HHsearch alignment for GI: 254781053 and conserved domain: TIGR00031
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=92.86 E-value=0.021 Score=35.93 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCCCCEEE
Q ss_conf 3220122011100001112212222112222222222-----2223220023442014-687216999721332110000
Q gi|254781053|r 192 VWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-----GMNFQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEAD 265 (466)
Q Consensus 192 ~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-----gV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~i~~D 265 (466)
T Consensus 123 ~~~k~~~~vpl~~L~~~----~~p~i~~-l~~~l~~~v~~~Yt~K-~WGl~~~~~~~~v~~Rvpv~Ls~d----~~YF~d 192 (390)
T TIGR00031 123 RFKKFGAHVPLLELQEI----ADPDIQL-LYQFLYRKVYKPYTVK-QWGLPLEEIDPEVIGRVPVVLSED----SSYFPD 192 (390)
T ss_pred HHHHHCCCCCHHHHHHC----CCCCHHH-HHHHHHHHHHCCCCCC-CCCCCHHHCCHHHHCCEEEEEECC----CCCCCC
T ss_conf 32320461556888411----6853788-9999999862477733-367885776801616353895036----886665
Q ss_pred EEEECCCCEEEECCCC--CEE--EECCCC
Q ss_conf 0232045312103678--400--001267
Q gi|254781053|r 266 AVLVAAGRRPYTKGLG--LEE--IGINID 290 (466)
Q Consensus 266 ~vl~a~G~~Pn~~~l~--Le~--~gi~~~ 290 (466)
T Consensus 193 r~yQg~P~~GYT~~~~kML~~Plidl~Ln 221 (390)
T TIGR00031 193 RIYQGLPKGGYTKLFEKMLDHPLIDLKLN 221 (390)
T ss_pred CEEECCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 24622367535799899740984676308