BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (957 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 1989 bits (5154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 957/957 (100%), Positives = 957/957 (100%) Query: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED Sbjct: 1 MLQDLNKMFSLSSFLDGTNCCYIEDLYKSYQEDPSSVCKDWYPLFSFLDENSEEYDNLED 60 Query: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP Sbjct: 61 GIASFLKEESVASAVFSQKKSAVESSCSLGETQSVKDFFQVMKMIDAYRSYGHFKANIDP 120 Query: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE Sbjct: 121 LGYNSHQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180 Query: 181 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA Sbjct: 181 FMHIVDSIERDWVRNTIEDYDFSSNFSKEEQRDILDKLVRAEGFEKFIDIKYKGAKRFGA 240 Query: 241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE Sbjct: 241 DGSEVIIPAIEEIIRQGVQQGVDEMILGMAHRGRLNVLSQIMNKLPRSIFYEFKGKGPSE 300 Query: 301 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEK 360 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEK Sbjct: 301 KEYSGDVKYHLGLCCNRQICGKDVKLLLQSNPSHLEFVDPVVIGSVRARQDLKAGIVGEK 360 Query: 361 SISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS 420 SISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS Sbjct: 361 SISLVERSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPS 420 Query: 421 SARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH 480 SARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH Sbjct: 421 SARSCTYASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGH 480 Query: 481 NEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKES 540 NEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKES Sbjct: 481 NEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLEAEYKES 540 Query: 541 ESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIET 600 ESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIET Sbjct: 541 ESYCPEKLGLLHNGENERKNSVSKEILKKIGSSIIRLPKSFNTHKIVERLMANRQKMIET 600 Query: 601 GKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISK 660 GKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISK Sbjct: 601 GKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAILCDQETGKRYFPLGNISK 660 Query: 661 DQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQK 720 DQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQK Sbjct: 661 DQGHCEVVNSFLSEQAVLGFEYGYSLNNLNALTIWEAQFGDFANGAQVILDQFITAGEQK 720 Query: 721 WLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780 WLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD Sbjct: 721 WLCTSNLVCLLPHGYEGQGPEHSSARLERFLQMCAENNMYVANCTSPANYFHILRRQIYD 780 Query: 781 RSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRV 840 RSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRV Sbjct: 781 RSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYHGKTSVKLKEDSHIRRV 840 Query: 841 ILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQN 900 ILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQN Sbjct: 841 ILCTGKVYYDLLDNRDMRNIADIYLLRIEQLYPFPEDYLIKVLSRFVQAEIVWCQEEPQN 900 Query: 901 MGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK 957 MGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK Sbjct: 901 MGAWTFIEPYLEKVLHSIGADYSRVRYVGRLPSASTAVGHMSRHLEQLSSFIEDALK 957 >gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%) Query: 367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT 426 RS + ++ GD A A QG V E+F ++ L V I++I NNQ T+ S A + T Sbjct: 178 RSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQT 233 Query: 427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEP 486 S S IP V+G D AV + AV++ ++I+++ YR GH+ D Sbjct: 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293 Query: 487 SFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE--AEYKESE 541 ++ +RS+ ++ L+ N+ S+ +L+ + N K + E+ +S+ Sbjct: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350 >gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 358 Score = 26.2 bits (56), Expect = 2.7, Method: Compositional matrix adjust. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 872 YPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV 914 Y FPE + ++R ++ V+ + QN+ W ++E ++ + Sbjct: 191 YHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRAL 233 >gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 26.2 bits (56), Expect = 2.9, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 276 NVLSQIMNKLPRSI-FYEFKGKGPSEKEYSGDVKYH 310 N + ++N + R I FY+F+ K +E+ +GD+ H Sbjct: 474 NKIEDMLNSIVRQISFYDFELKLHTERRSTGDIPTH 509 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 25.4 bits (54), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 471 DIVCYRRFGHNEGDEPSFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWH 530 D++ ++ +E S + + TI ++ + Y +L N SK+ + L++ H Sbjct: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNH 308 Query: 531 KYLEAEYKESESYCPEKL 548 L A + E E+ PE + Sbjct: 309 PSLSAYFDEGENLTPETV 326 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 25.4 bits (54), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 590 LMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI------L 643 + R+ ++ G+ ++W A++ ++C G V +D + G H + L Sbjct: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA----HIVVGTPGRL 135 Query: 644 CDQETGK 650 CD GK Sbjct: 136 CDHIRGK 142 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 25.4 bits (54), Expect = 4.9, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 42 YPLFSFLDENSEEYDNLEDGIASFLKEESVASAVFSQKKSAVESSCSLG 90 +P + FL EN++ + LED F+ S + K +A +++ LG Sbjct: 79 HPGYGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLG 127 >gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 381 Score = 25.0 bits (53), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 766 SPANYFHILRRQ-IYDRSSRPLIMMAPKSLLRHKRVVSSLSDMTCGSVFQAVLSDDAEYH 824 S + +LRRQ I+D +S + ++ +LLR K + S S + GS +L + H Sbjct: 18 SKGRHRQLLRRQDIWDFTSHDYLALSSSTLLREKILSSLDSKIPIGSGGSRLLCGNYNQH 77 >gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 25.0 bits (53), Expect = 6.4, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 212 RDILDKLVRAEGFEKFIDIKYKGAKRFGADGSEVI 246 + I +L R F + + + A RFGADG +VI Sbjct: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVI 152 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 629,503 Number of Sequences: 1233 Number of extensions: 27476 Number of successful extensions: 82 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 19 length of query: 957 length of database: 328,796 effective HSP length: 83 effective length of query: 874 effective length of database: 226,457 effective search space: 197923418 effective search space used: 197923418 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 43 (21.2 bits)