HHsearch alignment for GI: 254781053 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00  E-value=0  Score=1036.50  Aligned_cols=464  Identities=48%  Similarity=0.788  Sum_probs=448.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC-CCCCH
Q ss_conf             33199998986689999999987993999937997150251366737098999999999999866755816477-53289
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIAS-CHLDL   80 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~-~~~d~   80 (466)
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK-~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~   79 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDW   79 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEE-CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECH
T ss_conf             95189987787727999999864980899980-35687487277675478877667899999889867803367126758


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf             99999999999987777787640043101100111002221023575211--2322100004676652444576-65321
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE--ETIEAKNIVIATGSEASGLPGM-SIDFD  157 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~--~~i~ad~iviATGs~p~~iP~~-~~~~~  157 (466)
T Consensus        80 ~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~  159 (481)
T TIGR01350        80 EKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDED  159 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999988987542467898863068059999999985858998356553114787403799338603435777865767


Q ss_pred             CE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             00--2453057411111133321012344543320132201220111000011122122221122222222222-22322
Q gi|254781053|r  158 EQ--VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG-MNFQL  234 (466)
Q Consensus       158 ~~--~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~g-V~i~~  234 (466)
T Consensus       160 ~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~  239 (481)
T TIGR01350       160 GKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILT  239 (481)
T ss_pred             CCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             78878983268743224885669987866778899999853980899945750035431689999999997449849854


Q ss_pred             CHHHH--HHHCCCCCCEEEEEEECC-CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE
Q ss_conf             00234--420146872169997213-321100000232045312103678400001267642233377633302684870
Q gi|254781053|r  235 NSKVS--SVKKVKGKAQVVYRSTDD-EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI  311 (466)
Q Consensus       235 ~~~v~--~i~~~~~~~~v~~~~~~g-~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~  311 (466)
T Consensus       240 ~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAI  319 (481)
T TIGR01350       240 NAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAI  319 (481)
T ss_pred             CCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEE
T ss_conf             85442335775287899999987998058898739999842434767646021211887898188798325168966688


Q ss_pred             CCCCCCCCCCCEECCCCCCEEECCCCCCC------CCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             24333543443000123201201112222------222333322100014455100147888623466589999604470
Q gi|254781053|r  312 GDVVRGPMLAHKAEDEGIAVAEIISGQKG------HVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANG  385 (466)
Q Consensus       312 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~------~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~  385 (466)
T Consensus       320 GDv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnG  399 (481)
T TIGR01350       320 GDVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANG  399 (481)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCC
T ss_conf             73478702689999878999999818761100001255357887784687366303887999855985899970101042


Q ss_pred             HHHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             3441889-833899999789986999999829988999999999987898789963784377889999999998608977
Q gi|254781053|r  386 RARSMNS-IDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPI  464 (466)
Q Consensus       386 ra~~~~~-~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~  464 (466)
T Consensus       400 kA~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a~g~~i  479 (481)
T TIGR01350       400 KALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAALGKPI  479 (481)
T ss_pred             HHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             12000567876189999647781888998842443268899998774898899998527898888999999999818856


Q ss_pred             CC
Q ss_conf             49
Q gi|254781053|r  465 HM  466 (466)
Q Consensus       465 ~~  466 (466)
T Consensus       480 H~  481 (481)
T TIGR01350       480 HM  481 (481)
T ss_pred             CC
T ss_conf             79