HHsearch alignment for GI: 254781053 and conserved domain: COG0493

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=99.86  E-value=1.9e-22  Score=181.90  Aligned_cols=282  Identities=27%  Similarity=0.332  Sum_probs=182.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
T Consensus       125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~--------------------------kl~----  172 (457)
T COG0493         125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDF--------------------------KLP----  172 (457)
T ss_pred             EEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CCHH--------------------------HCC----
T ss_conf             7999888951555889998689879982666777447-9814-8446--------------------------464----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
T Consensus       173 ----k~i~d~~i----~~l~~~Gv~~~~~~~v--G-~~it~----~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~g--  233 (457)
T COG0493         173 ----KDILDRRL----ELLERSGVEFKLNVRV--G-RDITL----EELLKEYDAVFLATGAGKPRPLDIPGEDA--KG--  233 (457)
T ss_pred             ----CHHHHHHH----HHHHHCCCEEEECCEE--C-CCCCH----HHHHHHHCEEEEECCCCCCCCCCCCCCCC--CC--
T ss_conf             ----20689999----9998749099986677--9-96789----99865328799932667887689888677--77--


Q ss_pred             EEEECCCC---------CC--CCCC----CCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC--CCCCCCCCCCCCC
Q ss_conf             45305741---------11--1113----332101234454332013220122-01110000111--2212222112222
Q gi|254781053|r  161 IVSSTGAL---------SF--SSVP----KNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI--LNGMDKEIAAHCL  222 (466)
Q Consensus       161 ~~t~~~~~---------~l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l--l~~~d~~~~~~~~  222 (466)
T Consensus       234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
T COG0493         234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEV  313 (457)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf             61687999999998603565446777789858998998888999888874175399992355665667854441067887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCEEE---EE--EE--------------CCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf             22222222232200234420146872169---99--72--------------1332110000023204531210367840
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVV---YR--ST--------------DDEPINIEADAVLVAAGRRPYTKGLGLE  283 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~--~~--------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le  283 (466)
T Consensus       314 ~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~  393 (457)
T COG0493         314 RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLL  393 (457)
T ss_pred             HHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             76775477543156763586658980840112212446665553445773226855875456688666136675432110


Q ss_pred             EEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             000126764223337763-33026848702433354344300012320120111
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
T Consensus       394 ~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         394 EFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID  447 (457)
T ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf             012353767855103222124687636575442361341407640329998756