HHsearch alignment for GI: 254781052 and conserved domain: TIGR01936

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.

Probab=91.61  E-value=0.1  Score=30.82  Aligned_cols=53  Identities=28%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             EEEEEEEEECCCCEECCCCEEEEEECCCC--EEEEECCCCCEEEEEEECCCCEEEECCCE
Q ss_conf             79999998268878348974999952762--45666787878999970788885517711
Q gi|254781052|r   34 EATVGTWLKEIGESVEIGEILVELETDKV--TVEVPSPVSGKLHEMSVAKGDTVTYGGFL   91 (436)
Q Consensus        34 Eg~Iv~Wlv~~Gd~V~~gd~i~eVETDKa--~~evesp~~G~l~~i~v~eGd~v~VG~~i   91 (436)
T Consensus        37 ~g~~p~~~v~~GD~V~~G~~L~~---~K~~P~v~fTsPvsG~V~ai--~RG~KR~Llsvv   91 (466)
T TIGR01936        37 EGLRPKMKVRPGDKVKAGQVLFE---DKKNPGVKFTSPVSGEVVAI--NRGAKRVLLSVV   91 (466)
T ss_pred             CCCCCEEEEEECCEEEECCHHHH---HCCCCCCEEECCCCCEEEEE--ECCCCCEEEEEE
T ss_conf             78665067700770100222333---02689856861777569997--418972464788