RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide
succinyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(436 letters)
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 391 bits (1006), Expect = e-109
Identities = 133/439 (30%), Positives = 224/439 (51%), Gaps = 34/439 (7%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
MA + +P +GE ++E + W + G+ V ++L E++ DK VE+PSPV GK+ E+
Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH--------- 129
V +G T G L + + Q + E + ++
Sbjct: 61 VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120
Query: 130 -----------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVD 178
PS K E G+ ++GTGK G++LK D+ A ++ + +
Sbjct: 121 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEE 180
Query: 179 SHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNE 238
E E R KMS +R+ +AK + +++TA ++ +E
Sbjct: 181 KAAPAAAKPATTEG-----------EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE 229
Query: 239 VNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKN 296
+++++++ R ++K I +K IKL F+ + KA L+E +N ID + I+ K+
Sbjct: 230 ADVTKLVAHRKKFKAIAAEKG-IKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKH 288
Query: 297 YCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISN 356
Y +IG+A TD+GL+VPVI+HAD+ I + +EI L +AR G L+ +++ + TI+N
Sbjct: 289 YYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITN 348
Query: 357 GGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAV 416
G G +P++N P+ ILG+ +I E+PIV DG+IV PM+ L+LS+DHR++DG A
Sbjct: 349 IGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 408
Query: 417 TFLVRLKELLEDPERFILD 435
L +K LL DPE +++
Sbjct: 409 KALNHIKRLLSDPELLLME 427
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 layers);
2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A
1c4t_A
Length = 233
Score = 266 bits (680), Expect = 9e-72
Identities = 128/231 (55%), Positives = 176/231 (76%)
Query: 206 SEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGF 265
SE+RV M+RLR+ VA+RL +A+N+ A+L+T+NEVNM I+ +R +Y + FEK+HGI+LGF
Sbjct: 3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62
Query: 266 MGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE 325
M F+ KA L+ VNA IDGD +VY NY + +AV T +GLV PV+R D + + +
Sbjct: 63 MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122
Query: 326 IEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQER 385
IE++I L + R G L++ DL G FTI+NGGV+GSL+S+PI+NPPQS ILGMH I++R
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182
Query: 386 PIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
P+ +GQ+ I PMMYLALSYDHR++DG+E+V FLV +KELLEDP R +LD+
Sbjct: 183 PMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 253 bits (647), Expect = 6e-68
Identities = 79/232 (34%), Positives = 131/232 (56%)
Query: 200 SVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKH 259
V ++ + ++ +R+ +AK + ++ EV+ + ++ R+ KD F+K+
Sbjct: 11 PVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEE 70
Query: 260 GIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHAD 319
G L + FF KA + L+E +N+ GD I+ +I +A+ L VPVI++AD
Sbjct: 71 GYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNAD 130
Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379
+ +I I REI+ L +AR G LS D++ GTFT+++ G +GS+ S I+N PQ+ IL +
Sbjct: 131 EKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV 190
Query: 380 HKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPER 431
I +RP++ D I +R M+ L LS DHRI+DG A FL +K +E +
Sbjct: 191 ESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISK 242
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 236 bits (603), Expect = 7e-63
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 9/234 (3%)
Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266
+ + + +A+++ + EV + ++ +R R+ ++
Sbjct: 14 PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPF 68
Query: 267 GFFTKAASHVLQEIKGVNAEI----DGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322
+ L+ +N+ +G + H+G T++GL+VPV+ A N
Sbjct: 69 ALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382
E+ +A L AR G L+ +L+ TFT+SN G G P++N P++ ILG+ I
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAI 188
Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
+ RP+V G++V RP M L +DHR+VDG + F+ L++L+E PE +LDL
Sbjct: 189 KPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A*
Length = 219
Score = 191 bits (488), Expect = 2e-49
Identities = 18/205 (8%), Positives = 56/205 (27%), Gaps = 16/205 (7%)
Query: 227 QNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286
+ +++++ + KK+ K F F + ++
Sbjct: 27 SVAQCTYNQTVQLDITAFLKTV--------KKNKHK--FYPAFIHILARLMNAHPEFRMA 76
Query: 287 IDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGRE-ARAGHLSMR 345
+ +V + H V ++ + + + ++ +
Sbjct: 77 MKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPK 136
Query: 346 DLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSY 405
F +S + + + + + + + +M LA+
Sbjct: 137 GFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTM-GKYYTQGD----KVLMPLAIQV 191
Query: 406 DHRIVDGKEAVTFLVRLKELLEDPE 430
H + DG L L++ ++ +
Sbjct: 192 HHAVCDGFHVGRMLNELQQYCDEWQ 216
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 188 bits (480), Expect = 1e-48
Identities = 18/196 (9%), Positives = 51/196 (26%), Gaps = 17/196 (8%)
Query: 238 EVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNY 297
+++++ + F + + + + I D ++ +
Sbjct: 33 KIDITTLKKSLDDSA----------YKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDS 82
Query: 298 CHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRD--LQNGTFTIS 355
V + + +I + + ++ IS
Sbjct: 83 VDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNIS 142
Query: 356 NGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEA 415
+ + + + + Q R ++ L++ H + DG
Sbjct: 143 ALPWVNFDSFNLNVANFTDYFAPIITMAKYQ-----QEGDRLLLPLSVQVHHAVCDGFHV 197
Query: 416 VTFLVRLKELLEDPER 431
F+ RL+EL +
Sbjct: 198 ARFINRLQELCNSKLK 213
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 188 bits (479), Expect = 2e-48
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 4/231 (1%)
Query: 206 SEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGF 265
+ +S +R+ +A+RL ++ T +VNM ++ +R I E + I
Sbjct: 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKIS--V 68
Query: 266 MGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE 325
F KA++ ++ N+ I + + VAV T GL+ P++ +A +
Sbjct: 69 NDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVET 128
Query: 326 IEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQER 385
I ++ L +AR G L + Q GTFTISN G++G S I+NPPQ+ IL + +++
Sbjct: 129 IANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDK 188
Query: 386 PIVEDGQ--IVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
+ D + + MM + LS DHR+VDG +L ++ LE P +L
Sbjct: 189 LVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 182 bits (463), Expect = 1e-46
Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 3/235 (1%)
Query: 202 SEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGI 261
++ E V M+RL Q A L + ++ + +++ + + R + +K G+
Sbjct: 10 AKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFR-VAQKAVAEKAGV 68
Query: 262 KLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV--YKNYCHIGVAVGTDKGLVVPVIRHAD 319
KL + KA +++L+E+ N+ + K Y HIG AV T GL+VPVIR+ D
Sbjct: 69 KLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVD 128
Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379
+ +++++ E A L +AR+ L +Q FTIS+ G G +PI+N P+ ILG+
Sbjct: 129 QKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGV 188
Query: 380 HKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434
K +P+ + R M+ L+LSYD R+++G A F RL +LL D +L
Sbjct: 189 SKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243
>2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; cubic core, HOMO trimer, oxidized
COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB:
2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 180 bits (456), Expect = 6e-46
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 5/233 (2%)
Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266
+ + + + K + A +EV+++ ++ +R K I GIKL FM
Sbjct: 31 DRTEPVKGFHKAMVKTMSAALKIPH-FGYCDEVDLTELVKLREELKPIAFA-RGIKLSFM 88
Query: 267 GFFTKAASHVLQEIKGVNAEI--DGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIV 324
FF KAAS L + +NA + + +I YK +IG+A+ T++GL+VP +++ +I
Sbjct: 89 PFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIF 148
Query: 325 EIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQE 384
EI E+ RL + AG LS DL GTFT+SN G G + P++ PP+ I + I+
Sbjct: 149 EIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKA 208
Query: 385 RPIV-EDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436
P E G++ +M ++ S DHRI+DG F K LE+P +LDL
Sbjct: 209 LPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2,
protein structure initiative; 2.30A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 217
Score = 165 bits (419), Expect = 2e-41
Identities = 26/198 (13%), Positives = 53/198 (26%), Gaps = 23/198 (11%)
Query: 238 EVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDH-IVYKN 296
EV F + A EI ID D +V +
Sbjct: 35 EVECGGARQRAKAAG----------QSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYD 84
Query: 297 YCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGRE-------ARAGHLSMRDLQN 349
+ + + R + +E + A + + D
Sbjct: 85 TIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDY 144
Query: 350 GTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRI 409
G +S + + + I+ +G R +M +A++ H
Sbjct: 145 GLILLSATPDLYFTSITGTQEKRSGNNYPLLNA-GKAIIREG----RLVMPIAMTIHHGF 199
Query: 410 VDGKEAVTFLVRLKELLE 427
+DG F ++++ L+
Sbjct: 200 IDGHHLSLFYKKVEDFLK 217
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 108 bits (271), Expect = 2e-24
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 19/169 (11%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
KIL+PSL ++ E + WLK+ GE+V G+ L E+ETDK V + + G L ++ V +
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 82 GDTVTYGGFLGYIVEIARDEDES-------------------IKQNSPNSTANGLPEITD 122
G G L ++ ++ + P + E
Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIP 124
Query: 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171
+ SP+A ++ + L S TG RG K D + + ++
Sbjct: 125 GTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 173
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 84.6 bits (209), Expect = 4e-17
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
++L+P+L ++ TV W K++GE + G++L E+ETDK T+ G L ++
Sbjct: 26 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 85
Query: 79 VAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120
V +G V G L IVE + + P + P++
Sbjct: 86 VPEGTRDVPLGTPLCIIVEKE-ADISAFADYRPTEVTDLKPQV 127
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 83.6 bits (207), Expect = 7e-17
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
+ ILVP L ESV +ATV TW K+ G++V E+LVE+ETDKV +EVP+ G L +
Sbjct: 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLE 61
Query: 80 AKGDTVTYGGFLGYIVE 96
+G TVT LG + E
Sbjct: 62 DEGTTVTSRQILGRLRE 78
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 80.9 bits (200), Expect = 5e-16
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77
+ + +GE + E TV W + G++V + + E+++DK +V + S G + ++
Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
Query: 78 SVAKGDTVTYGGFLGYIVEIARDEDE 103
D G L I A + E
Sbjct: 62 YYNLDDIAYVGKPLVDIETEALKDLE 87
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 79.6 bits (196), Expect = 1e-15
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77
S K+ +PSL ++ T+ W K+ G+ + G+++ E+ETDK TV S + ++
Sbjct: 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKI 64
Query: 78 SVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP 118
VA+G V G + V ++ E+ K + +S+A P
Sbjct: 65 LVAEGTRDVPIGAIICITVG-KPEDIEAFKNYTLDSSAASGP 105
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 78.4 bits (193), Expect = 3e-15
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77
S KIL+PSL ++ E + WLK+ GE+V G+ L E+ETDK V + + G L ++
Sbjct: 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 64
Query: 78 SVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNST 113
V +G + G +G IVE E E K S S+
Sbjct: 65 VVEEGSKNIRLGSLIGLIVE----EGEDWKHVSGPSS 97
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; pyruvate dehydrogenase
kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A
{Homo sapiens} PDB: 3crl_C*
Length = 87
Score = 76.8 bits (189), Expect = 9e-15
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
++L+P+L ++ TV W K++GE + G++L E+ETD T+ G L ++
Sbjct: 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63
Query: 79 VAKGD-TVTYGGFLGYIVE 96
V +G V G L IVE
Sbjct: 64 VPEGTRDVPLGTPLCIIVE 82
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 76.8 bits (189), Expect = 9e-15
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79
A I P+ ES+ + TV TW K+ GE+V+ E++V++ETDKV +EV + G + E+
Sbjct: 1 AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVK 60
Query: 80 AKGDTVTYGGFLGYIVE 96
+GDTV G LG + E
Sbjct: 61 NEGDTVLSGELLGKLTE 77
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 72.5 bits (178), Expect = 2e-13
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M ++ VP +G E V + ++G+ V + L+ +E DK ++EVP+P +G + E+
Sbjct: 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58
Query: 79 VAKGDTVTYGGFLGYI 94
V GD V G +
Sbjct: 59 VNVGDKVKTGSLIMIF 74
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 69.0 bits (169), Expect = 2e-12
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
++ VP +G + +G+++ + + L+ LETDK T++VP+ V+G + E+ V
Sbjct: 4 ELKVPDIGGHE-NVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62
Query: 82 GDTVTYGGFLGYI 94
GD ++ GG + +
Sbjct: 63 GDKISEGGLIVVV 75
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 65.5 bits (160), Expect = 2e-11
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 26 PSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85
P++ S + + + E G VE G E+E K+ + + G++ + G +
Sbjct: 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVL 63
Query: 86 TYGGFLGYIVEIARDEDE 103
G + + D+ E
Sbjct: 64 EAGCVV---ARLELDDLE 78
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1
PDB: 1iyv_A
Length = 79
Score = 65.1 bits (159), Expect = 3e-11
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
I VP +G + V L + G+ +E+ + LV LE+ K ++EVPSP +G + +SV
Sbjct: 3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 82 GDTVTYGGFLGYI 94
GD + G + +
Sbjct: 60 GDKLKEGDAIIEL 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 61.5 bits (149), Expect = 4e-10
Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 175/408 (42%)
Query: 86 TYGGFLGYIV--------EIARDEDESIKQNSPNSTANGL--------PEIT-DQGF--- 125
TY +G ++ E+ R ++ K + GL P T D+ +
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-----QGLNILEWLENPSNTPDKDYLLS 233
Query: 126 -----------QMPHSPSASKLIAESGLSPSD----IKG-TG-KRGQILKSDVMAAISRS 168
Q+ H +KL G +P + +KG TG +G + AI+ +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKL---LGFTPGELRSYLKGATGHSQGLV----TAVAIAET 286
Query: 169 ---ES--------------------------SVDQSTV-DS--HKKGVFSRIINSASNIF 196
ES S+ S + DS + +GV S ++ S SN+
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNL- 344
Query: 197 EKSSVSEEL--------SEERVKMSRL----RQTV-----------AKRLKDAQNTAAIL 233
+ V + + + ++V++S L + V L+ A+ +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--- 400
Query: 234 STYNEVNMSRI------ISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI 287
++ SRI + +R+ + H L A+ + +++ N
Sbjct: 401 ----GLDQSRIPFSERKLKFSNRFLPVASPFHSHLL------VPASDLINKDLVKNNVSF 450
Query: 288 DGD--HI-VYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE-IEREIARL---------- 333
+ I VY + G+D +R +I E I I RL
Sbjct: 451 NAKDIQIPVYDTF------DGSD-------LRVLSG-SISERIVDCIIRLPVKWETTTQF 496
Query: 334 ----------GREARAGHLSMRDLQNGTFTISNGGVY----GSLLSSP 367
G + G L+ R ++GT GV G+L +P
Sbjct: 497 KATHILDFGPGGASGLGVLTHR-NKDGT------GVRVIVAGTLDINP 537
Score = 52.3 bits (125), Expect = 2e-07
Identities = 77/469 (16%), Positives = 138/469 (29%), Gaps = 176/469 (37%)
Query: 18 SMATKILVPS----LGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVP-SPVSG 72
S+ +LVP+ + + E + K + E E D + P +P
Sbjct: 15 SLEHVLLVPTASFFIASQLQE----QFNKILPEPTE------GFAAD----DEPTTPA-- 58
Query: 73 KLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQ---MP- 128
E+ V K FLGY+ + L + F+ +
Sbjct: 59 ---EL-VGK--------FLGYVSSLVEPSK-------VGQFDQVLNLCLTE-FENCYLEG 98
Query: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMA--AISRSESSVDQS----TVDS 179
H+ L A+ L + K +++K+ + A R S V
Sbjct: 99 NDIHA-----LAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 180 HKKGVFSRIINSASNI---FEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTY 236
+ + I N F EEL + L QT + D ++
Sbjct: 152 GNAQLVA-IFGGQGNTDDYF------EELRD-------LYQTYHVLVGD------LIKFS 191
Query: 237 NEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV--- 293
E +S +I + +F G+ +L+ ++ + D D+++
Sbjct: 192 AET-LSELIRTTLDAEKVF--TQGLN-------------ILEWLENPSNTPDKDYLLSIP 235
Query: 294 -------------YKNYCHI-GV-----------AVGTDKGLVVPVI-----------RH 317
Y + G A G +GLV V
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 318 ADKMNIVEIEREI-ARLGREARAGHLSMRD--LQNGTFTISNG-GVYGSLLSSPILNPPQ 373
K + + I R EA + S+ L++ ++ N GV +LS I N Q
Sbjct: 296 VRK--AITVLFFIGVR-CYEA-YPNTSLPPSILED---SLENNEGVPSPMLS--ISNLTQ 346
Query: 374 SGILGMHKIQER--------PIVEDGQIVIRPMMYLAL--SYDHRIVDG 412
++Q+ P Q+ ++L + +V G
Sbjct: 347 E------QVQDYVNKTNSHLP--AGKQV------EISLVNGAKNLVVSG 381
Score = 34.5 bits (79), Expect = 0.047
Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 102/264 (38%)
Query: 225 DAQNTAAILSTYNEVNMSRIISIR-----SRYKDIFEKKHG---------------IKL- 263
DA +T + ++ + ++ S+ ++ F K +L
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 264 -GFMGFFTKAASHVLQEIKGVNAEI-------------DGDHIVYKNYCHIGVAVGTDKG 309
F+G+ +S V G ++ +G+ I H +A +
Sbjct: 62 GKFLGYV---SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------H-ALAAKLLQE 111
Query: 310 LVVPVIRHADKMNIVEIE-REIARLGREARAGHLS--MRDLQNGTFTISN--GGVYGSLL 364
+ +++ R S R + G + GG
Sbjct: 112 NDTTL---VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG------ 162
Query: 365 SSPILNPPQSGILG-MHKIQE-----RPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTF 418
Q ++++ +V D +I+ +
Sbjct: 163 --------QGNTDDYFEELRDLYQTYHVLVGD---LIKFS-------------AE----- 193
Query: 419 LVRLKELLEDPERFI------LDL 436
L EL+ L++
Sbjct: 194 --TLSELIRTTLDAEKVFTQGLNI 215
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 55.3 bits (133), Expect = 3e-08
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
M ++ VP + E V + ++G+ V + L+ +E DK ++EVP+P +G + E+
Sbjct: 1 MVKEVNVPDIVE------VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 54
Query: 79 VAKGDTVTYGGFLGYI-VEIARDEDESIKQ 107
V GD V G + VE A KQ
Sbjct: 55 VNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 54.2 bits (130), Expect = 5e-08
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81
K P++ S + + + E G VE G E+E K+ + + G++ +
Sbjct: 13 KENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRP 71
Query: 82 GDTVTYGGFLGYIVEIARDEDESIKQNSPNS 112
G + G + + D+ + + P+S
Sbjct: 72 GAVLEAGCVV---ARLELDDPSKVHPSGPSS 99
Score = 28.8 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDE 103
G S G + E E D + SP +GKL + +V G V G +E+ +
Sbjct: 1 GSSGSSGTCVFEKEND--PTVLRSPSAGKLTQYTVEDGGHVEAGSSY-AEMEVMKMIMT 56
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 53.7 bits (129), Expect = 9e-08
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
TV L + G++V+ G+ ++ LE K+ E+ +P GK+ ++ V + D V G L I
Sbjct: 18 TVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2btg_A
2bth_A 2cyu_A
Length = 51
Score = 51.9 bits (125), Expect = 3e-07
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRS 168
SP+ +L+AE L S IKGTG G++ + DV ++++
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKA 51
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain,
BCCP, X-RAY diffraction, structural genomics, NPPSFA;
1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C*
2evb_A
Length = 74
Score = 51.7 bits (124), Expect = 3e-07
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
V L +G+ V +G+ L+ LE K+ E+PSP G + + V +G+ V G L +
Sbjct: 15 KVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 50.5 bits (121), Expect = 7e-07
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171
P+A +L E G+ S +KGTG G I DV + +
Sbjct: 8 MPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKA 49
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 50.5 bits (121), Expect = 7e-07
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQST 176
+P+ +L E+ + S++ G+GK G+ILK D++ + + ++ +
Sbjct: 19 TPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 1.94A {Thermus thermophilus HB8}
Length = 40
Score = 50.3 bits (121), Expect = 7e-07
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 128 PHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164
P +PS +L E G+ + ++GTG G+I + DV A
Sbjct: 1 PAAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRA 37
>1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; subunit binding domain; NMR {Homo
sapiens}
Length = 58
Score = 50.4 bits (121), Expect = 8e-07
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167
+P+ +L E+ + S++ G+GK G+ILK D++ + +
Sbjct: 11 TPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 49.6 bits (119), Expect = 1e-06
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166
PS K E G+ ++GTGK G++LK D+ A ++
Sbjct: 10 MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 2.09A {Thermus thermophilus HB8}
Length = 41
Score = 48.7 bits (117), Expect = 3e-06
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167
P+A KL E G+ ++ G+G G++ DV A R
Sbjct: 4 VPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAER 41
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex,
oxidoreductase, structural genomics, NPPSFA; HET: FAD
NAD; 1.80A {Thermus thermophilus HB8}
Length = 40
Score = 48.0 bits (115), Expect = 4e-06
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAI 165
P+A +L+ E G+SP++++GTG G+ILK DVM +
Sbjct: 3 MPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, polymorphism, disease mutation,
nucleotide-binding; HET: PG4; 1.5A {Homo sapiens}
Length = 94
Score = 47.7 bits (113), Expect = 5e-06
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 22 KILVPSLGESVNEA----TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77
+ S+ SV + V + G++V G+ + +E K+ + + +G + +
Sbjct: 17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76
Query: 78 SVAKGDTVTYGGFLGYI 94
GDTV G L +
Sbjct: 77 HCQAGDTVGEGDLLVEL 93
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding
protein, E3BD, protein binding; 1.55A {Homo sapiens}
PDB: 2f5z_K
Length = 64
Score = 46.4 bits (110), Expect = 1e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171
SP+A ++ + L S TG RG K D + + ++
Sbjct: 13 SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 54
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 41.9 bits (98), Expect = 2e-04
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95
+V +GE+V+ + L+ E K+ + +P G + +++V GDT+ G L I
Sbjct: 1087 SVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146
Query: 96 E 96
+
Sbjct: 1147 K 1147
Score = 27.3 bits (60), Expect = 8.0
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 65 EVPSPVSGKLHEMSVAKGDTVTYG 88
+ + + G + E+ V+ G+TV
Sbjct: 1079 HIGAQMPGSVTEVKVSVGETVKAN 1102
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA SAP; 2.00A
{Rhizobium etli cfn 42}
Length = 1165
Score = 41.6 bits (97), Expect = 3e-04
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
+ G++V G++LV +E K+ + + G + E+ V GD +
Sbjct: 1105 VISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAK 1157
Score = 27.8 bits (61), Expect = 5.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 65 EVPSPVSGKLHEMSVAKGDTVTYG 88
V +P+ G + + V+ G V G
Sbjct: 1097 HVGAPMPGVISRVFVSSGQAVNAG 1120
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 38.6 bits (89), Expect = 0.003
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
G V G+ L L K+ V SP+ G + ++ V K T+
Sbjct: 664 KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGD 711
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hammerhead structure, selenomethionine,
ligase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 38.0 bits (88), Expect = 0.004
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 44 IGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
+G+ V +G+ L +E K+ ++ + SG + + V G V +
Sbjct: 29 VGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFD 73
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid,
lipoyl, transport protein; 1.30A {Escherichia coli}
PDB: 3a7a_B
Length = 128
Score = 34.0 bits (78), Expect = 0.070
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
L E+G +V G+ E+ K ++ +PVSG++
Sbjct: 44 LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVA 79
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 33.4 bits (76), Expect = 0.11
Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 36 TVGTWLKEIGESVEIGEILVELE------TDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88
+ E+G+ V+ G+ L +E + + G + +++ + G+++
Sbjct: 622 LIVKVDVEVGQEVQEGQALCTIEAMKMENI------LRAEKKGVVAKINASAGNSLAVD 674
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 155 QILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSAS--NIFEKSSVSEELSEERVKM 212
+ + D +S ++ D NI + S+ + +
Sbjct: 291 EAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA 350
Query: 213 SRLRQTVAKRLKDAQNTAAILSTYNEV 239
+ RQTV L AQ AA ++T ++
Sbjct: 351 ASGRQTVDAALAAAQTNAAAMATLEKL 377
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich
structure, structural genomics, riken structural
genomics/proteomics initiative; 2.50A {Thermus
thermophilus} SCOP: b.84.1.1
Length = 128
Score = 31.0 bits (70), Expect = 0.63
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
L E+G VE GE + +E+ K ++ +PV+G++ E
Sbjct: 43 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVE 78
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 30.6 bits (67), Expect = 0.69
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
V+V + VSG+L +SVA GD V LG I
Sbjct: 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics; 2.01A {Thermus
thermophilus HB8}
Length = 345
Score = 30.4 bits (67), Expect = 0.81
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 275 HVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVV 312
++++ KGV+ D + NY IG + D G +V
Sbjct: 269 RLVKQKKGVHRYPDPRFVQGTNYADIGFELEEDTGRLV 306
>1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A
{Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A
Length = 231
Score = 30.1 bits (67), Expect = 1.0
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 320 KMNIVEIEREIARLG-REARAGHLSMRDLQNGTFTISNGGV 359
K ++E + + G++S D + G F I GV
Sbjct: 6 KRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGV 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 21/53 (39%)
Query: 59 TDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPN 111
TDK+ VP+P G I+ AR+ S+K SPN
Sbjct: 1212 TDKIGRSVPAPGKG---------------------ILTTAREHHSSVKYASPN 1243
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET:
LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A*
1htp_A*
Length = 131
Score = 29.8 bits (67), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
L E G SV G+ +E+ K T +V SP+SG++ E
Sbjct: 43 LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIE 78
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent
efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2;
2.80A {Cupriavidus metallidurans}
Length = 359
Score = 29.8 bits (66), Expect = 1.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYG 88
V+V P++G++ ++ GD V G
Sbjct: 57 LVKVLPPLAGRIVSLNKQLGDEVKAG 82
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP:
a.4.1.17
Length = 155
Score = 29.2 bits (65), Expect = 1.7
Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 27/147 (18%)
Query: 211 KMSRLRQTVAKRLKDAQNTAAILSTYNE--------------------VNMSRIISIRSR 250
+M + ++L Q AA L NE +N + + R++
Sbjct: 12 EMMAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71
Query: 251 YKDIFEKKHGIKLGFMG-FFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKG 309
+D K + F+ + S ++Q I G + + + + + TDK
Sbjct: 72 NQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLL-----TDKK 126
Query: 310 LVVPVIRHADKMNIVEIEREIARLGRE 336
++ + +A + N EIE ++ +L +
Sbjct: 127 VIEGDLGNATRTN-AEIEEQLQKLKKL 152
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport protein; 2.71A {Escherichia
coli}
Length = 277
Score = 29.3 bits (64), Expect = 2.0
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
EV VSG + + + +G + G L I
Sbjct: 22 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQI 53
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 29.0 bits (64), Expect = 2.0
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 17/76 (22%)
Query: 40 WLKEIGESVE----IGEILVELETDKVTVEVPSPVSGKL---HEM-SVAKGDTVTYGGFL 91
+GE V G I + D +E+ G + V +GD V
Sbjct: 280 PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDAVAV---- 335
Query: 92 GYIVEIARDEDESIKQ 107
+ D +++ Q
Sbjct: 336 -----VMEDYNDTWPQ 346
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module,
protein-protein interactions, linke segment; HET: EDO;
1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Length = 350
Score = 28.8 bits (63), Expect = 2.2
Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 20/184 (10%)
Query: 3 TGIINNTGILEE---KVRSMATKILVPSLGESVNEATVGTWLKEI-GESVEIGEILVELE 58
TG + KV T + SV A GT L + G+ ++ G +++
Sbjct: 104 AAAPEQTGTVAVVKFKVLKEETSSISFEDTTSVPNAIDGTVLFDWNGDRIQSGYSVIQPA 163
Query: 59 TDKVTVEVPSPVSGKLHEMSVAKGDTVTY-------GGFLGYIVEIARDE------DESI 105
+ + S ++ + + G+ + F GY V I D +
Sbjct: 164 VINLDMTKASYITMGYDKNAAEVGEIIKATVKINKITNFSGYQVNIKYDPTVLQAVNPKT 223
Query: 106 KQNSPNSTANGLPEITDQGFQMPHSPSASKL---IAESGLSPSDIKGTGKRGQILKSDVM 162
NS+ E+ P K+ I S + ++ ++ +
Sbjct: 224 GVAYTNSSLPTSGELLVSEDYGPIVQGVHKISEGILNLSRSYTALEVYRASESPEETGTL 283
Query: 163 AAIS 166
A +
Sbjct: 284 AVVG 287
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 28.6 bits (62), Expect = 2.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYG 88
EV V+G + + +G V G
Sbjct: 43 IAEVRPQVNGIILKRLFKEGSDVKAG 68
>2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A
{Mesorhizobium loti MAFF303099}
Length = 270
Score = 28.6 bits (63), Expect = 3.0
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 315 IRHADKMNIVEIEREIARLGREARAGHLSMRDLQNG-TFTISNGGVYGSLLSSPILNPPQ 373
+R +V + + G GH+S RD ++ +F ++ + I
Sbjct: 37 MRRKVFEELVTATKILLNEGIMDTFGHISARDPEDPASFFLAQKLAPSLITVDDIQRFNL 96
Query: 374 SGILGMHK 381
G ++
Sbjct: 97 DGETSDNR 104
>2edg_A Glycine cleavage system H protein; barrel-sandwich hybrid,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 27.9 bits (62), Expect = 4.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76
E+G ++ E LE+ K E+ SP+SG++ E
Sbjct: 46 EVGTKLKKQEEFGALESVKAASELYSPLSGEVTE 79
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 27.9 bits (61), Expect = 5.2
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 6/161 (3%)
Query: 185 FSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR- 243
F + + +L E + ++Q + A+ + Y + +++
Sbjct: 210 FEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQA 269
Query: 244 IISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVA 303
+I +R + K G V Q + +G V A
Sbjct: 270 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL--VTTNVCA 327
Query: 304 VGTDKGLVVPVIRH---ADKMNIVEIEREIARLGREARAGH 341
G D V VI DK + E + R+GR R G
Sbjct: 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5'
exonuclease, AP endonuclease; HET: PG4; 1.23A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A*
3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Length = 265
Score = 27.7 bits (61), Expect = 5.4
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 233 LSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHV--LQEIKGVNAEIDGD 290
+ ++N VN +R+ ++ GF+ +F + + LQEIK ++
Sbjct: 6 IISWN-VN-----GLRAVHRK----------GFLKWFMEEKPDILCLQEIKAAPEQLPRK 49
Query: 291 HIVYKNYCHI 300
+ Y
Sbjct: 50 LRHVEGYRSF 59
>2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A
{Clostridium botulinum}
Length = 444
Score = 27.5 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 221 KRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIK 262
K L ++ A L+ N+ S IS +YK IF +K+
Sbjct: 300 KALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFD 341
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 27.6 bits (61), Expect = 5.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94
V + VSG + GD V G L I
Sbjct: 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFII 32
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.133 0.363
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,667,434
Number of extensions: 175915
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 76
Length of query: 436
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 341
Effective length of database: 3,390,050
Effective search space: 1156007050
Effective search space used: 1156007050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.4 bits)