RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (436 letters) >gnl|CDD|180214 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated. Length = 407 Score = 625 bits (1614), Expect = e-180 Identities = 218/425 (51%), Positives = 286/425 (67%), Gaps = 25/425 (5%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M +I VP+L ESV EAT+ TW K+ G++V+ E+LVE+ETDKV +EVP+P +G L E+ Sbjct: 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60 Query: 79 VAKGDTVTYGGFLGYIVE-------IARDEDESIKQNSPNSTANGLPEITDQGFQMPHSP 131 +GDTVT G LG I E A + +P SP Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSN---DALSP 117 Query: 132 SASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINS 191 +A KL AE+GL S +KGTGK G++ K DV+AA++ + ++ Sbjct: 118 AARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPA--------------- 162 Query: 192 ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRY 251 A+ + EERV M+RLR+T+A+RL +AQNT A+L+T+NEV+M+ ++ +R +Y Sbjct: 163 AAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQY 222 Query: 252 KDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLV 311 KD FEKKHG+KLGFM FF KA L+ VNA IDGD IVY NY IG+AVGT +GLV Sbjct: 223 KDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLV 282 Query: 312 VPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNP 371 VPV+R AD+++ EIE++IA L ++AR G LS+ +L GTFTI+NGGV+GSL+S+PI+NP Sbjct: 283 VPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINP 342 Query: 372 PQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPER 431 PQS ILGMHKI+ERP+ +GQIVIRPMMYLALSYDHRI+DGKEAV FLV +KELLEDPER Sbjct: 343 PQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDPER 402 Query: 432 FILDL 436 +LDL Sbjct: 403 LLLDL 407 >gnl|CDD|162309 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. Length = 403 Score = 504 bits (1300), Expect = e-143 Identities = 208/422 (49%), Positives = 278/422 (65%), Gaps = 25/422 (5%) Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 +I VP L ES+ E TV W K++G++V+ E +VE+ETDKV +EVPSP G L E+ Sbjct: 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60 Query: 81 KGDTVTYGGFLGYIVEI------ARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSAS 134 +GDTV G L + E + K+ +P ++A T + SP+A Sbjct: 61 EGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAA--AAPTAAANRPSLSPAAR 118 Query: 135 KLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASN 194 +L E G+ S + GTG G++ K D++ S+ + + K Sbjct: 119 RLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPAN--------- 169 Query: 195 IFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDI 254 EERVKM+RLRQ +A+RLK+AQN+ A+L+T+NEV+MS ++ +R RYK+ Sbjct: 170 --------FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE 221 Query: 255 FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPV 314 FEKKHG+KLGFM FF KA L+ VNAEIDGD IVYK+Y I VAV TD+GLVVPV Sbjct: 222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPV 281 Query: 315 IRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQS 374 +R+AD+M+ +IE+EIA LG++AR G L++ D+ GTFTI+NGGV+GSL+S+PI+NPPQS Sbjct: 282 VRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQS 341 Query: 375 GILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 ILGMH I+ERP+ +GQI IRPMMYLALSYDHR++DGKEAVTFLV +KELLEDP R +L Sbjct: 342 AILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLLL 401 Query: 435 DL 436 DL Sbjct: 402 DL 403 >gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional. Length = 418 Score = 410 bits (1056), Expect = e-115 Identities = 171/414 (41%), Positives = 248/414 (59%), Gaps = 42/414 (10%) Query: 23 ILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKG 82 I VP++G+S++E TV W K++G+ V+ E++ +ETDKV+V++ +P SG + ++ +G Sbjct: 47 IKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106 Query: 83 DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPHSPSASKLIAESGL 142 DTV G L EI +P+A+ Sbjct: 107 DTVEVGAPL---SEIDTGGAPP-----------------------AAAPAAAAAAKAEKT 140 Query: 143 SPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVS 202 +P K A + + S +A + + Sbjct: 141 TPEKPK---------------AAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARA 185 Query: 203 EELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIK 262 + E RV MSR+RQ +A+RLK +QNT A+L+T+NE +MS ++ +R YKD F+KKHG+K Sbjct: 186 DP-RETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVK 244 Query: 263 LGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322 LGFM F KA++ L+++ VNA IDGD IVY+NY I VAV T GLVVPVIR+ + + Sbjct: 245 LGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKS 304 Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382 EIE+E+A L +AR L++ D+ GTFTISNGGV+GSL+ +PI+NPPQS ILGMH I Sbjct: 305 FAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAI 364 Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 ++RP+V +IVIRP+MYLAL+YDHR++DG++AVTFL ++K+L+EDP R +LDL Sbjct: 365 KKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 >gnl|CDD|183339 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed. Length = 411 Score = 367 bits (946), Expect = e-102 Identities = 153/433 (35%), Positives = 235/433 (54%), Gaps = 38/433 (8%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M + +P LGE + E + WL ++G++V+ G+ L E+ETDK TVE+PSPV+G + ++ Sbjct: 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60 Query: 79 VAKGDTVTYGGFLGYI----------------VEIARDEDESIKQNSPNSTANGLPEITD 122 V +GD V G + I A + + + + A Sbjct: 61 VEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAP 120 Query: 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKK 182 SP+ KL E G+ S +KG+G G+I K DV AA + + + + + Sbjct: 121 AAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAA--- 177 Query: 183 GVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMS 242 + EERV +S +R+ +AKR+ +++ + +EV+++ Sbjct: 178 --------------AAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVT 223 Query: 243 RIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGV 302 ++++R + K I G+KL F KA + L++ +NA D D IV K Y +IG+ Sbjct: 224 ALLALRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGI 278 Query: 303 AVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGS 362 AV TD GL+VPVIR ADK ++ E+ REI L +AR G L +LQ GTFTISN G++G Sbjct: 279 AVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGG 338 Query: 363 LLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRL 422 +PI+NPP+ ILG+ I ERP+V DG+IV+R +M L+LS+DHR++DG +A FL L Sbjct: 339 DYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKAL 398 Query: 423 KELLEDPERFILD 435 KELLE+P +L+ Sbjct: 399 KELLENPALLLLE 411 >gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component. Length = 463 Score = 328 bits (841), Expect = 2e-90 Identities = 187/423 (44%), Positives = 258/423 (60%), Gaps = 64/423 (15%) Query: 24 LVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGD 83 +VP +GES+ + T+ T+LK+ GE V+ E + ++ETDKVT+++ SP SG + E V +GD Sbjct: 95 VVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD 154 Query: 84 TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITD-------QGFQMPH---SPSA 133 TV G + I++ ED + Q +P+ PE TD + Q P +P A Sbjct: 155 TVEPGT---KVAIISKSED-AASQVTPSQKI---PETTDPKPSPPAEDKQKPKVESAPVA 207 Query: 134 SKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSAS 193 K A S SP K + K Q+ + Sbjct: 208 EKPKAPS--SPPPPKQSAKEPQLPPKE--------------------------------- 232 Query: 194 NIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKD 253 E RV M+RLR+ VA RLKD+QNT A+L+T+NEV+M+ ++ +RS+YKD Sbjct: 233 ------------RERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKD 280 Query: 254 IFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVP 313 F +KHG+KLG M F KAA LQ VNA IDGD I+Y++Y I +AVGT KGLVVP Sbjct: 281 AFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVP 340 Query: 314 VIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQ 373 VIR ADKMN EIE+ I L ++A G +S+ ++ G+FT+SNGGVYGSL+S+PI+NPPQ Sbjct: 341 VIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQ 400 Query: 374 SGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFI 433 S ILGMH I RP+V G +V RPMMY+AL+YDHR++DG+EAV FL R+K+++EDP+R + Sbjct: 401 SAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 460 Query: 434 LDL 436 LD+ Sbjct: 461 LDI 463 >gnl|CDD|183338 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed. Length = 547 Score = 321 bits (825), Expect = 2e-88 Identities = 148/436 (33%), Positives = 227/436 (52%), Gaps = 28/436 (6%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 ++ VP +GE E V WL ++G++VE + L+ +ETDK T+E+PSPV+G + E+ V Sbjct: 119 VVEVKVPDIGEIT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKV 177 Query: 80 AKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTA-------------------NGLPEI 120 GD V+ G L ++E+A + + + A Sbjct: 178 KVGDKVSVGSLL-VVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236 Query: 121 TDQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSH 180 G SP+ +L E G+ S +KGTGK+G+I K DV A + + S+ + + Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSA--AAAAAAA 294 Query: 181 KKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVN 240 + K S+ E +SR+++ A L + T ++ ++E + Sbjct: 295 AAAAGGGGLGLLPW--PKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD 352 Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKNYC 298 ++ + ++R + K EK G+KL + FF KA L+E NA +D GD + YK Y Sbjct: 353 ITDLEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYF 411 Query: 299 HIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGG 358 +IG AV T GLVVPVI+ DK +++EI REIA L ++AR G L D+Q G FTIS+ G Sbjct: 412 NIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLG 471 Query: 359 VYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTF 418 G +PI+N P+ ILG+ K Q +P+ + + V R M+ L+LSYDHR++DG A F Sbjct: 472 GIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARF 531 Query: 419 LVRLKELLEDPERFIL 434 LK+LL DP R +L Sbjct: 532 TNYLKQLLADPRRMLL 547 Score = 81.8 bits (203), Expect = 3e-16 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA + VP +GE V E V WL + G++VE + LV +ETDK T+E+PSP +G + E+ Sbjct: 1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59 Query: 79 VAKGDTVTYGGFLGYIVEIARDED 102 V GDTV+ GG L ++E A Sbjct: 60 VKVGDTVSVGGLL-AVIEAAGAAA 82 >gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated. Length = 633 Score = 264 bits (678), Expect = 2e-71 Identities = 122/442 (27%), Positives = 214/442 (48%), Gaps = 41/442 (9%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 + VP +G +E V + ++G+ VE + L+ +E DK ++EVP+P +G + E+ V Sbjct: 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKV 263 Query: 80 AKGDTVTYGGFLGYIVEIARDEDESI-----------------------KQNSPNSTANG 116 GD V G I R E E +P + A G Sbjct: 264 NVGDKVKTGSL------IMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEG 317 Query: 117 LPEITDQGFQMPH-SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQS 175 E + H +P +L E G++ + +KGTG++G+ILK DV A + + + + Sbjct: 318 KSEFAEND-AYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAA 376 Query: 176 TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILST 235 + G ++ F K EE V++ R+++ L ++ Sbjct: 377 PAAAAAGGGGPGLLPWPKVDFSKFGEIEE-----VELGRIQKISGANLHRNWVMIPHVTQ 431 Query: 236 YNEVNMSRIISIRSRYKDI-FEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI--DGDHI 292 +++ +++ + + R + ++K G+K+ + F KA + L+++ N+ + DG + Sbjct: 432 FDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRL 491 Query: 293 VYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTF 352 K Y +IG+AV T GLVVPV + +K I+E+ RE+ + ++AR G L+ D+Q G F Sbjct: 492 TLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCF 551 Query: 353 TISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDG 412 TIS+ G G+ +PI+N P+ ILG+ K P+ + R M+ L+LSYDHR++DG Sbjct: 552 TISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDG 611 Query: 413 KEAVTFLVRLKELLEDPERFIL 434 + F+ + + L D R +L Sbjct: 612 ADGARFITIINDRLSDIRRLVL 633 Score = 72.7 bits (179), Expect = 2e-13 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA +I VP +G +E V L ++G+ VE + L+ +E DK ++EVPSP +G + E+ Sbjct: 1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58 Query: 79 VAKGDTVTYGG 89 V GD V G Sbjct: 59 VKVGDKVETGA 69 Score = 68.5 bits (168), Expect = 4e-12 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 A + VP +G +E V L ++G++VE + L+ +E DK ++EVP+P +G + E+ V Sbjct: 105 AKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKV 162 Query: 80 AKGDTVTYG 88 GD V+ G Sbjct: 163 NVGDKVSTG 171 >gnl|CDD|131973 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 590 Score = 251 bits (641), Expect = 3e-67 Identities = 156/451 (34%), Positives = 233/451 (51%), Gaps = 46/451 (10%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 AT I +P LGESV E T+ WLK +G+ +E+ E ++E+ TDKV E+PSPV+G + E+ Sbjct: 135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILA 194 Query: 80 AKGDTVTYGGFLGYI----------------------------VEIARDEDESIKQNSPN 111 + DTV G + I + +DE + + P Sbjct: 195 EEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPE 254 Query: 112 STANGLPEITDQGFQMPHS-------PSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164 + E +S P KL AE G+ + +KGTG G+I K DV+AA Sbjct: 255 AEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAA 314 Query: 165 ISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224 ++++ + ++ + SAS K+ L K +R+R+ AK+ + Sbjct: 315 AEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKA----HLRGTTQKANRIREITAKKTR 370 Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 +A +A L+ +EV+M++I ++R+R K F +K G+ L F+ FF KA L+ VN Sbjct: 371 EALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVN 430 Query: 285 AEIDGD--HIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHL 342 A + D I Y H+G AV TD GL+ PVI +A +++ EI + IA + AR G L Sbjct: 431 ASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKL 490 Query: 343 SMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIV---EDG--QIVIRP 397 DL GTFTI+N G G+L +PIL PPQ+ ILG I +RP V EDG I IR Sbjct: 491 KPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQ 550 Query: 398 MMYLALSYDHRIVDGKEAVTFLVRLKELLED 428 M +L L+YDH+++DG +A FL +K+ LE+ Sbjct: 551 MCHLPLTYDHQLIDGADAGRFLTTIKDRLEE 581 Score = 79.4 bits (195), Expect = 2e-15 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA + +P+LGESV E T+ WLK G++VE+ E L+E+ TDKV E+PSP +G + E+ Sbjct: 1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIK 60 Query: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPE 119 + DTV GG + I E + S + + +S A PE Sbjct: 61 AEEDDTVDIGGEIAIIGE---AGEASAEAGAEDSAAAAEPE 98 >gnl|CDD|162310 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. Length = 546 Score = 213 bits (544), Expect = 7e-56 Identities = 125/452 (27%), Positives = 214/452 (47%), Gaps = 44/452 (9%) Query: 13 EEKVRSMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSG 72 S ++ VP +G + + TV L ++G++V + L+ LE+DK ++EVP+P SG Sbjct: 109 AAGQSSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASG 167 Query: 73 KLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP-------------- 118 + + V GD+V G + + +A + + A P Sbjct: 168 VVKSVKVKVGDSVPTGDLI-LTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226 Query: 119 ---------EITDQGFQMPH-SPSASKLIAESGLSPSDIKGTGKRGQILKSDVM----AA 164 T ++ H +P+ +L E G+ S +KGTG +G+IL+ DV Sbjct: 227 KAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEP 286 Query: 165 ISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224 R++++ + G + + F K E V MSR+R+ L Sbjct: 287 SVRAQAAAASAA------GGAPGALPWPNVDFSKFG-----EVEEVDMSRIRKISGANLT 335 Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 ++ +++ +++ + + R + EK+ G+KL + KA + L++ N Sbjct: 336 RNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKE-GVKLTVLHILMKAVAAALKKFPKFN 394 Query: 285 AEID--GDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHL 342 A +D G+ ++ K Y +IGVAV T GL+VPVI+ D+ I E+ E++ L ++AR G L Sbjct: 395 ASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKL 454 Query: 343 SMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLA 402 + ++Q FTIS+ G G +PI+N P+ ILG+ K P+ + R M+ L+ Sbjct: 455 TPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLS 514 Query: 403 LSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 LSYDHR++DG +A F + E L D R +L Sbjct: 515 LSYDHRVIDGADAARFTTYICESLADIRRLLL 546 Score = 58.7 bits (142), Expect = 3e-09 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 21 TKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 T+I VP +G++ E V L + G+ VE G+ L+ LE+DK ++EVPS +G + E+ V Sbjct: 1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVK 59 Query: 81 KGDTVTYGGFLGYI--VEIARDEDESIKQNSPNSTANG 116 GDT+ GG + + A+ + E+ K+ +P TA Sbjct: 60 VGDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGA 97 >gnl|CDD|183340 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed. Length = 306 Score = 204 bits (521), Expect = 3e-53 Identities = 102/303 (33%), Positives = 173/303 (57%), Gaps = 8/303 (2%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRII 189 +P A L + G+ S +KG+G+ G+IL DV I +S+ + S Sbjct: 5 TPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAAS------VSSA 58 Query: 190 NSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRS 249 A+ ++ +L +R K++ +R+ +A+ + ++ + A ++ NE++M+++ +R Sbjct: 59 QQAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRK 118 Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKNYCHIGVAVGTD 307 KD K G+KL F+ F KA L+E A+ D +VY + ++G+AV T+ Sbjct: 119 SVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTE 178 Query: 308 KGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSP 367 GL+VPVI++A K++IVEI +EI+RL + AR + +++ G+FTI+N G GSL P Sbjct: 179 AGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVP 238 Query: 368 ILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLE 427 ++N P+ I G+ I ++ IV++GQIV +M+L ++ DHR +DG F R+KELLE Sbjct: 239 VINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLE 298 Query: 428 DPE 430 PE Sbjct: 299 KPE 301 >gnl|CDD|162311 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. Length = 435 Score = 199 bits (507), Expect = 1e-51 Identities = 121/453 (26%), Positives = 207/453 (45%), Gaps = 58/453 (12%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 KI +P+L ++ + WLK+ G+ V G+++ E+ETDK T+E + G L ++ V + Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60 Query: 82 G-DTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEIT------------------- 121 G V + +VE D +N ++ P+ + Sbjct: 61 GTKDVPVNKPIAVLVEEKEDV-ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQK 119 Query: 122 --------------DQGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167 + G ++ SP A KL E G+ S + G+G G+I+K D+ + + + Sbjct: 120 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQ 179 Query: 168 SESSVDQS---TVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLK 224 S +S + T + KK + S E V +S +R+ +AKRL Sbjct: 180 SPASANFQAAATTPATKKAA---------------APVSTGSYEDVPLSNIRKIIAKRLL 224 Query: 225 DAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVN 284 +++ T E N+ +++++R + + KL F KA++ L+E+ N Sbjct: 225 ESKQTIPHYYVSIECNVDKLLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEAN 282 Query: 285 AEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSM 344 + + I I VAV T GL+ P++R+AD + I EI L + AR L Sbjct: 283 SSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKP 342 Query: 345 RDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIV---EDGQIVIRPMMYL 401 + Q GTFTISN G++G + I+NPPQ+ IL + +++ +V E+ + +M + Sbjct: 343 EEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSV 402 Query: 402 ALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 LS DHR++DG FL K+ LE+P +L Sbjct: 403 TLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 >gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional. Length = 347 Score = 177 bits (451), Expect = 4e-45 Identities = 98/302 (32%), Positives = 166/302 (54%), Gaps = 13/302 (4%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRII 189 SP A ++ E ++ +I+GTG RG+I+K DV+A + + + + +K Sbjct: 52 SPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEK------- 104 Query: 190 NSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRS 249 + + + E+ ER+ M+ +R+ +A+R+ ++ TA + EV+M+ ++++R Sbjct: 105 --VEEVPDNVTPYGEI--ERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRK 160 Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI--DGDHIVYKNYCHIGVAVGTD 307 + + + G K + A L + +NA + DG I+ NY ++ +AVG D Sbjct: 161 KVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMD 220 Query: 308 KGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSP 367 GL+ PV+ +A+KM++ E+ + G L+ +LQN TFTISN G++G P Sbjct: 221 NGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGP 280 Query: 368 ILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLE 427 I+N P S ILG+ E+P+V +G+IVIRP+M L L+ DHR+VDG F+ LKEL+E Sbjct: 281 IINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIE 340 Query: 428 DP 429 P Sbjct: 341 TP 342 >gnl|CDD|178143 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component. Length = 416 Score = 176 bits (449), Expect = 8e-45 Identities = 107/418 (25%), Positives = 202/418 (48%), Gaps = 19/418 (4%) Query: 29 GESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 GE + E + W + G+ VE + L E+++DK T+E+ S GK+ +++ + GD V G Sbjct: 7 GEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVG 66 Query: 89 -GFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH----SPSASKLIAESGLS 143 L +VE ++ +S+ +D+ +P+ L + G+ Sbjct: 67 ETLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGID 126 Query: 144 PSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSE 203 +DI GTGK G++LK DV+ ++ D S+ + S S + + Sbjct: 127 LNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVS-----TPTEQ 181 Query: 204 ELSEERVKMSRLRQTVAKRLKDAQNTAAILSTY--NEVNMSRIISIRSRYKDIFEKKHGI 261 ++ + + ++ + K + A A + + E+N+ ++ +++ +++ + Sbjct: 182 SYEDKTIPLRGFQRAMVKTMTAA---AKVPHFHYVEEINVDALVELKASFQEN-NTDPTV 237 Query: 262 KLGFMGFFTKAASHVLQEIKGVNAEIDGD--HIVYKNYCHIGVAVGTDKGLVVPVIRHAD 319 K F+ F K+ S L + +N+ + + I K +IGVA+ T+ GLVVP I++ Sbjct: 238 KHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQ 297 Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379 ++++EI +E++RL A L+ D+ GT T+SN G G SP+LN P+ I+ + Sbjct: 298 SLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIAL 357 Query: 380 HKIQERP-IVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 +IQ+ P V+DG + +M + + DHR++DG F K +E PE +L + Sbjct: 358 GRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLHM 415 >gnl|CDD|178345 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex. Length = 539 Score = 168 bits (428), Expect = 2e-42 Identities = 130/451 (28%), Positives = 209/451 (46%), Gaps = 63/451 (13%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 +I +PSL ++ E + WLK+ G+ V GE+L E+ETDK TVE+ G L ++ Sbjct: 114 EIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173 Query: 82 GDTVTYGGFLGYIVEIARDEDESI---KQNSPNSTANGLP------------EITDQGFQ 126 G +G ++ I +E+E I K P+S+A E ++ Sbjct: 174 GAKEIK---VGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPAS 230 Query: 127 MPH------------------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRS 168 P SP A KL ++ + S IKGTG G+I+K+D+ Sbjct: 231 SPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADI------- 283 Query: 169 ESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQN 228 + + S KG A+ S + L + +++R+ A RL ++ Sbjct: 284 -----EDYLASGGKG--------ATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQ 330 Query: 229 TAAILSTYNEVN--MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286 T I Y V+ + +++++RS+ + E G K+ KAA+ L+++ N+ Sbjct: 331 T--IPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSS 388 Query: 287 IDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRD 346 D+I + +I VAV T+ GL VPV++ ADK + I E+ +L ++AR L D Sbjct: 389 WTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPED 448 Query: 347 LQNGTFTISN-GGVYGSLLSSPILNPPQSGILGMHKIQER--PIVEDGQIVIRPMMYLAL 403 + GTFT+SN GG +G I+NPPQS IL + ++R P Q M + L Sbjct: 449 YEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTL 508 Query: 404 SYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 S DHR++DG +L K +E+PE +L Sbjct: 509 SCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 >gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional. Length = 371 Score = 78.4 bits (194), Expect = 3e-15 Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 T I +P G S+ E V WL + G+ VE G+ L+++ETDK+T EV +P +G L Sbjct: 1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV 60 Query: 79 VAKGDTVTYGGFLGYIVE 96 +G+T+ G L + + Sbjct: 61 AQEGETLPVGALLAVVAD 78 >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed. Length = 1228 Score = 71.5 bits (176), Expect = 5e-13 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 20/164 (12%) Query: 285 AEIDGD-HIVYKNYCHIGVAV------GTDKGLVVPVIRHADKMNIVEIEREIARLGREA 337 AE+DG +V + ++G+A+ G+ + LVVP I+ A+ M+ + + R A Sbjct: 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGS-RQLVVPAIKGAETMDFAQFWAAYEDIVRRA 253 Query: 338 RAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQ---------ERPIV 388 R G L+ D Q T +++N G G++ S P L Q I+G+ ++ E + Sbjct: 254 RDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLA 313 Query: 389 EDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERF 432 E G I +M L +YDHRI+ G E+ FL + +LL + F Sbjct: 314 ELG---ISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLGEDGF 354 >gnl|CDD|183363 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional. Length = 464 Score = 55.7 bits (135), Expect = 2e-08 Identities = 26/64 (40%), Positives = 44/64 (68%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA +IL+P+L ++ E T+ WLK+ G+ V+ G+++ E+ETDK T+EV + G L ++ Sbjct: 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL 60 Query: 79 VAKG 82 V +G Sbjct: 61 VPEG 64 >gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. Length = 1201 Score = 44.3 bits (105), Expect = 6e-05 Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 E+G+ VE G+ LV LE K+ + V +PV+GK+ ++ GD V G Sbjct: 1149 EVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAG 1194 >gnl|CDD|181754 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated. Length = 592 Score = 44.1 bits (105), Expect = 7e-05 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%) Query: 9 TGILEEKVRSMATKILVPSLGESVNEATV-----GTWLK---EIGESVEIGEILVELETD 60 G+ EE V +I+V + V GT +K + G+ V+ G+ ++ LE Sbjct: 497 DGMPEEVVVEPLKEIVVGGRPRASAPGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAM 556 Query: 61 KVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 K+ E+ +PV G + E+ V +GD V G Sbjct: 557 KMENEIQAPVDGTVKEILVKEGDRVNPG 584 >gnl|CDD|162205 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. Length = 582 Score = 40.2 bits (94), Expect = 0.001 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 18 SMATKILVPSLGESVNEATVGTWLKEI---GESVEIGEILVELETDKVTVEVPSPVSGKL 74 S T G V G+ +K G++V GE+L+ LE K+ E+ + +G + Sbjct: 506 SGGTVAAKAGAGTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTV 565 Query: 75 HEMSVAKGDTVTYGGFL 91 E+ V GD V+ G L Sbjct: 566 REILVKVGDAVSVGQVL 582 >gnl|CDD|184472 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional. Length = 593 Score = 39.9 bits (94), Expect = 0.001 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 20 ATKILVPSLGESVNEATVGTWLK---EIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 A + GE V G K G++V G++L+ LE K+ E+ + +G + Sbjct: 515 AAAAPAAAAGEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRG 574 Query: 77 MSVAKGDTVTYG 88 ++V +GD V G Sbjct: 575 IAVKEGDAVAVG 586 >gnl|CDD|167014 PRK00624, PRK00624, glycine cleavage system protein H; Provisional. Length = 114 Score = 37.1 bits (86), Expect = 0.010 Identities = 19/45 (42%), Positives = 29/45 (64%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85 L +G + GE+LV LE+ K +EV SPVSG++ E++ A D + Sbjct: 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDI 83 >gnl|CDD|132121 TIGR03077, not_gcvH, glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. Length = 110 Score = 36.8 bits (85), Expect = 0.010 Identities = 19/40 (47%), Positives = 29/40 (72%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVA 80 L +G S + GE+LV LE+ K +EV SPVSG++ E+++A Sbjct: 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA 76 >gnl|CDD|168146 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated. Length = 153 Score = 33.7 bits (77), Expect = 0.095 Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 G+ V++G+ L+ LE K+ E+P+P G + ++ V +GDTV G Sbjct: 103 GQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTG 146 >gnl|CDD|172832 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 33.5 bits (77), Expect = 0.096 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 12/70 (17%) Query: 283 VNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIR---------HADKMNIVEIEREIARL 333 +A + ++ ++ H+ A D V P R A N VE+++ A L Sbjct: 303 RDAVVSSGATIH-SFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK--AVL 359 Query: 334 GREARAGHLS 343 G+ A+A HL+ Sbjct: 360 GKGAKANHLT 369 >gnl|CDD|180522 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated. Length = 155 Score = 33.2 bits (77), Expect = 0.14 Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 E+G++V+ G+ L +E KV E+ + SG + E+ V G V +G Sbjct: 103 EVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFG 148 >gnl|CDD|179245 PRK01202, PRK01202, glycine cleavage system protein H; Provisional. Length = 127 Score = 31.7 bits (73), Expect = 0.38 Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGK 73 L E+G+ V+ GE +E+ K ++ +PVSG+ Sbjct: 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGE 76 >gnl|CDD|180811 PRK07051, PRK07051, hypothetical protein; Validated. Length = 80 Score = 31.1 bits (71), Expect = 0.54 Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 42 KEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 E+G++V G+++ +E K EV + +G++ E V G+ V G Sbjct: 26 VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAG 72 >gnl|CDD|183211 PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional. Length = 370 Score = 30.9 bits (70), Expect = 0.75 Identities = 15/31 (48%), Positives = 19/31 (61%) Query: 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 V+V + VSG+L +SVA GD V LG I Sbjct: 62 VDVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 92 >gnl|CDD|148013 pfam06152, Phage_min_cap2, Phage minor capsid protein 2. Family of related phage minor capsid proteins. Length = 361 Score = 30.1 bits (68), Expect = 1.0 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 6/104 (5%) Query: 157 LKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLR 216 L + I++ + V + + K +II ++ ++ Sbjct: 60 LNKQNIKLIAK-YTGVAEEAITRVIKNAGLKIIKDIDKQLSEALNKGLGADPESNFQ--- 115 Query: 217 QTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHG 260 V K L Q A S N VN + + + + Y+DI K Sbjct: 116 TIVDKVLNAYQRQA--WSDLNLVNQTLLSTAQRAYQDIINKTTA 157 >gnl|CDD|161657 TIGR00375, TIGR00375, conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology. Length = 374 Score = 30.3 bits (68), Expect = 1.1 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 239 VNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYC 298 + + RI+ +SR K G++L + + + I E+DG I Y++ Sbjct: 17 LTLDRILVEQSRLK-------GLELLGIIDCHS---PLEEGISSGKRELDGGGIRYRSEL 66 Query: 299 HI 300 I Sbjct: 67 SI 68 >gnl|CDD|185302 PRK15404, PRK15404, leucine ABC transporter subunit substrate-binding protein LivK; Provisional. Length = 369 Score = 30.0 bits (68), Expect = 1.3 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 12/48 (25%) Query: 101 EDESIKQNSPNSTANGLPEITDQGFQM---------PHSPSASKLIAE 139 EDE I +P +TA PE+T +G+Q+ P+A+K I E Sbjct: 113 EDEGILMITPAATA---PELTARGYQLIFRTIGLDSDQGPTAAKYILE 157 >gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional. Length = 71 Score = 29.4 bits (66), Expect = 1.9 Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 35 ATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 A+V + G+ + G+ LV LE+ K+ + V + V+G + ++SV+ GD + G + I Sbjct: 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVI 70 >gnl|CDD|152285 pfam11849, DUF3369, Domain of unknown function (DUF3369). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 170 amino acids in length. Length = 173 Score = 29.4 bits (67), Expect = 2.0 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 4/41 (9%) Query: 161 VMAAISRSESSVDQSTVDSHKKGVFSRIINSASNIFEKSSV 201 V +A+ RS D T++ ++G +II++++N+F S+ Sbjct: 1 VYSAL-RSYR--DICTIEKSRRG-LEKIIDASANLFSLRSL 37 >gnl|CDD|132352 TIGR03309, matur_yqeB, selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins. Length = 256 Score = 29.2 bits (66), Expect = 2.2 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 39 TWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE-MSVAKG 82 T K IG+SV+ G+++ + V + + G +HE ++V +G Sbjct: 176 TPTKAIGDSVKKGDVIATVGDVPVVAPIDGLLRGLIHEGLTVTEG 220 >gnl|CDD|161892 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set. Length = 515 Score = 28.7 bits (64), Expect = 2.8 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 21/109 (19%) Query: 174 QSTVDSHKKGVFSRIINSASN-------------IFEKSSVSEELSEERVKMSRLRQTVA 220 Q TVD K + ++ +N A N + K E L E K +A Sbjct: 391 QYTVDDQKDKLINKRLNCARNWIRKYAPEDFKFSLRSKFDNMEILEENSKKAIN---ELA 447 Query: 221 KRLKDAQNTAA-----ILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLG 264 + LK A I E + ++ ++ YK + K++G KLG Sbjct: 448 EFLKKNFEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPKLG 496 >gnl|CDD|150625 pfam09971, DUF2206, Predicted membrane protein (DUF2206). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 716 Score = 28.5 bits (64), Expect = 3.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 347 LQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379 L +G + + G Y ++LS IL P S ILG+ Sbjct: 240 LMSGIWDMDLPGNYNAVLSIVILTPIYSIILGL 272 >gnl|CDD|152498 pfam12063, DUF3543, Domain of unknown function (DUF3543). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 217 to 291 amino acids in length. This domain is found associated with pfam00069. This domain has a single completely conserved residue A that may be functionally important. Length = 226 Score = 28.4 bits (64), Expect = 3.7 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 13/96 (13%) Query: 199 SSVSEELSEER----VKMSRLRQ---TVAKRLKDAQNTAAILSTYNEVNMSRIIS-IRSR 250 S LSEE VK L +A ++N S N VN +++ +R R Sbjct: 59 PDASVSLSEEALVLYVKALSLLSKAMDIASAWWASKNGQLKPS--NRVN--QVVQWLRER 114 Query: 251 YKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286 + + EK ++L F GV AE Sbjct: 115 FNECLEKAEFLRLKLQRFLPDDHPS-HPGSSGVTAE 149 >gnl|CDD|139048 PRK12538, PRK12538, RNA polymerase sigma factor; Provisional. Length = 233 Score = 28.3 bits (63), Expect = 3.7 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 208 ERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMS 242 ER ++S L + +RL + Q A ILS Y+E NMS Sbjct: 157 ERNELSDLLEAAMQRLPEQQRIAVILS-YHE-NMS 189 >gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional. Length = 1113 Score = 28.3 bits (64), Expect = 3.8 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Query: 198 KSSVSEELSEERVKMS--RLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSR 250 K EE E +S +L +A+ L QN L+ YN S+++S++++ Sbjct: 107 KDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN----SQLVSLQTQ 157 >gnl|CDD|179602 PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional. Length = 331 Score = 28.4 bits (64), Expect = 4.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 70 VSGKLHEMSVAKGDTVTYGGFLG 92 V G+L ++V +GD V G LG Sbjct: 50 VGGRLASLAVDEGDAVKAGQVLG 72 >gnl|CDD|147814 pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI). This family consists of several Proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organized in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex. Length = 356 Score = 28.3 bits (64), Expect = 4.4 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 26 PSLGE-SVNEATVGTWLKEIGESVEIGEILV 55 P +GE V V E+G +VEIGEI V Sbjct: 222 PFVGELRVGYVPVEIPHPELGFAVEIGEIEV 252 >gnl|CDD|129622 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE. Length = 156 Score = 28.3 bits (63), Expect = 4.7 Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 E+G+ V+ G+I+ +E K+ E+ + V+GK+ E+ V G V YG Sbjct: 104 EVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYG 149 >gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. Length = 563 Score = 28.2 bits (63), Expect = 4.9 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 13/92 (14%) Query: 160 DVMAAISRSESSVDQ-STVDSHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQT 218 +V+ + + +DQ D + + + + EEL + V +S +R+ Sbjct: 326 EVLEYAEKIKEELDQLDDSDESLEALEEEV----------DKLEEELDKAAVALSLIRRK 375 Query: 219 VAKRLKDAQNTAAILSTYNEVNMSRIISIRSR 250 A+RL A+ L + I++ Sbjct: 376 AAERL--AKRVEQELKALAMEKAEFTVEIKTS 405 >gnl|CDD|178217 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase. Length = 447 Score = 27.9 bits (62), Expect = 5.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 250 RYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV 293 R +F+ HG+K F +A + +++I+G A D D IV Sbjct: 86 RENALFQDYHGLKS-----FRQAMASFMEQIRGGKARFDPDRIV 124 >gnl|CDD|179024 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated. Length = 343 Score = 27.8 bits (63), Expect = 5.1 Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 291 HIVYKNYCHIGVAVGTDKGLVV 312 + N+C IG AV G +V Sbjct: 283 SVRGSNFCDIGFAVDERTGRLV 304 >gnl|CDD|132378 TIGR03335, F390_ftsA, coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. Length = 445 Score = 27.5 bits (61), Expect = 6.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 129 HSPSASKLIAESGLSPSDIK 148 HSP K E+ +SPSDIK Sbjct: 32 HSPFYKKWFQENNISPSDIK 51 >gnl|CDD|163506 TIGR03794, NHPM_micro_HlyD, NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. Length = 421 Score = 27.5 bits (61), Expect = 7.0 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Query: 49 EIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 EI E+ +L + + S SG++ E++ G V G Sbjct: 242 EIEELENKLN---LNTRIVSQHSGRVIELNYTPGQLVAAG 278 >gnl|CDD|184375 PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional. Length = 852 Score = 27.4 bits (61), Expect = 7.5 Identities = 11/21 (52%), Positives = 16/21 (76%) Query: 8 NTGILEEKVRSMATKILVPSL 28 N+GIL+ V S ATKI +P++ Sbjct: 735 NSGILDVIVESTATKIFLPNV 755 >gnl|CDD|100616 PRK00611, PRK00611, putative disulfide oxidoreductase; Provisional. Length = 135 Score = 27.1 bits (60), Expect = 8.8 Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 241 MSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDG 289 + I+ I + +D K + + L +GF LQEI G+ +I G Sbjct: 49 LVVILGIAAYREDSSIKIYALPLALVGFGIAIYQVCLQEIPGMTLDICG 97 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.315 0.133 0.363 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,040,934 Number of extensions: 463056 Number of successful extensions: 850 Number of sequences better than 10.0: 1 Number of HSP's gapped: 810 Number of HSP's successfully gapped: 75 Length of query: 436 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 340 Effective length of database: 3,920,105 Effective search space: 1332835700 Effective search space used: 1332835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (26.7 bits)