HHsearch alignment for GI: 254781053 and conserved domain: TIGR01372

>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.73  E-value=1.2e-17  Score=146.89  Aligned_cols=284  Identities=20%  Similarity=0.239  Sum_probs=173.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
T Consensus       177 CDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~IDG~P  227 (1026)
T TIGR01372       177 CDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETIDGKP  227 (1026)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCCCCCC
T ss_conf             04788788967999999996479889997067657775-----------5677------------------876017801


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEECCCCCCC-----------CC-CCCCCC--CCCCEEECCCCCCC
Q ss_conf             9999999999877777876400431011001---1100222102-----------35-752112--32210000467665
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS---ARIVSNNKIL-----------VK-GSSSEE--TIEAKNIVIATGSE  145 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~---a~~~~~~~v~-----------V~-~~~~~~--~i~ad~iviATGs~  145 (466)
T Consensus       228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~Y-D~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~  299 (1026)
T TIGR01372       228 AADWAAATVAELEALP-------EVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGAL  299 (1026)
T ss_pred             HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEE-CCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCC
T ss_conf             8999999999974189-------81674354055451-477478762011366778874853305777253456605764


Q ss_pred             --C-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCC
Q ss_conf             --2-----44457665321002453057411111133321012344543320132201220-111000011122122221
Q gi|254781053|r  146 --A-----SGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEI  217 (466)
Q Consensus       146 --p-----~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~  217 (466)
T Consensus       300 ERPlVF~nND~PGvMlA~A~~~YlnRyg----V~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p------  369 (1026)
T TIGR01372       300 ERPLVFANNDRPGVMLAGAARTYLNRYG----VAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP------  369 (1026)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH------
T ss_conf             4778688319532333679999888750----054870589821735899999999648950699961788752------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEE-------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf             1222222222222232200234420146-872169997-------21332110000023204531210367840000126
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRS-------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI  289 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~-------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~  289 (466)
T Consensus       370 --~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W  447 (1026)
T TIGR01372       370 --ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAW  447 (1026)
T ss_pred             --HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCC
T ss_conf             --479999875985986450221257721010468886244001135785247853898727766212220005883430


Q ss_pred             CCC--CCCCCCCCCEEECCCCEEECCCCCCCCCCC---EECCCCCCEEECC
Q ss_conf             764--223337763330268487024333543443---0001232012011
Q gi|254781053|r  290 DHR--GCIEIGGQFQTSISTIYAIGDVVRGPMLAH---KAEDEGIAVAEII  335 (466)
Q Consensus       290 ~~~--G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~---~A~~~g~~aa~~i  335 (466)
T Consensus       448 ~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~  498 (1026)
T TIGR01372       448 DEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA  498 (1026)
T ss_pred             CHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             133431586675544366772785300010107999999999999999861