HHsearch alignment for GI: 254781053 and conserved domain: TIGR01318

>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.09  E-value=4.2e-07  Score=70.21  Aligned_cols=90  Identities=27%  Similarity=0.432  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             113332101234454332013220122011100001112-------212--22211222222222222232200234420
Q gi|254781053|r  172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NGM--DKEIAAHCLKIMSKQGMNFQLNSKVSSVK  242 (466)
Q Consensus       172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~i~  242 (466)
T Consensus       141 ~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGr--  218 (480)
T TIGR01318       141 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGR--  218 (480)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEC--
T ss_conf             078278997788602579998751785599974770307601368885110278999999999758927865816503--


Q ss_pred             CCCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             14687216999721332110000023204531
Q gi|254781053|r  243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       243 ~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
T Consensus       219 --D----~~l~-----~LLe~YDAVFlGvGTY  239 (480)
T TIGR01318       219 --D----ISLD-----DLLEDYDAVFLGVGTY  239 (480)
T ss_pred             --C----CCHH-----HHHHHCCEEEEECCCC
T ss_conf             --2----5554-----4431148489611433