RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter asiaticus str. psy62] (436 letters) >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Score = 391 bits (1006), Expect = e-109 Identities = 133/439 (30%), Positives = 224/439 (51%), Gaps = 34/439 (7%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 MA + +P +GE ++E + W + G+ V ++L E++ DK VE+PSPV GK+ E+ Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60 Query: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMPH--------- 129 V +G T G L + + Q + E + ++ Sbjct: 61 VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120 Query: 130 -----------SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVD 178 PS K E G+ ++GTGK G++LK D+ A ++ + + Sbjct: 121 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEE 180 Query: 179 SHKKGVFSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNE 238 E E R KMS +R+ +AK + +++TA ++ +E Sbjct: 181 KAAPAAAKPATTEG-----------EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE 229 Query: 239 VNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEID--GDHIVYKN 296 +++++++ R ++K I +K IKL F+ + KA L+E +N ID + I+ K+ Sbjct: 230 ADVTKLVAHRKKFKAIAAEKG-IKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKH 288 Query: 297 YCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISN 356 Y +IG+A TD+GL+VPVI+HAD+ I + +EI L +AR G L+ +++ + TI+N Sbjct: 289 YYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITN 348 Query: 357 GGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAV 416 G G +P++N P+ ILG+ +I E+PIV DG+IV PM+ L+LS+DHR++DG A Sbjct: 349 IGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 408 Query: 417 TFLVRLKELLEDPERFILD 435 L +K LL DPE +++ Sbjct: 409 KALNHIKRLLSDPELLLME 427 >1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 layers); 2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Score = 266 bits (680), Expect = 9e-72 Identities = 128/231 (55%), Positives = 176/231 (76%) Query: 206 SEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGF 265 SE+RV M+RLR+ VA+RL +A+N+ A+L+T+NEVNM I+ +R +Y + FEK+HGI+LGF Sbjct: 3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62 Query: 266 MGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE 325 M F+ KA L+ VNA IDGD +VY NY + +AV T +GLV PV+R D + + + Sbjct: 63 MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122 Query: 326 IEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQER 385 IE++I L + R G L++ DL G FTI+NGGV+GSL+S+PI+NPPQS ILGMH I++R Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182 Query: 386 PIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 P+ +GQ+ I PMMYLALSYDHR++DG+E+V FLV +KELLEDP R +LD+ Sbjct: 183 PMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233 >3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Score = 253 bits (647), Expect = 6e-68 Identities = 79/232 (34%), Positives = 131/232 (56%) Query: 200 SVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKH 259 V ++ + ++ +R+ +AK + ++ EV+ + ++ R+ KD F+K+ Sbjct: 11 PVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEE 70 Query: 260 GIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHAD 319 G L + FF KA + L+E +N+ GD I+ +I +A+ L VPVI++AD Sbjct: 71 GYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNAD 130 Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379 + +I I REI+ L +AR G LS D++ GTFT+++ G +GS+ S I+N PQ+ IL + Sbjct: 131 EKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV 190 Query: 380 HKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPER 431 I +RP++ D I +R M+ L LS DHRI+DG A FL +K +E + Sbjct: 191 ESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISK 242 >3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Score = 236 bits (603), Expect = 7e-63 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 9/234 (3%) Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266 + + + +A+++ + EV + ++ +R R+ ++ Sbjct: 14 PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPF 68 Query: 267 GFFTKAASHVLQEIKGVNAEI----DGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMN 322 + L+ +N+ +G + H+G T++GL+VPV+ A N Sbjct: 69 ALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128 Query: 323 IVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKI 382 E+ +A L AR G L+ +L+ TFT+SN G G P++N P++ ILG+ I Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAI 188 Query: 383 QERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 + RP+V G++V RP M L +DHR+VDG + F+ L++L+E PE +LDL Sbjct: 189 KPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242 >1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* Length = 219 Score = 191 bits (488), Expect = 2e-49 Identities = 18/205 (8%), Positives = 56/205 (27%), Gaps = 16/205 (7%) Query: 227 QNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAE 286 + +++++ + KK+ K F F + ++ Sbjct: 27 SVAQCTYNQTVQLDITAFLKTV--------KKNKHK--FYPAFIHILARLMNAHPEFRMA 76 Query: 287 IDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGRE-ARAGHLSMR 345 + +V + H V ++ + + + ++ + Sbjct: 77 MKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPK 136 Query: 346 DLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSY 405 F +S + + + + + + + +M LA+ Sbjct: 137 GFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTM-GKYYTQGD----KVLMPLAIQV 191 Query: 406 DHRIVDGKEAVTFLVRLKELLEDPE 430 H + DG L L++ ++ + Sbjct: 192 HHAVCDGFHVGRMLNELQQYCDEWQ 216 >3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Score = 188 bits (480), Expect = 1e-48 Identities = 18/196 (9%), Positives = 51/196 (26%), Gaps = 17/196 (8%) Query: 238 EVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNY 297 +++++ + F + + + + I D ++ + Sbjct: 33 KIDITTLKKSLDDSA----------YKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDS 82 Query: 298 CHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRD--LQNGTFTIS 355 V + + +I + + ++ IS Sbjct: 83 VDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNIS 142 Query: 356 NGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEA 415 + + + + + Q R ++ L++ H + DG Sbjct: 143 ALPWVNFDSFNLNVANFTDYFAPIITMAKYQ-----QEGDRLLLPLSVQVHHAVCDGFHV 197 Query: 416 VTFLVRLKELLEDPER 431 F+ RL+EL + Sbjct: 198 ARFINRLQELCNSKLK 213 >3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Score = 188 bits (479), Expect = 2e-48 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 4/231 (1%) Query: 206 SEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGF 265 + +S +R+ +A+RL ++ T +VNM ++ +R I E + I Sbjct: 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKIS--V 68 Query: 266 MGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE 325 F KA++ ++ N+ I + + VAV T GL+ P++ +A + Sbjct: 69 NDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVET 128 Query: 326 IEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQER 385 I ++ L +AR G L + Q GTFTISN G++G S I+NPPQ+ IL + +++ Sbjct: 129 IANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDK 188 Query: 386 PIVEDGQ--IVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 + D + + MM + LS DHR+VDG +L ++ LE P +L Sbjct: 189 LVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 >1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Score = 182 bits (463), Expect = 1e-46 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 3/235 (1%) Query: 202 SEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGI 261 ++ E V M+RL Q A L + ++ + +++ + + R + +K G+ Sbjct: 10 AKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFR-VAQKAVAEKAGV 68 Query: 262 KLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV--YKNYCHIGVAVGTDKGLVVPVIRHAD 319 KL + KA +++L+E+ N+ + K Y HIG AV T GL+VPVIR+ D Sbjct: 69 KLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVD 128 Query: 320 KMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGM 379 + +++++ E A L +AR+ L +Q FTIS+ G G +PI+N P+ ILG+ Sbjct: 129 QKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGV 188 Query: 380 HKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFIL 434 K +P+ + R M+ L+LSYD R+++G A F RL +LL D +L Sbjct: 189 SKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 >2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Score = 180 bits (456), Expect = 6e-46 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 207 EERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFM 266 + + + + K + A +EV+++ ++ +R K I GIKL FM Sbjct: 31 DRTEPVKGFHKAMVKTMSAALKIPH-FGYCDEVDLTELVKLREELKPIAFA-RGIKLSFM 88 Query: 267 GFFTKAASHVLQEIKGVNAEI--DGDHIVYKNYCHIGVAVGTDKGLVVPVIRHADKMNIV 324 FF KAAS L + +NA + + +I YK +IG+A+ T++GL+VP +++ +I Sbjct: 89 PFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIF 148 Query: 325 EIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQE 384 EI E+ RL + AG LS DL GTFT+SN G G + P++ PP+ I + I+ Sbjct: 149 EIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKA 208 Query: 385 RPIV-EDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVRLKELLEDPERFILDL 436 P E G++ +M ++ S DHRI+DG F K LE+P +LDL Sbjct: 209 LPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261 >2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Length = 217 Score = 165 bits (419), Expect = 2e-41 Identities = 26/198 (13%), Positives = 53/198 (26%), Gaps = 23/198 (11%) Query: 238 EVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDH-IVYKN 296 EV F + A EI ID D +V + Sbjct: 35 EVECGGARQRAKAAG----------QSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYD 84 Query: 297 YCHIGVAVGTDKGLVVPVIRHADKMNIVEIEREIARLGRE-------ARAGHLSMRDLQN 349 + + + R + +E + A + + D Sbjct: 85 TIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDY 144 Query: 350 GTFTISNGGVYGSLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRI 409 G +S + + + I+ +G R +M +A++ H Sbjct: 145 GLILLSATPDLYFTSITGTQEKRSGNNYPLLNA-GKAIIREG----RLVMPIAMTIHHGF 199 Query: 410 VDGKEAVTFLVRLKELLE 427 +DG F ++++ L+ Sbjct: 200 IDGHHLSLFYKKVEDFLK 217 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Length = 229 Score = 108 bits (271), Expect = 2e-24 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 19/169 (11%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 KIL+PSL ++ E + WLK+ GE+V G+ L E+ETDK V + + G L ++ V + Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64 Query: 82 GDTVTYGGFLGYIVEIARDEDES-------------------IKQNSPNSTANGLPEITD 122 G G L ++ ++ + P + E Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIP 124 Query: 123 QGFQMPHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171 + SP+A ++ + L S TG RG K D + + ++ Sbjct: 125 GTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 173 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 Score = 84.6 bits (209), Expect = 4e-17 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 ++L+P+L ++ TV W K++GE + G++L E+ETDK T+ G L ++ Sbjct: 26 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 85 Query: 79 VAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEI 120 V +G V G L IVE + + P + P++ Sbjct: 86 VPEGTRDVPLGTPLCIIVEKE-ADISAFADYRPTEVTDLKPQV 127 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Score = 83.6 bits (207), Expect = 7e-17 Identities = 37/77 (48%), Positives = 49/77 (63%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 + ILVP L ESV +ATV TW K+ G++V E+LVE+ETDKV +EVP+ G L + Sbjct: 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLE 61 Query: 80 AKGDTVTYGGFLGYIVE 96 +G TVT LG + E Sbjct: 62 DEGTTVTSRQILGRLRE 78 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 Score = 80.9 bits (200), Expect = 5e-16 Identities = 20/86 (23%), Positives = 38/86 (44%) Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77 + + +GE + E TV W + G++V + + E+++DK +V + S G + ++ Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61 Query: 78 SVAKGDTVTYGGFLGYIVEIARDEDE 103 D G L I A + E Sbjct: 62 YYNLDDIAYVGKPLVDIETEALKDLE 87 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 Score = 79.6 bits (196), Expect = 1e-15 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77 S K+ +PSL ++ T+ W K+ G+ + G+++ E+ETDK TV S + ++ Sbjct: 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKI 64 Query: 78 SVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLP 118 VA+G V G + V ++ E+ K + +S+A P Sbjct: 65 LVAEGTRDVPIGAIICITVG-KPEDIEAFKNYTLDSSAASGP 105 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Score = 78.4 bits (193), Expect = 3e-15 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 5/97 (5%) Query: 18 SMATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77 S KIL+PSL ++ E + WLK+ GE+V G+ L E+ETDK V + + G L ++ Sbjct: 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 64 Query: 78 SVAKGD-TVTYGGFLGYIVEIARDEDESIKQNSPNST 113 V +G + G +G IVE E E K S S+ Sbjct: 65 VVEEGSKNIRLGSLIGLIVE----EGEDWKHVSGPSS 97 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 Score = 76.8 bits (189), Expect = 9e-15 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 ++L+P+L ++ TV W K++GE + G++L E+ETD T+ G L ++ Sbjct: 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63 Query: 79 VAKGD-TVTYGGFLGYIVE 96 V +G V G L IVE Sbjct: 64 VPEGTRDVPLGTPLCIIVE 82 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 Score = 76.8 bits (189), Expect = 9e-15 Identities = 32/77 (41%), Positives = 48/77 (62%) Query: 20 ATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSV 79 A I P+ ES+ + TV TW K+ GE+V+ E++V++ETDKV +EV + G + E+ Sbjct: 1 AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVK 60 Query: 80 AKGDTVTYGGFLGYIVE 96 +GDTV G LG + E Sbjct: 61 NEGDTVLSGELLGKLTE 77 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Score = 72.5 bits (178), Expect = 2e-13 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M ++ VP +G E V + ++G+ V + L+ +E DK ++EVP+P +G + E+ Sbjct: 1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58 Query: 79 VAKGDTVTYGGFLGYI 94 V GD V G + Sbjct: 59 VNVGDKVKTGSLIMIF 74 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 Score = 69.0 bits (169), Expect = 2e-12 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 ++ VP +G + +G+++ + + L+ LETDK T++VP+ V+G + E+ V Sbjct: 4 ELKVPDIGGHE-NVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62 Query: 82 GDTVTYGGFLGYI 94 GD ++ GG + + Sbjct: 63 GDKISEGGLIVVV 75 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 Score = 65.5 bits (160), Expect = 2e-11 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 26 PSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTV 85 P++ S + + + E G VE G E+E K+ + + G++ + G + Sbjct: 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVL 63 Query: 86 TYGGFLGYIVEIARDEDE 103 G + + D+ E Sbjct: 64 EAGCVV---ARLELDDLE 78 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 Score = 65.1 bits (159), Expect = 3e-11 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 I VP +G + V L + G+ +E+ + LV LE+ K ++EVPSP +G + +SV Sbjct: 3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59 Query: 82 GDTVTYGGFLGYI 94 GD + G + + Sbjct: 60 GDKLKEGDAIIEL 72 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 61.5 bits (149), Expect = 4e-10 Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 175/408 (42%) Query: 86 TYGGFLGYIV--------EIARDEDESIKQNSPNSTANGL--------PEIT-DQGF--- 125 TY +G ++ E+ R ++ K + GL P T D+ + Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-----QGLNILEWLENPSNTPDKDYLLS 233 Query: 126 -----------QMPHSPSASKLIAESGLSPSD----IKG-TG-KRGQILKSDVMAAISRS 168 Q+ H +KL G +P + +KG TG +G + AI+ + Sbjct: 234 IPISCPLIGVIQLAHYVVTAKL---LGFTPGELRSYLKGATGHSQGLV----TAVAIAET 286 Query: 169 ---ES--------------------------SVDQSTV-DS--HKKGVFSRIINSASNIF 196 ES S+ S + DS + +GV S ++ S SN+ Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNL- 344 Query: 197 EKSSVSEEL--------SEERVKMSRL----RQTV-----------AKRLKDAQNTAAIL 233 + V + + + ++V++S L + V L+ A+ + Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--- 400 Query: 234 STYNEVNMSRI------ISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEI 287 ++ SRI + +R+ + H L A+ + +++ N Sbjct: 401 ----GLDQSRIPFSERKLKFSNRFLPVASPFHSHLL------VPASDLINKDLVKNNVSF 450 Query: 288 DGD--HI-VYKNYCHIGVAVGTDKGLVVPVIRHADKMNIVE-IEREIARL---------- 333 + I VY + G+D +R +I E I I RL Sbjct: 451 NAKDIQIPVYDTF------DGSD-------LRVLSG-SISERIVDCIIRLPVKWETTTQF 496 Query: 334 ----------GREARAGHLSMRDLQNGTFTISNGGVY----GSLLSSP 367 G + G L+ R ++GT GV G+L +P Sbjct: 497 KATHILDFGPGGASGLGVLTHR-NKDGT------GVRVIVAGTLDINP 537 Score = 52.3 bits (125), Expect = 2e-07 Identities = 77/469 (16%), Positives = 138/469 (29%), Gaps = 176/469 (37%) Query: 18 SMATKILVPS----LGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVP-SPVSG 72 S+ +LVP+ + + E + K + E E D + P +P Sbjct: 15 SLEHVLLVPTASFFIASQLQE----QFNKILPEPTE------GFAAD----DEPTTPA-- 58 Query: 73 KLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQ---MP- 128 E+ V K FLGY+ + L + F+ + Sbjct: 59 ---EL-VGK--------FLGYVSSLVEPSK-------VGQFDQVLNLCLTE-FENCYLEG 98 Query: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMA--AISRSESSVDQS----TVDS 179 H+ L A+ L + K +++K+ + A R S V Sbjct: 99 NDIHA-----LAAK--LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151 Query: 180 HKKGVFSRIINSASNI---FEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTY 236 + + I N F EEL + L QT + D ++ Sbjct: 152 GNAQLVA-IFGGQGNTDDYF------EELRD-------LYQTYHVLVGD------LIKFS 191 Query: 237 NEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIV--- 293 E +S +I + +F G+ +L+ ++ + D D+++ Sbjct: 192 AET-LSELIRTTLDAEKVF--TQGLN-------------ILEWLENPSNTPDKDYLLSIP 235 Query: 294 -------------YKNYCHI-GV-----------AVGTDKGLVVPVI-----------RH 317 Y + G A G +GLV V Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295 Query: 318 ADKMNIVEIEREI-ARLGREARAGHLSMRD--LQNGTFTISNG-GVYGSLLSSPILNPPQ 373 K + + I R EA + S+ L++ ++ N GV +LS I N Q Sbjct: 296 VRK--AITVLFFIGVR-CYEA-YPNTSLPPSILED---SLENNEGVPSPMLS--ISNLTQ 346 Query: 374 SGILGMHKIQER--------PIVEDGQIVIRPMMYLAL--SYDHRIVDG 412 ++Q+ P Q+ ++L + +V G Sbjct: 347 E------QVQDYVNKTNSHLP--AGKQV------EISLVNGAKNLVVSG 381 Score = 34.5 bits (79), Expect = 0.047 Identities = 30/264 (11%), Positives = 67/264 (25%), Gaps = 102/264 (38%) Query: 225 DAQNTAAILSTYNEVNMSRIISIR-----SRYKDIFEKKHG---------------IKL- 263 DA +T + ++ + ++ S+ ++ F K +L Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61 Query: 264 -GFMGFFTKAASHVLQEIKGVNAEI-------------DGDHIVYKNYCHIGVAVGTDKG 309 F+G+ +S V G ++ +G+ I H +A + Sbjct: 62 GKFLGYV---SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------H-ALAAKLLQE 111 Query: 310 LVVPVIRHADKMNIVEIE-REIARLGREARAGHLS--MRDLQNGTFTISN--GGVYGSLL 364 + +++ R S R + G + GG Sbjct: 112 NDTTL---VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG------ 162 Query: 365 SSPILNPPQSGILG-MHKIQE-----RPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTF 418 Q ++++ +V D +I+ + Sbjct: 163 --------QGNTDDYFEELRDLYQTYHVLVGD---LIKFS-------------AE----- 193 Query: 419 LVRLKELLEDPERFI------LDL 436 L EL+ L++ Sbjct: 194 --TLSELIRTTLDAEKVFTQGLNI 215 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 Score = 55.3 bits (133), Expect = 3e-08 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%) Query: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78 M ++ VP + E V + ++G+ V + L+ +E DK ++EVP+P +G + E+ Sbjct: 1 MVKEVNVPDIVE------VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 54 Query: 79 VAKGDTVTYGGFLGYI-VEIARDEDESIKQ 107 V GD V G + VE A KQ Sbjct: 55 VNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Score = 54.2 bits (130), Expect = 5e-08 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 22 KILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAK 81 K P++ S + + + E G VE G E+E K+ + + G++ + Sbjct: 13 KENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRP 71 Query: 82 GDTVTYGGFLGYIVEIARDEDESIKQNSPNS 112 G + G + + D+ + + P+S Sbjct: 72 GAVLEAGCVV---ARLELDDPSKVHPSGPSS 99 Score = 28.8 bits (64), Expect = 2.3 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%) Query: 45 GESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDE 103 G S G + E E D + SP +GKL + +V G V G +E+ + Sbjct: 1 GSSGSSGTCVFEKEND--PTVLRSPSAGKLTQYTVEDGGHVEAGSSY-AEMEVMKMIMT 56 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 Score = 53.7 bits (129), Expect = 9e-08 Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 TV L + G++V+ G+ ++ LE K+ E+ +P GK+ ++ V + D V G L I Sbjct: 18 TVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 >1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2btg_A 2bth_A 2cyu_A Length = 51 Score = 51.9 bits (125), Expect = 3e-07 Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRS 168 SP+ +L+AE L S IKGTG G++ + DV ++++ Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKA 51 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 Score = 51.7 bits (124), Expect = 3e-07 Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 V L +G+ V +G+ L+ LE K+ E+PSP G + + V +G+ V G L + Sbjct: 15 KVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73 >1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 Score = 50.5 bits (121), Expect = 7e-07 Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171 P+A +L E G+ S +KGTG G I DV + + Sbjct: 8 MPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKA 49 >2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 Score = 50.5 bits (121), Expect = 7e-07 Identities = 12/47 (25%), Positives = 28/47 (59%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQST 176 +P+ +L E+ + S++ G+GK G+ILK D++ + + ++ + Sbjct: 19 TPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65 >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Length = 40 Score = 50.3 bits (121), Expect = 7e-07 Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 128 PHSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAA 164 P +PS +L E G+ + ++GTG G+I + DV A Sbjct: 1 PAAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRA 37 >1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens} Length = 58 Score = 50.4 bits (121), Expect = 8e-07 Identities = 12/38 (31%), Positives = 25/38 (65%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167 +P+ +L E+ + S++ G+GK G+ILK D++ + + Sbjct: 11 TPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 >1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 Score = 49.6 bits (119), Expect = 1e-06 Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAIS 166 PS K E G+ ++GTGK G++LK D+ A ++ Sbjct: 10 MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 >2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8} Length = 41 Score = 48.7 bits (117), Expect = 3e-06 Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISR 167 P+A KL E G+ ++ G+G G++ DV A R Sbjct: 4 VPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAER 41 >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8} Length = 40 Score = 48.0 bits (115), Expect = 4e-06 Identities = 17/36 (47%), Positives = 27/36 (75%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAI 165 P+A +L+ E G+SP++++GTG G+ILK DVM + Sbjct: 3 MPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} Length = 94 Score = 47.7 bits (113), Expect = 5e-06 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 22 KILVPSLGESVNEA----TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEM 77 + S+ SV + V + G++V G+ + +E K+ + + +G + + Sbjct: 17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76 Query: 78 SVAKGDTVTYGGFLGYI 94 GDTV G L + Sbjct: 77 HCQAGDTVGEGDLLVEL 93 >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 Score = 46.4 bits (110), Expect = 1e-05 Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 130 SPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESS 171 SP+A ++ + L S TG RG K D + + ++ Sbjct: 13 SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 54 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Score = 41.9 bits (98), Expect = 2e-04 Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIV 95 +V +GE+V+ + L+ E K+ + +P G + +++V GDT+ G L I Sbjct: 1087 SVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIE 1146 Query: 96 E 96 + Sbjct: 1147 K 1147 Score = 27.3 bits (60), Expect = 8.0 Identities = 6/24 (25%), Positives = 13/24 (54%) Query: 65 EVPSPVSGKLHEMSVAKGDTVTYG 88 + + + G + E+ V+ G+TV Sbjct: 1079 HIGAQMPGSVTEVKVSVGETVKAN 1102 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Length = 1165 Score = 41.6 bits (97), Expect = 3e-04 Identities = 12/53 (22%), Positives = 24/53 (45%) Query: 36 TVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 + G++V G++LV +E K+ + + G + E+ V GD + Sbjct: 1105 VISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAK 1157 Score = 27.8 bits (61), Expect = 5.5 Identities = 7/24 (29%), Positives = 12/24 (50%) Query: 65 EVPSPVSGKLHEMSVAKGDTVTYG 88 V +P+ G + + V+ G V G Sbjct: 1097 HVGAPMPGVISRVFVSSGQAVNAG 1120 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 Score = 38.6 bits (89), Expect = 0.003 Identities = 13/48 (27%), Positives = 20/48 (41%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 G V G+ L L K+ V SP+ G + ++ V K T+ Sbjct: 664 KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGD 711 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80 Score = 38.0 bits (88), Expect = 0.004 Identities = 11/45 (24%), Positives = 23/45 (51%) Query: 44 IGESVEIGEILVELETDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 +G+ V +G+ L +E K+ ++ + SG + + V G V + Sbjct: 29 VGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFD 73 >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B Length = 128 Score = 34.0 bits (78), Expect = 0.070 Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 L E+G +V G+ E+ K ++ +PVSG++ Sbjct: 44 LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVA 79 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 Score = 33.4 bits (76), Expect = 0.11 Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 12/59 (20%) Query: 36 TVGTWLKEIGESVEIGEILVELE------TDKVTVEVPSPVSGKLHEMSVAKGDTVTYG 88 + E+G+ V+ G+ L +E + + G + +++ + G+++ Sbjct: 622 LIVKVDVEVGQEVQEGQALCTIEAMKMENI------LRAEKKGVVAKINASAGNSLAVD 674 >3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD, sugar transport, transport, apoptosis, cytoplasm, disease mutation; 3.50A {Escherichia coli k-12} PDB: 3ior_A 3iou_A 3iov_A 3iow_A Length = 449 Score = 32.7 bits (73), Expect = 0.15 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%) Query: 155 QILKSDVMAAISRSESSVDQSTVDSHKKGVFSRIINSAS--NIFEKSSVSEELSEERVKM 212 + + D +S ++ D NI + S+ + + Sbjct: 291 EAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA 350 Query: 213 SRLRQTVAKRLKDAQNTAAILSTYNEV 239 + RQTV L AQ AA ++T ++ Sbjct: 351 ASGRQTVDAALAAAQTNAAAMATLEKL 377 >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Length = 128 Score = 31.0 bits (70), Expect = 0.63 Identities = 13/36 (36%), Positives = 23/36 (63%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 L E+G VE GE + +E+ K ++ +PV+G++ E Sbjct: 43 LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVE 78 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Length = 341 Score = 30.6 bits (67), Expect = 0.69 Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 V+V + VSG+L +SVA GD V LG I Sbjct: 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62 >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8} Length = 345 Score = 30.4 bits (67), Expect = 0.81 Identities = 11/38 (28%), Positives = 19/38 (50%) Query: 275 HVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKGLVV 312 ++++ KGV+ D + NY IG + D G +V Sbjct: 269 RLVKQKKGVHRYPDPRFVQGTNYADIGFELEEDTGRLV 306 >1k0w_A L-ribulose 5 phosphate 4-epimerase; aldolase, isomerase; 2.10A {Escherichia coli} SCOP: c.74.1.1 PDB: 1jdi_A Length = 231 Score = 30.1 bits (67), Expect = 1.0 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 320 KMNIVEIEREIARLG-REARAGHLSMRDLQNGTFTISNGGV 359 K ++E + + G++S D + G F I GV Sbjct: 6 KRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGV 46 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.8 bits (66), Expect = 1.1 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 21/53 (39%) Query: 59 TDKVTVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNSPN 111 TDK+ VP+P G I+ AR+ S+K SPN Sbjct: 1212 TDKIGRSVPAPGKG---------------------ILTTAREHHSSVKYASPN 1243 >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Length = 131 Score = 29.8 bits (67), Expect = 1.1 Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 41 LKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 L E G SV G+ +E+ K T +V SP+SG++ E Sbjct: 43 LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIE 78 >3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} Length = 359 Score = 29.8 bits (66), Expect = 1.4 Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYG 88 V+V P++G++ ++ GD V G Sbjct: 57 LVKVLPPLAGRIVSLNKQLGDEVKAG 82 >2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17 Length = 155 Score = 29.2 bits (65), Expect = 1.7 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 27/147 (18%) Query: 211 KMSRLRQTVAKRLKDAQNTAAILSTYNE--------------------VNMSRIISIRSR 250 +M + ++L Q AA L NE +N + + R++ Sbjct: 12 EMMAKLDELKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 Query: 251 YKDIFEKKHGIKLGFMG-FFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVAVGTDKG 309 +D K + F+ + S ++Q I G + + + + + TDK Sbjct: 72 NQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKAMQLYMQRFGLL-----TDKK 126 Query: 310 LVVPVIRHADKMNIVEIEREIARLGRE 336 ++ + +A + N EIE ++ +L + Sbjct: 127 VIEGDLGNATRTN-AEIEEQLQKLKKL 152 >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Length = 277 Score = 29.3 bits (64), Expect = 2.0 Identities = 9/32 (28%), Positives = 14/32 (43%) Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 EV VSG + + + +G + G L I Sbjct: 22 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQI 53 >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Length = 354 Score = 29.0 bits (64), Expect = 2.0 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 17/76 (22%) Query: 40 WLKEIGESVE----IGEILVELETDKVTVEVPSPVSGKL---HEM-SVAKGDTVTYGGFL 91 +GE V G I + D +E+ G + V +GD V Sbjct: 280 PTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDAVAV---- 335 Query: 92 GYIVEIARDEDESIKQ 107 + D +++ Q Sbjct: 336 -----VMEDYNDTWPQ 346 >3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A Length = 350 Score = 28.8 bits (63), Expect = 2.2 Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 20/184 (10%) Query: 3 TGIINNTGILEE---KVRSMATKILVPSLGESVNEATVGTWLKEI-GESVEIGEILVELE 58 TG + KV T + SV A GT L + G+ ++ G +++ Sbjct: 104 AAAPEQTGTVAVVKFKVLKEETSSISFEDTTSVPNAIDGTVLFDWNGDRIQSGYSVIQPA 163 Query: 59 TDKVTVEVPSPVSGKLHEMSVAKGDTVTY-------GGFLGYIVEIARDE------DESI 105 + + S ++ + + G+ + F GY V I D + Sbjct: 164 VINLDMTKASYITMGYDKNAAEVGEIIKATVKINKITNFSGYQVNIKYDPTVLQAVNPKT 223 Query: 106 KQNSPNSTANGLPEITDQGFQMPHSPSASKL---IAESGLSPSDIKGTGKRGQILKSDVM 162 NS+ E+ P K+ I S + ++ ++ + Sbjct: 224 GVAYTNSSLPTSGELLVSEDYGPIVQGVHKISEGILNLSRSYTALEVYRASESPEETGTL 283 Query: 163 AAIS 166 A + Sbjct: 284 AVVG 287 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Length = 369 Score = 28.6 bits (62), Expect = 2.9 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 63 TVEVPSPVSGKLHEMSVAKGDTVTYG 88 EV V+G + + +G V G Sbjct: 43 IAEVRPQVNGIILKRLFKEGSDVKAG 68 >2z7b_A MLR6791 protein; class II aldolase superfamily, lyase; 1.90A {Mesorhizobium loti MAFF303099} Length = 270 Score = 28.6 bits (63), Expect = 3.0 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 315 IRHADKMNIVEIEREIARLGREARAGHLSMRDLQNG-TFTISNGGVYGSLLSSPILNPPQ 373 +R +V + + G GH+S RD ++ +F ++ + I Sbjct: 37 MRRKVFEELVTATKILLNEGIMDTFGHISARDPEDPASFFLAQKLAPSLITVDDIQRFNL 96 Query: 374 SGILGMHK 381 G ++ Sbjct: 97 DGETSDNR 104 >2edg_A Glycine cleavage system H protein; barrel-sandwich hybrid, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130 Score = 27.9 bits (62), Expect = 4.9 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 43 EIGESVEIGEILVELETDKVTVEVPSPVSGKLHE 76 E+G ++ E LE+ K E+ SP+SG++ E Sbjct: 46 EVGTKLKKQEEFGALESVKAASELYSPLSGEVTE 79 >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Score = 27.9 bits (61), Expect = 5.2 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 6/161 (3%) Query: 185 FSRIINSASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSR- 243 F + + +L E + ++Q + A+ + Y + +++ Sbjct: 210 FEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQA 269 Query: 244 IISIRSRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIGVA 303 +I +R + K G V Q + +G V A Sbjct: 270 MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL--VTTNVCA 327 Query: 304 VGTDKGLVVPVIRH---ADKMNIVEIEREIARLGREARAGH 341 G D V VI DK + E + R+GR R G Sbjct: 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 >3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Length = 265 Score = 27.7 bits (61), Expect = 5.4 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 18/70 (25%) Query: 233 LSTYNEVNMSRIISIRSRYKDIFEKKHGIKLGFMGFFTKAASHV--LQEIKGVNAEIDGD 290 + ++N VN +R+ ++ GF+ +F + + LQEIK ++ Sbjct: 6 IISWN-VN-----GLRAVHRK----------GFLKWFMEEKPDILCLQEIKAAPEQLPRK 49 Query: 291 HIVYKNYCHI 300 + Y Sbjct: 50 LRHVEGYRSF 59 >2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A {Clostridium botulinum} Length = 444 Score = 27.5 bits (61), Expect = 5.7 Identities = 13/42 (30%), Positives = 20/42 (47%) Query: 221 KRLKDAQNTAAILSTYNEVNMSRIISIRSRYKDIFEKKHGIK 262 K L ++ A L+ N+ S IS +YK IF +K+ Sbjct: 300 KALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFD 341 >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Length = 116 Score = 27.6 bits (61), Expect = 5.9 Identities = 10/31 (32%), Positives = 12/31 (38%) Query: 64 VEVPSPVSGKLHEMSVAKGDTVTYGGFLGYI 94 V + VSG + GD V G L I Sbjct: 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFII 32 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.133 0.363 Gapped Lambda K H 0.267 0.0584 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,667,434 Number of extensions: 175915 Number of successful extensions: 533 Number of sequences better than 10.0: 1 Number of HSP's gapped: 504 Number of HSP's successfully gapped: 76 Length of query: 436 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 341 Effective length of database: 3,390,050 Effective search space: 1156007050 Effective search space used: 1156007050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 58 (26.4 bits)