RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (436 letters) >gnl|CDD|35779 KOG0559, KOG0559, KOG0559, Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]. Length = 457 Score = 393 bits (1010), Expect = e-110 Identities = 195/419 (46%), Positives = 259/419 (61%), Gaps = 41/419 (9%) Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82 + VP ES+ E + WLK++G+ V E + E+ETDK TVEVPSP SG + E+ V G Sbjct: 75 VEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG 134 Query: 83 DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH-----SPSASKLI 137 DTVT G L I A ++P P+ P P + + Sbjct: 135 DTVTPGQKLAKISPGAAPAKG--GASAPAKAE---PKTAPAAAAPPKPSSKPPPKEAAPV 189 Query: 138 AESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFE 197 AES +PS + S + SV Q + SR Sbjct: 190 AESPPAPSSPEPVPA-------------SAKKPSVAQPKPPPSEGATPSR---------- 226 Query: 198 KSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEK 257 SE RVKM+R+R +A+RLKD+QNTAA+L+T+NEV+MS ++ +R +YKD F K Sbjct: 227 --------SERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLK 278 Query: 258 KHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRH 317 KHG+KLGFM F+KAA++ LQ+ VNA IDGD IVY++Y I VAV T KGLVVPVIR+ Sbjct: 279 KHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRN 338 Query: 318 ADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGIL 377 A+ MN +IE+ IA LG++AR G L++ D+ GTFTISNGGV+GSL +PI+NPPQS IL Sbjct: 339 AESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAIL 398 Query: 378 GMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 GMH I+ERP+V GQ+V RPMMY+AL+YDHR++DG+EAVTFL ++KE +EDP + +LDL Sbjct: 399 GMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 >gnl|CDD|30854 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]. Length = 404 Score = 377 bits (969), Expect = e-105 Identities = 181/423 (42%), Positives = 268/423 (63%), Gaps = 25/423 (5%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA +I +P LGE++ E T+ WLK++G+ V+ G++LVE+ETDK T+EVP+P +G L ++ Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60 Query: 79 VAKGDTVTYGGFLGYIVEIARD----EDESIKQNSPNSTANGLPEITDQGFQMPHSPSAS 134 V +GDTV G + I E D + + + + + ++ SP+ Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120 Query: 135 KLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASN 194 +L E+G+ S +KGTG G+I K DV AA++ ++ + Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAAPAPAA--------------- 165 Query: 195 IFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDI 254 + S EERV MSR+R+ +A+R+ +++ T L+ +NEV+M++++++R + K+ Sbjct: 166 ---AAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEE 222 Query: 255 FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDH--IVYKNYCHIGVAVGTDKGLVV 312 FEKK G+KL F+ F KA L++ VNA IDGD IVY Y +IG+AV T +GLVV Sbjct: 223 FEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVV 281 Query: 313 PVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPP 372 PVIR ADK ++ EI +EI L ++AR G L+ ++Q GTFTISN G++GSL+ +PI+NPP Sbjct: 282 PVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPP 341 Query: 373 QSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERF 432 Q ILG+ I+ERP+V G+IV+RPMMYL+LSYDHR++DG EA FLV LKELLEDPER Sbjct: 342 QVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERL 401 Query: 433 ILD 435 +L+ Sbjct: 402 LLE 404 >gnl|CDD|143956 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain). These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 231 Score = 285 bits (733), Expect = 1e-77 Identities = 105/232 (45%), Positives = 157/232 (67%), Gaps = 2/232 (0%) Query: 204 ELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKL 263 E RV +S +R+ +AKR+ +++ T + +EV+++ ++++R K + + G+KL Sbjct: 1 PGEETRVPLSGIRKAIAKRMTESKQTIPHFTLTDEVDVTALLALREELKADAKDE-GLKL 59 Query: 264 GFMGFFTKAASHVLQEIKGVNAEIDGD-HIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322 F+ F KA + L++ +NA DG+ IVYK Y +IG+AV T GL+VPVIR+AD+ + Sbjct: 60 TFLPFLVKAVALALKKFPELNASWDGEAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKS 119 Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382 ++EI +EI L AR G L DLQ GTFTISN G++G +PI+NPPQ ILG+ I Sbjct: 120 LLEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAI 179 Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 ++RP+V +G+IVIR +M L+LS+DHR++DG EA FL LKELLE+PE +L Sbjct: 180 RKRPVVVNGEIVIRKVMTLSLSFDHRVIDGAEAARFLNDLKELLENPELLLL 231 >gnl|CDD|35777 KOG0557, KOG0557, KOG0557, Dihydrolipoamide acetyltransferase [Energy production and conversion]. Length = 470 Score = 190 bits (485), Expect = 5e-49 Identities = 120/452 (26%), Positives = 204/452 (45%), Gaps = 50/452 (11%) Query: 17 RSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 +P+L ++ E + +W K+ G+ + G++L+E+ETDK T++V + G L + Sbjct: 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAK 94 Query: 77 MSVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP----------------- 118 + + +G V G + IVE D+ + K +++ Sbjct: 95 ILIEEGSKDVPVGKPIAIIVE-DEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEA 153 Query: 119 ------EITDQGFQMPH------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166 T Q + + SP A KL E GL S I GTG G+ILK D+ + Sbjct: 154 PSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVG 213 Query: 167 RSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDA 226 + ++ S + S E + +S +R+ +AKRL ++ Sbjct: 214 SGKKKSAKAPKASAPPPAPAAPPVSLPG------------YEDIPVSNMRRVIAKRLLES 261 Query: 227 QNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNA- 285 + T +VN+ +++++R + + +K K+ KAA+ L ++ VN+ Sbjct: 262 KQTIPHYYVTVDVNLDKLLALR---EKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSS 318 Query: 286 EIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMR 345 +D I + I VAV T GL+ P+I++AD + I ++ L ++AR G L Sbjct: 319 WMDELVIRQLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPE 378 Query: 346 DLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM---HKIQERPIVEDGQIVIRPMMYLA 402 + Q GTFT+SN G++G + + I+NPPQ+ IL + + + M + Sbjct: 379 EFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVT 438 Query: 403 LSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 LS DHR+VDG A FL KE LE+PE +L Sbjct: 439 LSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 >gnl|CDD|35778 KOG0558, KOG0558, KOG0558, Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]. Length = 474 Score = 187 bits (477), Expect = 3e-48 Identities = 122/413 (29%), Positives = 209/413 (50%), Gaps = 15/413 (3%) Query: 28 LGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTY 87 +GE + E TV W + G++VE + L E+++DK +V + S GK+ ++ + D Sbjct: 72 IGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKV 131 Query: 88 G-GFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSASKLIAESGLSPSD 146 G + VE ++D E + SP + + + + +P+ +L E+G+ ++ Sbjct: 132 GKPLVDLEVEDSQDSPEDSDE-SPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAE 190 Query: 147 IKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELS 206 + GTGK G++LK DV+ + + V + H AS+ E + Sbjct: 191 VTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLE--------A 242 Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266 ++ V + + + K + +A +E+N ++ +R K+ K+ GIKL FM Sbjct: 243 DKTVPLRGFSRAMVKTMTEALKIPH-FGYVDEINCDSLVKLRQELKE-NAKERGIKLTFM 300 Query: 267 GFFTKAASHVLQEIKGVNAEID--GDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIV 324 FF KAAS L + VN+ D ++I+ K +IGVA+ T++GLVVP I++ ++I Sbjct: 301 PFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIF 360 Query: 325 EIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQE 384 EI +E+ RL G LS DL GTFT+SN G G +SP++ PP+ I + +I++ Sbjct: 361 EIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEK 420 Query: 385 RPIVED-GQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 P G++ +M ++ S DHR++DG F + KE LE+P +L L Sbjct: 421 VPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQL 473 >gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74 Score = 96.3 bits (241), Expect = 1e-20 Identities = 36/74 (48%), Positives = 51/74 (68%) Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 T+I +P LGES+ E T+ WL + G+SVE G++L E+ETDK TVEV +P +G L ++ V Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60 Query: 81 KGDTVTYGGFLGYI 94 +GDTV G + I Sbjct: 61 EGDTVPVGQVIAVI 74 >gnl|CDD|144088 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins. Length = 73 Score = 70.3 bits (173), Expect = 1e-12 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%) Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 T+I P +GESV E T WL ++G+ V+ G++L E+E K+ +E+P+PV+G + E+ V Sbjct: 1 TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59 Query: 81 KGDTVTYGGFLGYI 94 +GDTV G L I Sbjct: 60 EGDTVEVGDPLAKI 73 >gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73 Score = 66.3 bits (162), Expect = 2e-11 Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82 IL+P L + + + TV WLK++G+ V+ G++L E+E K T +V +P SG + ++ V +G Sbjct: 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61 Query: 83 DTVTYGGFLGYI 94 V L I Sbjct: 62 TKVEGDTPLVKI 73 >gnl|CDD|111687 pfam02817, E3_binding, e3 binding domain. This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39 Score = 50.1 bits (121), Expect = 1e-06 Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 126 QMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMA 163 ++ SP+A KL AE G+ S +KGTG G+I K DV+A Sbjct: 2 RVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39 >gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67 Score = 46.6 bits (112), Expect = 1e-05 Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 TV L + G+ VE G+ L LE K+ EV +PV+G + E+ V +GD V G Sbjct: 9 TVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAG 61 >gnl|CDD|30857 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]. Length = 140 Score = 43.9 bits (103), Expect = 8e-05 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 29 GESVNEATVGTWLK---EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85 G V VGT K E+G++V+ G+ L +E K+ E+ +P G + E+ V GD V Sbjct: 70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPV 129 Query: 86 TYGGFLGYI 94 YG L I Sbjct: 130 EYGDPLAVI 138 >gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. Length = 96 Score = 39.4 bits (93), Expect = 0.002 Identities = 13/37 (35%), Positives = 22/37 (59%) Query: 40 WLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 L E+G V+ G+ +E+ K ++ SPVSG++ E Sbjct: 35 ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVE 71 >gnl|CDD|30855 COG0509, GcvH, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]. Length = 131 Score = 34.8 bits (80), Expect = 0.044 Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 L E+G V+ GE L +E+ K +V +PVSG++ E Sbjct: 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVE 81 >gnl|CDD|31909 COG1723, COG1723, Uncharacterized conserved protein [Function unknown]. Length = 331 Score = 33.7 bits (77), Expect = 0.097 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 187 RIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR 243 +II +SN+F K ++S L++ VK+S ++V + + L+ +V++SR Sbjct: 167 KIILRSSNVFTKLAISHALAQS-VKLSVFEESVDNTIDQTKPIPQELARTGKVSLSR 222 >gnl|CDD|110591 pfam01597, GCV_H, Glycine cleavage H-protein. This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. Length = 122 Score = 33.1 bits (76), Expect = 0.17 Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 L E+G V+ GE L +E+ K EV +PVSG++ E++ Sbjct: 38 LPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEK 77 >gnl|CDD|35905 KOG0686, KOG0686, KOG0686, COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms]. Length = 466 Score = 30.0 bits (67), Expect = 1.3 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 156 ILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRL 215 IL+S+++ I +DSH K +++R +S + FE+ + S+ K L Sbjct: 381 ILESELLELI---LEGKISGRIDSHNKILYARDADSENATFERVLPMGKRSQLEAKALLL 437 Query: 216 RQTVAKR 222 R + K Sbjct: 438 RAALLKN 444 >gnl|CDD|33063 COG3252, COG3252, Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]. Length = 314 Score = 29.5 bits (66), Expect = 1.7 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANG 116 +PV+G + D V YGG + V+ + DE E + + P+S + Sbjct: 211 APVAGDDLKAMGRTNDAVLYGGRVYLTVK-SEDELEDLVKAVPSSASED 258 >gnl|CDD|146907 pfam04499, SAPS, SIT4 phosphatase-associated protein. This family includes a conserved region from a group of yeast proteins that associate with the SIT4 phosphatase. This association is required for SIT4's role in G1 cyclin transcription and for bud formation. This family also includes homologous regions from other eukaryotes. Length = 380 Score = 29.1 bits (66), Expect = 2.7 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 13/56 (23%) Query: 223 LKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQ 278 D T IL E D F+ K G +LG+MG T A V++ Sbjct: 298 FTDCNLTQRILEGQKES-------------DEFQAKGGPRLGYMGHLTLIAEEVVK 340 >gnl|CDD|36297 KOG1081, KOG1081, KOG1081, Transcription factor NSD1 and related SET domain proteins [Transcription]. Length = 463 Score = 28.4 bits (63), Expect = 4.0 Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 173 DQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVA 220 +D+ KG +SR +N + ++ + + + RV + RQ A Sbjct: 359 KDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEA 406 >gnl|CDD|38583 KOG3373, KOG3373, KOG3373, Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]. Length = 172 Score = 27.7 bits (61), Expect = 6.0 Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD 83 L E+G V G+ +E+ K E+ SPVSG++ E++ + Sbjct: 87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 >gnl|CDD|32524 COG2377, COG2377, Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]. Length = 371 Score = 27.5 bits (61), Expect = 7.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 129 HSPSASKLIAESGLSPSDIKGTGKRGQ 155 H+ + + L+AE GL P DI+ G GQ Sbjct: 75 HAQAVAALLAEQGLLPRDIRAIGCHGQ 101 >gnl|CDD|111207 pfam02289, MCH, Cyclohydrolase (MCH). Methenyl tetrahydromethanopterin cyclohydrolase EC:3.5.4.27 is involved in methanogenesis in bacteria and archaea, producing methane from carbon monoxide or carbon dioxide. Length = 312 Score = 27.4 bits (61), Expect = 7.6 Identities = 11/49 (22%), Positives = 22/49 (44%) Query: 68 SPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANG 116 +PV + D V YGG + V+ + + + +N P++T+ Sbjct: 210 APVHPDDLQAMGRTNDAVLYGGRVYLYVKSDDADLKELAENLPSTTSED 258 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.133 0.363 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,979,488 Number of extensions: 263249 Number of successful extensions: 601 Number of sequences better than 10.0: 1 Number of HSP's gapped: 588 Number of HSP's successfully gapped: 40 Length of query: 436 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 339 Effective length of database: 4,167,664 Effective search space: 1412838096 Effective search space used: 1412838096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (26.5 bits)