HHsearch alignment for GI: 254781053 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.31 E-value=2.9e-05 Score=56.77 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC--CCCC--------CCC----CCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 333210123445433201322012201110000--1112--------212----22211222222222222232200234
Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS--GTIL--------NGM----DKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466)
Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466)
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699
Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf 42014687216999721332110000023204531210
Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466)
Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466)
T Consensus 292 ~i~~~~~~~~v~~~--~g--~~~~aktVIiATGa~~r~ 325 (515)
T TIGR03140 292 KIETEDGLIVVTLE--SG--EVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEECCCCCEEEEEC--CC--CEEEECEEEECCCCCCCC
T ss_conf 99727981899987--99--899939799956987355