HHsearch alignment for GI: 254781053 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=99.96 E-value=7.1e-30 Score=235.99 Aligned_cols=273 Identities=23% Similarity=0.320 Sum_probs=182.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466)
Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466)
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~-GIP~--------------------------yRLP~-~v 189 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRY-GIPG--------------------------YRLPR-DV 189 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EEC-CCCC--------------------------CCCCH-HH
T ss_conf 8999897789999999999769858996767888988-835-6875--------------------------44758-99
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466)
Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466)
T Consensus 190 -------l~~e---i~-~i~~~GV~~~~n~~-vg~d--it~~~----L~~~yDAV~la~Ga~~~r~l~i~G~d~----~g 247 (560)
T PRK12771 190 -------LDAE---IQ-RILDLGVEVKLGVR-VGED--ITLEQ----LEGDYDAVFVAIGAQLGKRLPIPGEDA----AN 247 (560)
T ss_pred -------HHHH---HH-HHHHCCCEEEECCE-ECCC--CCHHH----HHCCCCEEEECCCCCCCCCCCCCCCCC----CC
T ss_conf -------9999---99-99964967983878-4465--67999----717788899916878776089788776----55
Q ss_pred EEEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 453057411------11113332101234454332013220122-01110000111-22122221122222222222223
Q gi|254781053|r 161 IVSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHCLKIMSKQGMNF 232 (466)
Q Consensus 161 ~~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~~~~l~~~gV~i 232 (466)
T Consensus 248 V~~al~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~E----i~-~A~eEGV~~ 322 (560)
T PRK12771 248 VLDAVSFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFE----ID-DALREGVEI 322 (560)
T ss_pred CEEHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH----HH-HHHHCCCEE
T ss_conf 2405999999756897556886899899822899999999738976999831442028999899----98-787479568
Q ss_pred CCCHHHHHHHCCCCCCE-EEEEE----------ECCCCCCCEEEEEEECCCCEEEECCCCCEE-EECCCCCCCCCCCC-C
Q ss_conf 22002344201468721-69997----------213321100000232045312103678400-00126764223337-7
Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQ-VVYRS----------TDDEPINIEADAVLVAAGRRPYTKGLGLEE-IGINIDHRGCIEIG-G 299 (466)
Q Consensus 233 ~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~gi~~~~~G~I~vd-~ 299 (466)
T Consensus 323 ~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~ 399 (560)
T PRK12771 323 NWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRN 399 (560)
T ss_pred EECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCC
T ss_conf 96346479980698598999999998899887889972675468999922578873000--236554717-998884787
Q ss_pred CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf 633302684870243335434430001232012011
Q gi|254781053|r 300 QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466)
Q Consensus 300 ~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466)
T Consensus 400 ~~~Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~I 435 (560)
T PRK12771 400 FRMTGRPGVFAGGDMVPGERTVTTAVGHGKKAARHI 435 (560)
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 665799886743654668418999999999999999