RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide
succinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(436 letters)
>gnl|CDD|180214 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 625 bits (1614), Expect = e-180
Identities = 218/425 (51%), Positives = 286/425 (67%), Gaps = 25/425 (5%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M +I VP+L ESV EAT+ TW K+ G++V+ E+LVE+ETDKV +EVP+P +G L E+
Sbjct: 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60
Query: 79 VAKGDTVTYGGFLGYIVE-------IARDEDESIKQNSPNSTANGLPEITDQGFQMPHSP 131
+GDTVT G LG I E A + +P SP
Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSN---DALSP 117
Query: 132 SASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINS 191
+A KL AE+GL S +KGTGK G++ K DV+AA++ + ++
Sbjct: 118 AARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPA--------------- 162
Query: 192 ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRY 251
A+ + EERV M+RLR+T+A+RL +AQNT A+L+T+NEV+M+ ++ +R +Y
Sbjct: 163 AAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQY 222
Query: 252 KDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLV 311
KD FEKKHG+KLGFM FF KA L+ VNA IDGD IVY NY IG+AVGT +GLV
Sbjct: 223 KDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLV 282
Query: 312 VPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNP 371
VPV+R AD+++ EIE++IA L ++AR G LS+ +L GTFTI+NGGV+GSL+S+PI+NP
Sbjct: 283 VPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINP 342
Query: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPER 431
PQS ILGMHKI+ERP+ +GQIVIRPMMYLALSYDHRI+DGKEAV FLV +KELLEDPER
Sbjct: 343 PQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDPER 402
Query: 432 FILDL 436
+LDL
Sbjct: 403 LLLDL 407
>gnl|CDD|162309 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
dihydrolipoamide acetyltransferase. The seed for this
model includes mitochondrial and Gram-negative bacterial
forms. Mycobacterial candidates are highly derived,
differ in having and extra copy of the lipoyl-binding
domain at the N-terminus. They score below the trusted
cutoff, but above the noise cutoff and above all
examples of dihydrolipoamide acetyltransferase.
Length = 403
Score = 504 bits (1300), Expect = e-143
Identities = 208/422 (49%), Positives = 278/422 (65%), Gaps = 25/422 (5%)
Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
+I VP L ES+ E TV W K++G++V+ E +VE+ETDKV +EVPSP G L E+
Sbjct: 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60
Query: 81 KGDTVTYGGFLGYIVEI------ARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSAS 134
+GDTV G L + E + K+ +P ++A T + SP+A
Sbjct: 61 EGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAA--AAPTAAANRPSLSPAAR 118
Query: 135 KLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASN 194
+L E G+ S + GTG G++ K D++ S+ + + K
Sbjct: 119 RLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPAN--------- 169
Query: 195 IFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDI 254
EERVKM+RLRQ +A+RLK+AQN+ A+L+T+NEV+MS ++ +R RYK+
Sbjct: 170 --------FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE 221
Query: 255 FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPV 314
FEKKHG+KLGFM FF KA L+ VNAEIDGD IVYK+Y I VAV TD+GLVVPV
Sbjct: 222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPV 281
Query: 315 IRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQS 374
+R+AD+M+ +IE+EIA LG++AR G L++ D+ GTFTI+NGGV+GSL+S+PI+NPPQS
Sbjct: 282 VRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQS 341
Query: 375 GILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
ILGMH I+ERP+ +GQI IRPMMYLALSYDHR++DGKEAVTFLV +KELLEDP R +L
Sbjct: 342 AILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLLL 401
Query: 435 DL 436
DL
Sbjct: 402 DL 403
>gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 410 bits (1056), Expect = e-115
Identities = 171/414 (41%), Positives = 248/414 (59%), Gaps = 42/414 (10%)
Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82
I VP++G+S++E TV W K++G+ V+ E++ +ETDKV+V++ +P SG + ++ +G
Sbjct: 47 IKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106
Query: 83 DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSASKLIAESGL 142
DTV G L EI +P+A+
Sbjct: 107 DTVEVGAPL---SEIDTGGAPP-----------------------AAAPAAAAAAKAEKT 140
Query: 143 SPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVS 202
+P K A + + S +A + +
Sbjct: 141 TPEKPK---------------AAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARA 185
Query: 203 EELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIK 262
+ E RV MSR+RQ +A+RLK +QNT A+L+T+NE +MS ++ +R YKD F+KKHG+K
Sbjct: 186 DP-RETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVK 244
Query: 263 LGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322
LGFM F KA++ L+++ VNA IDGD IVY+NY I VAV T GLVVPVIR+ + +
Sbjct: 245 LGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKS 304
Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382
EIE+E+A L +AR L++ D+ GTFTISNGGV+GSL+ +PI+NPPQS ILGMH I
Sbjct: 305 FAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAI 364
Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
++RP+V +IVIRP+MYLAL+YDHR++DG++AVTFL ++K+L+EDP R +LDL
Sbjct: 365 KKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418
>gnl|CDD|183339 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 367 bits (946), Expect = e-102
Identities = 153/433 (35%), Positives = 235/433 (54%), Gaps = 38/433 (8%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M + +P LGE + E + WL ++G++V+ G+ L E+ETDK TVE+PSPV+G + ++
Sbjct: 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60
Query: 79 VAKGDTVTYGGFLGYI----------------VEIARDEDESIKQNSPNSTANGLPEITD 122
V +GD V G + I A + + + + A
Sbjct: 61 VEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAP 120
Query: 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKK 182
SP+ KL E G+ S +KG+G G+I K DV AA + + + + +
Sbjct: 121 AAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAA--- 177
Query: 183 GVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMS 242
+ EERV +S +R+ +AKR+ +++ + +EV+++
Sbjct: 178 --------------AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVT 223
Query: 243 RIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGV 302
++++R + K I G+KL F KA + L++ +NA D D IV K Y +IG+
Sbjct: 224 ALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGI 278
Query: 303 AVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGS 362
AV TD GL+VPVIR ADK ++ E+ REI L +AR G L +LQ GTFTISN G++G
Sbjct: 279 AVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGG 338
Query: 363 LLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRL 422
+PI+NPP+ ILG+ I ERP+V DG+IV+R +M L+LS+DHR++DG +A FL L
Sbjct: 339 DYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKAL 398
Query: 423 KELLEDPERFILD 435
KELLE+P +L+
Sbjct: 399 KELLENPALLLLE 411
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 328 bits (841), Expect = 2e-90
Identities = 187/423 (44%), Positives = 258/423 (60%), Gaps = 64/423 (15%)
Query: 24 LVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD 83
+VP +GES+ + T+ T+LK+ GE V+ E + ++ETDKVT+++ SP SG + E V +GD
Sbjct: 95 VVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD 154
Query: 84 TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITD-------QGFQMPH---SPSA 133
TV G + I++ ED + Q +P+ PE TD + Q P +P A
Sbjct: 155 TVEPGT---KVAIISKSED-AASQVTPSQKI---PETTDPKPSPPAEDKQKPKVESAPVA 207
Query: 134 SKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSAS 193
K A S SP K + K Q+ +
Sbjct: 208 EKPKAPS--SPPPPKQSAKEPQLPPKE--------------------------------- 232
Query: 194 NIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKD 253
E RV M+RLR+ VA RLKD+QNT A+L+T+NEV+M+ ++ +RS+YKD
Sbjct: 233 ------------RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKD 280
Query: 254 IFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVP 313
F +KHG+KLG M F KAA LQ VNA IDGD I+Y++Y I +AVGT KGLVVP
Sbjct: 281 AFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVP 340
Query: 314 VIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQ 373
VIR ADKMN EIE+ I L ++A G +S+ ++ G+FT+SNGGVYGSL+S+PI+NPPQ
Sbjct: 341 VIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQ 400
Query: 374 SGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFI 433
S ILGMH I RP+V G +V RPMMY+AL+YDHR++DG+EAV FL R+K+++EDP+R +
Sbjct: 401 SAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 460
Query: 434 LDL 436
LD+
Sbjct: 461 LDI 463
>gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 321 bits (825), Expect = 2e-88
Identities = 148/436 (33%), Positives = 227/436 (52%), Gaps = 28/436 (6%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
++ VP +GE E V WL ++G++VE + L+ +ETDK T+E+PSPV+G + E+ V
Sbjct: 119 VVEVKVPDIGEIT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKV 177
Query: 80 AKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTA-------------------NGLPEI 120
GD V+ G L ++E+A + + + A
Sbjct: 178 KVGDKVSVGSLL-VVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Query: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180
G SP+ +L E G+ S +KGTGK+G+I K DV A + + S+ + +
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSA--AAAAAAA 294
Query: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240
+ K S+ E +SR+++ A L + T ++ ++E +
Sbjct: 295 AAAAGGGGLGLLPW--PKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD 352
Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKNYC 298
++ + ++R + K EK G+KL + FF KA L+E NA +D GD + YK Y
Sbjct: 353 ITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYF 411
Query: 299 HIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGG 358
+IG AV T GLVVPVI+ DK +++EI REIA L ++AR G L D+Q G FTIS+ G
Sbjct: 412 NIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLG 471
Query: 359 VYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTF 418
G +PI+N P+ ILG+ K Q +P+ + + V R M+ L+LSYDHR++DG A F
Sbjct: 472 GIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARF 531
Query: 419 LVRLKELLEDPERFIL 434
LK+LL DP R +L
Sbjct: 532 TNYLKQLLADPRRMLL 547
Score = 81.8 bits (203), Expect = 3e-16
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA + VP +GE V E V WL + G++VE + LV +ETDK T+E+PSP +G + E+
Sbjct: 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59
Query: 79 VAKGDTVTYGGFLGYIVEIARDED 102
V GDTV+ GG L ++E A
Sbjct: 60 VKVGDTVSVGGLL-AVIEAAGAAA 82
>gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 264 bits (678), Expect = 2e-71
Identities = 122/442 (27%), Positives = 214/442 (48%), Gaps = 41/442 (9%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
+ VP +G +E V + ++G+ VE + L+ +E DK ++EVP+P +G + E+ V
Sbjct: 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKV 263
Query: 80 AKGDTVTYGGFLGYIVEIARDEDESI-----------------------KQNSPNSTANG 116
GD V G I R E E +P + A G
Sbjct: 264 NVGDKVKTGSL------IMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEG 317
Query: 117 LPEITDQGFQMPH-SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQS 175
E + H +P +L E G++ + +KGTG++G+ILK DV A + + + +
Sbjct: 318 KSEFAEND-AYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAA 376
Query: 176 TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILST 235
+ G ++ F K EE V++ R+++ L ++
Sbjct: 377 PAAAAAGGGGPGLLPWPKVDFSKFGEIEE-----VELGRIQKISGANLHRNWVMIPHVTQ 431
Query: 236 YNEVNMSRIISIRSRYKDI-FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI--DGDHI 292
+++ +++ + + R + ++K G+K+ + F KA + L+++ N+ + DG +
Sbjct: 432 FDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRL 491
Query: 293 VYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTF 352
K Y +IG+AV T GLVVPV + +K I+E+ RE+ + ++AR G L+ D+Q G F
Sbjct: 492 TLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCF 551
Query: 353 TISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDG 412
TIS+ G G+ +PI+N P+ ILG+ K P+ + R M+ L+LSYDHR++DG
Sbjct: 552 TISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDG 611
Query: 413 KEAVTFLVRLKELLEDPERFIL 434
+ F+ + + L D R +L
Sbjct: 612 ADGARFITIINDRLSDIRRLVL 633
Score = 72.7 bits (179), Expect = 2e-13
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA +I VP +G +E V L ++G+ VE + L+ +E DK ++EVPSP +G + E+
Sbjct: 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58
Query: 79 VAKGDTVTYGG 89
V GD V G
Sbjct: 59 VKVGDKVETGA 69
Score = 68.5 bits (168), Expect = 4e-12
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
A + VP +G +E V L ++G++VE + L+ +E DK ++EVP+P +G + E+ V
Sbjct: 105 AKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKV 162
Query: 80 AKGDTVTYG 88
GD V+ G
Sbjct: 163 NVGDKVSTG 171
>gnl|CDD|131973 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 590
Score = 251 bits (641), Expect = 3e-67
Identities = 156/451 (34%), Positives = 233/451 (51%), Gaps = 46/451 (10%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
AT I +P LGESV E T+ WLK +G+ +E+ E ++E+ TDKV E+PSPV+G + E+
Sbjct: 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILA 194
Query: 80 AKGDTVTYGGFLGYI----------------------------VEIARDEDESIKQNSPN 111
+ DTV G + I + +DE + + P
Sbjct: 195 EEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPE 254
Query: 112 STANGLPEITDQGFQMPHS-------PSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164
+ E +S P KL AE G+ + +KGTG G+I K DV+AA
Sbjct: 255 AEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAA 314
Query: 165 ISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224
++++ + ++ + SAS K+ L K +R+R+ AK+ +
Sbjct: 315 AEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKA----HLRGTTQKANRIREITAKKTR 370
Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284
+A +A L+ +EV+M++I ++R+R K F +K G+ L F+ FF KA L+ VN
Sbjct: 371 EALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVN 430
Query: 285 AEIDGD--HIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHL 342
A + D I Y H+G AV TD GL+ PVI +A +++ EI + IA + AR G L
Sbjct: 431 ASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKL 490
Query: 343 SMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIV---EDG--QIVIRP 397
DL GTFTI+N G G+L +PIL PPQ+ ILG I +RP V EDG I IR
Sbjct: 491 KPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQ 550
Query: 398 MMYLALSYDHRIVDGKEAVTFLVRLKELLED 428
M +L L+YDH+++DG +A FL +K+ LE+
Sbjct: 551 MCHLPLTYDHQLIDGADAGRFLTTIKDRLEE 581
Score = 79.4 bits (195), Expect = 2e-15
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA + +P+LGESV E T+ WLK G++VE+ E L+E+ TDKV E+PSP +G + E+
Sbjct: 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIK 60
Query: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPE 119
+ DTV GG + I E + S + + +S A PE
Sbjct: 61 AEEDDTVDIGGEIAIIGE---AGEASAEAGAEDSAAAAEPE 98
>gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model.
Length = 546
Score = 213 bits (544), Expect = 7e-56
Identities = 125/452 (27%), Positives = 214/452 (47%), Gaps = 44/452 (9%)
Query: 13 EEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSG 72
S ++ VP +G + + TV L ++G++V + L+ LE+DK ++EVP+P SG
Sbjct: 109 AAGQSSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASG 167
Query: 73 KLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP-------------- 118
+ + V GD+V G + + +A + + A P
Sbjct: 168 VVKSVKVKVGDSVPTGDLI-LTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226
Query: 119 ---------EITDQGFQMPH-SPSASKLIAESGLSPSDIKGTGKRGQILKSDVM----AA 164
T ++ H +P+ +L E G+ S +KGTG +G+IL+ DV
Sbjct: 227 KAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEP 286
Query: 165 ISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224
R++++ + G + + F K E V MSR+R+ L
Sbjct: 287 SVRAQAAAASAA------GGAPGALPWPNVDFSKFG-----EVEEVDMSRIRKISGANLT 335
Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284
++ +++ +++ + + R + EK+ G+KL + KA + L++ N
Sbjct: 336 RNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKE-GVKLTVLHILMKAVAAALKKFPKFN 394
Query: 285 AEID--GDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHL 342
A +D G+ ++ K Y +IGVAV T GL+VPVI+ D+ I E+ E++ L ++AR G L
Sbjct: 395 ASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKL 454
Query: 343 SMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLA 402
+ ++Q FTIS+ G G +PI+N P+ ILG+ K P+ + R M+ L+
Sbjct: 455 TPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLS 514
Query: 403 LSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
LSYDHR++DG +A F + E L D R +L
Sbjct: 515 LSYDHRVIDGADAARFTTYICESLADIRRLLL 546
Score = 58.7 bits (142), Expect = 3e-09
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
T+I VP +G++ E V L + G+ VE G+ L+ LE+DK ++EVPS +G + E+ V
Sbjct: 1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVK 59
Query: 81 KGDTVTYGGFLGYI--VEIARDEDESIKQNSPNSTANG 116
GDT+ GG + + A+ + E+ K+ +P TA
Sbjct: 60 VGDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGA 97
>gnl|CDD|183340 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed.
Length = 306
Score = 204 bits (521), Expect = 3e-53
Identities = 102/303 (33%), Positives = 173/303 (57%), Gaps = 8/303 (2%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRII 189
+P A L + G+ S +KG+G+ G+IL DV I +S+ + S
Sbjct: 5 TPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAAS------VSSA 58
Query: 190 NSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRS 249
A+ ++ +L +R K++ +R+ +A+ + ++ + A ++ NE++M+++ +R
Sbjct: 59 QQAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRK 118
Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKNYCHIGVAVGTD 307
KD K G+KL F+ F KA L+E A+ D +VY + ++G+AV T+
Sbjct: 119 SVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTE 178
Query: 308 KGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSP 367
GL+VPVI++A K++IVEI +EI+RL + AR + +++ G+FTI+N G GSL P
Sbjct: 179 AGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVP 238
Query: 368 ILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLE 427
++N P+ I G+ I ++ IV++GQIV +M+L ++ DHR +DG F R+KELLE
Sbjct: 239 VINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLE 298
Query: 428 DPE 430
PE
Sbjct: 299 KPE 301
>gnl|CDD|162311 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score.
Length = 435
Score = 199 bits (507), Expect = 1e-51
Identities = 121/453 (26%), Positives = 207/453 (45%), Gaps = 58/453 (12%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
KI +P+L ++ + WLK+ G+ V G+++ E+ETDK T+E + G L ++ V +
Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60
Query: 82 G-DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEIT------------------- 121
G V + +VE D +N ++ P+ +
Sbjct: 61 GTKDVPVNKPIAVLVEEKEDV-ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQK 119
Query: 122 --------------DQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167
+ G ++ SP A KL E G+ S + G+G G+I+K D+ + + +
Sbjct: 120 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQ 179
Query: 168 SESSVDQS---TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224
S +S + T + KK + S E V +S +R+ +AKRL
Sbjct: 180 SPASANFQAAATTPATKKAA---------------APVSTGSYEDVPLSNIRKIIAKRLL 224
Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284
+++ T E N+ +++++R + + KL F KA++ L+E+ N
Sbjct: 225 ESKQTIPHYYVSIECNVDKLLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEAN 282
Query: 285 AEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSM 344
+ + I I VAV T GL+ P++R+AD + I EI L + AR L
Sbjct: 283 SSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKP 342
Query: 345 RDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIV---EDGQIVIRPMMYL 401
+ Q GTFTISN G++G + I+NPPQ+ IL + +++ +V E+ + +M +
Sbjct: 343 EEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSV 402
Query: 402 ALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
LS DHR++DG FL K+ LE+P +L
Sbjct: 403 TLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase;
Provisional.
Length = 347
Score = 177 bits (451), Expect = 4e-45
Identities = 98/302 (32%), Positives = 166/302 (54%), Gaps = 13/302 (4%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRII 189
SP A ++ E ++ +I+GTG RG+I+K DV+A + + + + +K
Sbjct: 52 SPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEK------- 104
Query: 190 NSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRS 249
+ + + E+ ER+ M+ +R+ +A+R+ ++ TA + EV+M+ ++++R
Sbjct: 105 --VEEVPDNVTPYGEI--ERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRK 160
Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI--DGDHIVYKNYCHIGVAVGTD 307
+ + + G K + A L + +NA + DG I+ NY ++ +AVG D
Sbjct: 161 KVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMD 220
Query: 308 KGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSP 367
GL+ PV+ +A+KM++ E+ + G L+ +LQN TFTISN G++G P
Sbjct: 221 NGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGP 280
Query: 368 ILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLE 427
I+N P S ILG+ E+P+V +G+IVIRP+M L L+ DHR+VDG F+ LKEL+E
Sbjct: 281 IINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIE 340
Query: 428 DP 429
P
Sbjct: 341 TP 342
>gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 176 bits (449), Expect = 8e-45
Identities = 107/418 (25%), Positives = 202/418 (48%), Gaps = 19/418 (4%)
Query: 29 GESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
GE + E + W + G+ VE + L E+++DK T+E+ S GK+ +++ + GD V G
Sbjct: 7 GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVG 66
Query: 89 -GFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH----SPSASKLIAESGLS 143
L +VE ++ +S+ +D+ +P+ L + G+
Sbjct: 67 ETLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGID 126
Query: 144 PSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSE 203
+DI GTGK G++LK DV+ ++ D S+ + S S + +
Sbjct: 127 LNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVS-----TPTEQ 181
Query: 204 ELSEERVKMSRLRQTVAKRLKDAQNTAAILSTY--NEVNMSRIISIRSRYKDIFEKKHGI 261
++ + + ++ + K + A A + + E+N+ ++ +++ +++ +
Sbjct: 182 SYEDKTIPLRGFQRAMVKTMTAA---AKVPHFHYVEEINVDALVELKASFQEN-NTDPTV 237
Query: 262 KLGFMGFFTKAASHVLQEIKGVNAEIDGD--HIVYKNYCHIGVAVGTDKGLVVPVIRHAD 319
K F+ F K+ S L + +N+ + + I K +IGVA+ T+ GLVVP I++
Sbjct: 238 KHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQ 297
Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379
++++EI +E++RL A L+ D+ GT T+SN G G SP+LN P+ I+ +
Sbjct: 298 SLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIAL 357
Query: 380 HKIQERP-IVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
+IQ+ P V+DG + +M + + DHR++DG F K +E PE +L +
Sbjct: 358 GRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLHM 415
>gnl|CDD|178345 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 168 bits (428), Expect = 2e-42
Identities = 130/451 (28%), Positives = 209/451 (46%), Gaps = 63/451 (13%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
+I +PSL ++ E + WLK+ G+ V GE+L E+ETDK TVE+ G L ++
Sbjct: 114 EIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173
Query: 82 GDTVTYGGFLGYIVEIARDEDESI---KQNSPNSTANGLP------------EITDQGFQ 126
G +G ++ I +E+E I K P+S+A E ++
Sbjct: 174 GAKEIK---VGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPAS 230
Query: 127 MPH------------------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRS 168
P SP A KL ++ + S IKGTG G+I+K+D+
Sbjct: 231 SPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADI------- 283
Query: 169 ESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQN 228
+ + S KG A+ S + L + +++R+ A RL ++
Sbjct: 284 -----EDYLASGGKG--------ATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQ 330
Query: 229 TAAILSTYNEVN--MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286
T I Y V+ + +++++RS+ + E G K+ KAA+ L+++ N+
Sbjct: 331 T--IPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSS 388
Query: 287 IDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRD 346
D+I + +I VAV T+ GL VPV++ ADK + I E+ +L ++AR L D
Sbjct: 389 WTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPED 448
Query: 347 LQNGTFTISN-GGVYGSLLSSPILNPPQSGILGMHKIQER--PIVEDGQIVIRPMMYLAL 403
+ GTFT+SN GG +G I+NPPQS IL + ++R P Q M + L
Sbjct: 449 YEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTL 508
Query: 404 SYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
S DHR++DG +L K +E+PE +L
Sbjct: 509 SCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 78.4 bits (194), Expect = 3e-15
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
T I +P G S+ E V WL + G+ VE G+ L+++ETDK+T EV +P +G L
Sbjct: 1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV 60
Query: 79 VAKGDTVTYGGFLGYIVE 96
+G+T+ G L + +
Sbjct: 61 AQEGETLPVGALLAVVAD 78
>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 71.5 bits (176), Expect = 5e-13
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 285 AEIDGD-HIVYKNYCHIGVAV------GTDKGLVVPVIRHADKMNIVEIEREIARLGREA 337
AE+DG +V + ++G+A+ G+ + LVVP I+ A+ M+ + + R A
Sbjct: 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGS-RQLVVPAIKGAETMDFAQFWAAYEDIVRRA 253
Query: 338 RAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQ---------ERPIV 388
R G L+ D Q T +++N G G++ S P L Q I+G+ ++ E +
Sbjct: 254 RDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLA 313
Query: 389 EDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERF 432
E G I +M L +YDHRI+ G E+ FL + +LL + F
Sbjct: 314 ELG---ISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLGEDGF 354
>gnl|CDD|183363 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 55.7 bits (135), Expect = 2e-08
Identities = 26/64 (40%), Positives = 44/64 (68%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA +IL+P+L ++ E T+ WLK+ G+ V+ G+++ E+ETDK T+EV + G L ++
Sbjct: 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL 60
Query: 79 VAKG 82
V +G
Sbjct: 61 VPEG 64
>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea.
Length = 1201
Score = 44.3 bits (105), Expect = 6e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
E+G+ VE G+ LV LE K+ + V +PV+GK+ ++ GD V G
Sbjct: 1149 EVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAG 1194
>gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 44.1 bits (105), Expect = 7e-05
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 9 TGILEEKVRSMATKILVPSLGESVNEATV-----GTWLK---EIGESVEIGEILVELETD 60
G+ EE V +I+V + V GT +K + G+ V+ G+ ++ LE
Sbjct: 497 DGMPEEVVVEPLKEIVVGGRPRASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556
Query: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
K+ E+ +PV G + E+ V +GD V G
Sbjct: 557 KMENEIQAPVDGTVKEILVKEGDRVNPG 584
>gnl|CDD|162205 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane.
Length = 582
Score = 40.2 bits (94), Expect = 0.001
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 18 SMATKILVPSLGESVNEATVGTWLKEI---GESVEIGEILVELETDKVTVEVPSPVSGKL 74
S T G V G+ +K G++V GE+L+ LE K+ E+ + +G +
Sbjct: 506 SGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTV 565
Query: 75 HEMSVAKGDTVTYGGFL 91
E+ V GD V+ G L
Sbjct: 566 REILVKVGDAVSVGQVL 582
>gnl|CDD|184472 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 39.9 bits (94), Expect = 0.001
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 ATKILVPSLGESVNEATVGTWLK---EIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
A + GE V G K G++V G++L+ LE K+ E+ + +G +
Sbjct: 515 AAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRG 574
Query: 77 MSVAKGDTVTYG 88
++V +GD V G
Sbjct: 575 IAVKEGDAVAVG 586
>gnl|CDD|167014 PRK00624, PRK00624, glycine cleavage system protein H;
Provisional.
Length = 114
Score = 37.1 bits (86), Expect = 0.010
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85
L +G + GE+LV LE+ K +EV SPVSG++ E++ A D +
Sbjct: 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDI 83
>gnl|CDD|132121 TIGR03077, not_gcvH, glycine cleavage protein H-like protein,
Chlamydial. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed the Chlamydial
GcvH homolog, so far always seen as part of a two-gene
operon, downstream of a member of the uncharacterized
protein family TIGR03076. The function of this protein
is unknown.
Length = 110
Score = 36.8 bits (85), Expect = 0.010
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80
L +G S + GE+LV LE+ K +EV SPVSG++ E+++A
Sbjct: 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA 76
>gnl|CDD|168146 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 33.7 bits (77), Expect = 0.095
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
G+ V++G+ L+ LE K+ E+P+P G + ++ V +GDTV G
Sbjct: 103 GQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTG 146
>gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 33.5 bits (77), Expect = 0.096
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 283 VNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIR---------HADKMNIVEIEREIARL 333
+A + ++ ++ H+ A D V P R A N VE+++ A L
Sbjct: 303 RDAVVSSGATIH-SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK--AVL 359
Query: 334 GREARAGHLS 343
G+ A+A HL+
Sbjct: 360 GKGAKANHLT 369
>gnl|CDD|180522 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 155
Score = 33.2 bits (77), Expect = 0.14
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
E+G++V+ G+ L +E KV E+ + SG + E+ V G V +G
Sbjct: 103 EVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFG 148
>gnl|CDD|179245 PRK01202, PRK01202, glycine cleavage system protein H;
Provisional.
Length = 127
Score = 31.7 bits (73), Expect = 0.38
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGK 73
L E+G+ V+ GE +E+ K ++ +PVSG+
Sbjct: 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGE 76
>gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated.
Length = 80
Score = 31.1 bits (71), Expect = 0.54
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 42 KEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
E+G++V G+++ +E K EV + +G++ E V G+ V G
Sbjct: 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAG 72
>gnl|CDD|183211 PRK11578, PRK11578, macrolide transporter subunit MacA;
Provisional.
Length = 370
Score = 30.9 bits (70), Expect = 0.75
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
V+V + VSG+L +SVA GD V LG I
Sbjct: 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 92
>gnl|CDD|148013 pfam06152, Phage_min_cap2, Phage minor capsid protein 2. Family of
related phage minor capsid proteins.
Length = 361
Score = 30.1 bits (68), Expect = 1.0
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 157 LKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLR 216
L + I++ + V + + K +II ++ ++
Sbjct: 60 LNKQNIKLIAK-YTGVAEEAITRVIKNAGLKIIKDIDKQLSEALNKGLGADPESNFQ--- 115
Query: 217 QTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHG 260
V K L Q A S N VN + + + + Y+DI K
Sbjct: 116 TIVDKVLNAYQRQA--WSDLNLVNQTLLSTAQRAYQDIINKTTA 157
>gnl|CDD|161657 TIGR00375, TIGR00375, conserved hypothetical protein TIGR00375.
The member of this family from Methanococcus jannaschii,
MJ0043, is considerably longer and appears to contain an
intein N-terminal to the region of homology.
Length = 374
Score = 30.3 bits (68), Expect = 1.1
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 239 VNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYC 298
+ + RI+ +SR K G++L + + + I E+DG I Y++
Sbjct: 17 LTLDRILVEQSRLK-------GLELLGIIDCHS---PLEEGISSGKRELDGGGIRYRSEL 66
Query: 299 HI 300
I
Sbjct: 67 SI 68
>gnl|CDD|185302 PRK15404, PRK15404, leucine ABC transporter subunit
substrate-binding protein LivK; Provisional.
Length = 369
Score = 30.0 bits (68), Expect = 1.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 101 EDESIKQNSPNSTANGLPEITDQGFQM---------PHSPSASKLIAE 139
EDE I +P +TA PE+T +G+Q+ P+A+K I E
Sbjct: 113 EDEGILMITPAATA---PELTARGYQLIFRTIGLDSDQGPTAAKYILE 157
>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin
carboxyl carrier protein subunit; Provisional.
Length = 71
Score = 29.4 bits (66), Expect = 1.9
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
A+V + G+ + G+ LV LE+ K+ + V + V+G + ++SV+ GD + G + I
Sbjct: 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70
>gnl|CDD|152285 pfam11849, DUF3369, Domain of unknown function (DUF3369). This
domain is functionally uncharacterized. This domain is
found in bacteria. This presumed domain is about 170
amino acids in length.
Length = 173
Score = 29.4 bits (67), Expect = 2.0
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 161 VMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSV 201
V +A+ RS D T++ ++G +II++++N+F S+
Sbjct: 1 VYSAL-RSYR--DICTIEKSRRG-LEKIIDASANLFSLRSL 37
>gnl|CDD|132352 TIGR03309, matur_yqeB, selenium-dependent molybdenum hydroxylase
system protein, YqeB family. Members of this protein
family are probable accessory proteins for the
biosynthesis of enzymes with labile selenium-containing
centers, different from selenocysteine-containing
proteins.
Length = 256
Score = 29.2 bits (66), Expect = 2.2
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 39 TWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE-MSVAKG 82
T K IG+SV+ G+++ + V + + G +HE ++V +G
Sbjct: 176 TPTKAIGDSVKKGDVIATVGDVPVVAPIDGLLRGLIHEGLTVTEG 220
>gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set.
Length = 515
Score = 28.7 bits (64), Expect = 2.8
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 174 QSTVDSHKKGVFSRIINSASN-------------IFEKSSVSEELSEERVKMSRLRQTVA 220
Q TVD K + ++ +N A N + K E L E K +A
Sbjct: 391 QYTVDDQKDKLINKRLNCARNWIRKYAPEDFKFSLRSKFDNMEILEENSKKAIN---ELA 447
Query: 221 KRLKDAQNTAA-----ILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLG 264
+ LK A I E + ++ ++ YK + K++G KLG
Sbjct: 448 EFLKKNFEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPKLG 496
>gnl|CDD|150625 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 716
Score = 28.5 bits (64), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 347 LQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379
L +G + + G Y ++LS IL P S ILG+
Sbjct: 240 LMSGIWDMDLPGNYNAVLSIVILTPIYSIILGL 272
>gnl|CDD|152498 pfam12063, DUF3543, Domain of unknown function (DUF3543). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 217 to 291 amino acids in length. This domain is
found associated with pfam00069. This domain has a
single completely conserved residue A that may be
functionally important.
Length = 226
Score = 28.4 bits (64), Expect = 3.7
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 199 SSVSEELSEER----VKMSRLRQ---TVAKRLKDAQNTAAILSTYNEVNMSRIIS-IRSR 250
S LSEE VK L +A ++N S N VN +++ +R R
Sbjct: 59 PDASVSLSEEALVLYVKALSLLSKAMDIASAWWASKNGQLKPS--NRVN--QVVQWLRER 114
Query: 251 YKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286
+ + EK ++L F GV AE
Sbjct: 115 FNECLEKAEFLRLKLQRFLPDDHPS-HPGSSGVTAE 149
>gnl|CDD|139048 PRK12538, PRK12538, RNA polymerase sigma factor; Provisional.
Length = 233
Score = 28.3 bits (63), Expect = 3.7
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 208 ERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMS 242
ER ++S L + +RL + Q A ILS Y+E NMS
Sbjct: 157 ERNELSDLLEAAMQRLPEQQRIAVILS-YHE-NMS 189
>gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.3 bits (64), Expect = 3.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 198 KSSVSEELSEERVKMS--RLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSR 250
K EE E +S +L +A+ L QN L+ YN S+++S++++
Sbjct: 107 KDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN----SQLVSLQTQ 157
>gnl|CDD|179602 PRK03598, PRK03598, putative efflux pump membrane fusion protein;
Provisional.
Length = 331
Score = 28.4 bits (64), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 70 VSGKLHEMSVAKGDTVTYGGFLG 92
V G+L ++V +GD V G LG
Sbjct: 50 VGGRLASLAVDEGDAVKAGQVLG 72
>gnl|CDD|147814 pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI).
This family consists of several Proteobacterial
phosphonate metabolism protein (PhnI) sequences.
Bacteria that use phosphonates as a phosphorus source
must be able to break the stable carbon-phosphorus bond.
In Escherichia coli phosphonates are broken down by a
C-P lyase that has a broad substrate specificity. The
genes for phosphonate uptake and degradation in E. coli
are organized in an operon of 14 genes, named phnC to
phnP. Three gene products (PhnC, PhnD and PhnE) comprise
a binding protein-dependent phosphonate transporter,
which also transports phosphate, phosphite, and certain
phosphate esters such as phosphoserine; two gene
products (PhnF and PhnO) may have a role in gene
regulation; and nine gene products (PhnG, PhnH, PhnI,
PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably
comprise a membrane-associated C-P lyase enzyme complex.
Length = 356
Score = 28.3 bits (64), Expect = 4.4
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 26 PSLGE-SVNEATVGTWLKEIGESVEIGEILV 55
P +GE V V E+G +VEIGEI V
Sbjct: 222 PFVGELRVGYVPVEIPHPELGFAVEIGEIEV 252
>gnl|CDD|129622 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. The gene name is accB or fabE.
Length = 156
Score = 28.3 bits (63), Expect = 4.7
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
E+G+ V+ G+I+ +E K+ E+ + V+GK+ E+ V G V YG
Sbjct: 104 EVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYG 149
>gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair.
Length = 563
Score = 28.2 bits (63), Expect = 4.9
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 160 DVMAAISRSESSVDQ-STVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQT 218
+V+ + + +DQ D + + + + EEL + V +S +R+
Sbjct: 326 EVLEYAEKIKEELDQLDDSDESLEALEEEV----------DKLEEELDKAAVALSLIRRK 375
Query: 219 VAKRLKDAQNTAAILSTYNEVNMSRIISIRSR 250
A+RL A+ L + I++
Sbjct: 376 AAERL--AKRVEQELKALAMEKAEFTVEIKTS 405
>gnl|CDD|178217 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 27.9 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV 293
R +F+ HG+K F +A + +++I+G A D D IV
Sbjct: 86 RENALFQDYHGLKS-----FRQAMASFMEQIRGGKARFDPDRIV 124
>gnl|CDD|179024 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase;
Validated.
Length = 343
Score = 27.8 bits (63), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 291 HIVYKNYCHIGVAVGTDKGLVV 312
+ N+C IG AV G +V
Sbjct: 283 SVRGSNFCDIGFAVDERTGRLV 304
>gnl|CDD|132378 TIGR03335, F390_ftsA, coenzyme F390 synthetase. This enzyme,
characterized in Methanobacterium thermoautotrophicum
and found in several other methanogens, modifies
coenzyme F420 by ligation of AMP (or GMP) from ATP (or
GTP). On F420, it activates an aromatic hydroxyl group,
which is unusual chemistry for an adenylyltransferase.
This enzyme name has been attached to numbers of
uncharacterized genes likely to instead act as
phenylacetate CoA ligase, based on proximity to
predicted indolepyruvate ferredoxin oxidoreductase
(1.2.7.8) genes. The enzyme acts during transient
exposure of the organism to oxygen.
Length = 445
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 129 HSPSASKLIAESGLSPSDIK 148
HSP K E+ +SPSDIK
Sbjct: 32 HSPFYKKWFQENNISPSDIK 51
>gnl|CDD|163506 TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a propeptide region
related to nitrile hydratase. We designate the class of
bacteriocin as Nitrile Hydratase Propeptide Microcin, or
NHPM. This family, therefore, is designated as NHPM
bacteriocin system secretion protein. Some but not all
NHPM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters.
Length = 421
Score = 27.5 bits (61), Expect = 7.0
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 49 EIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
EI E+ +L + + S SG++ E++ G V G
Sbjct: 242 EIEELENKLN---LNTRIVSQHSGRVIELNYTPGQLVAAG 278
>gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional.
Length = 852
Score = 27.4 bits (61), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 8 NTGILEEKVRSMATKILVPSL 28
N+GIL+ V S ATKI +P++
Sbjct: 735 NSGILDVIVESTATKIFLPNV 755
>gnl|CDD|100616 PRK00611, PRK00611, putative disulfide oxidoreductase; Provisional.
Length = 135
Score = 27.1 bits (60), Expect = 8.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDG 289
+ I+ I + +D K + + L +GF LQEI G+ +I G
Sbjct: 49 LVVILGIAAYREDSSIKIYALPLALVGFGIAIYQVCLQEIPGMTLDICG 97
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.133 0.363
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,040,934
Number of extensions: 463056
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 75
Length of query: 436
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 340
Effective length of database: 3,920,105
Effective search space: 1332835700
Effective search space used: 1332835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.7 bits)