolism, TPP-dependent
           enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
           c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
           1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
           2pda_A* 2uza_A*
          Length = 1231

 Score = 31.9 bits (72), Expect = 0.76
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 838 RRVILCTGKVYYDLLDNRDMRNIADIY--LLRIEQLYPFPEDYLIKVLSRFVQAEIV 892
            RVI+  G     + +  +          L+++    PF  +     L    +   V
Sbjct: 269 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITV 325


>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5; 1.50A
           {Thermomonospora fusca} SCOP: c.1.8.3 PDB: 2man_A*
           3man_A*
          Length = 302

 Score = 31.4 bits (70), Expect = 1.1
 Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 731 LPHGYEGQGPEHSSARLERFLQMCAENNMYV-ANCTSPANYFHILRRQIYDRSSRPLIMM 789
           +      +  ++  + +   + +C +N +           Y         D++    I +
Sbjct: 51  VVLSNGVRWSKNGPSDVANVISLCKQNRLICMLEVHDTTGYGEQSGASTLDQAVDYWIEL 110

Query: 790 A 790
            
Sbjct: 111 K 111


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.6 bits (68), Expect = 1.8
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 52/162 (32%)

Query: 414  GFTTNPSSARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIV 473
            GF     +       +D++  +G+PI+            +V MA +   K  +SV     
Sbjct: 1176 GFMEAQGAGIQIIMQADLALKMGVPIYG-----------IVAMAATATDKIGRSV----- 1219

Query: 474  CYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSL----MKNQVISKQ--------- 520
                        P+  + ++  T R H S ++  + +L     K Q+++++         
Sbjct: 1220 ------------PAPGKGIL-TTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVEN 1266

Query: 521  ELQSLANNWHKYLEAEYKESE---SYCPEKLGLLHNGENERK 559
            EL++L       LEAE   SE    +  E+   +HN E E +
Sbjct: 1267 ELEALK------LEAEEIPSEDQNEFLLERTREIHN-EAESQ 1301


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)

Query: 495 KTIRSHKSVLQLYAD 509
           + ++  ++ L+LYAD
Sbjct: 20  QALKKLQASLKLYAD 34


>1wxn_A Toxin apetx2; anthopleura elegantissima toxin 2, ASIC, acid-
           sensing ION channel; NMR {Anthopleura elegantissima}
          Length = 42

 Score = 30.0 bits (67), Expect = 2.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 287 RSIFYEFKGKGPSEKEYSGDVKYHLGLCC 315
           + I++ ++   P+++ Y+G  +Y LG CC
Sbjct: 10  KGIYWFYRPSCPTDRGYTGSCRYFLGTCC 38


>1wqk_A Toxin apetx1; SEA anemone toxin, structure determination, potassium
           channel inhibitor, HERG; NMR {Anthopleura elegantissima}
          Length = 42

 Score = 30.0 bits (67), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 287 RSIFYEFKGKGPSEKEYSGDVKYHLGLCC 315
             I++      PS + Y+G   Y LG+CC
Sbjct: 10  IGIYWFGTKTCPSNRGYTGSCGYFLGICC 38


>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
           paralog, translation, lysyl- synthetase, lysyladenylate
           analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
           3g1z_A*
          Length = 345

 Score = 29.7 bits (66), Expect = 3.0
 Identities = 14/94 (14%), Positives = 29/94 (30%)

Query: 474 CYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYL 533
            +R         P FT    Y+       ++    D L +       E  S    + +YL
Sbjct: 118 SFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYL 177

Query: 534 EAEYKESESYCPEKLGLLHNGENERKNSVSKEIL 567
           E +   ++     ++    +  N       ++ L
Sbjct: 178 EIDPLSADKTQLREVAAKLDLSNVADTEEDRDTL 211


>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active
           site, N-glycosylation, calcium cation, chloride anion,
           zinc IONS, dipeptidase; HET: NAG BIX; 1.29A {Homo
           sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A*
           2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3bi1_A* 2oot_A* 2pvv_A*
           2pvw_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* 3d7g_A*
           3d7h_A* ...
          Length = 707

 Score = 29.5 bits (65), Expect = 3.5
 Identities = 9/51 (17%), Positives = 14/51 (27%)

Query: 375 IHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSC 425
             GD  +       + F L    G    G I +    +I       +A   
Sbjct: 127 PEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLA 177


>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP:
           c.68.1.22
          Length = 551

 Score = 29.5 bits (66), Expect = 3.9
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 23/97 (23%)

Query: 516 VISKQELQSLANNWHKYLEAEYKE------------SESYCPEKL-------GLLHNGEN 556
           +I++++L  +A+   K  E EY                +   E          L+ N + 
Sbjct: 2   LITREQLMKIASIPLKRKEPEYNLILDALENFNRDIEGTSVKEIYSKLSKLNELVDNYQT 61

Query: 557 ERKNSVSKEILKKIG----SSIIRLPKSFNTHKIVER 589
           +  +S     L+       S +  L K+  T  I  +
Sbjct: 62  KYPSSGRNLALENFRDSLYSELRELIKNSRTSTIASK 98


>2ao3_A 29-kDa galactose-binding lectin; earthworm lumbricus terrestris,
           hemagglutinin, R-type lectin, beta-trefoil fold, sugar
           complex; HET: MGC; 1.80A {Lumbricus terrestris} PDB:
           2d12_A* 2zqo_A* 2zqn_A* 2dry_A* 2drz_A* 2ds0_A*
          Length = 130

 Score = 29.5 bits (65), Expect = 3.9
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 683 GYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQKWLCTS 725
                  +   + +    D   GA +   +      QK++  S
Sbjct: 87  NTIAQLSDRDIVLDIIKSDKEAGAHICAWKQHGGPNQKFIIES 129


>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein
           structure initiative; 2.30A
           {Methanothermobacterthermautotrophicus} SCOP: c.114.1.1
          Length = 113

 Score = 28.6 bits (64), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 439 IFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCY 475
           +FH++ DD   V+ ++    +  M   +SV I++V Y
Sbjct: 7   VFHIDEDDESRVLLLISNVRNL-MADLESVRIEVVAY 42


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 8,336,335
Number of extensions: 399531
Number of successful extensions: 1246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 31
Length of query: 957
Length of database: 5,693,230
Length adjustment: 101
Effective length of query: 856
Effective length of database: 3,244,586
Effective search space: 2777365616
Effective search space used: 2777365616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.0 bits)