HHsearch alignment for GI: 254781053 and conserved domain: PRK05192

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=98.85  E-value=4.1e-08  Score=77.54  Aligned_cols=135  Identities=26%  Similarity=0.462  Sum_probs=69.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCH-----H-HHHHHHHHHH-HHHHHHHHCCEE
Q ss_conf             93319999898668999999998799399993799-71502513667370-----9-8999999999-999866755816
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPS-----K-ALLHASEMYS-HIAKEAGDLGIN   72 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPs-----K-~l~~~a~~~~-~~~~~~~~~g~~   72 (466)
T Consensus         5 ~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig-~---msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq   80 (621)
T PRK05192          5 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG-Q---MSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQ   80 (621)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE-E---EECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             879889989757999999999967996799965813115-8---604520367216576668775368999999887616


Q ss_pred             C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf             4------77532899999999999998777778764-0043101100111-0-0222102-3575211232210000467
Q gi|254781053|r   73 I------ASCHLDLKKMMSYKKSIVESNTQGINFLL-KKNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIAT  142 (466)
Q Consensus        73 ~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviAT  142 (466)
T Consensus        81 ~r~LN~sKGpAv~~~RaQ~Dr~~Y----~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g-~~i~a~~vvltt  155 (621)
T PRK05192         81 FRMLNTSKGPAVRAPRAQADRKLY----RAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDG-LEFRAKAVVLTT  155 (621)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCC-EEEEEEEEEEEC
T ss_conf             876158888300673988859999----999999996499978998145799987999999996687-099852699831


Q ss_pred             CC
Q ss_conf             66
Q gi|254781053|r  143 GS  144 (466)
Q Consensus       143 Gs  144 (466)
T Consensus       156 GT  157 (621)
T PRK05192        156 GT  157 (621)
T ss_pred             CC
T ss_conf             56