HHsearch alignment for GI: 254781053 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.73 E-value=1.2e-17 Score=146.89 Aligned_cols=284 Identities=20% Similarity=0.239 Sum_probs=173.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466)
T Consensus 177 CDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~IDG~P 227 (1026)
T TIGR01372 177 CDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETIDGKP 227 (1026)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCCCCCC
T ss_conf 04788788967999999996479889997067657775-----------5677------------------876017801
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEECCCCCCC-----------CC-CCCCCC--CCCCEEECCCCCCC
Q ss_conf 9999999999877777876400431011001---1100222102-----------35-752112--32210000467665
Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS---ARIVSNNKIL-----------VK-GSSSEE--TIEAKNIVIATGSE 145 (466)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~---a~~~~~~~v~-----------V~-~~~~~~--~i~ad~iviATGs~ 145 (466)
T Consensus 228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~Y-D~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ 299 (1026)
T TIGR01372 228 AADWAAATVAELEALP-------EVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGAL 299 (1026)
T ss_pred HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEE-CCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCC
T ss_conf 8999999999974189-------81674354055451-477478762011366778874853305777253456605764
Q ss_pred --C-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCC
Q ss_conf --2-----44457665321002453057411111133321012344543320132201220-111000011122122221
Q gi|254781053|r 146 --A-----SGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEI 217 (466)
Q Consensus 146 --p-----~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~ 217 (466)
T Consensus 300 ERPlVF~nND~PGvMlA~A~~~YlnRyg----V~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p------ 369 (1026)
T TIGR01372 300 ERPLVFANNDRPGVMLAGAARTYLNRYG----VAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP------ 369 (1026)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH------
T ss_conf 4778688319532333679999888750----054870589821735899999999648950699961788752------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEE-------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf 1222222222222232200234420146-872169997-------21332110000023204531210367840000126
Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRS-------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI 289 (466)
Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~-------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~ 289 (466)
T Consensus 370 --~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W 447 (1026)
T TIGR01372 370 --ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAW 447 (1026)
T ss_pred --HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCC
T ss_conf --479999875985986450221257721010468886244001135785247853898727766212220005883430
Q ss_pred CCC--CCCCCCCCCEEECCCCEEECCCCCCCCCCC---EECCCCCCEEECC
Q ss_conf 764--223337763330268487024333543443---0001232012011
Q gi|254781053|r 290 DHR--GCIEIGGQFQTSISTIYAIGDVVRGPMLAH---KAEDEGIAVAEII 335 (466)
Q Consensus 290 ~~~--G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~---~A~~~g~~aa~~i 335 (466)
T Consensus 448 ~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~ 498 (1026)
T TIGR01372 448 DEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA 498 (1026)
T ss_pred CHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 133431586675544366772785300010107999999999999999861