HHsearch alignment for GI: 254781053 and conserved domain: TIGR03140

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00  E-value=6.5e-39  Score=301.77  Aligned_cols=286  Identities=26%  Similarity=0.346  Sum_probs=197.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
T Consensus       213 YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~--~GGqv~~t~~I----------------e--NypG~----~~i~G~e  268 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGI----------------E--NLISV----PYTTGSQ  268 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCEECCCE----------------E--ECCCC----CCCCHHH
T ss_conf             88899896789999999999779976999248--77531303460----------------0--44898----7775799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCC-CC
Q ss_conf             9999999999877777876400431011001-1100--22210235752112322100004676652444--57665-32
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PGMSI-DF  156 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~~~~-~~  156 (466)
T Consensus       269 L~~~~~-----------~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~aktVIiATGa~~r~l~vpGE~e~~G  336 (515)
T TIGR03140       269 LAANLE-----------EHIKQYPIDLMENQRAKKIETEDGLIVVTLESG-EVLKAKSVIVATGARWRKLGVPGEKEYIG  336 (515)
T ss_pred             HHHHHH-----------HHHHHCCCEEEECCEEEEEECCCCCEEEEECCC-CEEEECEEEECCCCCCCCCCCCCHHHCCC
T ss_conf             999999-----------999974968991336999972798189998799-89993979995698735589996787038


Q ss_pred             CCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             100245-30574111111333210123445433201322012201110000111221222211222222222-2222322
Q gi|254781053|r  157 DEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQL  234 (466)
Q Consensus       157 ~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~  234 (466)
T Consensus       337 kGVsYCa~CDG~~-fk--gK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~  407 (515)
T TIGR03140       337 KGVAYCPHCDGPF-FK--GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILT  407 (515)
T ss_pred             CCCCEECCCCCHH-CC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEE
T ss_conf             7401001078101-18--97699989977999999999841771699736523343--38----8999998389868997


Q ss_pred             CHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf             00234420146872-1699972-133211000002320453121036784000012676422333776333026848702
Q gi|254781053|r  235 NSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG  312 (466)
Q Consensus       235 ~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G  312 (466)
T Consensus       408 ~~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~~-v~l~~~G~I~vD~~~~TnvpGVFAAG  484 (515)
T TIGR03140       408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAG  484 (515)
T ss_pred             CCEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HCH-HCCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf             988899987898589999998899977999868999984997662565--151-11079973982998707999879856


Q ss_pred             CCCCCCC-CCCEECCCCCCEEECCC
Q ss_conf             4333543-44300012320120111
Q gi|254781053|r  313 DVVRGPM-LAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       313 Dv~g~~~-l~~~A~~~g~~aa~~i~  336 (466)
T Consensus       485 Dvt~~~~kQi~~A~G~Ga~AAlsA~  509 (515)
T TIGR03140       485 DVTTVPYKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             ECCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf             6738986678786664799999999