HHsearch alignment for GI: 254781053 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=100.00 E-value=7e-35 Score=272.44 Aligned_cols=282 Identities=22% Similarity=0.323 Sum_probs=200.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
Q ss_conf 31999989866899999999879--9399993799715025136673709899999999999986675581647753289
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL 80 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~ 80 (466)
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------l~~plL~e----------va~g~l~~~~i~~p~ 63 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------LFTPLLYE----------VATGTLSESEIAIPL 63 (405)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----------CCCHHHHH----------HHCCCCCHHHEECCH
T ss_conf 5699989867999999976416788718999188766----------66303355----------632877756521308
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCC--CCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCC
Q ss_conf 999999999999877777876400-431011001110022--21023575211232210000467665244--4576653
Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSN--NKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSID 155 (466)
Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~--~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~ 155 (466)
T Consensus 64 ------------------~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~---~~~i~YD~LVvalGs~~~~fgi~G~~E- 121 (405)
T COG1252 64 ------------------RALLRKSGNVQFVQGEVTDIDRDAKKVTLAD---LGEISYDYLVVALGSETNYFGIPGAAE- 121 (405)
T ss_pred ------------------HHHHCCCCCEEEEEEEEEEECCCCCEEEECC---CCCCCCCEEEEECCCCCCCCCCCCHHH-
T ss_conf ------------------9984235744899978999715679899578---870236389994587667689978787-
Q ss_pred CCCEEEEEECCCCCCC-----------CCCC-----CCCCCCCCCCCCCCCHHHHHCC-------------CCHHHHHHC
Q ss_conf 2100245305741111-----------1133-----3210123445433201322012-------------201110000
Q gi|254781053|r 156 FDEQVIVSSTGALSFS-----------SVPK-----NLLVIGAGVIGLELGSVWTRLG-------------SCVKIIEHS 206 (466)
Q Consensus 156 ~~~~~~~t~~~~~~l~-----------~~P~-----~ivIIGgG~ig~E~A~~~~~lG-------------~~Vtli~~~ 206 (466)
T Consensus 122 -~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~ 200 (405)
T COG1252 122 -YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG 200 (405)
T ss_pred -HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf -0777788999999999999999986335643441189998988238999999999999876533478653189998257
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEE-E
Q ss_conf 111221222211222222222222232200234420146872169997213321100000232045312103678400-0
Q gi|254781053|r 207 GTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEE-I 285 (466)
Q Consensus 207 ~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~ 285 (466)
T Consensus 201 p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~--~-~I~~~tvvWaaGv~a~~~---~~~l~ 270 (405)
T COG1252 201 PRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGE--E-EIPADTVVWAAGVRASPL---LKDLS 270 (405)
T ss_pred CHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEECCCC--E-EEECCEEEECCCCCCCHH---HHHCC
T ss_conf 121358888999999999998797898698148976991----7975588--3-776277998577757866---66327
Q ss_pred ECCCCCCCCCCCCCCCEE-ECCCCEEECCCCC------CCCCCCEECCCCCCEEECCCC
Q ss_conf 012676422333776333-0268487024333------543443000123201201112
Q gi|254781053|r 286 GINIDHRGCIEIGGQFQT-SISTIYAIGDVVR------GPMLAHKAEDEGIAVAEIISG 337 (466)
Q Consensus 286 gi~~~~~G~I~vd~~~~T-s~p~IyA~GDv~g------~~~l~~~A~~~g~~aa~~i~~ 337 (466)
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred HHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 02213489777578751699898699711103768887998118899999999999999