HHsearch alignment for GI: 254781053 and conserved domain: COG0493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=99.86 E-value=1.9e-22 Score=181.90 Aligned_cols=282 Identities=27% Similarity=0.332 Sum_probs=182.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466)
T Consensus 125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~--------------------------kl~---- 172 (457)
T COG0493 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDF--------------------------KLP---- 172 (457)
T ss_pred EEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CCHH--------------------------HCC----
T ss_conf 7999888951555889998689879982666777447-9814-8446--------------------------464----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466)
T Consensus 173 ----k~i~d~~i----~~l~~~Gv~~~~~~~v--G-~~it~----~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~g-- 233 (457)
T COG0493 173 ----KDILDRRL----ELLERSGVEFKLNVRV--G-RDITL----EELLKEYDAVFLATGAGKPRPLDIPGEDA--KG-- 233 (457)
T ss_pred ----CHHHHHHH----HHHHHCCCEEEECCEE--C-CCCCH----HHHHHHHCEEEEECCCCCCCCCCCCCCCC--CC--
T ss_conf ----20689999----9998749099986677--9-96789----99865328799932667887689888677--77--
Q ss_pred EEEECCCC---------CC--CCCC----CCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC--CCCCCCCCCCCCC
Q ss_conf 45305741---------11--1113----332101234454332013220122-01110000111--2212222112222
Q gi|254781053|r 161 IVSSTGAL---------SF--SSVP----KNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI--LNGMDKEIAAHCL 222 (466)
Q Consensus 161 ~~t~~~~~---------~l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l--l~~~d~~~~~~~~ 222 (466)
T Consensus 234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~ 313 (457)
T COG0493 234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEV 313 (457)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 61687999999998603565446777789858998998888999888874175399992355665667854441067887
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCEEE---EE--EE--------------CCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf 22222222232200234420146872169---99--72--------------1332110000023204531210367840
Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVV---YR--ST--------------DDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466)
Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~--~~--------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466)
T Consensus 314 ~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~ 393 (457)
T COG0493 314 RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLL 393 (457)
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf 76775477543156763586658980840112212446665553445773226855875456688666136675432110
Q ss_pred EEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf 000126764223337763-33026848702433354344300012320120111
Q gi|254781053|r 284 EIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 284 ~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 394 ~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 394 EFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf 012353767855103222124687636575442361341407640329998756