HHsearch alignment for GI: 254781053 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=6.5e-39 Score=301.77 Aligned_cols=286 Identities=26% Similarity=0.346 Sum_probs=197.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466)
Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466)
T Consensus 213 YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~--~GGqv~~t~~I----------------e--NypG~----~~i~G~e 268 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGI----------------E--NLISV----PYTTGSQ 268 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCEECCCE----------------E--ECCCC----CCCCHHH
T ss_conf 88899896789999999999779976999248--77531303460----------------0--44898----7775799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCC-CC
Q ss_conf 9999999999877777876400431011001-1100--22210235752112322100004676652444--57665-32
Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PGMSI-DF 156 (466)
Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~~~~-~~ 156 (466)
T Consensus 269 L~~~~~-----------~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~aktVIiATGa~~r~l~vpGE~e~~G 336 (515)
T TIGR03140 269 LAANLE-----------EHIKQYPIDLMENQRAKKIETEDGLIVVTLESG-EVLKAKSVIVATGARWRKLGVPGEKEYIG 336 (515)
T ss_pred HHHHHH-----------HHHHHCCCEEEECCEEEEEECCCCCEEEEECCC-CEEEECEEEECCCCCCCCCCCCCHHHCCC
T ss_conf 999999-----------999974968991336999972798189998799-89993979995698735589996787038
Q ss_pred CCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 100245-30574111111333210123445433201322012201110000111221222211222222222-2222322
Q gi|254781053|r 157 DEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQL 234 (466)
Q Consensus 157 ~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~ 234 (466)
T Consensus 337 kGVsYCa~CDG~~-fk--gK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~ 407 (515)
T TIGR03140 337 KGVAYCPHCDGPF-FK--GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILT 407 (515)
T ss_pred CCCCEECCCCCHH-CC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEE
T ss_conf 7401001078101-18--97699989977999999999841771699736523343--38----8999998389868997
Q ss_pred CHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf 00234420146872-1699972-133211000002320453121036784000012676422333776333026848702
Q gi|254781053|r 235 NSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG 312 (466)
Q Consensus 235 ~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G 312 (466)
T Consensus 408 ~~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~~-v~l~~~G~I~vD~~~~TnvpGVFAAG 484 (515)
T TIGR03140 408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAG 484 (515)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HCH-HCCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf 988899987898589999998899977999868999984997662565--151-11079973982998707999879856
Q ss_pred CCCCCCC-CCCEECCCCCCEEECCC
Q ss_conf 4333543-44300012320120111
Q gi|254781053|r 313 DVVRGPM-LAHKAEDEGIAVAEIIS 336 (466)
Q Consensus 313 Dv~g~~~-l~~~A~~~g~~aa~~i~ 336 (466)
T Consensus 485 Dvt~~~~kQi~~A~G~Ga~AAlsA~ 509 (515)
T TIGR03140 485 DVTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred ECCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 6738986678786664799999999