Query gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 466 No_of_seqs 215 out of 11761 Neff 7.6 Searched_HMMs 39220 Date Mon May 30 04:31:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781053.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01350 lipoamide_DH dihydro 100.0 0 0 1036.5 27.8 464 2-466 1-481 (481) 2 PRK06115 dihydrolipoamide dehy 100.0 0 0 870.8 30.4 462 1-466 1-466 (466) 3 PRK06416 dihydrolipoamide dehy 100.0 0 0 868.4 30.8 460 1-466 3-462 (462) 4 PRK13748 putative mercuric red 100.0 0 0 866.0 27.8 452 3-464 99-553 (561) 5 PRK06467 dihydrolipoamide dehy 100.0 0 0 857.2 31.6 462 1-466 1-465 (472) 6 TIGR02053 MerA mercuric reduct 100.0 0 0 861.6 26.4 462 3-466 1-488 (494) 7 PRK06327 dihydrolipoamide dehy 100.0 0 0 849.5 32.4 462 2-466 4-475 (475) 8 PRK07818 dihydrolipoamide dehy 100.0 0 0 849.4 31.0 461 1-466 1-467 (467) 9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 0 0 850.1 28.9 451 1-456 3-454 (454) 10 PRK05976 dihydrolipoamide dehy 100.0 0 0 845.7 30.4 457 3-466 5-464 (464) 11 PRK05249 soluble pyridine nucl 100.0 0 0 845.9 28.0 456 1-463 4-464 (465) 12 PRK06912 acoL dihydrolipoamide 100.0 0 0 837.8 29.4 455 4-466 2-458 (458) 13 PRK06292 dihydrolipoamide dehy 100.0 0 0 833.2 29.8 457 1-466 1-460 (460) 14 PRK07845 flavoprotein disulfid 100.0 0 0 833.0 29.2 454 2-463 1-464 (467) 15 PRK06370 mercuric reductase; V 100.0 0 0 823.7 30.1 450 2-460 4-456 (459) 16 PTZ00153 lipoamide dehydrogena 100.0 0 0 823.7 26.6 456 3-463 124-671 (673) 17 PRK07846 mycothione/glutathion 100.0 0 0 810.0 27.4 447 2-459 1-451 (453) 18 PRK08010 pyridine nucleotide-d 100.0 0 0 810.8 25.9 433 1-459 1-440 (441) 19 PRK06116 glutathione reductase 100.0 0 0 803.2 28.8 439 3-454 5-448 (450) 20 TIGR03452 mycothione_red mycot 100.0 0 0 805.8 26.7 444 2-459 2-452 (452) 21 PTZ00052 thioredoxin reductase 100.0 0 0 805.0 25.9 445 3-454 42-518 (541) 22 PRK07251 pyridine nucleotide-d 100.0 0 0 788.0 27.6 431 1-455 2-435 (438) 23 KOG1335 consensus 100.0 0 0 769.9 29.5 462 3-466 40-506 (506) 24 TIGR01424 gluta_reduc_2 glutat 100.0 0 0 759.7 21.9 444 2-453 2-475 (478) 25 TIGR01421 gluta_reduc_1 glutat 100.0 0 0 757.7 17.0 450 2-453 2-472 (475) 26 TIGR01438 TGR thioredoxin and 100.0 0 0 674.2 21.6 448 2-453 2-493 (513) 27 KOG0405 consensus 100.0 0 0 652.9 20.4 444 2-453 20-469 (478) 28 KOG4716 consensus 100.0 0 0 580.1 21.2 447 2-453 19-485 (503) 29 PRK09564 coenzyme A disulfide 100.0 0 0 538.5 16.6 404 1-454 1-434 (443) 30 PRK13512 coenzyme A disulfide 100.0 0 0 503.4 14.3 399 1-452 1-427 (438) 31 TIGR03385 CoA_CoA_reduc CoA-di 100.0 0 0 503.9 13.2 392 16-452 1-420 (427) 32 TIGR01423 trypano_reduc trypan 100.0 0 0 486.3 17.6 441 3-452 4-467 (486) 33 PRK04965 nitric oxide reductas 100.0 0 0 356.2 9.3 356 1-424 1-371 (378) 34 PRK09754 phenylpropionate diox 100.0 5.6E-45 0 345.9 11.6 365 1-436 1-386 (400) 35 TIGR01292 TRX_reduct thioredox 100.0 1.9E-42 0 327.6 9.4 291 3-335 1-317 (321) 36 TIGR03143 AhpF_homolog putativ 100.0 2.9E-42 0 326.1 10.2 283 1-334 1-303 (555) 37 PRK12770 putative glutamate sy 100.0 7.3E-42 0 323.2 8.3 291 3-336 18-344 (350) 38 pfam07992 Pyr_redox_2 Pyridine 100.0 4.5E-40 1.1E-44 310.2 7.7 273 4-319 1-277 (277) 39 TIGR03140 AhpF alkyl hydropero 100.0 6.5E-39 1.7E-43 301.8 10.6 286 3-336 213-509 (515) 40 PRK10262 thioredoxin reductase 100.0 5.8E-37 1.5E-41 287.6 7.9 290 2-336 6-311 (321) 41 TIGR02374 nitri_red_nirB nitri 100.0 5E-37 1.3E-41 288.0 4.6 362 5-429 1-394 (813) 42 COG0492 TrxB Thioredoxin reduc 100.0 2.7E-35 6.9E-40 275.4 10.3 285 1-335 2-296 (305) 43 COG1252 Ndh NADH dehydrogenase 100.0 7E-35 1.8E-39 272.4 4.0 282 3-337 4-329 (405) 44 PRK11749 putative oxidoreducta 100.0 1.3E-33 3.4E-38 263.1 8.4 276 4-336 142-451 (460) 45 TIGR03169 Nterm_to_SelD pyridi 100.0 6.3E-34 1.6E-38 265.5 3.8 278 5-337 2-308 (364) 46 TIGR01316 gltA glutamate synth 100.0 6.2E-33 1.6E-37 258.3 8.5 279 3-336 143-459 (462) 47 PRK12831 putative oxidoreducta 100.0 1.7E-32 4.3E-37 255.1 10.2 278 5-336 143-457 (464) 48 PRK09853 putative selenate red 100.0 7.4E-33 1.9E-37 257.7 8.3 278 4-339 552-852 (1032) 49 PRK12769 putative oxidoreducta 100.0 6.8E-32 1.7E-36 250.7 10.6 276 4-336 329-648 (654) 50 TIGR03315 Se_ygfK putative sel 100.0 2E-32 5.1E-37 254.5 7.6 275 4-338 539-838 (1012) 51 PRK12814 putative NADPH-depend 100.0 4.8E-32 1.2E-36 251.8 9.4 273 5-335 196-496 (652) 52 PRK12810 gltD glutamate syntha 100.0 2.8E-32 7.1E-37 253.5 8.2 279 4-336 145-463 (472) 53 PRK12809 putative oxidoreducta 100.0 4.2E-31 1.1E-35 244.9 10.8 277 4-337 312-632 (639) 54 PRK12778 putative bifunctional 100.0 3.6E-31 9.1E-36 245.4 8.8 274 4-336 441-754 (760) 55 COG1251 NirB NAD(P)H-nitrite r 100.0 1.4E-31 3.6E-36 248.3 6.4 372 3-440 4-392 (793) 56 TIGR01317 GOGAT_sm_gam glutama 100.0 5E-30 1.3E-34 237.1 10.4 289 4-335 153-505 (517) 57 PTZ00318 NADH dehydrogenase; P 100.0 5E-31 1.3E-35 244.4 4.8 304 3-363 11-378 (514) 58 PRK12771 putative glutamate sy 100.0 7.1E-30 1.8E-34 236.0 8.5 273 4-335 139-435 (560) 59 PRK13984 putative oxidoreducta 100.0 6.3E-30 1.6E-34 236.4 7.7 275 4-336 285-598 (604) 60 COG0446 HcaD Uncharacterized N 100.0 6.7E-30 1.7E-34 236.2 7.6 386 5-444 1-412 (415) 61 KOG1336 consensus 100.0 9E-30 2.3E-34 235.2 4.9 363 5-439 77-463 (478) 62 PRK12779 putative bifunctional 100.0 6.5E-28 1.7E-32 221.7 12.2 278 4-338 308-625 (944) 63 PRK12775 putative trifunctiona 100.0 1.5E-28 3.8E-33 226.4 7.8 274 4-336 434-749 (993) 64 pfam02852 Pyr_redox_dim Pyridi 99.9 2.8E-27 7.3E-32 217.0 10.9 110 347-456 1-110 (110) 65 TIGR01318 gltD_gamma_fam gluta 99.9 2.9E-27 7.3E-32 217.0 9.1 279 5-336 146-475 (480) 66 COG3634 AhpF Alkyl hydroperoxi 99.9 4.7E-26 1.2E-30 208.2 6.7 289 3-333 212-508 (520) 67 KOG2495 consensus 99.9 6E-26 1.5E-30 207.4 1.9 285 4-336 57-393 (491) 68 KOG0404 consensus 99.9 3.6E-24 9.2E-29 194.4 3.8 281 4-330 10-309 (322) 69 KOG1346 consensus 99.9 2.2E-22 5.6E-27 181.4 6.5 404 5-439 181-649 (659) 70 COG0493 GltD NADPH-dependent g 99.9 1.9E-22 4.9E-27 181.9 5.8 282 4-336 125-447 (457) 71 KOG0399 consensus 99.9 3.2E-21 8.3E-26 172.9 10.6 284 3-335 1786-2115(2142) 72 TIGR01372 soxA sarcosine oxida 99.7 1.2E-17 3.1E-22 146.9 8.8 284 3-335 177-498 (1026) 73 pfam00743 FMO-like Flavin-bind 99.7 1.2E-17 3E-22 147.1 8.1 311 5-338 4-395 (532) 74 KOG2755 consensus 99.7 9.9E-18 2.5E-22 147.6 6.5 262 5-316 2-321 (334) 75 COG1148 HdrA Heterodisulfide r 99.6 1.8E-16 4.6E-21 138.4 5.4 321 4-332 126-537 (622) 76 COG2072 TrkA Predicted flavopr 99.6 6.7E-16 1.7E-20 134.2 5.8 195 2-209 8-210 (443) 77 COG3486 IucD Lysine/ornithine 99.5 3E-13 7.8E-18 114.9 9.1 321 3-335 6-411 (436) 78 PRK05329 anaerobic glycerol-3- 99.5 1.1E-13 2.7E-18 118.2 6.6 118 217-336 264-418 (425) 79 KOG1399 consensus 99.5 2E-12 5.1E-17 109.0 12.2 303 1-338 5-332 (448) 80 PRK08641 sdhA succinate dehydr 99.4 2.1E-12 5.4E-17 108.8 11.6 39 1-39 1-40 (589) 81 pfam00070 Pyr_redox Pyridine n 99.4 8E-15 2E-19 126.4 -1.8 81 176-256 1-81 (82) 82 PRK08071 L-aspartate oxidase; 99.4 3.7E-12 9.5E-17 107.0 9.2 38 3-41 4-41 (510) 83 TIGR03378 glycerol3P_GlpB glyc 99.4 8.7E-13 2.2E-17 111.6 5.6 101 217-319 265-396 (419) 84 PRK08275 putative oxidoreducta 99.4 1.3E-11 3.2E-16 103.1 11.4 36 1-36 8-45 (554) 85 PRK07804 L-aspartate oxidase; 99.4 1.4E-11 3.5E-16 102.9 11.2 39 3-41 16-54 (533) 86 PRK08958 sdhA succinate dehydr 99.3 7.7E-12 2E-16 104.7 9.6 38 3-40 8-45 (588) 87 KOG3851 consensus 99.3 3.5E-13 8.9E-18 114.5 2.0 299 2-346 39-371 (446) 88 PRK08401 L-aspartate oxidase; 99.3 3.1E-12 7.9E-17 107.6 6.6 39 2-40 1-39 (464) 89 PRK06263 sdhA succinate dehydr 99.3 1.4E-11 3.5E-16 102.9 9.9 34 1-35 6-39 (539) 90 PRK05945 sdhA succinate dehydr 99.3 1.8E-11 4.5E-16 102.1 9.9 41 1-41 2-44 (575) 91 PRK09077 L-aspartate oxidase; 99.3 1.8E-11 4.7E-16 101.9 9.7 45 2-47 8-53 (535) 92 PRK07395 L-aspartate oxidase; 99.3 1.3E-11 3.4E-16 103.0 8.8 39 2-41 10-48 (556) 93 COG2081 Predicted flavoprotein 99.3 1.4E-12 3.5E-17 110.1 3.8 137 1-145 2-166 (408) 94 PRK06452 sdhA succinate dehydr 99.3 2E-11 5.1E-16 101.7 9.7 38 1-38 4-41 (566) 95 PRK06175 L-aspartate oxidase; 99.3 2E-11 5E-16 101.7 9.5 39 1-40 1-41 (433) 96 PRK06069 sdhA succinate dehydr 99.3 2.7E-11 6.9E-16 100.7 10.1 41 1-41 4-47 (582) 97 PRK07803 sdhA succinate dehydr 99.3 2.1E-11 5.3E-16 101.5 8.6 38 2-39 8-45 (631) 98 PRK12844 3-ketosteroid-delta-1 99.3 8.9E-12 2.3E-16 104.2 6.6 41 3-43 7-47 (552) 99 PTZ00139 succinate dehydrogena 99.3 1.1E-11 2.7E-16 103.6 7.0 40 2-41 34-73 (622) 100 PRK09078 sdhA succinate dehydr 99.3 5.8E-11 1.5E-15 98.3 10.6 38 2-39 12-49 (598) 101 PRK07512 L-aspartate oxidase; 99.3 4.7E-11 1.2E-15 98.9 10.2 33 2-36 9-41 (507) 102 PRK09231 fumarate reductase fl 99.3 1.5E-11 3.9E-16 102.5 6.9 41 1-41 3-45 (582) 103 pfam03486 HI0933_like HI0933-l 99.3 2.2E-10 5.6E-15 94.1 12.7 136 3-146 1-164 (405) 104 PRK08626 fumarate reductase fl 99.2 1.1E-10 2.7E-15 96.4 10.7 37 3-39 6-42 (657) 105 PRK07057 sdhA succinate dehydr 99.2 2.9E-11 7.5E-16 100.4 7.5 39 1-39 11-49 (591) 106 PRK06134 putative FAD-binding 99.2 5.2E-11 1.3E-15 98.7 8.2 42 2-43 10-51 (579) 107 PRK13800 putative oxidoreducta 99.2 3.5E-10 9E-15 92.6 11.9 35 1-35 12-46 (894) 108 PRK12842 putative succinate de 99.2 7.1E-11 1.8E-15 97.7 8.1 43 1-43 4-46 (567) 109 PTZ00188 adrenodoxin reductase 99.2 2.3E-10 5.9E-15 94.0 10.7 261 3-318 40-417 (506) 110 PRK12843 putative FAD-binding 99.2 1.6E-10 4.2E-15 95.0 9.3 41 3-43 15-55 (576) 111 KOG1800 consensus 99.2 1.3E-10 3.2E-15 95.9 8.3 276 4-336 22-403 (468) 112 PRK11259 solA N-methyltryptoph 99.2 2E-10 5E-15 94.4 8.7 36 1-36 2-37 (377) 113 PRK08205 sdhA succinate dehydr 99.2 3.7E-10 9.4E-15 92.5 9.8 37 2-39 5-41 (583) 114 PRK11728 hypothetical protein; 99.1 4.5E-11 1.2E-15 99.1 4.8 196 1-275 1-205 (400) 115 COG4529 Uncharacterized protei 99.1 1.5E-09 3.8E-14 88.0 11.5 203 2-207 1-231 (474) 116 COG0644 FixC Dehydrogenases (f 99.1 3.1E-10 7.9E-15 93.0 7.5 40 1-40 2-41 (396) 117 PRK06854 adenylylsulfate reduc 99.1 1.3E-09 3.4E-14 88.4 10.7 35 2-36 11-47 (610) 118 PRK06481 fumarate reductase fl 99.1 3.7E-10 9.3E-15 92.5 7.9 41 2-42 60-100 (506) 119 PRK07843 3-ketosteroid-delta-1 99.1 9.6E-10 2.5E-14 89.4 9.3 42 3-44 6-47 (560) 120 TIGR01317 GOGAT_sm_gam glutama 99.1 6.3E-11 1.6E-15 98.1 3.0 192 174-375 151-379 (517) 121 PRK12409 D-amino acid dehydrog 99.0 2.1E-09 5.2E-14 87.0 9.4 77 217-296 199-279 (410) 122 PRK12835 3-ketosteroid-delta-1 99.0 2.9E-09 7.3E-14 86.0 10.0 41 3-43 12-52 (584) 123 TIGR01813 flavo_cyto_c flavocy 99.0 3.4E-09 8.6E-14 85.5 9.1 37 4-40 1-38 (487) 124 PRK07121 hypothetical protein; 99.0 2E-09 5.1E-14 87.1 7.6 41 3-43 21-61 (491) 125 PRK12845 3-ketosteroid-delta-1 99.0 1.2E-09 3.1E-14 88.7 6.4 40 3-43 17-56 (566) 126 PRK12837 3-ketosteroid-delta-1 99.0 2.4E-09 6.1E-14 86.6 7.2 41 3-44 10-50 (515) 127 PRK10015 hypothetical protein; 98.9 2.6E-10 6.7E-15 93.5 1.4 140 2-146 5-164 (429) 128 pfam01134 GIDA Glucose inhibit 98.9 8.6E-09 2.2E-13 82.5 8.6 132 4-144 1-150 (391) 129 TIGR00551 nadB L-aspartate oxi 98.9 4.2E-09 1.1E-13 84.8 5.6 34 1-34 1-34 (546) 130 PRK00711 D-amino acid dehydrog 98.9 1.9E-08 4.9E-13 80.0 8.9 52 218-273 204-255 (416) 131 PRK05192 tRNA uridine 5-carbox 98.9 4.1E-08 1.1E-12 77.5 10.5 135 1-144 5-157 (621) 132 pfam00890 FAD_binding_2 FAD bi 98.8 5E-08 1.3E-12 76.9 10.8 40 4-43 1-40 (401) 133 PRK11445 putative oxidoreducta 98.8 1.5E-08 3.8E-13 80.8 7.9 48 2-52 1-53 (348) 134 COG0029 NadB Aspartate oxidase 98.8 9E-09 2.3E-13 82.3 5.9 32 4-36 9-40 (518) 135 TIGR03364 HpnW_proposed FAD de 98.8 2.8E-07 7.1E-12 71.5 13.3 35 3-37 1-35 (365) 136 COG0579 Predicted dehydrogenas 98.8 3.8E-09 9.8E-14 85.1 3.5 226 1-304 2-237 (429) 137 TIGR03329 Phn_aa_oxid putative 98.8 2.6E-07 6.6E-12 71.7 12.9 48 2-49 24-74 (460) 138 PRK06184 hypothetical protein; 98.8 8.9E-09 2.3E-13 82.4 4.9 139 2-146 6-171 (503) 139 PRK06183 mhpA 3-(3-hydroxyphen 98.8 1E-07 2.7E-12 74.6 10.0 34 3-36 13-46 (554) 140 COG3075 GlpB Anaerobic glycero 98.8 5.4E-08 1.4E-12 76.7 8.6 101 217-319 260-391 (421) 141 PRK08274 tricarballylate dehyd 98.8 4.7E-08 1.2E-12 77.2 8.2 40 3-42 5-46 (456) 142 pfam01266 DAO FAD dependent ox 98.7 3.8E-07 9.6E-12 70.5 12.5 52 217-273 149-200 (309) 143 PRK12839 hypothetical protein; 98.7 1.7E-08 4.3E-13 80.4 4.8 43 3-45 10-52 (574) 144 PRK10157 putative oxidoreducta 98.7 2.4E-08 6.1E-13 79.2 5.5 38 2-39 5-42 (428) 145 COG1233 Phytoene dehydrogenase 98.7 2.9E-08 7.3E-13 78.7 5.5 56 215-273 224-279 (487) 146 PRK08244 hypothetical protein; 98.7 5.1E-08 1.3E-12 76.9 6.7 140 1-146 1-159 (494) 147 PRK08774 consensus 98.7 1.5E-07 3.7E-12 73.6 9.0 35 1-35 1-37 (402) 148 PRK07364 2-octaprenyl-6-methox 98.7 9.9E-08 2.5E-12 74.8 8.1 58 228-290 134-191 (413) 149 PRK12834 putative FAD-binding 98.7 2.5E-08 6.4E-13 79.1 4.7 44 1-44 1-46 (549) 150 PRK07608 hypothetical protein; 98.6 4E-08 1E-12 77.6 5.2 36 1-36 4-39 (389) 151 PRK07494 2-octaprenyl-6-methox 98.6 1.6E-07 4E-12 73.3 7.9 35 3-37 6-40 (386) 152 PRK06185 hypothetical protein; 98.6 2.3E-07 5.9E-12 72.1 8.6 34 3-36 7-40 (409) 153 PRK06126 hypothetical protein; 98.6 9.4E-08 2.4E-12 74.9 6.0 34 3-36 8-41 (545) 154 TIGR01790 carotene-cycl lycope 98.6 8.9E-08 2.3E-12 75.1 5.7 135 4-146 1-148 (419) 155 pfam01494 FAD_binding_3 FAD bi 98.6 6.2E-07 1.6E-11 69.0 9.4 59 220-278 106-165 (349) 156 PRK08163 salicylate hydroxylas 98.6 6.1E-07 1.5E-11 69.1 9.3 35 3-37 5-39 (396) 157 PRK08132 hypothetical protein; 98.6 1.2E-07 3E-12 74.2 5.5 35 2-36 23-57 (549) 158 TIGR02032 GG-red-SF geranylger 98.6 7.2E-08 1.8E-12 75.8 4.4 34 3-36 1-34 (343) 159 PRK09126 hypothetical protein; 98.5 1.4E-07 3.7E-12 73.6 5.1 48 227-278 123-170 (392) 160 TIGR00031 UDP-GALP_mutase UDP- 98.5 1.3E-07 3.3E-12 74.0 4.7 47 2-48 1-48 (390) 161 PRK04176 ribulose-1,5-biphosph 98.5 2.1E-07 5.4E-12 72.4 5.8 44 3-46 26-69 (257) 162 PRK08849 2-octaprenyl-3-methyl 98.5 1.7E-07 4.4E-12 73.0 5.2 35 1-35 1-36 (384) 163 PRK07208 hypothetical protein; 98.5 2.2E-07 5.5E-12 72.3 5.7 41 2-42 3-43 (474) 164 PRK07588 hypothetical protein; 98.5 1.5E-07 3.9E-12 73.4 4.7 54 221-279 109-162 (391) 165 COG0445 GidA Flavin-dependent 98.5 4.6E-07 1.2E-11 69.9 6.8 130 3-144 5-156 (621) 166 PRK07333 2-octaprenyl-6-methox 98.5 1.3E-06 3.4E-11 66.6 9.0 56 219-278 115-170 (403) 167 PRK08013 hypothetical protein; 98.5 2.3E-07 5.9E-12 72.1 5.1 35 1-35 1-36 (400) 168 pfam01946 Thi4 Thi4 family. Th 98.5 1.9E-07 5E-12 72.6 4.6 43 3-45 18-60 (229) 169 PRK07233 hypothetical protein; 98.4 5.2E-07 1.3E-11 69.6 5.2 55 215-273 197-251 (430) 170 PRK05714 2-octaprenyl-3-methyl 98.4 5.2E-07 1.3E-11 69.5 4.9 35 1-35 1-35 (405) 171 TIGR03467 HpnE squalene-associ 98.4 5.6E-07 1.4E-11 69.3 5.0 37 5-41 1-37 (430) 172 KOG0029 consensus 98.4 6.4E-07 1.6E-11 68.9 5.2 38 2-39 15-52 (501) 173 TIGR02352 thiamin_ThiO glycine 98.3 2.2E-06 5.5E-11 65.0 7.2 203 5-274 1-207 (357) 174 TIGR02023 BchP-ChlP geranylger 98.3 5.5E-07 1.4E-11 69.4 3.8 37 3-39 1-41 (408) 175 TIGR00292 TIGR00292 thiazole b 98.3 6.4E-07 1.6E-11 68.9 4.0 39 1-39 20-60 (283) 176 PRK08850 2-octaprenyl-6-methox 98.3 1.3E-06 3.4E-11 66.6 5.2 34 1-34 1-36 (405) 177 PRK05732 2-octaprenyl-6-methox 98.3 1.3E-06 3.3E-11 66.6 5.1 54 221-278 118-172 (395) 178 PRK06834 hypothetical protein; 98.3 1.4E-06 3.6E-11 66.4 5.2 139 1-146 1-156 (488) 179 COG1635 THI4 Ribulose 1,5-bisp 98.3 1E-06 2.6E-11 67.4 4.3 38 3-40 31-68 (262) 180 COG0578 GlpA Glycerol-3-phosph 98.3 4.8E-07 1.2E-11 69.8 2.6 42 1-42 11-52 (532) 181 PRK09897 hypothetical protein; 98.3 2.2E-05 5.7E-10 57.6 11.0 179 1-194 1-211 (535) 182 PRK08773 2-octaprenyl-3-methyl 98.2 1.5E-06 3.9E-11 66.2 4.9 55 220-278 118-172 (392) 183 pfam06039 Mqo Malate:quinone o 98.2 9.9E-07 2.5E-11 67.5 3.9 264 2-308 4-277 (489) 184 COG0654 UbiH 2-polyprenyl-6-me 98.2 1.6E-06 4.2E-11 65.9 4.9 58 218-278 107-165 (387) 185 PRK12810 gltD glutamate syntha 98.2 8.3E-08 2.1E-12 75.3 -1.9 90 174-276 143-242 (472) 186 PRK07573 sdhA succinate dehydr 98.2 1.8E-06 4.6E-11 65.6 4.8 34 2-35 33-66 (638) 187 PTZ00306 NADH-dependent fumara 98.2 2E-06 5.2E-11 65.2 5.1 38 4-41 411-448 (1167) 188 COG0562 Glf UDP-galactopyranos 98.2 1.9E-06 4.8E-11 65.4 4.9 44 2-45 1-44 (374) 189 TIGR02733 desat_CrtD C-3',4' d 98.2 1.5E-06 3.8E-11 66.2 4.4 352 4-410 3-445 (499) 190 PRK09754 phenylpropionate diox 98.2 6.3E-06 1.6E-10 61.6 7.3 95 4-147 146-242 (400) 191 TIGR02485 CobZ_N-term precorri 98.2 2.3E-06 5.9E-11 64.8 5.0 39 3-41 2-42 (467) 192 PRK13339 malate:quinone oxidor 98.2 1.3E-06 3.4E-11 66.5 3.7 260 2-308 6-279 (497) 193 PRK11101 glpA sn-glycerol-3-ph 98.2 2.8E-06 7.1E-11 64.2 5.3 40 1-40 4-43 (545) 194 PRK07045 putative monooxygenas 98.2 2.6E-06 6.7E-11 64.4 5.1 49 228-278 120-168 (388) 195 PRK13984 putative oxidoreducta 98.2 1.1E-07 2.8E-12 74.4 -2.2 87 174-273 283-378 (604) 196 PRK12266 glpD glycerol-3-phosp 98.2 3.2E-06 8.1E-11 63.8 5.3 41 3-43 7-47 (503) 197 PRK08948 consensus 98.2 1.2E-05 3.1E-10 59.6 8.1 54 221-278 115-169 (392) 198 PRK13369 glycerol-3-phosphate 98.2 3.4E-06 8.7E-11 63.6 5.1 41 3-43 7-47 (503) 199 TIGR03385 CoA_CoA_reduc CoA-di 98.2 8.9E-06 2.3E-10 60.6 7.2 94 4-147 139-234 (427) 200 PRK06847 hypothetical protein; 98.2 2.5E-07 6.3E-12 71.9 -0.8 56 219-278 111-166 (375) 201 PRK08020 ubiF 2-octaprenyl-3-m 98.1 3.8E-06 9.8E-11 63.2 5.2 54 221-278 118-172 (391) 202 COG1053 SdhA Succinate dehydro 98.1 3.6E-06 9.1E-11 63.4 5.1 39 1-39 5-43 (562) 203 TIGR02734 crtI_fam phytoene de 98.1 2.6E-06 6.6E-11 64.5 4.2 35 5-39 1-35 (526) 204 PRK12769 putative oxidoreducta 98.1 1.7E-07 4.4E-12 73.0 -2.1 87 174-273 327-422 (654) 205 PRK11883 protoporphyrinogen ox 98.1 5.2E-06 1.3E-10 62.3 5.5 38 4-41 2-41 (452) 206 COG0665 DadA Glycine/D-amino a 98.1 4.8E-06 1.2E-10 62.5 5.3 39 1-39 3-41 (387) 207 KOG2415 consensus 98.1 3.7E-06 9.4E-11 63.3 4.2 45 3-47 77-127 (621) 208 COG2509 Uncharacterized FAD-de 98.1 4.2E-06 1.1E-10 62.9 4.5 59 215-276 173-231 (486) 209 PRK04965 nitric oxide reductas 98.1 1.2E-05 3.1E-10 59.5 6.9 31 5-35 144-174 (378) 210 TIGR01318 gltD_gamma_fam gluta 98.1 4.2E-07 1.1E-11 70.2 -0.7 90 172-274 141-239 (480) 211 PRK12809 putative oxidoreducta 98.1 2.2E-07 5.5E-12 72.3 -2.2 86 175-273 311-405 (639) 212 PRK08294 phenol 2-monooxygenas 98.1 5.6E-06 1.4E-10 62.0 4.8 34 2-35 32-66 (634) 213 PRK08243 4-hydroxybenzoate 3-m 98.1 7.4E-06 1.9E-10 61.1 5.2 35 1-35 1-35 (392) 214 COG3349 Uncharacterized conser 98.1 7.4E-06 1.9E-10 61.1 5.1 42 1-44 1-42 (485) 215 PRK06475 salicylate hydroxylas 98.1 7E-06 1.8E-10 61.3 5.0 35 3-37 3-37 (400) 216 PRK05335 tRNA (uracil-5-)-meth 98.0 7.6E-06 1.9E-10 61.1 4.8 33 1-33 2-34 (434) 217 PRK11749 putative oxidoreducta 98.0 4.1E-07 1E-11 70.3 -1.7 90 174-276 140-239 (460) 218 PRK05675 sdhA succinate dehydr 98.0 2.7E-05 7E-10 57.0 7.5 26 15-40 1-26 (570) 219 PRK06370 mercuric reductase; V 98.0 2.9E-05 7.4E-10 56.8 7.5 33 4-36 172-204 (459) 220 PRK06617 2-octaprenyl-6-methox 98.0 9.9E-06 2.5E-10 60.2 5.1 33 3-35 2-34 (374) 221 PRK06912 acoL dihydrolipoamide 98.0 3.3E-05 8.5E-10 56.4 7.7 95 4-147 172-269 (458) 222 PRK06567 putative bifunctional 98.0 7.7E-06 2E-10 61.0 4.3 218 3-247 402-690 (1048) 223 PRK12814 putative NADPH-depend 98.0 3.5E-07 8.9E-12 70.8 -2.6 88 174-274 193-289 (652) 224 PRK12416 protoporphyrinogen ox 98.0 1.3E-05 3.3E-10 59.3 5.2 38 1-39 1-44 (466) 225 pfam07992 Pyr_redox_2 Pyridine 98.0 9.7E-07 2.5E-11 67.6 -0.5 97 176-278 1-110 (277) 226 pfam03486 HI0933_like HI0933-l 98.0 8.7E-07 2.2E-11 67.9 -0.8 82 191-277 83-168 (405) 227 PRK06847 hypothetical protein; 98.0 1.3E-05 3.4E-10 59.3 5.2 36 1-37 4-39 (375) 228 PRK06753 hypothetical protein; 98.0 1.2E-05 3.1E-10 59.6 5.0 35 1-37 1-35 (373) 229 PRK09564 coenzyme A disulfide 98.0 1.2E-06 3E-11 66.9 -0.3 94 4-147 151-247 (443) 230 PRK13512 coenzyme A disulfide 98.0 1.8E-06 4.6E-11 65.6 0.5 33 4-36 150-182 (438) 231 COG1249 Lpd Pyruvate/2-oxoglut 98.0 5.1E-05 1.3E-09 55.0 7.9 33 5-37 176-208 (454) 232 PRK12771 putative glutamate sy 97.9 6.3E-07 1.6E-11 68.9 -1.9 88 174-274 137-233 (560) 233 KOG2311 consensus 97.9 1.6E-05 4.2E-10 58.6 5.3 33 2-34 28-60 (679) 234 pfam00743 FMO-like Flavin-bind 97.9 1.7E-06 4.4E-11 65.8 0.2 29 5-33 186-214 (532) 235 PRK05976 dihydrolipoamide dehy 97.9 4E-05 1E-09 55.8 7.1 33 4-36 177-209 (464) 236 PRK07818 dihydrolipoamide dehy 97.9 9.7E-05 2.5E-09 53.0 9.0 33 4-36 174-206 (467) 237 PRK02106 choline dehydrogenase 97.9 1.5E-05 3.8E-10 58.9 4.8 34 2-35 5-39 (555) 238 PRK07190 hypothetical protein; 97.9 1.8E-05 4.6E-10 58.3 5.0 34 3-36 6-39 (480) 239 TIGR01816 sdhA_forward succina 97.9 1.2E-05 3.1E-10 59.5 4.0 32 2-33 2-33 (615) 240 PRK07251 pyridine nucleotide-d 97.9 6.1E-05 1.5E-09 54.5 7.6 33 4-36 159-191 (438) 241 PRK05249 soluble pyridine nucl 97.9 8.4E-05 2.1E-09 53.5 8.3 94 4-147 178-274 (465) 242 COG0446 HcaD Uncharacterized N 97.9 6.9E-05 1.7E-09 54.1 7.8 36 4-39 138-173 (415) 243 PRK12831 putative oxidoreducta 97.9 9.3E-07 2.4E-11 67.7 -1.8 90 174-274 140-239 (464) 244 TIGR01350 lipoamide_DH dihydro 97.9 6.1E-05 1.6E-09 54.4 7.5 136 5-192 181-331 (481) 245 TIGR02053 MerA mercuric reduct 97.9 2.2E-05 5.6E-10 57.7 4.9 100 4-153 183-290 (494) 246 PRK13748 putative mercuric red 97.9 8.1E-05 2.1E-09 53.6 7.8 35 172-206 96-130 (561) 247 PRK12778 putative bifunctional 97.9 1E-06 2.6E-11 67.4 -2.1 87 175-273 440-535 (760) 248 KOG2820 consensus 97.9 0.00014 3.7E-09 51.7 8.9 36 1-36 6-41 (399) 249 COG1232 HemY Protoporphyrinoge 97.9 2.5E-05 6.4E-10 57.3 4.9 38 1-40 1-40 (444) 250 PRK06416 dihydrolipoamide dehy 97.9 4.8E-05 1.2E-09 55.2 6.3 33 4-36 174-206 (462) 251 PRK08010 pyridine nucleotide-d 97.8 0.00011 2.8E-09 52.6 8.2 93 4-147 160-255 (441) 252 TIGR03315 Se_ygfK putative sel 97.8 2.1E-06 5.3E-11 65.2 -0.7 86 175-274 538-632 (1012) 253 PRK05868 hypothetical protein; 97.8 2.3E-06 5.9E-11 64.8 -0.7 49 227-279 116-164 (372) 254 PRK07538 hypothetical protein; 97.8 2.8E-05 7.2E-10 56.9 4.9 34 4-37 2-35 (413) 255 PRK06116 glutathione reductase 97.8 0.00012 3E-09 52.4 7.9 33 4-36 169-201 (450) 256 PRK09853 putative selenate red 97.8 2.5E-06 6.3E-11 64.6 -0.7 85 175-274 551-645 (1032) 257 COG0493 GltD NADPH-dependent g 97.8 1.8E-05 4.6E-10 58.3 3.6 89 175-276 124-222 (457) 258 PRK06996 hypothetical protein; 97.8 3.2E-05 8.1E-10 56.5 4.7 59 219-278 119-177 (397) 259 PRK05868 hypothetical protein; 97.8 4.3E-05 1.1E-09 55.6 5.3 35 1-36 1-35 (372) 260 PRK08244 hypothetical protein; 97.8 3.1E-06 7.9E-11 63.9 -0.6 18 446-463 476-493 (494) 261 PRK06834 hypothetical protein; 97.8 2.2E-06 5.7E-11 64.9 -1.4 17 447-463 469-485 (488) 262 PRK06292 dihydrolipoamide dehy 97.8 8.7E-05 2.2E-09 53.4 6.7 34 4-37 171-204 (460) 263 PRK06327 dihydrolipoamide dehy 97.8 0.00013 3.4E-09 52.0 7.6 34 4-37 185-218 (475) 264 PRK01747 mnmC 5-methylaminomet 97.8 3.7E-05 9.4E-10 56.0 4.7 35 4-38 258-292 (660) 265 COG3380 Predicted NAD/FAD-depe 97.8 4E-05 1E-09 55.8 4.8 37 4-40 3-39 (331) 266 PRK06115 dihydrolipoamide dehy 97.8 0.00014 3.7E-09 51.7 7.6 33 4-36 176-208 (466) 267 COG1231 Monoamine oxidase [Ami 97.8 4.8E-05 1.2E-09 55.2 5.1 41 3-43 8-48 (450) 268 KOG0042 consensus 97.7 6E-05 1.5E-09 54.5 5.4 40 2-41 67-106 (680) 269 PRK07045 putative monooxygenas 97.7 6.9E-06 1.8E-10 61.4 0.5 34 3-36 6-39 (388) 270 PRK12770 putative glutamate sy 97.7 4.1E-06 1E-10 63.0 -0.7 103 175-277 18-132 (350) 271 PRK07845 flavoprotein disulfid 97.7 0.00017 4.4E-09 51.2 7.4 94 4-147 180-276 (467) 272 TIGR03219 salicylate_mono sali 97.7 6.6E-05 1.7E-09 54.2 5.1 36 1-38 1-37 (414) 273 PRK06475 salicylate hydroxylas 97.7 5.5E-06 1.4E-10 62.1 -0.5 61 218-279 110-171 (400) 274 TIGR03169 Nterm_to_SelD pyridi 97.7 5.9E-06 1.5E-10 61.8 -0.7 97 176-279 1-111 (364) 275 PRK07236 hypothetical protein; 97.7 7.2E-05 1.8E-09 54.0 4.7 33 3-35 7-39 (386) 276 TIGR01988 Ubi-OHases Ubiquinon 97.7 5.6E-05 1.4E-09 54.7 4.1 197 218-439 126-384 (445) 277 COG2303 BetA Choline dehydroge 97.7 6.6E-05 1.7E-09 54.2 4.5 36 1-36 6-41 (542) 278 PRK05257 malate:quinone oxidor 97.6 4.4E-05 1.1E-09 55.5 3.3 263 1-308 8-282 (499) 279 PRK07846 mycothione/glutathion 97.6 0.00027 6.9E-09 49.8 7.3 34 4-37 170-203 (453) 280 PRK08773 2-octaprenyl-3-methyl 97.6 7.3E-06 1.9E-10 61.2 -0.9 136 2-146 6-169 (392) 281 TIGR01316 gltA glutamate synth 97.6 9.8E-06 2.5E-10 60.2 -0.4 88 175-273 143-239 (462) 282 pfam05834 Lycopene_cycl Lycope 97.6 0.0001 2.7E-09 52.8 4.7 37 4-40 1-41 (374) 283 TIGR01812 sdhA_frdA_Gneg succi 97.6 8.8E-05 2.3E-09 53.3 4.3 30 4-33 1-33 (636) 284 COG1252 Ndh NADH dehydrogenase 97.6 1.1E-05 2.9E-10 59.8 -0.4 99 174-279 3-115 (405) 285 PRK06467 dihydrolipoamide dehy 97.6 0.00094 2.4E-08 45.8 9.3 33 4-36 176-208 (472) 286 KOG0399 consensus 97.6 3.2E-05 8E-10 56.6 1.8 87 175-274 1786-1881(2142) 287 PRK08020 ubiF 2-octaprenyl-3-m 97.6 7.8E-06 2E-10 61.0 -1.3 136 3-146 6-169 (391) 288 PRK12775 putative trifunctiona 97.6 6.4E-06 1.6E-10 61.6 -1.8 88 175-273 433-529 (993) 289 TIGR03452 mycothione_red mycot 97.6 0.0003 7.6E-09 49.4 6.7 34 4-37 171-204 (452) 290 PRK09126 hypothetical protein; 97.5 1.3E-05 3.3E-10 59.4 -0.4 138 1-146 2-167 (392) 291 PRK07364 2-octaprenyl-6-methox 97.5 1.5E-05 3.8E-10 58.9 -0.2 139 1-146 16-180 (413) 292 KOG1336 consensus 97.5 0.00081 2.1E-08 46.3 8.7 96 175-277 75-183 (478) 293 KOG4254 consensus 97.5 9.8E-05 2.5E-09 53.0 3.9 48 2-49 14-61 (561) 294 PRK06753 hypothetical protein; 97.5 1.2E-05 3.1E-10 59.5 -0.8 54 219-278 102-155 (373) 295 PRK05714 2-octaprenyl-3-methyl 97.5 1.1E-05 2.9E-10 59.8 -1.1 63 219-289 116-178 (405) 296 KOG2404 consensus 97.5 0.0013 3.4E-08 44.7 9.4 38 4-41 11-48 (477) 297 COG0654 UbiH 2-polyprenyl-6-me 97.5 1.6E-05 4.1E-10 58.7 -0.5 34 1-34 1-34 (387) 298 PTZ00052 thioredoxin reductase 97.5 0.00055 1.4E-08 47.5 7.2 32 4-35 224-255 (541) 299 COG3573 Predicted oxidoreducta 97.5 0.0002 5.2E-09 50.7 5.0 42 2-43 5-48 (552) 300 TIGR01377 soxA_mon sarcosine o 97.4 0.00016 4E-09 51.5 4.1 68 216-289 149-220 (401) 301 TIGR01373 soxB sarcosine oxida 97.4 0.00023 5.8E-09 50.3 4.5 80 2-86 30-113 (407) 302 PRK07236 hypothetical protein; 97.4 2.5E-05 6.5E-10 57.2 -0.5 45 230-278 113-157 (386) 303 PRK07190 hypothetical protein; 97.4 1.7E-05 4.3E-10 58.6 -1.5 44 102-146 119-165 (480) 304 PRK10262 thioredoxin reductase 97.4 2E-05 5.2E-10 58.0 -1.1 96 175-276 7-118 (321) 305 PRK08294 phenol 2-monooxygenas 97.4 3.7E-05 9.4E-10 56.1 0.3 19 128-146 192-210 (634) 306 PRK12779 putative bifunctional 97.4 1.3E-05 3.3E-10 59.4 -2.1 90 175-276 307-406 (944) 307 KOG0685 consensus 97.3 0.00034 8.7E-09 49.0 4.7 36 5-40 24-60 (498) 308 TIGR03140 AhpF alkyl hydropero 97.3 2.9E-05 7.5E-10 56.8 -0.9 100 174-277 212-325 (515) 309 PTZ00318 NADH dehydrogenase; P 97.3 4.9E-05 1.2E-09 55.2 0.1 19 5-23 182-200 (514) 310 TIGR03143 AhpF_homolog putativ 97.3 2.9E-05 7.3E-10 56.9 -1.0 34 4-37 145-178 (555) 311 KOG1399 consensus 97.3 5.9E-05 1.5E-09 54.6 0.5 106 174-279 6-159 (448) 312 TIGR02374 nitri_red_nirB nitri 97.3 0.00066 1.7E-08 46.9 5.8 94 6-148 151-252 (813) 313 PRK07538 hypothetical protein; 97.2 5E-05 1.3E-09 55.1 -0.4 49 230-278 119-168 (413) 314 PRK08243 4-hydroxybenzoate 3-m 97.2 5.5E-05 1.4E-09 54.8 -0.3 57 221-278 109-166 (392) 315 PRK01747 mnmC 5-methylaminomet 97.2 4.3E-05 1.1E-09 55.5 -0.9 35 173-207 255-289 (660) 316 PRK05732 2-octaprenyl-6-methox 97.2 3.4E-05 8.8E-10 56.3 -1.5 137 1-146 1-169 (395) 317 TIGR01989 COQ6 Ubiquinone bios 97.2 0.0004 1E-08 48.6 3.9 33 3-35 1-37 (481) 318 pfam01266 DAO FAD dependent ox 97.2 4.1E-05 1.1E-09 55.7 -1.2 36 4-39 1-36 (309) 319 TIGR02730 carot_isom carotene 97.2 0.00042 1.1E-08 48.4 3.9 37 3-39 1-37 (506) 320 KOG2495 consensus 97.2 0.0013 3.4E-08 44.7 6.5 105 175-280 56-175 (491) 321 PTZ00153 lipoamide dehydrogena 97.2 0.0023 5.8E-08 43.0 7.5 47 260-313 279-328 (673) 322 TIGR02028 ChlP geranylgeranyl 97.2 0.00038 9.7E-09 48.7 3.5 99 5-114 3-115 (401) 323 PRK07494 2-octaprenyl-6-methox 97.2 5.3E-05 1.3E-09 54.9 -1.0 56 219-278 113-168 (386) 324 PRK08774 consensus 97.2 9.5E-05 2.4E-09 53.1 0.3 49 229-278 124-173 (402) 325 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00068 1.7E-08 46.8 4.5 34 1-36 1-36 (770) 326 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.00062 1.6E-08 47.1 4.1 32 4-35 1-37 (425) 327 PRK06996 hypothetical protein; 97.1 9.6E-05 2.4E-09 53.0 -0.3 136 3-146 12-174 (397) 328 PRK08948 consensus 97.0 7.8E-05 2E-09 53.7 -1.1 136 3-146 1-166 (392) 329 PRK13977 myosin-cross-reactive 97.0 0.0008 2E-08 46.3 3.7 62 215-276 226-294 (577) 330 PRK08013 hypothetical protein; 96.9 0.00012 3.1E-09 52.2 -0.9 47 228-278 125-171 (400) 331 TIGR00137 gid gid protein; Int 96.9 0.0013 3.3E-08 44.8 4.2 32 4-35 2-33 (444) 332 COG2907 Predicted NAD/FAD-bind 96.9 0.00091 2.3E-08 45.9 3.5 36 4-40 10-45 (447) 333 pfam00070 Pyr_redox Pyridine n 96.9 0.0032 8.1E-08 42.0 6.2 32 5-36 2-33 (82) 334 KOG1298 consensus 96.9 0.0014 3.5E-08 44.6 4.2 33 3-35 46-78 (509) 335 PRK07608 hypothetical protein; 96.8 0.00014 3.5E-09 51.9 -1.2 55 220-278 117-171 (389) 336 KOG2614 consensus 96.8 0.0022 5.6E-08 43.1 4.9 44 1-44 1-46 (420) 337 PTZ00306 NADH-dependent fumara 96.8 0.00028 7.2E-09 49.6 0.2 19 127-145 601-619 (1167) 338 TIGR03219 salicylate_mono sali 96.7 0.00019 4.9E-09 50.8 -1.0 53 220-278 110-162 (414) 339 COG1148 HdrA Heterodisulfide r 96.7 0.00036 9.2E-09 48.9 0.2 83 174-256 124-219 (622) 340 COG0492 TrxB Thioredoxin reduc 96.7 0.00034 8.7E-09 49.0 -0.1 97 175-277 4-117 (305) 341 pfam04820 Trp_halogenase Trypt 96.7 0.0026 6.7E-08 42.6 4.4 104 216-331 158-263 (457) 342 COG2072 TrkA Predicted flavopr 96.7 0.00035 8.9E-09 49.0 -0.2 35 175-209 9-44 (443) 343 TIGR02360 pbenz_hydroxyl 4-hyd 96.7 0.0032 8.1E-08 42.0 4.7 160 1-168 1-192 (393) 344 KOG2853 consensus 96.6 0.0023 5.9E-08 43.0 3.9 62 3-65 87-163 (509) 345 PRK08850 2-octaprenyl-6-methox 96.6 0.00024 6E-09 50.2 -1.2 48 227-278 124-171 (405) 346 KOG1276 consensus 96.6 0.0033 8.5E-08 41.8 4.5 37 3-39 12-50 (491) 347 KOG2665 consensus 96.6 0.0017 4.3E-08 44.0 2.9 231 2-314 48-300 (453) 348 TIGR01292 TRX_reduct thioredox 96.6 0.00039 9.8E-09 48.6 -0.6 126 176-313 2-159 (321) 349 COG0644 FixC Dehydrogenases (f 96.5 0.00039 1E-08 48.6 -0.8 36 303-338 266-306 (396) 350 PRK09897 hypothetical protein; 96.5 0.00065 1.7E-08 47.0 0.2 82 192-277 80-169 (535) 351 PRK08849 2-octaprenyl-3-methyl 96.5 0.0002 5.1E-09 50.7 -2.5 47 228-278 124-170 (384) 352 KOG1238 consensus 96.4 0.0035 9E-08 41.6 3.8 35 2-36 57-92 (623) 353 pfam00996 GDI GDP dissociation 96.4 0.006 1.5E-07 40.0 4.9 40 2-41 4-43 (439) 354 PRK10157 putative oxidoreducta 96.4 0.00043 1.1E-08 48.3 -1.1 53 221-277 114-166 (428) 355 pfam01134 GIDA Glucose inhibit 96.3 0.0008 2E-08 46.3 -0.3 39 298-337 346-385 (391) 356 TIGR01789 lycopene_cycl lycope 96.2 0.0073 1.9E-07 39.3 4.3 38 4-41 1-40 (392) 357 TIGR02731 phytoene_desat phyto 96.2 0.0073 1.9E-07 39.3 4.2 40 5-44 2-41 (454) 358 KOG3855 consensus 96.2 0.0063 1.6E-07 39.8 3.8 33 2-34 36-72 (481) 359 pfam01593 Amino_oxidase Flavin 96.1 0.0061 1.5E-07 39.9 3.7 52 218-273 207-258 (444) 360 TIGR01176 fum_red_Fp fumarate 96.1 0.008 2E-07 39.1 4.0 31 3-33 4-36 (585) 361 TIGR02732 zeta_caro_desat caro 96.0 0.01 2.6E-07 38.3 4.4 36 5-40 2-37 (474) 362 TIGR02061 aprA adenylylsulfate 96.0 0.0064 1.6E-07 39.8 3.3 32 4-35 1-36 (651) 363 KOG2960 consensus 95.9 0.0025 6.5E-08 42.7 1.0 41 3-43 77-119 (328) 364 COG3380 Predicted NAD/FAD-depe 95.9 0.002 5.2E-08 43.4 0.4 41 229-272 117-157 (331) 365 KOG1335 consensus 95.8 0.019 4.8E-07 36.4 4.8 35 5-39 214-248 (506) 366 PRK10015 hypothetical protein; 95.7 0.0012 3E-08 45.1 -1.4 53 221-277 114-166 (429) 367 PRK12409 D-amino acid dehydrog 95.7 0.0016 4.1E-08 44.2 -0.9 37 1-38 1-37 (410) 368 PRK07208 hypothetical protein; 95.7 0.0018 4.5E-08 43.8 -0.7 57 217-273 214-271 (474) 369 PRK09496 trkA potassium transp 95.7 0.019 5E-07 36.2 4.6 33 1-35 1-33 (455) 370 pfam01262 AlaDh_PNT_C Alanine 95.6 0.024 6E-07 35.6 4.7 32 4-35 22-53 (150) 371 PRK06617 2-octaprenyl-6-methox 95.5 0.0019 4.9E-08 43.5 -1.1 46 228-278 118-163 (374) 372 KOG0029 consensus 95.5 0.0033 8.5E-08 41.8 0.1 40 229-272 228-268 (501) 373 TIGR01790 carotene-cycl lycope 95.5 0.0042 1.1E-07 41.1 0.6 55 216-275 92-148 (419) 374 PRK11883 protoporphyrinogen ox 95.5 0.0024 6.1E-08 42.9 -0.7 44 226-273 230-273 (452) 375 TIGR02023 BchP-ChlP geranylger 95.5 0.011 2.7E-07 38.2 2.6 52 225-277 106-167 (408) 376 pfam00890 FAD_binding_2 FAD bi 95.4 0.0031 8E-08 42.0 -0.3 26 292-317 357-388 (401) 377 COG0445 GidA Flavin-dependent 95.3 0.0085 2.2E-07 38.9 1.6 36 299-335 352-388 (621) 378 PRK07233 hypothetical protein; 95.3 0.0031 8E-08 42.0 -0.6 37 5-41 2-38 (430) 379 PRK00711 D-amino acid dehydrog 95.3 0.0027 6.8E-08 42.5 -0.9 36 1-38 1-36 (416) 380 KOG2614 consensus 95.2 0.0051 1.3E-07 40.5 0.4 29 307-335 289-322 (420) 381 PRK06185 hypothetical protein; 95.2 0.0023 5.8E-08 43.0 -1.4 51 227-278 121-172 (409) 382 COG0569 TrkA K+ transport syst 95.1 0.037 9.5E-07 34.2 4.6 33 1-35 1-33 (225) 383 PRK11445 putative oxidoreducta 95.1 0.0038 9.7E-08 41.4 -0.5 50 228-278 111-160 (348) 384 TIGR01424 gluta_reduc_2 glutat 95.1 0.033 8.3E-07 34.6 4.2 54 219-275 105-160 (478) 385 PRK06522 2-dehydropantoate 2-r 95.1 0.0031 7.9E-08 42.1 -1.2 33 1-35 1-33 (307) 386 PRK12921 2-dehydropantoate 2-r 95.0 0.0034 8.7E-08 41.8 -1.1 32 1-34 1-32 (306) 387 pfam03721 UDPG_MGDP_dh_N UDP-g 95.0 0.044 1.1E-06 33.7 4.6 33 1-35 1-33 (185) 388 COG5044 MRS6 RAB proteins gera 94.9 0.046 1.2E-06 33.5 4.6 40 2-41 6-45 (434) 389 COG1251 NirB NAD(P)H-nitrite r 94.9 0.012 3E-07 37.8 1.5 31 5-35 148-178 (793) 390 PRK07588 hypothetical protein; 94.9 0.0044 1.1E-07 41.0 -0.8 35 1-37 1-35 (391) 391 COG1206 Gid NAD(FAD)-utilizing 94.9 0.034 8.6E-07 34.5 3.7 33 3-35 4-36 (439) 392 PRK08163 salicylate hydroxylas 94.8 0.005 1.3E-07 40.5 -0.6 56 219-278 113-169 (396) 393 KOG4405 consensus 94.8 0.035 8.8E-07 34.4 3.7 37 3-39 9-45 (547) 394 TIGR00692 tdh L-threonine 3-de 94.7 0.082 2.1E-06 31.7 5.3 42 165-207 153-196 (341) 395 pfam01946 Thi4 Thi4 family. Th 94.6 0.0088 2.2E-07 38.8 0.3 37 175-211 18-54 (229) 396 PTZ00188 adrenodoxin reductase 94.5 0.0037 9.3E-08 41.5 -1.9 101 154-273 25-136 (506) 397 KOG1298 consensus 94.5 0.017 4.4E-07 36.6 1.5 46 229-275 162-208 (509) 398 PRK07573 sdhA succinate dehydr 94.5 0.02 5.1E-07 36.2 1.8 32 292-326 404-435 (638) 399 TIGR00137 gid gid protein; Int 94.5 0.012 3.1E-07 37.8 0.6 37 281-317 307-352 (444) 400 KOG1439 consensus 94.4 0.017 4.4E-07 36.6 1.4 41 1-41 1-43 (440) 401 PRK09424 pntA NAD(P) transhydr 94.4 0.055 1.4E-06 32.9 4.0 36 173-208 164-199 (510) 402 TIGR03467 HpnE squalene-associ 94.4 0.007 1.8E-07 39.5 -0.6 53 217-272 210-262 (430) 403 pfam02558 ApbA Ketopantoate re 94.4 0.0081 2.1E-07 39.0 -0.3 31 5-35 1-31 (150) 404 PRK05192 tRNA uridine 5-carbox 94.4 0.0069 1.7E-07 39.5 -0.7 38 297-335 352-390 (621) 405 PRK06522 2-dehydropantoate 2-r 94.4 0.075 1.9E-06 32.0 4.6 34 176-209 2-35 (307) 406 PRK06184 hypothetical protein; 94.4 0.007 1.8E-07 39.5 -0.7 59 219-278 116-174 (503) 407 PRK08229 2-dehydropantoate 2-r 94.4 0.0068 1.7E-07 39.6 -0.8 34 1-34 1-34 (341) 408 COG0686 Ald Alanine dehydrogen 94.4 0.0087 2.2E-07 38.8 -0.3 43 173-215 167-209 (371) 409 TIGR01438 TGR thioredoxin and 94.3 0.024 6.2E-07 35.5 1.9 30 5-34 191-220 (513) 410 PRK13369 glycerol-3-phosphate 94.3 0.0089 2.3E-07 38.7 -0.4 49 225-273 165-214 (503) 411 PRK12416 protoporphyrinogen ox 94.2 0.0079 2E-07 39.1 -0.8 48 219-272 230-277 (466) 412 TIGR01810 betA choline dehydro 94.2 0.04 1E-06 34.0 2.8 100 216-317 200-311 (540) 413 PRK06126 hypothetical protein; 94.1 0.009 2.3E-07 38.7 -0.6 42 105-146 140-188 (545) 414 PRK12839 hypothetical protein; 94.1 0.011 2.8E-07 38.1 -0.2 56 217-273 218-276 (574) 415 COG1635 THI4 Ribulose 1,5-bisp 94.1 0.016 4.1E-07 36.8 0.7 36 175-210 31-66 (262) 416 PRK08255 salicylyl-CoA 5-hydro 94.1 0.0034 8.7E-08 41.7 -2.8 23 417-439 641-663 (770) 417 TIGR02360 pbenz_hydroxyl 4-hyd 94.0 0.02 5.1E-07 36.1 1.1 52 223-275 111-166 (393) 418 pfam01494 FAD_binding_3 FAD bi 94.0 0.0094 2.4E-07 38.5 -0.6 35 3-37 2-36 (349) 419 COG0686 Ald Alanine dehydrogen 94.0 0.059 1.5E-06 32.7 3.3 22 9-33 17-38 (371) 420 TIGR01984 UbiH 2-polyprenyl-6- 93.9 0.015 3.7E-07 37.1 0.2 187 216-439 119-344 (425) 421 TIGR03026 NDP-sugDHase nucleot 93.9 0.1 2.6E-06 31.0 4.5 33 1-35 1-33 (411) 422 TIGR01811 sdhA_Bsu succinate d 93.9 0.062 1.6E-06 32.6 3.3 28 5-32 1-28 (620) 423 KOG4716 consensus 93.8 0.15 3.9E-06 29.8 5.2 28 250-277 148-175 (503) 424 PRK05335 tRNA (uracil-5-)-meth 93.8 0.01 2.6E-07 38.3 -0.8 39 297-336 323-362 (434) 425 pfam06100 Strep_67kDa_ant Stre 93.8 0.12 3.1E-06 30.4 4.7 38 4-41 4-45 (500) 426 KOG2844 consensus 93.8 0.088 2.2E-06 31.5 4.0 33 3-35 40-73 (856) 427 TIGR00136 gidA glucose-inhibit 93.8 0.069 1.8E-06 32.2 3.4 32 3-34 1-32 (630) 428 PRK08132 hypothetical protein; 93.7 0.012 3E-07 37.9 -0.6 42 105-146 139-185 (549) 429 PRK06183 mhpA 3-(3-hydroxyphen 93.7 0.012 3E-07 37.9 -0.6 42 105-146 128-176 (554) 430 PRK08267 short chain dehydroge 93.6 0.33 8.4E-06 27.3 6.7 34 1-35 1-35 (258) 431 COG3349 Uncharacterized conser 93.6 0.013 3.3E-07 37.5 -0.5 30 216-245 216-245 (485) 432 PRK08229 2-dehydropantoate 2-r 93.6 0.12 3.2E-06 30.4 4.4 31 176-206 4-34 (341) 433 TIGR01320 mal_quin_oxido malat 93.5 0.04 1E-06 33.9 1.8 100 218-321 181-294 (487) 434 PRK08274 tricarballylate dehyd 93.4 0.011 2.8E-07 38.1 -1.2 26 292-317 394-425 (456) 435 PRK11259 solA N-methyltryptoph 93.4 0.013 3.3E-07 37.5 -0.9 51 218-273 152-202 (377) 436 COG1004 Ugd Predicted UDP-gluc 93.3 0.14 3.5E-06 30.0 4.3 33 1-35 1-33 (414) 437 PRK06452 sdhA succinate dehydr 93.3 0.015 3.8E-07 37.1 -0.6 25 292-316 346-371 (566) 438 PRK02472 murD UDP-N-acetylmura 93.3 0.017 4.3E-07 36.7 -0.4 31 5-35 12-42 (450) 439 PRK02006 murD UDP-N-acetylmura 93.3 0.16 4.1E-06 29.5 4.6 31 5-35 10-40 (501) 440 PRK01438 murD UDP-N-acetylmura 93.3 0.018 4.5E-07 36.6 -0.4 31 5-35 17-47 (481) 441 PRK05708 2-dehydropantoate 2-r 93.2 0.15 3.8E-06 29.8 4.3 33 1-35 3-35 (305) 442 COG1233 Phytoene dehydrogenase 93.0 0.018 4.5E-07 36.5 -0.7 41 1-41 2-42 (487) 443 TIGR00031 UDP-GALP_mutase UDP- 92.9 0.021 5.5E-07 35.9 -0.4 89 192-290 123-221 (390) 444 TIGR02352 thiamin_ThiO glycine 92.8 0.019 4.8E-07 36.4 -0.7 48 97-146 157-208 (357) 445 PRK00141 murD UDP-N-acetylmura 92.8 0.21 5.4E-06 28.7 4.6 31 5-35 20-50 (476) 446 PRK07024 short chain dehydroge 92.8 0.53 1.3E-05 25.8 6.6 35 1-35 1-36 (256) 447 PRK07333 2-octaprenyl-6-methox 92.7 0.014 3.7E-07 37.2 -1.4 135 3-146 2-167 (403) 448 PRK12921 2-dehydropantoate 2-r 92.7 0.22 5.5E-06 28.6 4.6 34 176-209 2-35 (306) 449 TIGR03366 HpnZ_proposed putati 92.7 0.2 5E-06 28.9 4.3 35 174-208 121-156 (280) 450 PRK01438 murD UDP-N-acetylmura 92.6 0.21 5.3E-06 28.8 4.4 13 134-146 77-89 (481) 451 COG1748 LYS9 Saccharopine dehy 92.6 0.25 6.4E-06 28.2 4.8 34 1-35 1-35 (389) 452 TIGR03364 HpnW_proposed FAD de 92.6 0.019 4.9E-07 36.3 -0.9 44 221-273 151-195 (365) 453 PRK05650 short chain dehydroge 92.6 0.58 1.5E-05 25.5 6.6 31 5-35 3-34 (270) 454 pfam02737 3HCDH_N 3-hydroxyacy 92.6 0.78 2E-05 24.6 7.5 31 5-35 2-32 (180) 455 PRK06223 malate dehydrogenase; 92.4 0.28 7.2E-06 27.8 4.8 33 1-35 1-35 (312) 456 PRK00141 murD UDP-N-acetylmura 92.3 0.035 9E-07 34.4 0.1 20 407-426 383-402 (476) 457 TIGR02734 crtI_fam phytoene de 92.2 0.028 7.1E-07 35.1 -0.5 86 177-272 194-290 (526) 458 TIGR03201 dearomat_had 6-hydro 92.1 0.25 6.4E-06 28.1 4.3 34 174-207 167-200 (349) 459 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.033 8.5E-07 34.6 -0.2 31 5-35 6-36 (415) 460 TIGR02733 desat_CrtD C-3',4' d 92.1 0.031 7.9E-07 34.8 -0.4 16 301-316 461-476 (499) 461 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.3 7.6E-06 27.6 4.6 11 134-144 75-85 (415) 462 PRK02472 murD UDP-N-acetylmura 92.0 0.27 6.8E-06 28.0 4.3 42 408-459 371-412 (450) 463 PRK06249 2-dehydropantoate 2-r 92.0 0.027 6.9E-07 35.2 -0.7 30 5-34 8-37 (313) 464 PRK07660 consensus 92.0 0.0096 2.5E-07 38.5 -3.1 32 4-35 5-36 (283) 465 COG2509 Uncharacterized FAD-de 91.9 0.031 7.9E-07 34.8 -0.5 45 293-337 437-481 (486) 466 PRK08275 putative oxidoreducta 91.9 0.029 7.3E-07 35.0 -0.7 45 293-337 357-402 (554) 467 KOG0405 consensus 91.8 0.092 2.3E-06 31.3 1.8 57 218-279 113-169 (478) 468 PRK07102 short chain dehydroge 91.8 0.33 8.4E-06 27.3 4.6 34 1-35 1-35 (243) 469 TIGR02356 adenyl_thiF thiazole 91.7 0.23 5.9E-06 28.4 3.7 31 5-35 24-55 (210) 470 COG1232 HemY Protoporphyrinoge 91.7 0.033 8.3E-07 34.6 -0.7 48 218-272 218-265 (444) 471 COG0562 Glf UDP-galactopyranos 91.6 0.047 1.2E-06 33.5 0.1 26 219-244 199-224 (374) 472 TIGR03451 mycoS_dep_FDH mycoth 91.6 0.32 8.1E-06 27.4 4.3 35 174-208 177-212 (358) 473 COG1004 Ugd Predicted UDP-gluc 91.5 0.064 1.6E-06 32.5 0.7 14 134-147 76-89 (414) 474 COG3634 AhpF Alkyl hydroperoxi 91.5 0.3 7.5E-06 27.6 4.1 99 174-274 211-324 (520) 475 COG0665 DadA Glycine/D-amino a 91.5 0.032 8.2E-07 34.7 -0.8 51 218-273 159-210 (387) 476 pfam02254 TrkA_N TrkA-N domain 91.4 0.28 7.1E-06 27.8 3.9 30 5-35 1-30 (115) 477 TIGR01369 CPSaseII_lrg carbamo 91.4 1.1 2.7E-05 23.6 7.9 22 13-34 28-49 (1089) 478 cd05292 LDH_2 A subgroup of L- 91.3 0.45 1.1E-05 26.3 4.9 33 1-35 1-35 (308) 479 PRK06249 2-dehydropantoate 2-r 91.3 0.4 1E-05 26.7 4.6 35 172-206 3-37 (313) 480 cd01078 NAD_bind_H4MPT_DH NADP 91.3 0.4 1E-05 26.7 4.6 30 5-34 31-61 (194) 481 PRK01390 murD UDP-N-acetylmura 91.3 0.38 9.6E-06 26.9 4.5 31 5-35 12-42 (457) 482 PRK05808 3-hydroxybutyryl-CoA 91.3 0.012 3.2E-07 37.7 -3.1 32 4-35 5-36 (282) 483 pfam02558 ApbA Ketopantoate re 91.2 0.35 8.9E-06 27.1 4.3 32 177-208 1-32 (150) 484 PRK00683 murD UDP-N-acetylmura 91.2 0.36 9.1E-06 27.0 4.3 34 1-35 3-36 (418) 485 PRK04176 ribulose-1,5-biphosph 91.2 0.045 1.1E-06 33.6 -0.4 36 175-210 26-61 (257) 486 PRK01710 murD UDP-N-acetylmura 91.2 0.85 2.2E-05 24.3 6.2 31 5-35 17-47 (458) 487 PRK07109 short chain dehydroge 91.1 0.96 2.4E-05 23.9 6.4 31 5-35 11-42 (338) 488 COG2081 Predicted flavoprotein 91.1 0.041 1E-06 33.9 -0.6 81 192-277 87-171 (408) 489 PRK06129 3-hydroxyacyl-CoA deh 91.1 1.1 2.8E-05 23.4 7.2 32 4-35 4-35 (308) 490 PRK09117 consensus 91.0 0.014 3.5E-07 37.4 -3.2 32 4-35 4-35 (282) 491 pfam01210 NAD_Gly3P_dh_N NAD-d 91.0 0.5 1.3E-05 26.0 4.8 31 5-35 3-33 (159) 492 PRK03369 murD UDP-N-acetylmura 91.0 0.41 1E-05 26.6 4.4 31 5-35 15-45 (487) 493 PRK09880 L-idonate 5-dehydroge 90.9 0.42 1.1E-05 26.5 4.4 35 174-208 170-205 (343) 494 PRK03806 murD UDP-N-acetylmura 90.9 0.45 1.1E-05 26.3 4.5 31 5-35 9-39 (438) 495 PRK03803 murD UDP-N-acetylmura 90.9 0.39 9.9E-06 26.8 4.2 31 5-35 10-40 (448) 496 PRK02705 murD UDP-N-acetylmura 90.9 0.41 1.1E-05 26.6 4.4 31 5-35 3-33 (459) 497 PRK08251 short chain dehydroge 90.9 1.1 2.8E-05 23.4 6.5 31 5-35 5-36 (248) 498 KOG1276 consensus 90.8 0.053 1.4E-06 33.1 -0.3 46 416-461 402-456 (491) 499 TIGR01763 MalateDH_bact malate 90.8 0.33 8.4E-06 27.3 3.7 31 1-33 2-34 (308) 500 TIGR00292 TIGR00292 thiazole b 90.7 0.055 1.4E-06 33.0 -0.3 32 175-206 22-55 (283) No 1 >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport. Probab=100.00 E-value=0 Score=1036.50 Aligned_cols=464 Identities=48% Similarity=0.788 Sum_probs=448.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC-CCCCH Q ss_conf 33199998986689999999987993999937997150251366737098999999999999866755816477-53289 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIAS-CHLDL 80 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~-~~~d~ 80 (466) .||||||||||+||-||++||++|+||+|||| +.|||||+|+||||||+||++|++++++.+.+.+||++..+ ..+|| T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK-~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~ 79 (481) T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDW 79 (481) T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEE-CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECH T ss_conf 95189987787727999999864980899980-35687487277675478877667899999889867803367126758 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCC-CCCCC Q ss_conf 99999999999987777787640043101100111002221023575211--2322100004676652444576-65321 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE--ETIEAKNIVIATGSEASGLPGM-SIDFD 157 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~--~~i~ad~iviATGs~p~~iP~~-~~~~~ 157 (466) +++++||+.++++++.+++.+++++||++++|+|+|.++++|.|++.... ++++++++||||||+|+.||+. +.+.+ T Consensus 80 ~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~ 159 (481) T TIGR01350 80 EKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDED 159 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCC T ss_conf 99999988987542467898863068059999999985858998356553114787403799338603435777865767 Q ss_pred CE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC Q ss_conf 00--2453057411111133321012344543320132201220111000011122122221122222222222-22322 Q gi|254781053|r 158 EQ--VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG-MNFQL 234 (466) Q Consensus 158 ~~--~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~g-V~i~~ 234 (466) .+ .++||+++|+|++.|+|++|||||+||+|||++|++||++||+||..||+||.+|+|+++.+++.|+++| |+|++ T Consensus 160 ~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~ 239 (481) T TIGR01350 160 GKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILT 239 (481) T ss_pred CCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 78878983268743224885669987866778899999853980899945750035431689999999997449849854 Q ss_pred CHHHH--HHHCCCCCCEEEEEEECC-CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE Q ss_conf 00234--420146872169997213-321100000232045312103678400001267642233377633302684870 Q gi|254781053|r 235 NSKVS--SVKKVKGKAQVVYRSTDD-EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI 311 (466) Q Consensus 235 ~~~v~--~i~~~~~~~~v~~~~~~g-~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~ 311 (466) |++|+ .++..++.+.+.+...++ +..++++|.||+|+||+||+++|||+++||++|+||.|+||++||||+|||||+ T Consensus 240 ~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAI 319 (481) T TIGR01350 240 NAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAI 319 (481) T ss_pred CCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEE T ss_conf 85442335775287899999987998058898739999842434767646021211887898188798325168966688 Q ss_pred CCCCCCCCCCCEECCCCCCEEECCCCCCC------CCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCC Q ss_conf 24333543443000123201201112222------222333322100014455100147888623466589999604470 Q gi|254781053|r 312 GDVVRGPMLAHKAEDEGIAVAEIISGQKG------HVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANG 385 (466) Q Consensus 312 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~------~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ 385 (466) |||++++||||+|.+||++||++|+|+.. ++||..||++|||+||+|+|||||+|||++|++|++++|||+.++ T Consensus 320 GDv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnG 399 (481) T TIGR01350 320 GDVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANG 399 (481) T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCC T ss_conf 73478702689999878999999818761100001255357887784687366303887999855985899970101042 Q ss_pred HHHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 3441889-833899999789986999999829988999999999987898789963784377889999999998608977 Q gi|254781053|r 386 RARSMNS-IDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPI 464 (466) Q Consensus 386 ra~~~~~-~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~ 464 (466) ||.++++ ++||+|+|+|+++++|||+||+||+|+|||+.+++||.+++|++||.+++|+|||+||+++|||++++++|| T Consensus 400 kA~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a~g~~i 479 (481) T TIGR01350 400 KALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAALGKPI 479 (481) T ss_pred HHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC T ss_conf 12000567876189999647781888998842443268899998774898899998527898888999999999818856 Q ss_pred CC Q ss_conf 49 Q gi|254781053|r 465 HM 466 (466) Q Consensus 465 ~~ 466 (466) || T Consensus 480 H~ 481 (481) T TIGR01350 480 HM 481 (481) T ss_pred CC T ss_conf 79 No 2 >PRK06115 dihydrolipoamide dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=870.85 Aligned_cols=462 Identities=51% Similarity=0.821 Sum_probs=432.4 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCC Q ss_conf 93-3199998986689999999987993999937997150251366737098999999999999-866755816477532 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIA-KEAGDLGINIASCHL 78 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~~g~~~~~~~~ 78 (466) || |||+|||+||||++||++|+++|+||+|||+.+.+||||+|+||||||+|+++++.+.... ..+..+|++. .+.+ T Consensus 1 M~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPsK~Ll~~a~~~~~~~~~~~~~~g~~~-~~~~ 79 (466) T PRK06115 1 MKSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTL 79 (466) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-CCCC T ss_conf 984698999978899999999997899399996799964652045756699999999999986344020387573-4625 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 89999999999999877777876400431011001110022210235752-11232210000467665244457665321 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) ||++++++++..++.+.++++.+++..+|++++|+|+|.+++++.|...+ ++++++++++||||||+|+.+|+.+ .+ T Consensus 80 d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iiIATGs~P~~~pg~~--~d 157 (466) T PRK06115 80 NLAQMMKQKDESVTALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVT--ID 157 (466) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC--CC T ss_conf 8999999999999999999999986189479952599954994189858997799995689999899876999756--59 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 00245305741111113332101234454332013220122011100001112212222112222222222222322002 Q gi|254781053|r 158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237 (466) Q Consensus 158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~ 237 (466) +..++||+++++++++|++++|||||+||+|||++|++||++||++++++++||.+|+++++.+++.|+++||+++++++ T Consensus 158 ~~~~~ts~~~~~l~~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~lL~~~D~~~~~~l~~~l~~~gi~i~~~~~ 237 (466) T PRK06115 158 NQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDGETAKTLQKALAKQGMRFKLGSK 237 (466) T ss_pred CCEEECCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCE T ss_conf 95697152400354489679999585899999999986198478998334214343412368888899876949995898 Q ss_pred HHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC Q ss_conf 344201468721699972-1332110000023204531210367840000126764223337763330268487024333 Q gi|254781053|r 238 VSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR 316 (466) Q Consensus 238 v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g 316 (466) +++++..+++..+.+... +++.+++++|.||+|+||+||++.|+|+++|++++++| |.||+++|||+|||||+|||++ T Consensus 238 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gv~~~~~g-i~vd~~~~Ts~~~IyA~GDv~g 316 (466) T PRK06115 238 VTQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQGLGLESVGLETDKRG-MLANEHHRTSVPGVWVIGDVTS 316 (466) T ss_pred EEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEECCCC T ss_conf 999998499699999975588504897169999416765776567200287217997-7837765447887798423789 Q ss_pred CCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEE Q ss_conf 54344300012320120111222222233332210001445510014788862346658999960447034418898338 Q gi|254781053|r 317 GPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGF 396 (466) Q Consensus 317 ~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~ 396 (466) .|+|+|+|.+||+++++++++++.++||+.+|++|||+||+|+||+||+||++++++|++.+++|+.++|++.+++++|| T Consensus 317 ~~~l~h~A~~eg~~~~~~i~g~~~~~~~~~vP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~ 396 (466) T PRK06115 317 GPMLAHKAEDEAVACIERIAGKAHEVNYNLIPGVIYTRPEVASVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGF 396 (466) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEE T ss_conf 86770589999999999975999765668788899756867988898999987699889999987767456546998379 Q ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 9999978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 397 VKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 397 ~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) +||++|++|++|||+|++|++|+||||.+++||++++|++||.+++|+|||++|++++||+++++|+||. T Consensus 397 vKlv~d~~~g~ILGa~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~i~~aa~~~~g~~~h~ 466 (466) T PRK06115 397 AKVLADARTDEVLGVHLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVDGMAMQI 466 (466) T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 9999999979799999989999999999999998879799995267789877999999998545986659 No 3 >PRK06416 dihydrolipoamide dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=868.40 Aligned_cols=460 Identities=47% Similarity=0.755 Sum_probs=436.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH Q ss_conf 93319999898668999999998799399993799715025136673709899999999999986675581647753289 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL 80 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~ 80 (466) |-|||+|||+||||++||.+++++|++|+|||++. +||||+|+||||||+|+++++.++.. +....+|+......+|| T Consensus 3 ~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~-~~~~~~Gi~~~~~~~d~ 80 (462) T PRK06416 3 FDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERYREA-RHSEDFGIKAENVGFDF 80 (462) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCEEEECCHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCH T ss_conf 77998999988899999999996899399996799-78620416705069999999999999-87762681267764089 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE Q ss_conf 99999999999987777787640043101100111002221023575211232210000467665244457665321002 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466) ++++++++.+++++.++++..+++.+|++++|+|+|++++++.|...+++++|+++++||||||+|+.+|+.+ .++.. T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~a~~iIIATGs~P~~~pg~~--~~~~~ 158 (462) T PRK06416 81 KKVQEWKNGVVARLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVKGEDGEQTYTAKNIILATGSRPRELPGIE--FDGKR 158 (462) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCEEEEECEEEECCCCCCCCCCCCC--CCCCE T ss_conf 9999999999999878899999877978998389981276045553699669994869999899887799978--78955 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 45305741111113332101234454332013220122011100001112212222112222222222222322002344 Q gi|254781053|r 161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) ++||+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|++.||++++++++++ T Consensus 159 v~ts~~~~~l~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gi~i~~~~~v~~ 238 (462) T PRK06416 159 VITSDEALNLDEVPKSLVVIGGGYIGIEFASAYASLGAEVTIIEALPRILPGFDKEISKLAERALKKRGIKIVTGAMAKK 238 (462) T ss_pred EEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEE T ss_conf 98416645765479769998897878899999997397689974054323345746668999999964985144846999 Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC Q ss_conf 20146872169997213321100000232045312103678400001267642233377633302684870243335434 Q gi|254781053|r 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML 320 (466) Q Consensus 241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l 320 (466) ++..+++..+.+.+ +++..++++|.||+|+||+||++.|+|+++|++++ +|+|.||++||||+|||||+|||+++|+| T Consensus 239 i~~~~~~~~v~~~~-~~~~~~i~~d~vl~a~Gr~Pn~~~L~L~~~gv~~d-~G~I~vd~~~~Ts~~~IyA~GDv~g~~~l 316 (462) T PRK06416 239 VEQTDDGVTVTLEA-GGEEETIEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIPVDEQMRTNVPNIYAIGDVVGGPML 316 (462) T ss_pred EEECCCEEEEEEEC-CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCEEEECCCCCCCCC T ss_conf 99729989999953-98589996329999966401644347430255525-79700566632599745871466788776 Q ss_pred CCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEE Q ss_conf 43000123201201112222222333322100014455100147888623466589999604470344188983389999 Q gi|254781053|r 321 AHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKIL 400 (466) Q Consensus 321 ~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli 400 (466) +|+|.+||+++++|+++++.++||..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++++++++||+|++ T Consensus 317 ~~~A~~eg~~a~~ni~g~~~~~~~~~iP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv 396 (462) T PRK06416 317 AHKASAEGKIAAEAIAGHPHPVDYRSIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVRFPFAGNGKALALGETDGFVKLI 396 (462) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEE T ss_conf 58999999999998759995444445712002576369875889999975997799999888673566569985799999 Q ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 401 ANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 401 ~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) +|++|++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|+|++||+++.+||+|- T Consensus 397 ~d~~~~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~g~~~h~ 462 (462) T PRK06416 397 FDKKTGELLGAHMVGAEASELIQEAQLAINLEATVEDLALTIHPHPTLSEALMEAALAAAGRPLHA 462 (462) T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 999989799999988999999999999998849899994178779888999999999864998889 No 4 >PRK13748 putative mercuric reductase; Provisional Probab=100.00 E-value=0 Score=865.95 Aligned_cols=452 Identities=29% Similarity=0.467 Sum_probs=413.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) |||+|||+||||++||++|+++|+||+|||++ .+||||+|+||||||+|++++++.+...+....+|+....+.+||.+ T Consensus 99 yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~-~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~~~~Gi~~~~~~vd~~~ 177 (561) T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATAPTIDRSK 177 (561) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHH T ss_conf 76899895889999999999789979999479-96886656760448999999999999974501477116775467999 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 99999999998777-77876400-431011001110022210235752-1123221000046766524445766532100 Q gi|254781053|r 83 MMSYKKSIVESNTQ-GINFLLKK-NKIITYHGSARIVSNNKILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 83 ~~~~~~~~v~~~~~-~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) ++++++..++.++. .++.+++. .+|++++|+|+|+++++|.|...+ ++++++++++||||||+|+.+|.. ..++. T Consensus 178 ~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~P~ip--Gl~~~ 255 (561) T PRK13748 178 LLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIP--GLKET 255 (561) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCC--CCCCC T ss_conf 9999999999987446889974379849998499995398899993589648994186999478876678888--76778 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24530574111111333210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) .++||+++|+++++|+|++|||||+||+|||++|++||++||+++|+ ++|+.+|+++++.+.+.|+++||+++++++++ T Consensus 256 ~~lTSd~~l~l~~lP~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r~-~ll~~~D~ei~~~l~~~l~~~GI~i~~~~~v~ 334 (561) T PRK13748 256 PYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS 334 (561) T ss_pred CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHCCCEEECCCEEE T ss_conf 62774564074438873899898689999999998649848999657-65676499999999999997697997697899 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) +++..+++..+. ..++ ++++|.||+|+||+||+++|+||++||++|++|+|.||++||||+|||||+|||++.|+ T Consensus 335 ~v~~~~~~~~v~--~~~g---~i~~d~vLvA~GR~PNt~~LgLe~~GV~~d~~G~I~Vd~~~rTs~p~IYA~GDv~g~~~ 409 (561) T PRK13748 335 QVAHDDGEFVLT--TNHG---ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ 409 (561) T ss_pred EEEECCCEEEEE--ECCC---EEEECEEEEECCCEEECCCCCHHHCCCEECCCCCEECCCCCCCCCCCEEEEECCCCCCC T ss_conf 999729989999--6896---69857899960610345442515428714689987248874307862999610167875 Q ss_pred CCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE Q ss_conf 44300012320120111222222233332210001445510014788862346658999960447034418898338999 Q gi|254781053|r 320 LAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI 399 (466) Q Consensus 320 l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl 399 (466) |+|+|.+||+++++|+++.+.++||..+|+++||+||+|+|||||+||+++|+++++.+++|+.++|++++++++||+|+ T Consensus 410 Lah~A~~eG~~aa~ni~g~~~~~d~~~vP~vvFT~PeiA~VGlTE~eA~~~g~~~~~~~~~~~~~~rA~~~~~~~GfvKl 489 (561) T PRK13748 410 FVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKL 489 (561) T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEE T ss_conf 56899999999999861999545478677499813750778888999987599558999956768268766898579999 Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 99789986999999829988999999999987898789963784377889999999998608977 Q gi|254781053|r 400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPI 464 (466) Q Consensus 400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~ 464 (466) ++|+++++|||+|++|++|+||||.+++||++++|++||.+++|+|||++|+|++||. .|.|++ T Consensus 490 v~d~~tg~ILGahivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~hPT~sE~lk~AAq-~f~kdv 553 (561) T PRK13748 490 VAEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ-TFNKDV 553 (561) T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH-HHCCCC T ss_conf 9999989599999987998999999999998789899993288779887999999999-860682 No 5 >PRK06467 dihydrolipoamide dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=857.17 Aligned_cols=462 Identities=39% Similarity=0.611 Sum_probs=438.5 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 93--3199998986689999999987993999937997150251366737098999999999999866755816477532 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |. ||||||||||||++||.+++++|++|+|||+.+.+||||+|+||||||+|+++++.+... +.+..+|+....+.+ T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~-~~~~~~Gi~~~~~~~ 79 (472) T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKI 79 (472) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCC T ss_conf 9977878999988899999999997899699996379976561235803229999999999998-676745772588742 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 8999999999999987777787640043101100111002221023575211-232210000467665244457665321 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) ||++++++++.+++.+.+++..+++..+|++++|+++|++++++.|.+.++. ++++++++||||||+|..+|..+ .+ T Consensus 80 d~~~~~~~~~~~v~~l~~~~~~~~~~~gV~~i~G~a~f~~~~~v~v~~~~g~~~~l~a~~ivIATGs~p~~~p~~~--~~ 157 (472) T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTVEVTGEDGKTEVIEFDNAIIAAGSRPIQLPFIP--HE 157 (472) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC--CC T ss_conf 7999999999999999889999998779569715067548980364338886489987799994699665689988--78 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 00245305741111113332101234454332013220122011100001112212222112222222222222322002 Q gi|254781053|r 158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237 (466) Q Consensus 158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~ 237 (466) +..+++|+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|+++ +++++++. T Consensus 158 ~~~~~ts~~~l~l~~~P~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~~~~~l~~~-i~i~~~~~ 236 (472) T PRK06467 158 DPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRISKQ-FNIMLETK 236 (472) T ss_pred CCEEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEECCE T ss_conf 87588236651101399559999564728999999985298689996045545434999999999999857-80996447 Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC Q ss_conf 34420146872169997213321100000232045312103678400001267642233377633302684870243335 Q gi|254781053|r 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG 317 (466) Q Consensus 238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~ 317 (466) +++++..+++..+.+...++...++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||++. T Consensus 237 v~~~~~~~~~~~v~~~~~~~~~~~~~~D~vlva~Gr~Pn~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~ 316 (472) T PRK06467 237 VTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQ 316 (472) T ss_pred EEEEEEECCEEEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC T ss_conf 99999939969999980898706998368999078610123457755687317999872499753588635861124688 Q ss_pred CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE Q ss_conf 43443000123201201112222222333322100014455100147888623466589999604470344188983389 Q gi|254781053|r 318 PMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV 397 (466) Q Consensus 318 ~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~ 397 (466) ++|+|+|.+||+++++++++++.++||..+|+++||+||+|+||+||+||+++|++|++.+++|+.++|++..++++||+ T Consensus 317 ~~lah~A~~qg~~aa~~i~g~~~~~~~~~vP~~vft~Peia~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~ 396 (472) T PRK06467 317 PMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMT 396 (472) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEE T ss_conf 77667999999999998669996556665415998155358863889999876998899999787560454379985799 Q ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 999978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) ||++|++|++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||++++||+.+.++++|+ T Consensus 397 Kli~~~~~~~iLGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~i~~Aa~~~~g~~~~~ 465 (472) T PRK06467 397 KLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAVEGSITDL 465 (472) T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 999999989799999988999999999999998869899994078779888999999999866994337 No 6 >TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion. Probab=100.00 E-value=0 Score=861.63 Aligned_cols=462 Identities=34% Similarity=0.545 Sum_probs=429.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 31999989866899999999879---939999379971502513667370989999999999998667558164775328 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) ||++|||+|.|+++||+++++.| .||+|||++. +||||+|+||||||.|+++++..+...+...++|+....+.+| T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~-~GGTCVNVGCVPSK~llraa~~~~~a~~~~~f~g~~~~~~~v~ 79 (494) T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGP-LGGTCVNVGCVPSKILLRAAEVAHYARKPPFFVGLLAATVEVD 79 (494) T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 918998276899999999985488715999963789-7761585232745899999988767634777777535434423 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHCC-CEEEEEEEEEECCCCCCCCCCCCCCCCCCCEE-ECCCCCCCC--CCCCCCCC Q ss_conf 99999999999998777-778764004-31011001110022210235752112322100-004676652--44457665 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQ-GINFLLKKN-KIITYHGSARIVSNNKILVKGSSSEETIEAKN-IVIATGSEA--SGLPGMSI 154 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~-~~~~~~~~~-~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~-iviATGs~p--~~iP~~~~ 154 (466) +.+++++++++++.+++ -|..+++.. +|++++|+|+|.|+++|+|+..+|.+.+.+++ +||||||+| |+|||+.. T Consensus 80 ~~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~F~d~~~V~v~~~~GG~~~~~~k~~lIATGa~P~~P~IPGLke 159 (494) T TIGR02053 80 FEELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRARFKDPKTVKVDLAEGGREVVGAKRFLIATGARPAVPPIPGLKE 159 (494) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCC T ss_conf 89999998899999877678999851798679986799847878997278885004213866896467788744678004 Q ss_pred CCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCC Q ss_conf 32100245305741111113--33210123445433201322012201110000111221222211222222222-2222 Q gi|254781053|r 155 DFDEQVIVSSTGALSFSSVP--KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMN 231 (466) Q Consensus 155 ~~~~~~~~t~~~~~~l~~~P--~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~ 231 (466) ......+|||+++|.+++.| +||+|||||+||+|+||+|+|||++|+|++|++++|+++||++++.+++.|++ +||+ T Consensus 160 ~~~~G~ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~~V~~~l~~eeGi~ 239 (494) T TIGR02053 160 ADKAGRYLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISAAVEEALAEEEGIE 239 (494) T ss_pred HHHCCCEECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE T ss_conf 53368432137772568799704688886528999999999857761403679986446468889999999841478779 Q ss_pred CCCCH-HHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCC-CEEEECCCCCCCCCCCCCCCEEECCCCE Q ss_conf 32200-234420146872169997213321100000232045312103678-4000012676422333776333026848 Q gi|254781053|r 232 FQLNS-KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLG-LEEIGINIDHRGCIEIGGQFQTSISTIY 309 (466) Q Consensus 232 i~~~~-~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~-Le~~gi~~~~~G~I~vd~~~~Ts~p~Iy 309 (466) +++.+ ++++++..+++......++++...++++|.+|+||||+||+++|| |+++|+++|++|.|.||++||||+|+|| T Consensus 240 ~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~gL~GLe~~GVk~~~~G~I~Vde~lrTsnp~iY 319 (494) T TIGR02053 240 VVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPNTDGLNGLEKAGVKLDERGGILVDERLRTSNPGIY 319 (494) T ss_pred EEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCEE T ss_conf 98044035544452798189998558987457431125552787566667742345834668854787262035877724 Q ss_pred EECCCCCC-CC----CCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECC Q ss_conf 70243335-43----443000123201201112-2222223333221000144551001478886234665899996044 Q gi|254781053|r 310 AIGDVVRG-PM----LAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSA 383 (466) Q Consensus 310 A~GDv~g~-~~----l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~ 383 (466) |+|||+++ |+ |.++|.+||.+||.|+++ ...++||..+|.+|||+|++|+|||||+||++.|+.+++-..++++ T Consensus 320 AAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT~P~~AsVGLtE~ea~~~G~~~~~R~~~~~~ 399 (494) T TIGR02053 320 AAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFTDPAVASVGLTEAEAQKAGIEVDSRTLPLEA 399 (494) T ss_pred EEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEECCCCEEECCCCHHHHHHCCCCEEEEEEEHHH T ss_conf 62022378746523577787505804520101798815540218836976887121357589898559704566653403 Q ss_pred CCHHHHCCCCCEEEEEEEECCCCEE-------EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 7034418898338999997899869-------999998299889999999999878987899637843778899999999 Q gi|254781053|r 384 NGRARSMNSIDGFVKILANEKSDRV-------EGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456 (466) Q Consensus 384 ~~ra~~~~~~~g~~kli~~~~~~~i-------lG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa 456 (466) .||++++++++||+||++|+.|+|| ||+|+|+|+|+|+||..++||+.||||+||.+++|+|||++|+|+.|| T Consensus 400 VPra~~~r~t~G~iKlva~~~T~K~svkrGkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt~h~fpT~~EgLKLAA 479 (494) T TIGR02053 400 VPRARINRETRGFIKLVADPGTGKVSVKRGKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDTLHPFPTMAEGLKLAA 479 (494) T ss_pred HHHHHHCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHH T ss_conf 68898578996148999737873587641427787752311788999999999807837788731154566789999998 Q ss_pred HHHCCCCCCC Q ss_conf 9860897749 Q gi|254781053|r 457 LSCFDQPIHM 466 (466) Q Consensus 457 ~~~~~~~~~~ 466 (466) + .|.|+|.+ T Consensus 480 l-~F~~Dv~k 488 (494) T TIGR02053 480 L-TFYRDVSK 488 (494) T ss_pred H-HHCCCCCC T ss_conf 5-22046111 No 7 >PRK06327 dihydrolipoamide dehydrogenase; Validated Probab=100.00 E-value=0 Score=849.47 Aligned_cols=462 Identities=52% Similarity=0.853 Sum_probs=438.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC------CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC Q ss_conf 33199998986689999999987993999937------997150251366737098999999999999866755816477 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK------EKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIAS 75 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~------~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~ 75 (466) +|||+||||||||++||++|+++|++|+|||+ .+.+||||+|+||||||+|+++++.+....+.+..+|++... T Consensus 4 ~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPsK~L~~~a~~~~~~~~~~~~~Gi~~~~ 83 (475) T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGISVDG 83 (475) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC T ss_conf 18899999888999999999978991999972577677888801447277013099999999999998789865841467 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC Q ss_conf 53289999999999999877777876400431011001110022----21023575211232210000467665244457 Q gi|254781053|r 76 CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSN----NKILVKGSSSEETIEAKNIVIATGSEASGLPG 151 (466) Q Consensus 76 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~----~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~ 151 (466) +.+||++++++++.+++.++++++..++.++|++++|+|+|+++ +++.+.+.+ .++++++++||||||+|+.+|+ T Consensus 84 ~~~d~~~~~~~k~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~~~~~v~v~~~~-~~~i~a~~iiIATGs~p~~lp~ 162 (475) T PRK06327 84 VKIDVAKMIGRKDTVVKQMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVKGEG-ETVVKAKNVIIATGSEPRHLPG 162 (475) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCC-CCEEEECEEEECCCCCCCCCCC T ss_conf 630799999999999999888999998716938999999996147884599983898-5099968799978996666998 Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 66532100245305741111113332101234454332013220122011100001112212222112222222222222 Q gi|254781053|r 152 MSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN 231 (466) Q Consensus 152 ~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~ 231 (466) ++ +++..++|++++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|++.||+ T Consensus 163 ~~--~~~~~~~ts~~~~~l~~~Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~ 240 (475) T PRK06327 163 VP--FDNEIILDNEGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEALKAFTKQGLD 240 (475) T ss_pred CC--CCCCEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 88--7874387367651613389679999674758999999995498599998536433445878899999988736929 Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE Q ss_conf 32200234420146872169997213321100000232045312103678400001267642233377633302684870 Q gi|254781053|r 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI 311 (466) Q Consensus 232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~ 311 (466) +++++++++++..+++..+.+.+.+++..++++|.||+++||+||++.|+|+++||++|++|+|.||++||||+|||||+ T Consensus 241 i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~L~l~~~Gv~l~~~G~I~vd~~~~Ts~p~IyA~ 320 (475) T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAI 320 (475) T ss_pred EEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC T ss_conf 97088999999548739999993899879999819999326361454558621387447899865699754699753871 Q ss_pred CCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCC Q ss_conf 24333543443000123201201112222222333322100014455100147888623466589999604470344188 Q gi|254781053|r 312 GDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMN 391 (466) Q Consensus 312 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~ 391 (466) |||+++|+|+|+|.+||+++++|+++++.++||..+|++|||+||+|+||+||+||+++|++|++.+++|+.++|++..+ T Consensus 321 GDv~g~~~l~~~A~~eg~~a~~~~~g~~~~~~~~~vP~~vft~Peia~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~ 400 (475) T PRK06327 321 GDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMG 400 (475) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCC T ss_conf 01478877755999999999998669997665676614884377678665889999876998899999777662430158 Q ss_pred CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 983389999978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 392 SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 392 ~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) +++||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|++++||+++.+||||. T Consensus 401 ~~~G~~klv~~~~~~~IlG~~~vg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPT~~E~~~~Aa~~~~~~~~~~ 475 (475) T PRK06327 401 EPDGFVKVIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRALHF 475 (475) T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 984899999999989799999989999999999999998889899994077779888999999999755998889 No 8 >PRK07818 dihydrolipoamide dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=849.44 Aligned_cols=461 Identities=37% Similarity=0.602 Sum_probs=431.6 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 93--3199998986689999999987993999937997150251366737098999999999999866755816477532 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |+ |||+||||||||++||++|+++|+||+|||++ .+||||+|+||||||+|++.+++.+.+.+....+|+. .+..+ T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~gi~-~~~~~ 78 (467) T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTF 78 (467) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC T ss_conf 985687899997889999999999789909999489-9687506176011399999999999999788867977-42416 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 8999999999999987777787640043101100111002221023575-211232210000467665244457665321 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGS-SSEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~-~~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) ||..++++++.+++....+++..+++.+|++++|+|+|++++++.|... ++.++++++++||||||+|+.+|+.+. T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~~i~a~~iiIATGs~p~~lPg~~~--- 155 (467) T PRK07818 79 DYGAAFDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSL--- 155 (467) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC--- T ss_conf 89999999999999987569999986793999430798248513897178962799952689876887665788678--- Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 00245305741111113332101234454332013220122011100001112212222112222222222222322002 Q gi|254781053|r 158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237 (466) Q Consensus 158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~ 237 (466) ...++++++.+.++++|+|++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|++.||+++++++ T Consensus 156 ~~~~~~~~~~~~~~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l~~~Gi~i~~~~~ 235 (467) T PRK07818 156 SENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQYKKLGVKILTGTK 235 (467) T ss_pred CCCEEEEHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCE T ss_conf 88778535772334589669999987999999999983298777762113135442267899999999866988855976 Q ss_pred HHHHHCCCCCCEEEEEEEC-CCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC Q ss_conf 3442014687216999721-332110000023204531210367840000126764223337763330268487024333 Q gi|254781053|r 238 VSSVKKVKGKAQVVYRSTD-DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR 316 (466) Q Consensus 238 v~~i~~~~~~~~v~~~~~~-g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g 316 (466) +++++..+++..+++...+ ++.+++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||+| T Consensus 236 v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~~L~L~~~gv~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g 315 (467) T PRK07818 236 VESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVEGYGLEKTGVALTDRGAIGIDDYMRTNVPHIYAIGDVTA 315 (467) T ss_pred EEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCEEEEEECCCC T ss_conf 89999849939999998889946999952589811675044434641355478799858689988647873999722688 Q ss_pred CCCCCCEECCCCCCEEECCCCCCCC--CCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCC Q ss_conf 5434430001232012011122222--22333322100014455100147888623466589999604470344188983 Q gi|254781053|r 317 GPMLAHKAEDEGIAVAEIISGQKGH--VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSID 394 (466) Q Consensus 317 ~~~l~~~A~~~g~~aa~~i~~~~~~--~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~ 394 (466) +++|+|+|.+||+++++|+++.+.. .||+.+|+++||+||+|+||+||+||+++|+++++.+++|+.++|++..++++ T Consensus 316 ~~~Lah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~~~~~~~~~~~~~~ra~~~~~~~ 395 (467) T PRK07818 316 KLQLAHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPS 395 (467) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCC T ss_conf 87871489999999999865999863345566654997578769973899999864998899998567477777568985 Q ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 389999978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 395 GFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 395 g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) ||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|++++||+++.+++||. T Consensus 396 G~vKlv~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A~~~~~g~~~~~ 467 (467) T PRK07818 396 GFVKLVADAKYGELLGGHLVGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALQEAFHGLAGHMINF 467 (467) T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 799999999989699999988999999999999998839899994067789887999999999751788789 No 9 >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] Probab=100.00 E-value=0 Score=850.05 Aligned_cols=451 Identities=48% Similarity=0.758 Sum_probs=421.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH Q ss_conf 93319999898668999999998799399993799715025136673709899999999999986675581647753289 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL 80 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~ 80 (466) |+||+||||+||||+.||.+|+++|++|++||+.+.+||||+|+||||||+|+++++.+..+.+....+|++.....+|| T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~d~ 82 (454) T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCH T ss_conf 51548998977779999999996799779993069867655746731449999999999998641423652057785389 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE Q ss_conf 99999999999987777787640043101100111002221023575211232210000467665244457665321002 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466) ++++++++.+++.+..+++.+++.++|++++|+|+|+++++|.|.+. +.++++++++||||||+|+.+|... .++.. T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~~~~~a~~iiIATGS~p~~~~~~~--~~~~~ 159 (454) T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DKETITADNIIIATGSRPRIPPGPG--IDGAR 159 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECC-CCEEEEECEEEEECCCCCCCCCCCC--CCCCE T ss_conf 99999999999987677999997489889998999888998999068-7549982789990699877899889--88874 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 45305741111113332101234454332013220122011100001112212222112222222222222322002344 Q gi|254781053|r 161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) +++|++++.+.++|+|++|||||+||+|||++|++||++||++++++++||.+|+++++.+.+.|++.|+++++++++++ T Consensus 160 ~~~s~~~l~~~~lP~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~ 239 (454) T COG1249 160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239 (454) T ss_pred EEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEE T ss_conf 88353413601079879998988899999999998699789994688778877999999999999858959983536999 Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC Q ss_conf 20146872169997213321100000232045312103678400001267642233377633302684870243335434 Q gi|254781053|r 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML 320 (466) Q Consensus 241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l 320 (466) ++..++++.+.+.+ ++..++++|.+|+|+||+||+++|+||++|++++++|+|.||+++|||+|||||+|||+++++| T Consensus 240 ~~~~~~~v~v~~~~--g~~~~~~ad~vL~AiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~L 317 (454) T COG1249 240 VEKKDDGVLVTLED--GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPML 317 (454) T ss_pred EEECCCEEEEEEEC--CCCCEEEEEEEEEEECCCCCCCCCCCHHCCCEECCCCCEEECCCCCCCCCCEEEEEECCCCCCC T ss_conf 98169808999946--9776799849999327866888878053291467999887689504389998984515899775 Q ss_pred CCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE Q ss_conf 43000123201201112-22222233332210001445510014788862346658999960447034418898338999 Q gi|254781053|r 321 AHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI 399 (466) Q Consensus 321 ~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl 399 (466) +|+|.+||++|++|+++ +..++||..+|+++||+||+|+||+||+||+++++++++++++|+.++|+..+++++||+|+ T Consensus 318 ah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Kl 397 (454) T COG1249 318 AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKL 397 (454) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEE T ss_conf 67899989999999707997767746799699677975996089999986389759999435763377764687727999 Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 997899869999998299889999999999878987899637843778899999999 Q gi|254781053|r 400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA 456 (466) Q Consensus 400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa 456 (466) ++|+++++|||+|++|++|+||||.+++||++++|++++.+++|+|||++|.+++|+ T Consensus 398 v~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454) T COG1249 398 VVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454) T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC T ss_conf 997899919999998999899999999999879918998357767998469899659 No 10 >PRK05976 dihydrolipoamide dehydrogenase; Validated Probab=100.00 E-value=0 Score=845.69 Aligned_cols=457 Identities=42% Similarity=0.687 Sum_probs=427.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH--HHHCCEECCCCCCCH Q ss_conf 319999898668999999998799399993799715025136673709899999999999986--675581647753289 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKE--AGDLGINIASCHLDL 80 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~--~~~~g~~~~~~~~d~ 80 (466) |||+|||+||||++||++|+++|++|+|||++. +||||+|+||||||+|++.++.+....+. ...+|+....+.+|| T Consensus 5 YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~~~gi~~~~~~~d~ 83 (464) T PRK05976 5 YDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALIHSAEVFHTAKKFAGASPLGISVQAPALDF 83 (464) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCH T ss_conf 889999978899999999997899299997899-7971363683147999999999999865211100535456765389 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 9999999999998777778764004310110011100222102357521-123221000046766524445766532100 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) .+++++++.+++++...++.+++..+|++++|+++|++++++.|...++ .++++++++||||||+|+.+|+.+. ++ T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~--~~- 160 (464) T PRK05976 84 AKVQAWKDGIVDRLTKGVAALLKKGKVDVFHGIGRILDGKTVSVETATGENEMIIPENLLIATGSRPVELPGLPF--GG- 160 (464) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECEEEECCCCCCCCCCCCCC--CC- T ss_conf 999999999999987889999986892899726886589811444278873699826699876888616997657--76- Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24530574111111333210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) .++||+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|+++||+++++++++ T Consensus 161 ~~~ts~~~~~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~~l~~~gi~i~~~~~v~ 240 (464) T PRK05976 161 EVISSTEALSLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVARLLKKLGVRVLTGAKVL 240 (464) T ss_pred CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE T ss_conf 67820463173548955999899689999999999539869999853655433388899999999997697998088899 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) +++..++...+ ...+|+..++++|.||+|+||+||++.|+|+++|++++ +|+|.||++||||+|||||+|||+|.|+ T Consensus 241 ~~~~~~~~~~~--~~~~g~~~~i~~D~vl~a~Gr~Pn~~~l~l~~~gv~~~-~g~I~Vd~~~~Ts~~~IyA~GDv~g~~~ 317 (464) T PRK05976 241 GLTLDGGVLIV--AEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDLDVE-GGFIRIDDFCQTSMRHIYAIGDVIGEPM 317 (464) T ss_pred EEEECCCEEEE--EECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCEEEC-CCCEECCCCCCCCCCEEEEEECCCCCCC T ss_conf 99943998999--98289779998368999148755635577322776621-7836246765358871999605689877 Q ss_pred CCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE Q ss_conf 44300012320120111222222233332210001445510014788862346658999960447034418898338999 Q gi|254781053|r 320 LAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI 399 (466) Q Consensus 320 l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl 399 (466) |+|+|.+||+++++|+++.+.++++..+|+++||+||+|+||+||+||++++++|++.+++|++++|++..++++||+|| T Consensus 318 l~~~A~~~g~~a~~~~~g~~~~~~~~~ip~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~iKl 397 (464) T PRK05976 318 LAHRAMAQGEMVAEHIAGKKREPIDYAIVAVCFTDPEVVSVGLTPDEAKEAGYDVKVGKFPFAANGRALTYGESDGFVRV 397 (464) T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEE T ss_conf 73289999999999865999743345566030237536886488999987699889999976767111015898389999 Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 9978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) ++|+++++|||+|++|++|+||||.+++||++++|+++|++++|+|||++|++++||++++++++|. T Consensus 398 i~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~~~~~~~h~ 464 (464) T PRK05976 398 VARRDTHDILGVQAVGPHVSELISEFALALEMGARLEDVAGTIHAHPTLSEAVGEAALAALGHALHI 464 (464) T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 9999989899999989999999999999998799899992177779878999999999855998779 No 11 >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional Probab=100.00 E-value=0 Score=845.92 Aligned_cols=456 Identities=32% Similarity=0.485 Sum_probs=421.8 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 93-31999989866899999999879939999379971502513667370989999999999998667558164775328 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) |+ |||+||||||||++||.+|+++|+||+|||+.+.+||+|+|+||||||+|++++..+....+ ...++.......+| T Consensus 4 m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~-~~~~~~~~~~~~~~ 82 (465) T PRK05249 4 MYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQ-NPLYRDYRVKLRIT 82 (465) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC T ss_conf 77789899997789999999999789929999769997665344461767999999999999875-54246556668628 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999999998777778764004310110011100222102357521-12322100004676652444576653210 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLPGMSIDFDE 158 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP~~~~~~~~ 158 (466) |++++++++.++++..+.++..+++++|++++|.|+|++++++.|...++ .++++++++||||||+|+.+|+. ++++ T Consensus 83 ~~~~~~~~~~~v~~~~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~dg~~~~i~a~~iIIATGs~p~~p~~~--~~~~ 160 (465) T PRK05249 83 FADLLARADRVINKQVEVRRGFYARNRVEVIQGRASFVDPHTVEVECPDGSVETLTAEKIVIATGSRPYRPDDV--DFDH 160 (465) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCC--CCCC T ss_conf 99999999999988878999999868978998478972798404434899628998427999537524567878--9898 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 02453057411111133321012344543320132201220111000011122122221122222222222223220023 Q gi|254781053|r 159 QVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238 (466) Q Consensus 159 ~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v 238 (466) ..+++|+++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+.+.|+++||++++++++ T Consensus 161 ~~v~~sd~~l~l~~~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ll~~~d~~~~~~l~~~l~~~gI~i~~~~~v 240 (465) T PRK05249 161 PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRLLSFLDDEISDALSYHFRNSGVVIRHNEEY 240 (465) T ss_pred CEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEECCEE T ss_conf 72883678543300797599999982179999999960987789721660002218999999999999879299979889 Q ss_pred HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC Q ss_conf 44201468721699972133211000002320453121036784000012676422333776333026848702433354 Q gi|254781053|r 239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP 318 (466) Q Consensus 239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~ 318 (466) ++++..+++..+.+. +| .++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|+| T Consensus 241 ~~i~~~~~~~~v~~~--~g--~~i~~D~Vl~a~Gr~pn~~~L~Le~~Gv~~d~rG~I~VD~~~~Ts~p~IyA~GDv~g~~ 316 (465) T PRK05249 241 EKVEGGDDGVILHLK--SG--KKIKADCLLYANGRTGNTDGLNLENIGLEADSRGQLKVNSNYQTAVPHIYAVGDVIGFP 316 (465) T ss_pred EEEEEECCEEEEEEC--CC--CEEEEEEEEECCCCCCCCCCCCCHHCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCC T ss_conf 999960876799947--99--59987089988766667665660425757899984837979877998707511257876 Q ss_pred CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE Q ss_conf 34430001232012011122222223333221000144551001478886234665899996044703441889833899 Q gi|254781053|r 319 MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK 398 (466) Q Consensus 319 ~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k 398 (466) +|+|+|.+||+++++|++|++.+.+|..+|++|||+||+|+||+||+||++++++|++++++|+.++|++..++++||+| T Consensus 317 ~lah~A~~qg~~aa~~i~g~~~~~~~~~iP~~vft~PeiA~VG~te~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~GfvK 396 (465) T PRK05249 317 SLASASMDQGRIAAQHAVGEATAHLVEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLK 396 (465) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEE T ss_conf 77267899999999997499976554667616625774577508899999769987999998874767876689867999 Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 99978998699999982998899999999998789---878996378437788999999999860897 Q gi|254781053|r 399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGG---SSEDLARICHAHPTMSEAVREAALSCFDQP 463 (466) Q Consensus 399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~---t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~ 463 (466) +++|++|++|||+|++|++|+||||.++++|.... |+++|.+++|+|||+||++++||+++++|. T Consensus 397 lv~~~~~~~IlG~~ivG~~A~elI~~~~~~~~~~~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a~~~~ 464 (465) T PRK05249 397 ILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAALDGLNRL 464 (465) T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 99999989799999989987999999999999754316699994788869888999999999876065 No 12 >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated Probab=100.00 E-value=0 Score=837.84 Aligned_cols=455 Identities=38% Similarity=0.639 Sum_probs=427.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC--CCCCCCHH Q ss_conf 1999989866899999999879939999379971502513667370989999999999998667558164--77532899 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI--ASCHLDLK 81 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~--~~~~~d~~ 81 (466) .|+|||+||||++||.+|+++|++|+|||+++ +||||+|+||||||+|+++++.+... +....||+.. ..+.+||+ T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~-~GGtCln~GCiPsK~ll~~a~~~~~~-~~~~~~Gi~~~~~~~~id~~ 79 (458) T PRK06912 2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDIV-RKANHYGITLNNGSISIDWK 79 (458) T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC-CCCEEEEECHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCHH T ss_conf 49999008899999999997859599995899-78740336848789999999999999-76674595012787552899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 99999999999877777876400431011001110022210235752112322100004676652444576653210024 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVI 161 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~~ 161 (466) +++++++.++..+.++++..++..+|++++|.|+|++++++.|.+.+++++++++++||||||+|..+|.. ++++..+ T Consensus 80 ~~~~~~~~~v~~~~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~i~a~~iiIATGs~P~~~p~~--~~d~~~~ 157 (458) T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGGKEEVVDAEQFIIATGSEPTELPFA--PFDGKWI 157 (458) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCC--CCCCCEE T ss_conf 99999999999999999999973891899152798038868998699618997418999889877469978--8788769 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 53057411111133321012344543320132201220111000011122122221122222222222223220023442 Q gi|254781053|r 162 VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSV 241 (466) Q Consensus 162 ~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i 241 (466) ++|+++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++.++++ T Consensus 158 ~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi~i~~~~~v~~i 237 (458) T PRK06912 158 LNSSHAMSLPSIPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGVEIFTGAALKGL 237 (458) T ss_pred EECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEE T ss_conf 84655406122796599989974799999999965987999984466783056789999999998669599828879999 Q ss_pred HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCC Q ss_conf 01468721699972133211000002320453121036784000012676422333776333026848702433354344 Q gi|254781053|r 242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLA 321 (466) Q Consensus 242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~ 321 (466) +..++...+ . .+++..++++|.||+|+||+||++.|+|+++|++++++| |.||++||||+|||||+|||++.++|+ T Consensus 238 ~~~~~~~~~--~-~~~~~~~~~~d~vl~a~Gr~Pn~~~l~l~~~gv~~~~~g-I~Vd~~~~Ts~p~IyA~GDv~g~~~l~ 313 (458) T PRK06912 238 NNYKKQASF--E-YEGSIQEVNPDFVLVAVGRKPRVQQLNLEKAGIQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA 313 (458) T ss_pred ECCCCEEEE--E-ECCCEEEEECCEEEEECCCCCCCCCCCHHHCCEEECCCC-EECCCCCCCCCCEEEEEECCCCCCCCC T ss_conf 866987999--9-589638996479999048766425567144183676995-474666676876499962378987773 Q ss_pred CEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEE Q ss_conf 30001232012011122222223333221000144551001478886234665899996044703441889833899999 Q gi|254781053|r 322 HKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILA 401 (466) Q Consensus 322 ~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli~ 401 (466) |+|.+||+++++|++|++.+++|..+|+++||+||+|+|||||+||++++.++++.+++|++++|+.++++++||+||++ T Consensus 314 h~A~~~g~~aa~~~~g~~~~~~~~~vP~~ift~Peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~G~vKlv~ 393 (458) T PRK06912 314 HVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFSANGKALIIGEQTGKVKVIV 393 (458) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEE T ss_conf 28999999999975799863124667359982666599858899998759986999997566703411699848999999 Q ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 78998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 402 NEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 402 ~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) |++|++|||+|++|++|+|+||.++++|++++|+++|++++|+|||++|++++|++++++|+||- T Consensus 394 d~~~~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~A~~~a~g~~~h~ 458 (458) T PRK06912 394 EPKYQEIVGISIIGPHATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVHA 458 (458) T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99989699999989999999999999998879899994167689875999999999864998899 No 13 >PRK06292 dihydrolipoamide dehydrogenase; Validated Probab=100.00 E-value=0 Score=833.18 Aligned_cols=457 Identities=46% Similarity=0.688 Sum_probs=421.8 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 93-31999989866899999999879939999379971502513667370989999999999998667558164775328 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) |+ |||+||||||||++||.+|+++|++|+|||+++ +||||+|+||||||+|+++++.+... +....+|+.. ...+| T Consensus 1 M~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~gi~~-~~~i~ 77 (460) T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP-LGGTCLNVGCMPSKALIAAAEAFHEA-KHAAKFGIHV-DPKID 77 (460) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCEEECHHHHHHHHHHHHHHHHH-HHHHHCCCCC-CCCCC T ss_conf 981698999977899999999996979099995899-88610505715159999999999999-7534148666-78409 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999999998777778-76400431011001110022210235752112322100004676652444576653210 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGIN-FLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE 158 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~ 158 (466) |++++++++..++.+...+. ...+..+|++++|.++|++++++.|.+ .+++++|++||||||+|+.+|+.. ..++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~~~~~v~v~~---~~~i~a~~vIIATGs~~~~iPg~~-~~~~ 153 (460) T PRK06292 78 GKKVMARVRSERDRFVGGVVEGLEKKPKIDKIKGTARFIDPNTVEVGN---GEEIEAKNIVIATGSRPPVIPGSW-LILG 153 (460) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECC---CEEEEECEEEEECCCCCCCCCCCC-CCCC T ss_conf 999999999999998656899997338819998489963798899789---779961589996089999999841-2488 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 02453057411111133321012344543320132201220111000011122122221122222222222223220023 Q gi|254781053|r 159 QVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV 238 (466) Q Consensus 159 ~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v 238 (466) ..++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++ |++++++++ T Consensus 154 ~~~~t~~~~~~~~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~~d~~~~~~~~~~l~~~-i~i~~~~~v 232 (460) T PRK06292 154 DRLITSDDAFELDDLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLTDPEISDQAQKLLSKE-FKIKLGAKV 232 (460) T ss_pred CCEEECHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC-CEEEECCEE T ss_conf 7289464453355588569999986788799999984698699996247543214999999999998609-889928779 Q ss_pred HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC Q ss_conf 44201468721699972133211000002320453121036784000012676422333776333026848702433354 Q gi|254781053|r 239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP 318 (466) Q Consensus 239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~ 318 (466) ++++..+++..+....+ ++.+++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|++ T Consensus 233 ~~i~~~~~~~~v~~~~~-~~~~~i~~D~vl~aiG~~Pn~~~L~l~~~gi~ld~~G~I~VD~~~~Ts~p~IyA~GDv~g~~ 311 (460) T PRK06292 233 TSVERKGDKVEVEYEKG-GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDPHTQTNVPGIYAAGDVNGGP 311 (460) T ss_pred EEEEECCCEEEEEEECC-CCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC T ss_conf 99997599799999549-96289995289991375135556572311863179998814887302887358740357887 Q ss_pred CCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE Q ss_conf 344300012320120111222-2222333322100014455100147888623466589999604470344188983389 Q gi|254781053|r 319 MLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV 397 (466) Q Consensus 319 ~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~ 397 (466) +|+|+|.+||+++++|+++.+ .+++|..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++..++++||+ T Consensus 312 ~la~~A~~qg~~a~~~i~~~~~~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G~i 391 (460) T PRK06292 312 PLLHEAADEGIIAAENAAYPQVGPVDYRVIPSVVFTDPQIASVGKTEEELKAAGIDYVVGKVPFEAQGRARVMGKNDGFV 391 (460) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCCCEEE T ss_conf 76789999999999997279984420035523786365279876889999876997799999878770211058983899 Q ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 999978998699999982998899999999998789878996378437788999999999860897749 Q gi|254781053|r 398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 (466) Q Consensus 398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~ 466 (466) ||++|++|++|||+|++|++|+|+||.++++|++++|++||++++|+|||++|++++||+++.+|+||- T Consensus 392 Kli~d~~~~~ilG~~ivg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPt~sE~~~~a~~~~~~~~~h~ 460 (460) T PRK06292 392 KVYADKKTGRLLGAHIIGPEAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLEEGLRTALRDLAAKLIHG 460 (460) T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 999999999799999989999999999999998859899994177779886999999999864788899 No 14 >PRK07845 flavoprotein disulfide reductase; Reviewed Probab=100.00 E-value=0 Score=832.97 Aligned_cols=454 Identities=29% Similarity=0.473 Sum_probs=421.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC--CCCCC Q ss_conf 3319999898668999999998799399993799715025136673709899999999999986675581647--75328 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA--SCHLD 79 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~--~~~~d 79 (466) ||||+||||||||++||++|+++|++|+|||++. +||||+|+||||||+|+++++....+. ....+|++.. ...+| T Consensus 1 M~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~-~GGtC~n~GCiPsK~Li~~a~~~~~~~-~~~~~G~~~~~~~~~~d 78 (467) T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-VGGAAVLTDCVPSKTLIASAEVRTELR-RAADLGVRFDLEDAKVD 78 (467) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCEEECCCHHHHHHHHHHHHHHHHHH-HHHHCCEECCCCCCCCC T ss_conf 9819998748899999999997879599996799-784676778366799999999999997-63525804478755506 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC------CCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC Q ss_conf 999999999999987777787640043101100111002------2210235752-112322100004676652444576 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS------NNKILVKGSS-SEETIEAKNIVIATGSEASGLPGM 152 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~------~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~ 152 (466) |++++++++.++.....++...++..+|++++|+|+|++ +++|.|...+ +.++++++++||||||+|+.+|+. T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~l~~~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIATGs~P~~lp~~ 158 (467) T PRK07845 79 LPQVNARVKRLARAQSADIRAQLERAGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIATGASPRILPTA 158 (467) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCC T ss_conf 99999999999998666699998757968997389992066567787799993589758999296999589987779997 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65321002453057411111133321012344543320132201220111000011122122221122222222222223 Q gi|254781053|r 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i 232 (466) . .++..++||+++++++++|++++|||||+||+|+|++|+++|++||++++++++||.+|+++++.+++.|+++||++ T Consensus 159 ~--~dg~~~~ts~~~~~l~~~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~~~l~~~gv~i 236 (467) T PRK07845 159 E--PDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLEEVFARRGMTL 236 (467) T ss_pred C--CCCCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEE T ss_conf 8--89851782055317100898699989879999999999973987999995574454318889999999999769099 Q ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC Q ss_conf 22002344201468721699972133211000002320453121036784000012676422333776333026848702 Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG 312 (466) Q Consensus 233 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G 312 (466) ++++++++++..+++..++. .++ +++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+| T Consensus 237 ~~~~~~~~v~~~~~~~~v~~--~~g--~~i~~d~vl~a~Gr~Pn~~~lgL~~~gv~~~~~G~I~vd~~~rTs~~~IyA~G 312 (467) T PRK07845 237 LKRSRAESVTRTGDGVLVTL--TDG--RTVEGSHALMAVGSVPNTAGLGLEEVGVELGPGGHITVDRVSRTSVPGIYAAG 312 (467) T ss_pred ECCCEEEEEEECCCEEEEEE--CCC--CEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 72887999998098269998--899--79987799995450255255570321875477885667987665877099970 Q ss_pred CCCCCCCCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCC Q ss_conf 433354344300012320120111222-2222333322100014455100147888623466589999604470344188 Q gi|254781053|r 313 DVVRGPMLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMN 391 (466) Q Consensus 313 Dv~g~~~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~ 391 (466) ||++.++|+|+|.+||+++++|+++++ .+++|+.+|+++||+||+|+|||||+||+++++++++.+++|+.++|+++++ T Consensus 313 Dv~g~~~l~h~A~~qg~ia~~n~~g~~~~~~~~~~ip~~vft~PeiA~VGlte~ea~~~~~~~~~~~~~~~~~~ra~~~~ 392 (467) T PRK07845 313 DCTGVLPLASVAAMQGRIAMYHALGEGVSPIRLRTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSG 392 (467) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHCCC T ss_conf 45788676558999999999997079975443455624896574334003889999877997699999777585764079 Q ss_pred CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 983389999978998699999982998899999999998789878996378437788999999999860897 Q gi|254781053|r 392 SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463 (466) Q Consensus 392 ~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~ 463 (466) .++||+|+++|+++++|||+|++|++|+|+||.+++||++++|++||.+++|+|||+||++++||+.++.++ T Consensus 393 ~~~G~~Kli~~~~~~~iLG~~ivG~~A~elI~~~a~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~l~~~~ 464 (467) T PRK07845 393 LRDGFVKIFCRPGTGVVIGGVVVAPRASELILPIAVAVQNRLTVDDLAQTFAVYPSLSGSITEAARRLMAHD 464 (467) T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 982699999999989699999989998999999999998839899993167779878999999999865787 No 15 >PRK06370 mercuric reductase; Validated Probab=100.00 E-value=0 Score=823.67 Aligned_cols=450 Identities=32% Similarity=0.516 Sum_probs=415.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC-CCCCCH Q ss_conf 3319999898668999999998799399993799715025136673709899999999999986675581647-753289 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA-SCHLDL 80 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~-~~~~d~ 80 (466) +||||||||||||++||.+|+++|++|+|||++ .+||+|+|+||||||+|+++++.+... +....+|+... .+.+|| T Consensus 4 ~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~-~~GG~Cln~GCiPsK~l~~~a~~~~~~-~~~~~~g~~~~~~~~~d~ 81 (459) T PRK06370 4 RYDAVVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLA-RRAAEYGVSIGGPVAVDF 81 (459) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEECCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCH T ss_conf 175899998889999999999689919999689-977432146835289999999999999-776607922588677689 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 999999999999877777876400-4310110011100222102357521123221000046766524445766532100 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) ++++++++.++..+..++...+++ .+|+++.|.|+|.+++++.|.+ ++++++++||||||+|+.+|.. ..+.. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~~~tv~v~~----~~~~a~~iiIATGs~p~~p~ip--G~~~~ 155 (459) T PRK06370 82 KAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEGPNTVRVGG----ELLRAKRIFINTGARAAVPPIP--GLDEV 155 (459) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCC----EEEEEEEEEECCCCCCCCCCCC--CCCCC T ss_conf 99999999999875233898852258729999689971567535698----5997628998889865457778--87878 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24530574111111333210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) .++|++++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|++.||+++++++++ T Consensus 156 ~~~ts~~~~~l~~~P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gi~i~~~~~v~ 235 (459) T PRK06370 156 GYLTNETVFSLDELPEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILEREGIDVRLDAKCL 235 (459) T ss_pred CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 78744687371548954999898477999999999639889999965734555475678999999985298620275789 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) +++..+++..+.+.. +++..++++|.||+++||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|.++ T Consensus 236 ~i~~~~~~~~v~~~~-~~~~~~i~~d~vl~a~Gr~Pnt~~L~Le~~gv~~d~~G~I~Vd~~~~Ts~p~IyA~GDv~g~~~ 314 (459) T PRK06370 236 RVARDGDGIAVGLDC-AGGAPEIAGSHILVAVGRVPNTDDLGLEAAGVATDARGYIKVDDQLRTTNPGIYAAGDCNGRGA 314 (459) T ss_pred EEEEECCEEEEEEEE-CCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEEEECCCCCCC T ss_conf 999829989999997-9973899975899961431465554710038632899858879975637874498311468867 Q ss_pred CCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE Q ss_conf 443000123201201112-2222223333221000144551001478886234665899996044703441889833899 Q gi|254781053|r 320 LAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK 398 (466) Q Consensus 320 l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k 398 (466) |+|+|.+||+++++|+++ .+.+++|..+|+++||+||+|+||+||+||+++|+++++++++|+.++|++..++++||+| T Consensus 315 lah~A~~eg~~a~~n~~~~~~~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vK 394 (459) T PRK06370 315 FTHTAYNDAEIVAANLLDGGPRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMK 394 (459) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEE T ss_conf 74589999999999983699743202443046622754688538999998769987999998885755654589847999 Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHC Q ss_conf 99978998699999982998899999999998789878996378437788999999999860 Q gi|254781053|r 399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCF 460 (466) Q Consensus 399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~ 460 (466) |++|++|++|||+|++|++|+||||.+++||++++|++||.+++|+|||+||+|++||+.+- T Consensus 395 lv~~~~t~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~dl~~~i~~hPT~sE~l~~aa~~~~ 456 (459) T PRK06370 395 VHVDADTDRILGATILGVHGDEMIHEILDAMTAGAPYTTLSRAMHIHPTVSELIPTLAQALR 456 (459) T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 99999989799999988999999999999998889899994077779886999999999744 No 16 >PTZ00153 lipoamide dehydrogenase; Provisional Probab=100.00 E-value=0 Score=823.68 Aligned_cols=456 Identities=32% Similarity=0.538 Sum_probs=403.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHH--HHHHCCEEC------ Q ss_conf 319999898668999999998799399993799-71502513667370989999999999998--667558164------ Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPSKALLHASEMYSHIAK--EAGDLGINI------ 73 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~~g~~~------ 73 (466) |||+|||+||+|+.||++|+++|+||+|||.++ .+||||+||||||||+|+++++.++.+.+ +...||+.. T Consensus 124 YDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~g~~ 203 (673) T PTZ00153 124 YDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAFGKN 203 (673) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 79899998762899999999849869999368787477242777321199998735799886145565337511323433 Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-------EEEEEEEEEECCCCCCCCCCCCCCCCC Q ss_conf -------------775328999999999999987777787640043-------101100111002221023575211232 Q gi|254781053|r 74 -------------ASCHLDLKKMMSYKKSIVESNTQGINFLLKKNK-------IITYHGSARIVSNNKILVKGSSSEETI 133 (466) Q Consensus 74 -------------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~-------V~~~~g~a~~~~~~~v~V~~~~~~~~i 133 (466) ...++|+.+++++++.++++++.++...+++.+ |+++.|++++.+++++.++.. .+++ T Consensus 204 ~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~~~~~v~~~~~--~~~~ 281 (673) T PTZ00153 204 GKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHIIDKNIIKGEKS--GKEF 281 (673) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEECCCCEEEECCC--CCEE T ss_conf 32221111222354211569999999999999875017767540676666663599933037714634774378--8555 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC Q ss_conf 21000046766524445766532100245305741111113332101234454332013220122011100001112212 Q gi|254781053|r 134 EAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM 213 (466) Q Consensus 134 ~ad~iviATGs~p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~ 213 (466) +++++||||||+|+.+|+++ .+++.++|||++++|+.+|++++|||||+||+|||++|++||++||++|..|++||.+ T Consensus 282 ~aKnIIIATGS~P~~ppgi~--iD~k~V~TSd~AL~Le~lPk~m~IIGgGvIGlEFAsvy~aLGseVTvIE~~~~ILP~~ 359 (673) T PTZ00153 282 KVKNIIIATGSTPNIPDNIE--IDDKSVFTSDEAVKLEGLKNYMGIIGMGIIGIEFADIYTALGSEIIFFDYSPELLPII 359 (673) T ss_pred ECCEEEECCCCCCCCCCCCC--CCCCEEECHHHHCCHHHCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 02307990188778899878--6876686303312700078658998776401319999997698699995366568988 Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEEEEC-------------CCCCCCEEEEEEECCCCEEEECC Q ss_conf 222112222222-2222223220023442014687216999721-------------33211000002320453121036 Q gi|254781053|r 214 DKEIAAHCLKIM-SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTD-------------DEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 214 d~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~-------------g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) |+|+++.+++.| +++||++++++.++.++...++..|++...+ ++..++++|.+|+|+||+|||++ T Consensus 360 D~DIsk~ler~flK~rGI~i~~gt~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~leaD~vLVAvGR~PnT~~ 439 (673) T PTZ00153 360 DADVAKYFERVFIKNKPMNVHLNTEIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELHVDSCLVATGRKPNTNN 439 (673) T ss_pred CHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCC T ss_conf 99999999999864049489962179999863898579996223344444332223566516871899985265027788 Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEECCC------CEEECCCCCCCCCCCEECCCCCCEEECCCCCC-------------- Q ss_conf 7840000126764223337763330268------48702433354344300012320120111222-------------- Q gi|254781053|r 280 LGLEEIGINIDHRGCIEIGGQFQTSIST------IYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK-------------- 339 (466) Q Consensus 280 l~Le~~gi~~~~~G~I~vd~~~~Ts~p~------IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~-------------- 339 (466) |+||++||+++ +|+|.||++||||+|+ |||+|||+++|+|||+|.+||++++++|.|+. T Consensus 440 LGLE~~GI~~~-rG~I~VDe~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~Gk~g~~~~~d~~~~~~~ 518 (673) T PTZ00153 440 LGLEKLKIQMK-RGYVQVDDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIEAKEGEALKIDPENGSHS 518 (673) T ss_pred CCCHHHCEEEC-CCEEEECCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 88364182533-79799799637568888667787999856885256879998679999987254554333453334433 Q ss_pred ----CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEE-----------------EEEECCC--------CHHHHC Q ss_conf ----22223333221000144551001478886234665899-----------------9960447--------034418 Q gi|254781053|r 340 ----GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVG-----------------KFPFSAN--------GRARSM 390 (466) Q Consensus 340 ----~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~-----------------~~~~~~~--------~ra~~~ 390 (466) .++||+.||+++||+||+|+|||||+|||+.+.++.++ .++|..+ ++|.++ T Consensus 519 ~~~~~Pi~Y~~IPs~iYT~PEIAsVGlTE~eAKe~g~~~~vGv~~~~fKan~kalae~~~f~F~~~~~~~a~~~GkA~~~ 598 (673) T PTZ00153 519 DWASKPIIYKNIPSVCYTNPELAFIGLTEKEAKQLHPPDNVGVEISFYKANSKILCEHNDISFNNLKKNNSYNKGKYNIN 598 (673) T ss_pred CCCCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 33456655687770775787404610089999850666553501210134301110023345553222211234300025 Q ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 8983389999978998699999982998899999999998789878996378437788999999999860897 Q gi|254781053|r 391 NSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463 (466) Q Consensus 391 ~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~ 463 (466) ++++||+|+|+|+++++|||+|++|++|+|||+.+++||.+++|++||++++|+|||+||+|.+|-.++.+-. T Consensus 599 get~GfvKiI~dk~T~eILGahIiG~~AtELI~E~~lA~~~~~t~edla~tIHaHPTLSEvl~~afk~~~~~~ 671 (673) T PTZ00153 599 DHTNGMVKIIFKEDSKEILGMFIVGNYASILIHEAVLAINLKLSAFDLAHMVHSHPTISEVLDAAFKAIAKIR 671 (673) T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 7888649999978999599999988989999999999998599999996123789988998999999864132 No 17 >PRK07846 mycothione/glutathione reductase; Reviewed Probab=100.00 E-value=0 Score=810.04 Aligned_cols=447 Identities=27% Similarity=0.452 Sum_probs=407.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 33199998986689999999987993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) +|||+|||+||||+.+|.++ .|+||+|||++. +||||+|+||||||+|+++++.+..+ +....+|++.....+||+ T Consensus 1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~-~GGtCln~GCiPsK~ll~~a~~~~~~-~~~~~~gi~~~~~~~~~~ 76 (453) T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVAQTI-REASRLGVDAHIDRVRWP 76 (453) T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCHH T ss_conf 97789989888999999998--299299997899-77817161668899999999999999-765626820677841999 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE Q ss_conf 999999999998777-7787640043101100111002221023575211232210000467665244457665321002 Q gi|254781053|r 82 KMMSYKKSIVESNTQ-GINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466) Q Consensus 82 ~~~~~~~~~v~~~~~-~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466) +++++++..++.+.. +.+.+++..+|++++|+|+|++++++.|..+++.++|+++++||||||+|+.+|.. ..++.. T Consensus 77 ~~~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~~~~~v~v~~~~~~~~i~a~~iiIATGS~P~~p~~~--g~~~~~ 154 (453) T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFVDADGLYTLRTGDGEEITADQIVIAAGSRPVIPPAI--ADSGVR 154 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCEEEEECEEEEECCCCCCCCCCC--CCCCCE T ss_conf 999999999999987569997158991899848999159867861379846998164999028877789986--657877 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 45305741111113332101234454332013220122011100001112212222112222222222222322002344 Q gi|254781053|r 161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) ++||+++++++++|+|++|||||+||+|||++|++||++||++++++++|+.+|+++++.+.+.++ .++++++++.+++ T Consensus 155 ~~ts~~~l~l~~lP~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~~-~~i~i~~~~~v~~ 233 (453) T PRK07846 155 YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIAG-KKWDLRLGRNVVG 233 (453) T ss_pred EEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-CCEEEEECCEEEE T ss_conf 986643001543886499989975799999999952992689974653244347899999999986-4859995768999 Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC Q ss_conf 20146872169997213321100000232045312103678400001267642233377633302684870243335434 Q gi|254781053|r 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML 320 (466) Q Consensus 241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l 320 (466) ++..++++.++.. ++ .++++|.||+|+||+||++.|+|+++|++++++|+|.||++||||+|||||+|||+++++| T Consensus 234 ~~~~~~~~~v~~~--~g--~~i~~d~vl~a~GR~Pn~~~l~l~~~gi~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~l 309 (453) T PRK07846 234 VSQDGSGVTLRLD--DG--STVDADVLLVATGRVSNGDLLDAEAAGVDVHEDGRVKVDEYQRTSARGVFALGDVSSPYQL 309 (453) T ss_pred EEEECCEEEEEEC--CC--CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCC T ss_conf 9970983599947--99--6998549999777566635558331477445468543267446478729998746887676 Q ss_pred CCEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE Q ss_conf 4300012320120111222--22223333221000144551001478886234665899996044703441889833899 Q gi|254781053|r 321 AHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK 398 (466) Q Consensus 321 ~~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k 398 (466) +|+|.+||+++++|+++.. ..+||..+|+++||+||+|+||+||+||+++|++|.+..++|+.+++++.+++++||+| T Consensus 310 ah~A~~qg~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~vK 389 (453) T PRK07846 310 KHVANHEARVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVK 389 (453) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEE T ss_conf 22899999999999725899732246764159981786799869999998769977999997787611000279858999 Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH Q ss_conf 999789986999999829988999999999987898789963784-3778899999999986 Q gi|254781053|r 399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAVREAALSC 459 (466) Q Consensus 399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l~~aa~~~ 459 (466) +++|+++++|||+|++|++|+||||.+++||++++|++||++++| +|||++|++++|++.+ T Consensus 390 li~d~~~~~IlG~~ivg~~A~ElI~~~alai~~~~t~~dla~~~~~~HPT~sE~i~~A~~~l 451 (453) T PRK07846 390 LIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLTAREMARGQYWIHPALPEVVENALLGL 451 (453) T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHC T ss_conf 99999989899999988999999999999998779599994188667996289999999636 No 18 >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=100.00 E-value=0 Score=810.83 Aligned_cols=433 Identities=30% Similarity=0.505 Sum_probs=396.2 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 93-3199998986689999999987993999937997-150251366737098999999999999866755816477532 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |+ |||+||||||||++||.+|+++|++|+|||+++. +||||+|+||||||+|++.++. .. T Consensus 1 M~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPsK~Li~~a~~------------------~~ 62 (441) T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------------------HT 62 (441) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH------------------CC T ss_conf 997898999978899999999997899299997589987732456685888999999987------------------25 Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCC Q ss_conf 899999999999998777-778764004310110011100222102357521123221000046766524--44576653 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQ-GINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSID 155 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~-~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~--~iP~~~~~ 155 (466) ||.+.+++++..++.+++ .++.+.+..+|++++|+|+|+++++++|...+++++++++++||||||+|. ++|+.. T Consensus 63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~l~a~~ivIATGs~p~~p~ipg~~-- 140 (441) T PRK08010 63 DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPDGNLEIHGEKIFINTGAQSVVPPIPGIT-- 140 (441) T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC-- T ss_conf 799999879999999875539888542695899989998579823776489989998258999337765455568757-- Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 21002453057411111133321012344543320132201220111000011122122221122222222222223220 Q gi|254781053|r 156 FDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLN 235 (466) Q Consensus 156 ~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~ 235 (466) +...++||+++++++++|+|++|||||+||+|+|++|++||++||++++.+++|+.+|+++++.+++.|+++||+++++ T Consensus 141 -~~~~v~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il~~~D~~~~~~l~~~l~~~Gi~i~~~ 219 (441) T PRK08010 141 -TTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN 219 (441) T ss_pred -CCCEEECHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEECC T ss_conf -8753985078525211696799989858999999999975987889704673266311468999999998788599738 Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCC Q ss_conf 02344201468721699972133211000002320453121036784000012676422333776333026848702433 Q gi|254781053|r 236 SKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV 315 (466) Q Consensus 236 ~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~ 315 (466) +.+++++..+++..+. ..+ .++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||+ T Consensus 220 ~~v~~i~~~~~~~~v~--~~~---~~~~~d~vlva~Gr~Pn~~~L~le~~gv~~~~~G~I~Vd~~~~Ts~~~IyA~GDv~ 294 (441) T PRK08010 220 AHVERISHHENQVQVH--SEH---AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT 294 (441) T ss_pred CEEEEEEECCCEEEEE--ECC---CEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCEEEEECCC T ss_conf 6799999539989999--768---67866489994476655444560322853578898866898873887689970268 Q ss_pred CCCCCCCEECCCCCCEEECCCCC--CCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCC Q ss_conf 35434430001232012011122--2222233332210001445510014788862346658999960447034418898 Q gi|254781053|r 316 RGPMLAHKAEDEGIAVAEIISGQ--KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSI 393 (466) Q Consensus 316 g~~~l~~~A~~~g~~aa~~i~~~--~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~ 393 (466) |.++|+|+|.+||+++++++++. ....||..+|+++||+||+|+||+||+||+++|++|.+.+++|+.++|++.++++ T Consensus 295 g~~~lah~A~~e~~~~~~~i~~~~~~~~~~~~~vP~~vft~PeiA~VGlte~~a~~~G~~~~~~~~~~~~~~ra~~~~~~ 374 (441) T PRK08010 295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT 374 (441) T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCC T ss_conf 98676368999999999998367997545445662476137632788689999986599889999987767242341898 Q ss_pred CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 338999997899869999998299889999999999878987899637843778899999999986 Q gi|254781053|r 394 DGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSC 459 (466) Q Consensus 394 ~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~ 459 (466) +||+|+++|+++++|||+|++|++|+|+||.+++||++++|++||++++|+|||+||+|+++.+.+ T Consensus 375 ~G~~Klv~d~~t~~ILGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~HPTlsE~l~e~~~~~ 440 (441) T PRK08010 375 RGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV 440 (441) T ss_pred CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 389999999996989999998999899999999999878989999317777987489999999842 No 19 >PRK06116 glutathione reductase; Validated Probab=100.00 E-value=0 Score=803.17 Aligned_cols=439 Identities=30% Similarity=0.489 Sum_probs=404.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) |||+||||||||++||.+|+++|++|+|||++ .+||||+|+||||||+|++++++...+.+.+..+|++.....+||++ T Consensus 5 YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d~~~ 83 (450) T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-ELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFDWKK 83 (450) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 88899998889999999999687969999379-97852541571646999999999999997787558136877528999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 99999999998777778764004310110011100222102357521123221000046766524445766532100245 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIV 162 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~~~ 162 (466) ++++++..++++.+.+...++..+|++++|.|+|+++++++|.+ ++++++++||||||+|+. |.++ . .+..+ T Consensus 84 ~~~~~~~~i~~l~~~~~~~~~~~~V~~~~g~a~f~~~~tv~v~~----~~i~a~~ivIATGs~p~~-p~ip--G-~e~~~ 155 (450) T PRK06116 84 LIANRDAYIDRLHGSYRRGLENNGVDLIEGFARFVDAHTVEVNG----ETYTADHILIATGGRPSI-PDIP--G-AEYGI 155 (450) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC----EEEEEEEEEECCCCCCCC-CCCC--C-CCEEE T ss_conf 99999999999999999998768968997068872687403598----298541799987897758-9998--8-11266 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 30574111111333210123445433201322012201110000111221222211222222222222232200234420 Q gi|254781053|r 163 SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVK 242 (466) Q Consensus 163 t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 242 (466) ||+++|+++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++.+++++ T Consensus 156 tsd~~~~l~~lP~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l~~~gi~i~~~~~v~~v~ 235 (450) T PRK06116 156 TSDGFFALEELPKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIQLHTNAVPKAVE 235 (450) T ss_pred ECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEE T ss_conf 14452254547977999999666999999999609848999944840120487777999999986497896398899999 Q ss_pred CCCCC-CEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCC Q ss_conf 14687-21699972133211000002320453121036784000012676422333776333026848702433354344 Q gi|254781053|r 243 KVKGK-AQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLA 321 (466) Q Consensus 243 ~~~~~-~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~ 321 (466) ..+++ ..+.+ .++ +++++|.||+|+||+||++.|+|+++||++|++|+|.||+++|||+|||||+|||++.++|+ T Consensus 236 ~~~~g~~~v~~--~~g--~~~~~d~vl~a~Gr~Pnt~~l~L~~~gv~l~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~la 311 (450) T PRK06116 236 KNADGSLTLTL--EDG--ETLTVDCLIWAIGREPNTDNLGLENTGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELT 311 (450) T ss_pred ECCCCCEEEEE--CCC--CEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCH T ss_conf 85996289998--799--79997089991784205565675014767757887657877777886337500146876766 Q ss_pred CEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCHHHHCCCCCEEE Q ss_conf 300012320120111222--22223333221000144551001478886234--66589999604470344188983389 Q gi|254781053|r 322 HKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGRARSMNSIDGFV 397 (466) Q Consensus 322 ~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~ra~~~~~~~g~~ 397 (466) |+|.+||+++++|+++.+ .+++|+.+|+++||+||+|+||+||+||++++ .++.+++.+|.+++++...+.++||+ T Consensus 312 h~A~~~g~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~~~v~v~~~~~~~~~~a~~~~~~~g~~ 391 (450) T PRK06116 312 PVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGDDNVKVYRSSFTPMYTALTGHRQPCLM 391 (450) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCEEE T ss_conf 89999999999998189997652568633688526401888789999997379975899992257515563189886799 Q ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH Q ss_conf 999978998699999982998899999999998789878996378437788999999 Q gi|254781053|r 398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVRE 454 (466) Q Consensus 398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~ 454 (466) ||++|++|++|||+|++|++|+|+||.+++||++++|++||.+++|+|||++|.|.. T Consensus 392 Klv~d~~t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i~~hPT~sE~f~~ 448 (450) T PRK06116 392 KLVVDGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVT 448 (450) T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH T ss_conf 999999979799999989999999999999998789899992367669862334642 No 20 >TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Probab=100.00 E-value=0 Score=805.77 Aligned_cols=444 Identities=27% Similarity=0.451 Sum_probs=399.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 33199998986689999999987993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) +|||+|||+||||+.+|.++ .|++|+|||++. +||||+|+||||||+|+++++.+..+ ++...+|++.....+||+ T Consensus 2 ~YDviVIGaGpgG~~~a~~~--ag~kValvEk~~-~GGtCln~GCIPsK~ll~~a~~~~~~-~~~~~~Gi~~~~~~~~~~ 77 (452) T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSI-GESARLGIDAEIDSVRWP 77 (452) T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCHH T ss_conf 47689999868999999998--299099997899-27858023588899999999999999-777735832566730799 Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 999999----9999987777787640043101100111002221023575211232210000467665244457665321 Q gi|254781053|r 82 KMMSYK----KSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 82 ~~~~~~----~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) ++++++ .+.+....+.+...++..+|++++|+|+|++++++.+.. .++++++++||||||+|+.+|.. ..+ T Consensus 78 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~~~tv~v~~---g~~~~a~~iiIATGs~P~~p~~~--~~~ 152 (452) T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGD---GEEITGDQIVIAAGSRPYIPPAI--ADS 152 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEECCC---CCEEEECEEEECCCCCCCCCCCC--CCC T ss_conf 9999998767899975599998536778869999899993785798189---87898466999379988788876--778 Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 00245305741111113332101234454332013220122011100001112212222112222222222222322002 Q gi|254781053|r 158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK 237 (466) Q Consensus 158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~ 237 (466) +..++||+++|+++++|++++|||||+||+|||++|++||++||++++++++|+.+|+++++.+.+. .++++++++++. T Consensus 153 ~~~~~ts~~~l~l~~lP~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~~-~~~~~~i~~~~~ 231 (452) T TIGR03452 153 GVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEI-AKKKWDIRLGRN 231 (452) T ss_pred CCEEECCHHHHCCHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH-HHCCEEEEECCE T ss_conf 9868655655433005866999888689999999999619949999967622333488999999999-756829993238 Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC Q ss_conf 34420146872169997213321100000232045312103678400001267642233377633302684870243335 Q gi|254781053|r 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG 317 (466) Q Consensus 238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~ 317 (466) +.+++..+++..+++.+ + .++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||++. T Consensus 232 v~~~~~~~~~~~v~~~~--g--~~~~~d~vl~a~GR~Pn~~~L~l~~~gv~~~~~g~I~vd~~~~Ts~~~IyA~GDv~g~ 307 (452) T TIGR03452 232 VTAVEQDGDGVTLTLDD--G--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP 307 (452) T ss_pred EEEEEECCCEEEEEECC--C--CEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC T ss_conf 99999739803999469--9--7998228999248766636668012296435798730287678689739997406887 Q ss_pred CCCCCEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCE Q ss_conf 4344300012320120111222--22223333221000144551001478886234665899996044703441889833 Q gi|254781053|r 318 PMLAHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDG 395 (466) Q Consensus 318 ~~l~~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g 395 (466) ++|+|+|.+||+++++|+++.+ .+++|..+|+++||+||+|+||+||+||+++|+++++.+++|+.+++++.+++++| T Consensus 308 ~~Lah~A~~eg~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G 387 (452) T TIGR03452 308 YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTG 387 (452) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCE T ss_conf 57700899999999999707899741257765149982576799858999999759977999997787611111379838 Q ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH Q ss_conf 899999789986999999829988999999999987898789963784-3778899999999986 Q gi|254781053|r 396 FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAVREAALSC 459 (466) Q Consensus 396 ~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l~~aa~~~ 459 (466) |+|+++|+++++|||+|++|++|+|+||.+++||++++|++||++++| +|||+||++++|++++ T Consensus 388 ~vKlv~d~~~~~ILG~~ivG~~A~ElI~~~a~ai~~~~t~~dl~~~~~~~HPTlsE~i~eA~lal 452 (452) T TIGR03452 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452) T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHCC T ss_conf 99999999989799999989999999999999998869799994187557996289999998459 No 21 >PTZ00052 thioredoxin reductase; Provisional Probab=100.00 E-value=0 Score=805.00 Aligned_cols=445 Identities=27% Similarity=0.392 Sum_probs=394.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC Q ss_conf 319999898668999999998799399993799--------715025136673709899999999999986675581647 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA 74 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~ 74 (466) ||||||||||||+.||++|+++|+||+|||+.+ .+||||+|+||||||+|+++++.++.+.+....+|+... T Consensus 42 YDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~~~~~Gi~~~ 121 (541) T PTZ00052 42 YDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLDSQMYGWKTS 121 (541) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99899997889999999999889909999424556668717795011783628999999999999999756886583278 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC---CCCCCCCCCEEECCCCCCCCCCCCC Q ss_conf 7532899999999999998777778764004310110011100222102357---5211232210000467665244457 Q gi|254781053|r 75 SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG---SSSEETIEAKNIVIATGSEASGLPG 151 (466) Q Consensus 75 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~---~~~~~~i~ad~iviATGs~p~~iP~ 151 (466) ...+||+++++++++.++.+...+...++..+|++++|+|+|++++++.|.. .+..++++++++||||||+|..+|+ T Consensus 122 ~~~~d~~~l~~~~~~~i~~l~~~~~~~l~~~~V~~i~G~a~f~~~~tV~v~~~~~~g~~~~i~a~~iIIATGS~P~iP~~ 201 (541) T PTZ00052 122 SLSHEWGKLVETVQSHIRSLNFSYRTGLRSSNVKYINGLAKLKDPHTVEYYLKGDNSQEETITSKYILIATGCRPHIPED 201 (541) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCC T ss_conf 76316999999999999998888998887689689985899836987899842588852799952799857888767888 Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 66532100245305741111113332101234454332013220122011100001112212222112222222222222 Q gi|254781053|r 152 MSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN 231 (466) Q Consensus 152 ~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~ 231 (466) + +...+..+||+++|+++++|+|++|||||+||+|||++|++||++||++.| +++|+.+|+++++.+.+.|+++||+ T Consensus 202 i--pg~~~~~ltS~~~l~l~~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r-~~~L~~~D~di~~~l~~~l~~~GV~ 278 (541) T PTZ00052 202 V--EGAIELSITSDDIFSLKKSPGKTLVVGASYVALECAGFLNSLGFDVTVAVR-SIVLRGFDRQCAEKVKEYMEEQGVK 278 (541) T ss_pred C--CCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 7--767630206532206534896289989869999999999975985899953-7767565777999999999850749 Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCC-CCCCCCCEEECCCCEE Q ss_conf 322002344201468721699972133211000002320453121036784000012676422-3337763330268487 Q gi|254781053|r 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGC-IEIGGQFQTSISTIYA 310 (466) Q Consensus 232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~-I~vd~~~~Ts~p~IyA 310 (466) +++++.+.+++..+++..+++.+ ++ ...+|.||+|+||+||+++|+||++||+++++|+ |.+|+++|||+||||| T Consensus 279 i~~~~~v~~v~~~~~~~~v~~~d--g~--~~~~d~vLvA~GR~Pnt~~LgLe~~Gv~~~~~G~~i~~d~~~~Ts~p~IyA 354 (541) T PTZ00052 279 FKVGVLPKKLEKVNDKIKVSFSD--GT--VELYDTVLYATGRKGDIKGLNLEALNVEVSKSGNKIIPKDLSCTNVPSIFA 354 (541) T ss_pred EECCEEEEEEEECCCEEEEEECC--CC--EEEEEEEEEECCCCCCCCCCCCHHCCEEECCCCCEEEEECCCCCCCCEEEE T ss_conf 97454899999739826999768--94--788128999226556457778422065887899889513366677773999 Q ss_pred ECCCC-CCCCCCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCH Q ss_conf 02433-3543443000123201201112-2222223333221000144551001478886234--665899996044703 Q gi|254781053|r 311 IGDVV-RGPMLAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGR 386 (466) Q Consensus 311 ~GDv~-g~~~l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~r 386 (466) +|||+ |.|+|+|+|.+||+++++|+++ .+..+||+.+|+++||+||+|+|||||+||++++ .++.+...+|...+. T Consensus 355 iGDV~~G~p~Lah~A~~eg~vaa~~i~~g~~~~~d~~~IP~vvfT~PEiA~VGlTEeeA~~~~~~~~v~v~~~~f~~~~~ 434 (541) T PTZ00052 355 VGDVAEGVPELAPVAIKAGEILARRLFKGSNEIMDYDFIPTTIYTPIEYGACGYSEEKAYEKYGESNVEVFLQEFNNLEI 434 (541) T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCHHH T ss_conf 50546896424899999999999998469996556589985997589626688999999973688876898762255013 Q ss_pred HHHCC---------------CCCEEEEEEE-ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH Q ss_conf 44188---------------9833899999-7899869999998299889999999999878987899637843778899 Q gi|254781053|r 387 ARSMN---------------SIDGFVKILA-NEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE 450 (466) Q Consensus 387 a~~~~---------------~~~g~~kli~-~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E 450 (466) +.... ...||+|+++ +++++||||+|++||+|+||||.+++||++++|++||++++|+|||+|| T Consensus 435 a~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~rILG~hivGp~AsELI~e~alAm~~g~t~~dla~tih~HPTlSE 514 (541) T PTZ00052 435 SAVHREKHERAQKDEYDFDVSSTCLAKLVCLKSEDNRVVGFHYVGPNAGEVTQGMALALRLKATKKDFDDCIGIHPTDAE 514 (541) T ss_pred HHCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH T ss_conf 21001110110134323344567249999992898989999998699899999999999879999999318677998799 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781053|r 451 AVRE 454 (466) Q Consensus 451 ~l~~ 454 (466) +|.+ T Consensus 515 a~~~ 518 (541) T PTZ00052 515 SFMN 518 (541) T ss_pred HHHH T ss_conf 9986 No 22 >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=100.00 E-value=0 Score=787.99 Aligned_cols=431 Identities=31% Similarity=0.495 Sum_probs=395.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 933199998986689999999987993999937997-1502513667370989999999999998667558164775328 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) |+|||+||||||||++||.+|+++|++|+|||+++. +||||+|+||||||+|+++++ ..++ T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPsk~ll~~a~------------------~~~~ 63 (438) T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPTKTLLVAAE------------------KNLS 63 (438) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH------------------CCCC T ss_conf 9558799997889999999999788949999469987685547787040157898766------------------2799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 99999999999998777778764004310110011100222102357521123221000046766524445766532100 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) |++++++++.++++++......++..+|++++|.++|+++++++|...+..++++++++||||||+|+.+|. +...+.+ T Consensus 64 ~~~~~~~k~~~~~~l~~~~~~~~~~~gv~~~~g~a~~~~~~~v~V~~~~~~~~~~a~~iIIATGs~p~~l~i-pG~~d~~ 142 (438) T PRK07251 64 FEEVMATKNTVTSRLNAKNYAMLAGTGVDIYDAEAHFVSNKVIEVTAGDEKQELTAETIVINTGAVSNVLPI-PGLADSK 142 (438) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCC-CCCCCCC T ss_conf 999999999999999889999997489489997999816848999559972999976898726787866998-8656875 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24530574111111333210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) .+++++++++++++|++++|||||+||+|+|++|+++|++|||+++++++|+.+|+++++.+++.|++.||++++++++. T Consensus 143 ~v~~s~~~~~l~~~p~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gv~i~~~~~v~ 222 (438) T PRK07251 143 HVYDSTGIQNLEKLPKRLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFLPREEPSIAALAKQYMEEDGIEFLQNAHTT 222 (438) T ss_pred EEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE T ss_conf 69801787646537976999888645889999998348768999846100244463668999999986695999688799 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) +++.+++...+.. ++ .++++|.||+|+||+||++.|+|+++||+++++|+|+||++||||+|||||+|||++.++ T Consensus 223 ~v~~~~~~~~v~~---~~--~~~~~d~vl~a~Gr~Pnt~~l~le~~gi~~~~~G~I~vd~~~rTs~~~IyA~GDv~g~~~ 297 (438) T PRK07251 223 EVKNDGDQVVVVT---ED--ETYRFDALLYATGRKPNTEPLQLENTDIELTERGAIKVDKHCQTSVPGVFAVGDVNGGLQ 297 (438) T ss_pred EEEECCCEEEEEE---EC--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCC T ss_conf 9995699799998---27--789861899925876666656741147442789978018977667862999225578867 Q ss_pred CCCEECCCCCCEEECCCCCCC--CCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE Q ss_conf 443000123201201112222--222333322100014455100147888623466589999604470344188983389 Q gi|254781053|r 320 LAHKAEDEGIAVAEIISGQKG--HVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV 397 (466) Q Consensus 320 l~~~A~~~g~~aa~~i~~~~~--~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~ 397 (466) |+|+|.+||+++++++++... ..+|..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++..++++||+ T Consensus 298 l~~~A~~~~~~~~~~~~g~~~~~~~~~~~vP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~ 377 (438) T PRK07251 298 FTYISLDDFRIVFSYLTGDGSYTLEDRGNVPTSMFITPPLSQVGLTEKQAKEAGLPYAVKELPVAAMPRGHVNNDLRGAF 377 (438) T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEE T ss_conf 73688999999999970899875455556655897277669997889999866997799999877584664479870899 Q ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH Q ss_conf 9999789986999999829988999999999987898789963784377889999999 Q gi|254781053|r 398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREA 455 (466) Q Consensus 398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~a 455 (466) |+++|+++++|||+|++|++|+||||.+++||++++|++||++++|+|||++|+|+++ T Consensus 378 Kli~d~~~~~IlGa~ivg~~A~elI~~~~lai~~~~t~~dl~~~i~~hPT~sE~l~e~ 435 (438) T PRK07251 378 KAVVNTETKEILGATLFGAGSHEIINIITMAMDNKIPYTYFTKQIFTHPTMAENLNDL 435 (438) T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH T ss_conf 9999999698999999899989999999999988398999940577798647587687 No 23 >KOG1335 consensus Probab=100.00 E-value=0 Score=769.93 Aligned_cols=462 Identities=54% Similarity=0.880 Sum_probs=441.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEECCCCCCCHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998-66755816477532899 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGINIASCHLDLK 81 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~~~~~~~d~~ 81 (466) |||+|||+||+|+.||++++++|++++.||+...+||||+|+||||||+|++.+++++...+ ++..+|++....++|++ T Consensus 40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~ 119 (506) T KOG1335 40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQ 119 (506) T ss_pred CCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHH T ss_conf 78899877872589999998715416887315753654564363353887633378998876689860931132004789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCEE Q ss_conf 9999999999987777787640043101100111002221023575211-232210000467665244457665321002 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466) ++++.+++.++.+..+++.++++++|+++.|++.|++|++|.+...++. ..++++++||||||...++||+. .+++. T Consensus 120 ~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~--IDekk 197 (506) T KOG1335 120 AMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGIT--IDEKK 197 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCEE--ECCCE T ss_conf 9998777789997668998876348389951376538746888535897337863169996177567789757--63766 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 45305741111113332101234454332013220122011100001112212222112222222222222322002344 Q gi|254781053|r 161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) +++|+.++.|++.|++++|||+|+||+||++.|++||++||++|..+++.+.+|.|+++.+++.|.+.|+++++++.+.+ T Consensus 198 IVSStgALsL~~VPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgi~F~l~tkv~~ 277 (506) T KOG1335 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTS 277 (506) T ss_pred EEECCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEEE T ss_conf 87147734331175157997474566554668876377179998443444655889999999999863823672327887 Q ss_pred HHCCCC-CCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC Q ss_conf 201468-721699972-133211000002320453121036784000012676422333776333026848702433354 Q gi|254781053|r 241 VKKVKG-KAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP 318 (466) Q Consensus 241 i~~~~~-~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~ 318 (466) ++...+ .+.+++.+. +++..+++||.+|+++||+|.|++|+||+.|++.|++|++.||..++|.+||||++|||+.+| T Consensus 278 a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gp 357 (506) T KOG1335 278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGP 357 (506) T ss_pred EEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCC T ss_conf 51068885799997557785068884289998066445466880430655365664002650134588458832567741 Q ss_pred CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE Q ss_conf 34430001232012011122222223333221000144551001478886234665899996044703441889833899 Q gi|254781053|r 319 MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK 398 (466) Q Consensus 319 ~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k 398 (466) ||+|.|..||+++.+-|.+...+++|..+|+++||+||+|+||+||+|+++.|++|+++++||+.+.|+++..+++||+| T Consensus 358 MLAhkAe~egI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~ykvgkfpF~aNsRaktn~d~eg~vK 437 (506) T KOG1335 358 MLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVK 437 (506) T ss_pred HHHHHHHHHCHHHEEEECCCCCCCCCCCCCCEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCEEE T ss_conf 43101024142230000466755656788723531673135225556687658534763100003421102577663058 Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCC Q ss_conf 999789986999999829988999999999987898789963784377889999999998608-97749 Q gi|254781053|r 399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFD-QPIHM 466 (466) Q Consensus 399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~-~~~~~ 466 (466) +++|++|+||||+|++||+|+|||+..++||..|.+.+|+++.+|+|||+||+|++|.+.++. |+||. T Consensus 438 vl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~~k~Ih~ 506 (506) T KOG1335 438 VLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYDGKPIHF 506 (506) T ss_pred EEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 986278882788886269778899998998871864777864457898478999999988650687789 No 24 >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process. Probab=100.00 E-value=0 Score=759.71 Aligned_cols=444 Identities=31% Similarity=0.495 Sum_probs=410.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE Q ss_conf 3319999898668999999998799399993799---------7150251366737098999999999999866755816 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK---------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN 72 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~---------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~ 72 (466) -||+-|||||++|+.||+.+|.+|+||++-|... -+||||+=+||||+|.|+|+++.-.++ +++..|||+ T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~l-edA~gYGW~ 80 (478) T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEEL-EDAKGYGWT 80 (478) T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHH-HHHHCCCCE T ss_conf 7630687067166899999987299089821567873512237746747882440750357212230233-555248846 Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC---CCCCC--CCCCEEECCCCCCCC Q ss_conf -477532899999999999998777778764004310110011100222102357---52112--322100004676652 Q gi|254781053|r 73 -IASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG---SSSEE--TIEAKNIVIATGSEA 146 (466) Q Consensus 73 -~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~---~~~~~--~i~ad~iviATGs~p 146 (466) .++.++||++++..|+..+.++..-|...|+++++++++|.|+++++|||+|.. .+..+ +|+|+|++||||+|| T Consensus 81 i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrp 160 (478) T TIGR01424 81 IVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRP 160 (478) T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCC T ss_conf 87211157789876577888866688899888533044304337836815797410378788316787759999877878 Q ss_pred -C--CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf -4--4457665321002453057411111133321012344543320132201220111000011122122221122222 Q gi|254781053|r 147 -S--GLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLK 223 (466) Q Consensus 147 -~--~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~ 223 (466) . .+|| .++.+|||++|+|+.+|||++|+||||||+|||.+|+-||++|||+.|++.+|++||+|+...+.+ T Consensus 161 s~kP~lPG------~ElgITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~R~~~~~ 234 (478) T TIGR01424 161 SVKPELPG------HELGITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDDDMRAELAE 234 (478) T ss_pred CCCCCCCC------CCCCCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 78888568------521304132417200554689986760012022232367832523451665467686899999999 Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCC----------C Q ss_conf 222222223220023442014687216999721332110000023204531210367840000126764----------2 Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR----------G 293 (466) Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~----------G 293 (466) .|+++||+++..+.+++|++.+++..+...+++ ...++.+|.||+|+||.||+++||||++||++++. | T Consensus 235 ~le~~Gi~i~~~~~~~~i~~~~~GR~~~~~sGe-~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sieGPGystmg 313 (478) T TIGR01424 235 ELEERGIRIVPKDSVTSIEKVDDGRLKVTLSGE-KDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIEGPGYSTMG 313 (478) T ss_pred HHHCCCEEEEECCHHHHHHCCCCCCEEEEEECC-CCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCCCCCCCCC T ss_conf 875297389501044364207898789997468-9981654332320088776576361011506510101478744125 Q ss_pred CCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC- Q ss_conf 2333776333026848702433354344300012320120111-22222223333221000144551001478886234- Q gi|254781053|r 294 CIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK- 371 (466) Q Consensus 294 ~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~- 371 (466) .|.||+|.|||.|+|||+||||++.+|+|||.+||..-++.-| +++++++|++|.++|||.||++.|||||+||+++- T Consensus 314 Ai~Vd~YS~T~~P~IyAvGDvTdRinLTPVAi~Ea~aFa~teF~gnpt~~~h~~vA~AVFS~P~~~~vGlsE~EA~~~~~ 393 (478) T TIGR01424 314 AIAVDEYSRTSVPSIYAVGDVTDRINLTPVAIREAAAFAETEFGGNPTEFDHDLVATAVFSQPPVGTVGLSEEEAREKFT 393 (478) T ss_pred CEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHC T ss_conf 36651546788577788603125445784788764777645417789886702133633058871111067799998817 Q ss_pred CCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHH Q ss_conf 66589999604470344188983389999978998699999982998899999999998789878996378437788999 Q gi|254781053|r 372 KSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEA 451 (466) Q Consensus 372 ~~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~ 451 (466) .++.|++.+|++.-....-.+.+.++|||+|.+++||||+||+||+|+||||.++.|+++|.|..|+..++.+|||.+|. T Consensus 394 ~~i~vy~a~FrPMk~t~~G~qEk~lmKLvV~~~~~kv~Gah~~G~dAaEi~Q~~AIAlk~G~TK~~FD~T~avHPs~AEE 473 (478) T TIGR01424 394 GDIEVYRAEFRPMKATFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGVAIALKMGATKKDFDSTVAVHPSSAEE 473 (478) T ss_pred CEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCEECCCCHHH T ss_conf 91899982787743311387336888876447787388988737984899999999984688732154811006661321 Q ss_pred HH Q ss_conf 99 Q gi|254781053|r 452 VR 453 (466) Q Consensus 452 l~ 453 (466) |- T Consensus 474 lV 475 (478) T TIGR01424 474 LV 475 (478) T ss_pred HC T ss_conf 11 No 25 >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process. Probab=100.00 E-value=0 Score=757.66 Aligned_cols=450 Identities=29% Similarity=0.470 Sum_probs=412.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC----CCC Q ss_conf 3319999898668999999998799399993799715025136673709899999999999986675581647----753 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA----SCH 77 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~----~~~ 77 (466) .||.+|||||++|++.|.||+.+|+|++|||..+ +||||+|+||||+|.||++|++...+.++..+||+... ... T Consensus 2 ~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~-LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld~~~ 80 (475) T TIGR01421 2 EYDYLVIGGGSGGIASARRAAEHGAKALLVEEKK-LGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLDKEN 80 (475) T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHC-CCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 7546998368615788898885076078762000-488068501137623200567778875221027854336410036 Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC--CCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC Q ss_conf --2899999999999998777778764004310110011100222--10235752-112322100004676652444576 Q gi|254781053|r 78 --LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN--KILVKGSS-SEETIEAKNIVIATGSEASGLPGM 152 (466) Q Consensus 78 --~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~--~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~ 152 (466) +||+++.+.|+..+++++..|+..|++++||+++|+|+|++++ ||+|++.. ..+.|+|.||+||||++|. +|.. T Consensus 81 l~F~f~~l~~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nttevy~A~HIliATGG~p~-~phe 159 (475) T TIGR01421 81 LKFNFKELKEKRDAYVDRLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENTTEVYTAPHILIATGGKPS-IPHE 159 (475) T ss_pred CEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCCCC-CCCC T ss_conf 600779998766789999888752486505543898678874888963477364243025762705894487247-8754 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65321002453057411111133321012344543320132201220111000011122122221122222222222223 Q gi|254781053|r 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i 232 (466) +.-+..+.-.+||++|.|+++|+|++|||+||||+|||.+|+.||++.+|+.|.+++|+.||.-+++.+.+.+++.|+++ T Consensus 160 ~~IPG~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~~i~~~~~~~~~~~G~~v 239 (475) T TIGR01421 160 ENIPGAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDSMISEKVVEEYEKEGLEV 239 (475) T ss_pred CCCCCCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 67784010577002002201787179990738988888887312640225773673667401466426689999679602 Q ss_pred CCCHHHHHHHCCCCC--CEEEEEEECCC----CCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC Q ss_conf 220023442014687--21699972133----211000002320453121036784000012676422333776333026 Q gi|254781053|r 233 QLNSKVSSVKKVKGK--AQVVYRSTDDE----PINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSIS 306 (466) Q Consensus 233 ~~~~~v~~i~~~~~~--~~v~~~~~~g~----~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p 306 (466) |....+.+++++-++ ..+++.++.|. ....++|.||||+||+||+++|+||++||++|++|+|+||+|.-|+++ T Consensus 240 h~~~~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR~Pn~~~L~le~~gv~ld~kg~i~vDeyQNT~v~ 319 (475) T TIGR01421 240 HKLSKPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWAIGRKPNTKGLGLEKVGVKLDEKGYIIVDEYQNTNVE 319 (475) T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCC T ss_conf 15660479984157864799996688865310234305678740588567355442132125668873887441067318 Q ss_pred CCEEECCCCCCCCCCCEECCCCCCEEECCCCCC----CCCCCCCCCCCEEEHHHHHHHHHCHHHHH-HCCCC-EEEEEEE Q ss_conf 848702433354344300012320120111222----22223333221000144551001478886-23466-5899996 Q gi|254781053|r 307 TIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK----GHVNYGIIPSVVYTHPEVASIGKTEEQLK-CEKKS-YKVGKFP 380 (466) Q Consensus 307 ~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~----~~~~~~~ip~~vft~peia~vGlte~~a~-~~~~~-~~v~~~~ 380 (466) ||||+|||+|...|+|||+..||-+++.||+.+ .++||.+||++|||+|++++|||||+||- +.|.| +||++.+ T Consensus 320 gIYAlGDV~Gk~~LTPVAIaAGR~LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~Ai~~YG~e~vKvY~ss 399 (475) T TIGR01421 320 GIYALGDVVGKVELTPVAIAAGRKLSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEAIEKYGKENVKVYKSS 399 (475) T ss_pred CEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECC T ss_conf 85872226811007737877303678763687300013465024880387377843003787899986087544374046 Q ss_pred ECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH Q ss_conf 0447034418898338999997899869999998299889999999999878987899637843778899999 Q gi|254781053|r 381 FSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR 453 (466) Q Consensus 381 ~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~ 453 (466) |.+.+-|.....+++-.||||--+..||+|.|++|....||+|.||+||+||.|.-|+..++-+|||-||.|- T Consensus 400 Ft~MY~A~~~~k~~~~~Klvcag~eEKvVGLH~~G~g~dEmLQGFAVAiKMGATKADFDntVAIHPTsSEElV 472 (475) T TIGR01421 400 FTPMYYALTKEKQKCRMKLVCAGKEEKVVGLHGIGLGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELV 472 (475) T ss_pred CHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCEEECCCCCCCHHC T ss_conf 4257888726888665178973898667877420452233231140243347854541570000777600000 No 26 >TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport. Probab=100.00 E-value=0 Score=674.18 Aligned_cols=448 Identities=29% Similarity=0.455 Sum_probs=393.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--------CCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEE Q ss_conf 331999989866899999999879939999379--------971502513667370989999999999998-66755816 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE--------KTYGGTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGIN 72 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~--------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~ 72 (466) +||+|||||||+||+||.+||++|++|+|+|-= .-+||||+|+||||+|+|.+++.+ .+..+ ++..|||+ T Consensus 2 dyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPKKLMHqAa~~-G~~lklds~~YGWn 80 (513) T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPKKLMHQAALL-GKALKLDSKKYGWN 80 (513) T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH-HHHHHHHHHHCCCC T ss_conf 64279985897346899999860991899963356988821476753575055483567888887-68875535651888 Q ss_pred CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC--C---CCCCCCCCEEECCCCCC Q ss_conf 477---532899999999999998777778764004310110011100222102357--5---21123221000046766 Q gi|254781053|r 73 IAS---CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG--S---SSEETIEAKNIVIATGS 144 (466) Q Consensus 73 ~~~---~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~--~---~~~~~i~ad~iviATGs 144 (466) ..+ .+.||+++.+.+++.++.++..|...|...+|.++++.|+|+|++++.|.. . +.++.+++.+++||||. T Consensus 81 ~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~kGd~~ke~~~sa~~~lIaTG~ 160 (513) T TIGR01438 81 VEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATDKGDKKKEEILSAKRVLIATGL 160 (513) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECCEEEEECCC T ss_conf 53664322237899998864555400320000101540266300244278468999860678763204503636980478 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 52444576653210024530574111111333210123445433201322012201110000111221222211222222 Q gi|254781053|r 145 EASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI 224 (466) Q Consensus 145 ~p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~ 224 (466) ||+ +|+ +++++.+..+||||+|.|.+.|.+.+|||+||+|+|+|.+|+.||.+||++.|+ -+|++||++++..+..+ T Consensus 161 RP~-yp~-~ipGaKEl~ItSDDlFsL~~~PGKTLvVGasYVALECaGFL~~~g~dV~V~VRS-I~LrGFDqdca~kv~eh 237 (513) T TIGR01438 161 RPK-YPD-DIPGAKELSITSDDLFSLKKVPGKTLVVGASYVALECAGFLAALGLDVTVLVRS-ILLRGFDQDCAVKVKEH 237 (513) T ss_pred CCC-CCC-CCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEE-EECCCCCHHHHHHHHHH T ss_conf 888-888-888840110130122036688686578776142357788986339964999988-52347577899999988 Q ss_pred CCCCCCCCCCCHHHHHHHCCCC------CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCC Q ss_conf 2222222322002344201468------721699972133211000002320453121036784000012676-422333 Q gi|254781053|r 225 MSKQGMNFQLNSKVSSVKKVKG------KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEI 297 (466) Q Consensus 225 l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~v 297 (466) |++.||.+..+..+.+++..++ +..+.+++.+|++..=++|.||||+||.|+++.||||++|+.+|+ +|.|.+ T Consensus 238 m~e~Gvkfk~~~~p~kve~~~~GtPGrlk~~v~ftD~~G~~~~eeYdTVl~AiGR~~~~~~lnLen~gv~~nk~~gKI~a 317 (513) T TIGR01438 238 MKEQGVKFKEQVVPKKVEKVDSGTPGRLKVLVKFTDKDGNTIEEEYDTVLYAIGRKADLKKLNLENVGVKVNKKSGKILA 317 (513) T ss_pred HHCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEE T ss_conf 64089688701467876651588995178999984578874442301156662587664431632132076155787750 Q ss_pred CCCCEEECCCCEEECCCC-CCCCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHH-CCC-C Q ss_conf 776333026848702433-35434430001232012011122222-2233332210001445510014788862-346-6 Q gi|254781053|r 298 GGQFQTSISTIYAIGDVV-RGPMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKC-EKK-S 373 (466) Q Consensus 298 d~~~~Ts~p~IyA~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~-~~~-~ 373 (466) |+.-|||+|.|||+||+. +.+.|+|+|++.|+++|+.||+.... +||..||++|||..|++++|+|||+|-+ .|. + T Consensus 318 de~~~tn~p~iyAvGDi~e~~~ELtPvAIqaG~lLA~RLf~~S~~i~dy~~vpTtvfTPlEyg~cGlsEEkA~ek~Ge~n 397 (513) T TIGR01438 318 DELERTNVPSIYAVGDIVEDKLELTPVAIQAGKLLADRLFKDSKEIVDYENVPTTVFTPLEYGACGLSEEKAVEKYGEEN 397 (513) T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCHHHCCCCCCHHHHHHHHCCCC T ss_conf 32335788827886456548655543778877999987414882688426778414441341236765789998739850 Q ss_pred EEEEEEEECCC---------C-HHHHC-----CCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH Q ss_conf 58999960447---------0-34418-----8983389999978-9986999999829988999999999987898789 Q gi|254781053|r 374 YKVGKFPFSAN---------G-RARSM-----NSIDGFVKILANE-KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSED 437 (466) Q Consensus 374 ~~v~~~~~~~~---------~-ra~~~-----~~~~g~~kli~~~-~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~ 437 (466) ++|+...|.++ . |++-. -...+++|+||.+ ++.||||.|++||+|+|++|.+|+|++-+++.+| T Consensus 398 vEVfhs~F~plE~~~p~r~~~iraqkdeydldvs~~CyaK~VC~~~e~~rv~GfH~vGPNAgEV~QG~A~Alr~g~~k~d 477 (513) T TIGR01438 398 VEVFHSEFTPLEYSVPSRKDSIRAQKDEYDLDVSSKCYAKVVCLKDEDERVVGFHFVGPNAGEVTQGYAVALRVGVKKKD 477 (513) T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHH T ss_conf 79972013650489753566310123211222268514999832146872799975377625788898878754761466 Q ss_pred HHCCCCCCCCHHHHHH Q ss_conf 9637843778899999 Q gi|254781053|r 438 LARICHAHPTMSEAVR 453 (466) Q Consensus 438 l~~~~~~hPt~~E~l~ 453 (466) |..+|.+||+.+|.|. T Consensus 478 ldntIgIHP~~aE~F~ 493 (513) T TIGR01438 478 LDNTIGIHPVSAEEFV 493 (513) T ss_pred HCCCCEECCCCHHCEE T ss_conf 2062300567710000 No 27 >KOG0405 consensus Probab=100.00 E-value=0 Score=652.91 Aligned_cols=444 Identities=30% Similarity=0.466 Sum_probs=406.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC-CCCCCCH Q ss_conf 331999989866899999999879939999379971502513667370989999999999998667558164-7753289 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI-ASCHLDL 80 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~-~~~~~d~ 80 (466) .||..+||||.+|+.+|++++++|.+|.|+|..-.+||||+|+||+|+|.||+++.... ..+++.+|||.. ...++|| T Consensus 20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~-~~~da~~yG~~~~~~~~fdW 98 (478) T KOG0405 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSE-EMEDAKDYGFPINEEGSFDW 98 (478) T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHH-HHHHHHHCCCCCCCCCCCCH T ss_conf 23669984786136776778753853799863778674478604564136774445567-75456642985344467767 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 99999999999987777787640043101100111002221023575211-23221000046766524445766532100 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) +.+.+.++..+.+++.-|+..+.+.+|+++.|+|+|+++++++|+-.++. ..|++++++||||++|. +|.++ ..+ T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp---G~E 174 (478) T KOG0405 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP---GAE 174 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC-CCCCC---CHH T ss_conf 99875116899988789885423154069962678758994479953881578721408997378467-89998---523 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 24530574111111333210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) .-++||.+|+|+++|+|++|+|+||||+|||.+|+.||++++|+.|.+.+|+.||+++++.+.+.|+..||++|.++.++ T Consensus 175 ~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~ 254 (478) T KOG0405 175 LGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVT 254 (478) T ss_pred HCCCCCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHHCCEEECCCCCCE T ss_conf 14166423141116851799746458877555775348703799961213303418889889987640452641455402 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) ++.+.+++..+.....+ ..-.+|.+|||+||.||+.+|+||+.|++++++|.|+||+|.+||+|+|||+||++|... T Consensus 255 ~v~K~~~g~~~~i~~~~---~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~ 331 (478) T KOG0405 255 KVIKTDDGLELVITSHG---TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN 331 (478) T ss_pred EEEECCCCCEEEEEECC---CCCCCCEEEEEECCCCCCCCCCCHHCCEEECCCCCEEEECCCCCCCCCEEEECCCCCCEE T ss_conf 35652787258997246---040354799871578774556622103066788988974222478872587303338474 Q ss_pred CCCEECCCCCCEEECCCC--CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCHHHHCCCCCE Q ss_conf 443000123201201112--2222223333221000144551001478886234--665899996044703441889833 Q gi|254781053|r 320 LAHKAEDEGIAVAEIISG--QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGRARSMNSIDG 395 (466) Q Consensus 320 l~~~A~~~g~~aa~~i~~--~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~ra~~~~~~~g 395 (466) |+|+|.++|+..++.+|+ ++.+.||.++|++||++|+++.|||||+||-++. .+++|+...|.+...+......+. T Consensus 332 LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt 411 (478) T KOG0405 332 LTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKT 411 (478) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCE T ss_conf 30188764026777761689888666023866897058753125777999987275655898247742676763687642 Q ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH Q ss_conf 8999997899869999998299889999999999878987899637843778899999 Q gi|254781053|r 396 FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR 453 (466) Q Consensus 396 ~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~ 453 (466) +.||||..++.+++|.|++|+++.|++|.+++|+++|+|..|+..++.+|||.+|.|- T Consensus 412 ~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElV 469 (478) T KOG0405 412 LMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELV 469 (478) T ss_pred EEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHCCCEEECCCCHHHHE T ss_conf 7999996687717899974598489973344110027544310451234677778823 No 28 >KOG4716 consensus Probab=100.00 E-value=0 Score=580.13 Aligned_cols=447 Identities=28% Similarity=0.439 Sum_probs=389.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--------CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC Q ss_conf 331999989866899999999879939999379--------971502513667370989999999999998667558164 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE--------KTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI 73 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~--------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~ 73 (466) +||++|||||.+|++||.+++.+|++|+++|-- .-+||||+|+||||+|.|..+ .+..+..+++..|||+. T Consensus 19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQA-allG~al~da~kyGW~~ 97 (503) T KOG4716 19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQA-ALLGEALHDARKYGWNV 97 (503) T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHHHHCCCC T ss_conf 74479986885136677998860870799961245788874555854665365318988888-87778877788628777 Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC Q ss_conf 77--532899999999999998777778764004310110011100222102357521-123221000046766524445 Q gi|254781053|r 74 AS--CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLP 150 (466) Q Consensus 74 ~~--~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP 150 (466) .+ .+.||..+.+..++.++.+++.++..+...+|+++++.+.|++++++..++.++ ++.++++++|||||-||+. | T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY-p 176 (503) T KOG4716 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY-P 176 (503) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEEEECCEEEEEECCCCCC-C T ss_conf 623355468999999987766235258987310101356021454266258985477845786145389972687789-9 Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 76653210024530574111111333210123445433201322012201110000111221222211222222222222 Q gi|254781053|r 151 GMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGM 230 (466) Q Consensus 151 ~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV 230 (466) + ++.+.++.+||||+|.+...|.+.+|||+||+++|+|.+|+.||-+||+..|+ -+|++||+++++.+.+.|++.|| T Consensus 177 ~--IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gi 253 (503) T KOG4716 177 D--IPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGI 253 (503) T ss_pred C--CCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCEEEEEE-EECCCCCHHHHHHHHHHHHHHCC T ss_conf 9--99842521123321055689994489745134542135675338885799987-41025269999999999997097 Q ss_pred CCCCCHHHHHHHCCCCCC-EEEEEEECC-CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCCCCCCEEECCC Q ss_conf 232200234420146872-169997213-3211000002320453121036784000012676-4223337763330268 Q gi|254781053|r 231 NFQLNSKVSSVKKVKGKA-QVVYRSTDD-EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEIGGQFQTSIST 307 (466) Q Consensus 231 ~i~~~~~v~~i~~~~~~~-~v~~~~~~g-~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~vd~~~~Ts~p~ 307 (466) ++...+.+.++++.+++. .|..++.+. +..+-++|.|+||+||.|+++.|||+++|++.++ .|.|.+|+.-+||+|+ T Consensus 254 kf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~ 333 (503) T KOG4716 254 KFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPY 333 (503) T ss_pred CEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC T ss_conf 33403353010220477279996125566444102232031224511010038875332532447864457677357871 Q ss_pred CEEECCCC-CCCCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHH-CC-CCEEEEEEEECC Q ss_conf 48702433-35434430001232012011122222-2233332210001445510014788862-34-665899996044 Q gi|254781053|r 308 IYAIGDVV-RGPMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKC-EK-KSYKVGKFPFSA 383 (466) Q Consensus 308 IyA~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~-~~-~~~~v~~~~~~~ 383 (466) |||+||+. +.|.|+|+|.+.|+..|+.+++.... +||..+|++|||..|++.+||||++|-+ .| .+..|....|.+ T Consensus 334 vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P 413 (503) T KOG4716 334 VYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKP 413 (503) T ss_pred EEEECCEECCCCCCCHHHHHHCHHHHHHHHCCCCEEEECCCCCEEEECCHHCCCCCCCHHHHHHHHCCCCEEEEECCCCC T ss_conf 68850000698656525435356999987468615641267760353430002357777899987186537971103464 Q ss_pred CCHHHHC-CCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH Q ss_conf 7034418-8983389999978-99869999998299889999999999878987899637843778899999 Q gi|254781053|r 384 NGRARSM-NSIDGFVKILANE-KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR 453 (466) Q Consensus 384 ~~ra~~~-~~~~g~~kli~~~-~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~ 453 (466) ..-.... +...+++|.||++ ++.||+|.|++||+|+|.|+.++.|++.++|..+|.+++.+|||.+|.|. T Consensus 414 ~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft 485 (503) T KOG4716 414 LEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFT 485 (503) T ss_pred EEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHEE T ss_conf 388755566771688775313687248989974686367778899999825539877521460665343326 No 29 >PRK09564 coenzyme A disulfide reductase; Reviewed Probab=100.00 E-value=0 Score=538.54 Aligned_cols=404 Identities=25% Similarity=0.290 Sum_probs=308.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 9331999989866899999999879--9399993799715-025136673709899999999999986675581647753 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYG-GTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~G-GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) || |||||+||||++||.++++++ .+|+++|+++.++ +.| |+|.. .. -... T Consensus 1 Mk--vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp~~-----------~~-------~~~~--- 53 (443) T PRK09564 1 MK--IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLPYF-----------VG-------GFFD--- 53 (443) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHHHH-----------HC-------CCCC--- T ss_conf 96--9999960999999999981493999999948898777655----20344-----------40-------5558--- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEE--CCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCC Q ss_conf 289999999999999877777876400431011001-110--022210235752112--322100004676652444576 Q gi|254781053|r 78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARI--VSNNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGM 152 (466) Q Consensus 78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~--~~~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~ 152 (466) +...++.+. . ..+++.++++..++ ..- .+.+++.+......+ +++||++||||||+|+.+|.. T Consensus 54 -~~~~~~~~~-------~----~~~~~~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs~p~~p~i~ 121 (443) T PRK09564 54 -DPNNMIART-------P----EEFIKSGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK 121 (443) T ss_pred -CHHHHHHHC-------H----HHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCC T ss_conf -989987419-------9----9999879999938889999746864899846876166134678999616752369988 Q ss_pred CCCCCCEEEEE---ECCCCCCCC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCC Q ss_conf 65321002453---057411111-----1333210123445433201322012201110000111221-22221122222 Q gi|254781053|r 153 SIDFDEQVIVS---STGALSFSS-----VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLK 223 (466) Q Consensus 153 ~~~~~~~~~~t---~~~~~~l~~-----~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~ 223 (466) .... ..+++ .+|+..+++ .||+++|||||+||+|+|++|+++|++||++++++++|+. +|+++++.+++ T Consensus 122 g~~~--~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~ 199 (443) T PRK09564 122 NINL--ENVYTLRSMEDGLALKKLLKKKEIKRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEE 199 (443) T ss_pred CCCC--CCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 7566--66567657899999999765127965999997099999999998669889999957834556678999999999 Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE Q ss_conf 22222222322002344201468721699972133211000002320453121036784000012676422333776333 Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT 303 (466) Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T 303 (466) .|+++||++++++.+++++..++...+. ..+ .++++|.||+|+|++||++.| + ..+.++++|+|.||++||| T Consensus 200 ~l~~~gv~i~~~~~v~~i~~~~~~~~v~--~~~---~~i~~D~vi~a~G~~Pn~~~l--~-~~~~~~~~g~I~Vde~~~T 271 (443) T PRK09564 200 ELREKGVELHTSEFVKSLIGEDKVEGVV--TNK---GEYEADVVILSTGIKPNTEFL--E-DQLKTLKNGAIIVDEYGET 271 (443) T ss_pred HHHHCCCEEEECCEEEEEEECCCEEEEE--ECC---CEEEEEEEEECCCCCCCHHHH--H-CCCEECCCCEEEECCCCCC T ss_conf 9997797999899899999269899999--779---889723899955885350787--6-2842034997986898027 Q ss_pred ECCCCEEECCCCC-------C---CCCCCEECCCCCCEEECCCCCCCCCC-CCCCCCCEEEHHHHHHHHHCHHHHHHCCC Q ss_conf 0268487024333-------5---43443000123201201112222222-33332210001445510014788862346 Q gi|254781053|r 304 SISTIYAIGDVVR-------G---PMLAHKAEDEGIAVAEIISGQKGHVN-YGIIPSVVYTHPEVASIGKTEEQLKCEKK 372 (466) Q Consensus 304 s~p~IyA~GDv~g-------~---~~l~~~A~~~g~~aa~~i~~~~~~~~-~~~ip~~vft~peia~vGlte~~a~~~~~ 372 (466) |+|+|||+|||+. . .+|+|.|.+||+++++|+++++.++. +...|++.|++||+|+|||||+||++.|+ T Consensus 272 s~~~IyA~GD~~~~~~~~~~~~~~~~l~~~A~~~g~iaa~n~~g~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~g~ 351 (443) T PRK09564 272 SIENIYSAGDCATVYNIVSGKNVYVPLATTANKLGRIVGENLAGKDVYFKGTLGSACIKVLSLEAARTGLTEEEAKKLGI 351 (443) T ss_pred CCCCEEEEECCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCHHHHHHCCC T ss_conf 88999999657310355578856865478899998999986059974667866665899947602420188999997799 Q ss_pred CEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCCC-CCHHH Q ss_conf 658999960447034418898338999997899869999998299-8899999999998789878996378437-78899 Q gi|254781053|r 373 SYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICHAH-PTMSE 450 (466) Q Consensus 373 ~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~~h-Pt~~E 450 (466) ++++..... .+.+++..+.++||+||++|++|++|||+|++|++ |+|+||.+++||++++|++||+.+.|.| |++|+ T Consensus 352 ~~~~~~~~~-~~~~~~~~~~~~~~~Kli~d~~t~~IlGa~ivg~~~a~e~I~~~a~AI~~~~tv~dL~~~~~ay~P~~s~ 430 (443) T PRK09564 352 DYKTVFIKD-KNHTNYYPGQEDIYVKLIYEAETKVLLGGQIIGKKGAVLRINALAVAITSKMTTQELGMMDFCYAPPFSR 430 (443) T ss_pred CEEEEEECC-CCHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC T ss_conf 769999667-8756527899739999999999898999999997349999999999998799799995586557999885 Q ss_pred HHHH Q ss_conf 9999 Q gi|254781053|r 451 AVRE 454 (466) Q Consensus 451 ~l~~ 454 (466) .+.. T Consensus 431 ~~d~ 434 (443) T PRK09564 431 TWDA 434 (443) T ss_pred CHHH T ss_conf 3429 No 30 >PRK13512 coenzyme A disulfide reductase; Provisional Probab=100.00 E-value=0 Score=503.35 Aligned_cols=399 Identities=21% Similarity=0.317 Sum_probs=296.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 9331999989866899999999879--939999379971502513667-3709899999999999986675581647753 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGC-IPSKALLHASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GC-iPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) || .+||||+|+||++||.++++++ .+|++||+++.+. +..| +|. .+ .... T Consensus 1 M~-kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~----y~~~~lp~-----------~~-----------~~~~ 53 (438) T PRK13512 1 MP-KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPY-----------VI-----------GEVV 53 (438) T ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCHHHH-----------HH-----------CCCC T ss_conf 98-0999898499999999999439199999996899888----76236679-----------87-----------7886 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCC Q ss_conf 289999999999999877777876400431011001-1100--22210235752112--322100004676652444576 Q gi|254781053|r 78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGM 152 (466) Q Consensus 78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~ 152 (466) -+...++.+. -+.+.+..+|++..++ ..-+ ..+++.+......+ ++.||+|||||||+|+. |+. T Consensus 54 ~~~~~~~~~~----------~~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs~p~~-~g~ 122 (438) T PRK13512 54 EDRKYALAYT----------PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF 122 (438) T ss_pred CCHHHHHCCC----------HHHHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCCCCCC-CCC T ss_conf 6524322069----------89999877979992768999806667899950666742321345899967988876-687 Q ss_pred CCCCCCEE-EEEECCCCCCCC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65321002-453057411111-----133321012344543320132201220111000011122122221122222222 Q gi|254781053|r 153 SIDFDEQV-IVSSTGALSFSS-----VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMS 226 (466) Q Consensus 153 ~~~~~~~~-~~t~~~~~~l~~-----~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~ 226 (466) + .++.. +.+.+|+..+++ .+|+++|||||+||+|+|..|+++|++||++++++++++.+|+++++.+++.|+ T Consensus 123 ~--~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~ 200 (438) T PRK13512 123 E--SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELD 200 (438) T ss_pred C--CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 8--99879979999999999988617997799989558999999999972990899993573120049999999999998 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC Q ss_conf 22222322002344201468721699972133211000002320453121036784000012676422333776333026 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSIS 306 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p 306 (466) ++||++++++++++++.. .+++.+ | ..+++|.|++|+|++||++. ++..|++++++|+|+||++||||+| T Consensus 201 ~~gv~~~~~~~v~~i~~~----~v~~~~--g--~~~~~D~vi~a~G~~Pn~~~--~~~~gi~~~~~G~I~Vd~~~~Ts~~ 270 (438) T PRK13512 201 KREIPYRLNEEIDAINGN----EITFKS--G--KVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVP 270 (438) T ss_pred HCCCEEEECCEEEEEECC----EEEEEE--C--CEEEECEEEEEEECCCCHHH--HHHCCCCCCCCCCEEECCCEECCCC T ss_conf 689999958779999797----999932--8--89740789996710027367--8853876578872987882214899 Q ss_pred CCEEECCCCCC----------CCCCCEECCCCCCEEECCCCCCCCCCCCC--CCCCEEEHHHHHHHHHCHHHHHHCCCCE Q ss_conf 84870243335----------43443000123201201112222222333--3221000144551001478886234665 Q gi|254781053|r 307 TIYAIGDVVRG----------PMLAHKAEDEGIAVAEIISGQKGHVNYGI--IPSVVYTHPEVASIGKTEEQLKCEKKSY 374 (466) Q Consensus 307 ~IyA~GDv~g~----------~~l~~~A~~~g~~aa~~i~~~~~~~~~~~--ip~~vft~peia~vGlte~~a~~~~~~~ 374 (466) ||||+|||+.. .||++.|.+||+++++|+.|.+..-.++. .+.+.|++|++|+|||||+||++.+ + T Consensus 271 ~IyA~GD~a~~~~~~t~~~~~~pla~~A~~~g~iaa~nl~g~~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~~--~ 348 (438) T PRK13512 271 NIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD--Y 348 (438) T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCC--C T ss_conf 99999425673013478753123517889999999998549986666882677789988862699444598871089--6 Q ss_pred EEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCC-CCCHHHHH Q ss_conf 8999960447034418898338999997899869999998299-889999999999878987899637843-77889999 Q gi|254781053|r 375 KVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICHA-HPTMSEAV 452 (466) Q Consensus 375 ~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~~-hPt~~E~l 452 (466) ++.+......++ +..+.+++++||++|++|+||||+|++|++ ++|+||.+++||++++|++||..+-+. +|.+|..+ T Consensus 349 ~~v~~~~~~~~~-~~~~~~~~~~Kli~d~~t~~ILGaqiig~~~~~~~In~la~AI~~~~Tv~dL~~~d~~y~Ppfs~~~ 427 (438) T PRK13512 349 KMVEVTQGAHAN-YYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPK 427 (438) T ss_pred EEEEEECCCCCC-CCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC T ss_conf 199980587613-0799975999999999989899999999756999999999999879979998507273799989850 No 31 >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. Probab=100.00 E-value=0 Score=503.87 Aligned_cols=392 Identities=23% Similarity=0.296 Sum_probs=298.9 Q ss_pred HHHHHHHHCC--CCEEEEECCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999879--939999379971502513667-3709899999999999986675581647753289999999999999 Q gi|254781053|r 16 ACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGC-IPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVE 92 (466) Q Consensus 16 ~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GC-iPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~v~ 92 (466) |||.+++++. .+|+|||+++.+. +..| +| +. .. | ... +.+.++.+ T Consensus 1 saA~~~rrl~p~~eI~vi~~~~~~~----y~~c~lp------------~~---l~--g-~i~----~~~~l~~~------ 48 (427) T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS----FANCGLP------------YV---IG--G-VID----DRNKLLAY------ 48 (427) T ss_pred CHHHHHHHHCCCCCEEEEECCCCCC----CHHHHHH------------HH---HC--C-CCC----CHHHCCCC------ T ss_conf 9779888439899789996799864----3564556------------97---77--7-227----87872167------ Q ss_pred HHHHHHHHHHHCCCEEEEEEE-EEECC--CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCEEEE-EECC Q ss_conf 877777876400431011001-11002--2210235752112--3221000046766524445766532100245-3057 Q gi|254781053|r 93 SNTQGINFLLKKNKIITYHGS-ARIVS--NNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGMSIDFDEQVIV-SSTG 166 (466) Q Consensus 93 ~~~~~~~~~~~~~~V~~~~g~-a~~~~--~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~~~~~~~~~~~-t~~~ 166 (466) .-+.+.++.+|++..++ ..=+| .++|.+......+ ++.||+|||||||+|+.+|....+..+...+ +.+| T Consensus 49 ----~~e~~~~~~~I~v~~~~~V~~ID~~~k~V~~~~~~~~~~~~~~YDkLiiATGs~p~~p~i~g~~~~~V~~lr~~~D 124 (427) T TIGR03385 49 ----TPEKFIEKRGIDVKTNHEVIKVNDERQTVVVKNNKTNETYEESYDYLILSPGASPIIPNIEGINLDITFTLRNLED 124 (427) T ss_pred ----CHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCHHH T ss_conf ----9899998789499918979999899999999667989664457899999769985679999867898899799999 Q ss_pred CCCCC-----CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 41111-----1133321012344543320132201220111000011122-12222112222222222222322002344 Q gi|254781053|r 167 ALSFS-----SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-GMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 167 ~~~l~-----~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) +..++ ..|++++|||||+||+|+|+.|+++|++||++++++++|+ .+|+++++.+++.|+++||++++++.+++ T Consensus 125 a~~i~~~l~~~~~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 204 (427) T TIGR03385 125 TDAIKQYIDANKVDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDS 204 (427) T ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEE T ss_conf 99999987507998899999639999999999976998999984683365548999999999999975979997988999 Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC--- Q ss_conf 20146872169997213321100000232045312103678400001267642233377633302684870243335--- Q gi|254781053|r 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG--- 317 (466) Q Consensus 241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~--- 317 (466) ++..+ ..+.+. ++ .++++|.|++|+|++||++. ++++|++++++|.|+||++||||+|+|||+|||+.. T Consensus 205 i~~~~--~~~~l~--~g--~~i~~D~vi~a~G~~Pn~~~--~~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA~GD~a~~~~~ 276 (427) T TIGR03385 205 IIGEE--RVGVIT--SG--GVYQADMVILAIGVKPNSEL--AKDSQLKLGRTGAIWVNEKFQTSVPNIYAAGDVAESKNI 276 (427) T ss_pred EECCC--CEEEEE--CC--CEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEECCCCCCCCCCCEEEEECEEECCCC T ss_conf 98788--789994--69--99972899988774676424--325561665888685276554368999998210411455 Q ss_pred -------CCCCCEECCCCCCEEECCCCCCCCCC-CCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHH Q ss_conf -------43443000123201201112222222-3333221000144551001478886234665899996044703441 Q gi|254781053|r 318 -------PMLAHKAEDEGIAVAEIISGQKGHVN-YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARS 389 (466) Q Consensus 318 -------~~l~~~A~~~g~~aa~~i~~~~~~~~-~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~ 389 (466) .+|++.|.+||+++++|++|++.++. +...|.++|++||+|+|||||+||++.|+++++..+.....++ .. T Consensus 277 ~t~~~~~~~l~~~A~~qgriaa~ni~g~~~~~~~~~~~~~~~~~~~~iA~vGlTE~eA~~~g~~~~~~~~~~~~~~~-~~ 355 (427) T TIGR03385 277 VTKKPAWIPLAWGANKMGRIVGENIAGNDIEFKGTLGTSITKFFDLTIASTGVTENEAKRLNIDYKTVFVKAKTHAN-YY 355 (427) T ss_pred CCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCHHH-HC T ss_conf 56884234156899999999999745998677886676689988925599738499998779987999986687276-54 Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHH Q ss_conf 8898338999997899869999998299-88999999999987898789963784-377889999 Q gi|254781053|r 390 MNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAV 452 (466) Q Consensus 390 ~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l 452 (466) .+.+++++||++|++|+||||+|++|++ ++++||.+++||++++|++||+++-+ +||+++..+ T Consensus 356 ~~~~~~~vKli~d~~t~rILGaqiiG~~~a~~~I~~la~AI~~g~Tv~dL~~~d~~y~P~f~~~~ 420 (427) T TIGR03385 356 PGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVW 420 (427) T ss_pred CCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC T ss_conf 79986899999999989899899998721999999999999879979998468465799999861 No 32 >TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction:NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport. Probab=100.00 E-value=0 Score=486.25 Aligned_cols=441 Identities=27% Similarity=0.470 Sum_probs=386.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC Q ss_conf 31999989866899999999879-9399993799--------71502513667370989999999999998667558164 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEK--------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI 73 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~--------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~ 73 (466) ||+||||+|.+|+.|.+.++.+- ++|++||-.. .+||||+|+||+|+|.|+..++..+.+ +....|||+. T Consensus 4 ~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~-resaGfGWe~ 82 (486) T TIGR01423 4 YDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTL-RESAGFGWEL 82 (486) T ss_pred EEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHH-HHHCCCCEEC T ss_conf 578998247774100101233210316899842247993000108726872343630011005788888-7623764000 Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCC-----CCCCCCEEECCCCCCC Q ss_conf 77--53289999999999999877777876400-4310110011100222102357521-----1232210000467665 Q gi|254781053|r 74 AS--CHLDLKKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSNNKILVKGSSS-----EETIEAKNIVIATGSE 145 (466) Q Consensus 74 ~~--~~~d~~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~~-----~~~i~ad~iviATGs~ 145 (466) .. .+.+|+.++.-++.-+....+.++.++++ .|.+++.|++.+.+.+++.|+.... .+++.+++++|||||- T Consensus 83 d~~~~~~nWk~liaakn~av~~in~sye~mf~dteGl~f~~G~Gal~~~~~v~vre~adP~s~v~e~l~~e~i~~atGsW 162 (486) T TIGR01423 83 DAESVKANWKALIAAKNKAVLDINDSYEDMFKDTEGLEFFLGFGALEDKNVVLVRESADPKSKVKERLDAEYILLATGSW 162 (486) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCC T ss_conf 32454466789998766777767655777741024402220112001475799962788525786510433599971677 Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC---CCCHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 244457665321002453057411111133321012344543320132201---22011100001112212222112222 Q gi|254781053|r 146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRL---GSCVKIIEHSGTILNGMDKEIAAHCL 222 (466) Q Consensus 146 p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~l---G~~Vtli~~~~~ll~~~d~~~~~~~~ 222 (466) |..+. .+. ...+++|+++|.|++.|+|++.+|||||.+|||.+|+.+ |-+|+|.+|.+.+|++||.++.+.+. T Consensus 163 Pq~l~---i~G-~~~Ci~sneafyl~e~P~r~l~vGGG~is~efaGifnayk~~GG~v~l~yr~~~ilrGfd~~lr~~lt 238 (486) T TIGR01423 163 PQMLK---IEG-IELCISSNEAFYLEEAPKRVLTVGGGYISVEFAGIFNAYKAVGGKVDLAYRNDMILRGFDSELRKELT 238 (486) T ss_pred CCCCC---CCC-CCEEEECCCCEECCCCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCEEEECCCHHHHHHHH T ss_conf 32003---566-42033023201004788548986474799862001232315797589987387033032278999999 Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 22222222232200234420146872-16999721332110000023204531210367840000126764223337763 Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466) Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466) ++|..+||++.++..+.+++...++. .+++..+ .+++.|.|++|+||.|+++.|.|+++|+++.++|.|.||+|. T Consensus 239 ~ql~anGi~~~t~enP~k~~~n~dG~~hv~fesG----~~~d~dvvm~aiGr~Pr~~~lql~~~Gv~~~~~Gai~vd~~s 314 (486) T TIGR01423 239 KQLVANGIDVRTNENPAKVEKNADGSKHVVFESG----KELDVDVVMLAIGRLPRSQTLQLDKVGVELADKGAIKVDEYS 314 (486) T ss_pred HHHHHCCCEEEECCCCHHEEECCCCCEEEEECCC----CCCCEEEEEEEECCCCCCCEEEEECCCEEEECCCCEEECCHH T ss_conf 8876266136644770011007898446886267----733401788762367764313400003011137644430000 Q ss_pred EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC-CCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEE Q ss_conf 3302684870243335434430001232012011122-222223333221000144551001478886234665899996 Q gi|254781053|r 302 QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ-KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFP 380 (466) Q Consensus 302 ~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~-~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~ 380 (466) +|+++||||+||++++.+|+|+|..+|....+.+++. ++..|+..+..++|+.|+++.+|++|++|.+....+.|+... T Consensus 315 ~tnv~niyaiGdvt~r~mltPvaineGa~~vdt~f~~kPr~tdht~va~avfsiPP~G~CG~~ee~aak~~~~vavy~s~ 394 (486) T TIGR01423 315 KTNVDNIYAIGDVTDRVMLTPVAINEGAAVVDTVFASKPRKTDHTKVASAVFSIPPIGVCGLVEEEAAKKYEKVAVYLSS 394 (486) T ss_pred CCCCCCEEEECCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEEHH T ss_conf 04633135520213605762232015640101322378875433122445550587640354201553202002222011 Q ss_pred ECCCCHHHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH Q ss_conf 044703441889-833899999789986999999829988999999999987898789963784377889999 Q gi|254781053|r 381 FSANGRARSMNS-IDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV 452 (466) Q Consensus 381 ~~~~~ra~~~~~-~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l 452 (466) |.++-....-.. .+-.+|++.+..+|.++|.|++|+...|+|+.++++|+.+..+.|+-+++..|||.+|.| T Consensus 395 ftPlmhnisGs~ykkf~~~i~t~h~dG~v~Gvh~lGdssPeiiq~v~iC~k~~akisdfyntiGvhPtsaeel 467 (486) T TIGR01423 395 FTPLMHNISGSKYKKFVVKIVTDHADGEVLGVHLLGDSSPEIIQAVAICLKLNAKISDFYNTIGVHPTSAEEL 467 (486) T ss_pred CCHHHHHCCCCHHHEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHH T ss_conf 0002321242014213233343058860899997448876688764432210450102321035565664554 No 33 >PRK04965 nitric oxide reductase; Provisional Probab=100.00 E-value=0 Score=356.19 Aligned_cols=356 Identities=20% Similarity=0.280 Sum_probs=250.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 93319999898668999999998799--3999937997150251366737098999999999999866755816477532 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |+=-|||||+|+||++||.++++++. +++||++++.. .+.-|+-|+.|.. + . T Consensus 1 M~~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~----~Y~rp~Ls~~~~~---------------~----~--- 54 (378) T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNKPDLSHVFSQ---------------G----Q--- 54 (378) T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC----CCCCCCCHHHHCC---------------C----C--- T ss_conf 989999998829999999999711949869999899998----8767816698828---------------9----9--- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 89999999999999877777876400431011001-11002221023575211232210000467665244457665321 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) +...+.. .....+.++.+|++..+. ..-+|...-.|..+ .+++.||++||||||+|+.+|... . T Consensus 55 ~~~~l~~----------~~~~~~~~~~~I~l~~~~~V~~ID~~~k~V~~~--g~~~~YDkLVLATGa~p~~ppi~G---~ 119 (378) T PRK04965 55 RADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQ--GNQWQYDKLVLATGASAFVPPVPG---R 119 (378) T ss_pred CHHHHHC----------CCHHHHHHHCCEEEECCCEEEEECCCCCEEEEC--CCEEECCEEEEECCCCCCCCCCCC---C T ss_conf 9689531----------798999874897998698999984646379958--919846879993588755789999---6 Q ss_pred CEEEEEECCCCC---CC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCC Q ss_conf 002453057411---11---11333210123445433201322012201110000111221-222211222222222222 Q gi|254781053|r 158 EQVIVSSTGALS---FS---SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGM 230 (466) Q Consensus 158 ~~~~~t~~~~~~---l~---~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV 230 (466) ..+++.+++.+ ++ ...++++|||||+||+|+|..|+..|.+||++++.+++|++ +|+++++.+++.|+++|| T Consensus 120 -~~v~tlr~l~d~~~~~~~l~~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~~~~~l~~~l~~~GV 198 (378) T PRK04965 120 -ELMLTLNSQQEYRACETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGV 198 (378) T ss_pred -EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCE T ss_conf -4799819999999999775149789998983889999999996798899976667442211789999999999997890 Q ss_pred CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEE Q ss_conf 23220023442014687216999721332110000023204531210367840000126764223337763330268487 Q gi|254781053|r 231 NFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYA 310 (466) Q Consensus 231 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA 310 (466) ++++++.+++++..+++..+.+.+ | .++++|.|++|+|.+||++. ++.+|++++ +| |.||++||||.||||| T Consensus 199 ~~~~~~~v~~i~~~~~~~~v~l~d--G--~~i~aD~Vv~a~Gv~Pnt~l--a~~aGl~~~-~G-I~Vd~~l~TS~p~IyA 270 (378) T PRK04965 199 HLLLKSQLQGLEKTESGIRATLDD--G--RSIEVDAVIAAAGLRPNTAL--ARRAGLAVN-RG-ICVDSYLQTSAPDIYA 270 (378) T ss_pred EEEECCEEEEEEECCCEEEEEECC--C--CEEECCEEEECCCCCCCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCEEE T ss_conf 999698899999659989999859--9--79984999989477548278--986698669-98-8999998549999999 Q ss_pred ECCCCCC----CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEE-HHHHHHHHHCHHHHHHCCCCEEEEEEEECCCC Q ss_conf 0243335----434430001232012011122222223333221000-14455100147888623466589999604470 Q gi|254781053|r 311 IGDVVRG----PMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYT-HPEVASIGKTEEQLKCEKKSYKVGKFPFSANG 385 (466) Q Consensus 311 ~GDv~g~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft-~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ 385 (466) +|||+.. +++..-++.|++++|++|.|.+.++.+...|..+-| ..++...|-+..+ + . T Consensus 271 ~GDcAe~~g~~~~~v~p~~~~a~~lA~~l~G~~~~~~~~~~~~~~K~~~~~i~~~g~~~~~------~-----------~ 333 (378) T PRK04965 271 LGDCAEINGQVLPFLQPIQLSANALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ------D-----------L 333 (378) T ss_pred EEEEEEECCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEECCCCCCC------C-----------C T ss_conf 8752898999750289999999999997079985310487358985068512864788899------8-----------4 Q ss_pred HHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHH Q ss_conf 344188983389999978998699999982998899999 Q gi|254781053|r 386 RARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHE 424 (466) Q Consensus 386 ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~ 424 (466) ......+.+|..+.++++ +++|+|+-++|..+.+-..+ T Consensus 334 ~~~~~~~~~g~~~~~~~~-~g~l~G~vl~Gd~~~~~~~l 371 (378) T PRK04965 334 RWQINAESQGMVAKAFDE-AGQLRGFVVSEDRMKEAFPL 371 (378) T ss_pred EEEEEECCCCEEEEEECC-CCCEEEEEEECHHHHHHHHH T ss_conf 399995599808999946-99699999978888877788 No 34 >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Probab=100.00 E-value=5.6e-45 Score=345.92 Aligned_cols=365 Identities=18% Similarity=0.201 Sum_probs=247.7 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 93-319999898668999999998799--399993799715025136673709899999999999986675581647753 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) |+ ++|||||+|+||++||..+++.|. +++||++++.+ .+.-|.=||.++.. .. T Consensus 1 M~~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~----PY~Rp~Lsk~~l~~------------------~~-- 56 (400) T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL----PYERPPLSKSMLLE------------------DS-- 56 (400) T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC----CCCCHHCCHHHHCC------------------CC-- T ss_conf 9967299997759999999999806949979999899999----88651073998769------------------97-- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC Q ss_conf 289999999999999877777876400431011001-1100222102357521123221000046766524445766532 Q gi|254781053|r 78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDF 156 (466) Q Consensus 78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~ 156 (466) +... .+. -..++++.+|++..|. +.-++...-.|...++ +++.||++|||||++|+.+|..+... T Consensus 57 ---~~~~--------~l~--~~~~y~~~~I~l~~g~~v~~id~~~~~V~l~~g-~~~~YD~LviATGa~p~~lp~~~~~~ 122 (400) T PRK09754 57 ---PQLQ--------QVL--PANWWQENNVHLHSGVTIKTLGRDTRELVLTNG-ESWHWDQLFIATGAAARPLPLLDALG 122 (400) T ss_pred ---HHHH--------HCC--CHHHHHHCCCEEECCCEEEEECCCCCEEEECCC-CEEECCEEEECCCCCCCCCCCCCCCC T ss_conf ---2443--------248--987998789699889889997188988998799-88872605887788875689988888 Q ss_pred CCEEEE-EECCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCC Q ss_conf 100245-3057411111---1333210123445433201322012201110000111221-2222112222222222222 Q gi|254781053|r 157 DEQVIV-SSTGALSFSS---VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMN 231 (466) Q Consensus 157 ~~~~~~-t~~~~~~l~~---~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV~ 231 (466) ++...+ |.+|+..+++ ..++++|||||+||+|+|..++++|.+||++++.+++|++ +++++++.+.+.++++||+ T Consensus 123 ~~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~ 202 (400) T PRK09754 123 ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVR 202 (400) T ss_pred CCEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 99899779999999998761587399988558999999999975994899953463410026989999999999978989 Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE Q ss_conf 32200234420146872169997213321100000232045312103678400001267642233377633302684870 Q gi|254781053|r 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI 311 (466) Q Consensus 232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~ 311 (466) +++++.++++.. ++.. .+...+| .++++|.|++++|.+||++. ++.+|++.+ |.|.||++||||.|+|||+ T Consensus 203 ~~~~~~v~~~~~-g~~~--~v~l~~G--~~l~aD~VivaiGv~Pnt~l--a~~agL~~~--~GI~VD~~~~Ts~p~IyAa 273 (400) T PRK09754 203 ILLNNAIEHVVD-GEKV--ELTLQSG--ETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAG 273 (400) T ss_pred EEECCEEEEEEC-CCEE--EEEECCC--CEEECCEEEECCCCCCCHHH--HHHCCCCCC--CEEEECCCCCCCCCCEEEE T ss_conf 995875899978-9779--9998689--99985899989767537589--987799759--9399997876489899999 Q ss_pred CCCCCCCC-------C--CCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEH---HHHHHHHHCHHHHHHCCCCEEEEEE Q ss_conf 24333543-------4--4300012320120111222222233332210001---4455100147888623466589999 Q gi|254781053|r 312 GDVVRGPM-------L--AHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTH---PEVASIGKTEEQLKCEKKSYKVGKF 379 (466) Q Consensus 312 GDv~g~~~-------l--~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~---peia~vGlte~~a~~~~~~~~v~~~ 379 (466) |||+..+. + .+.|..||++||+||.|.+.++ ..+||. ||+ -.+-.+|.+. +.+.. .+- T Consensus 274 GDvA~~~~~~g~~~r~e~w~~A~~qg~~aa~nm~G~~~~~--~~~P~f-wsdq~~~~lq~~G~~~------~d~~~-~~g 343 (400) T PRK09754 274 GDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPL--LPPPWF-WSDQYSDNLQFIGDMR------GDDWL-CRG 343 (400) T ss_pred ECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCE-EEHHCCCCEEEEECCC------CCEEE-EEE T ss_conf 5520354888888772365788899999999842999887--899847-7011598649986799------97599-982 Q ss_pred EECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH Q ss_conf 604470344188983389999978998699999982998899999999998789878 Q gi|254781053|r 380 PFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSE 436 (466) Q Consensus 380 ~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~ 436 (466) + .+...|+.+++ + +++++|+-.++. ..-+....-+|+.+.+++ T Consensus 344 d----------~~~~~~~~~~~-~-~~~lv~~~~~n~--~~~~~~~r~li~~~~~~~ 386 (400) T PRK09754 344 N----------PETQKAIWFNL-Q-NGVLIGAVTLNQ--GREIRPIRKWIQSGKTFD 386 (400) T ss_pred C----------CCCCEEEEEEE-E-CCEEEEEEEECC--HHHHHHHHHHHHCCCCCC T ss_conf 2----------79975999998-1-998999998688--389999999997887889 No 35 >TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm. Probab=100.00 E-value=1.9e-42 Score=327.57 Aligned_cols=291 Identities=27% Similarity=0.376 Sum_probs=209.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 319999898668999999998799399993799715---02513667370989999999999998667558164775328 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG---GTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) |||+||||||||++||++++|.+++++|||+.. .| |.=.. + ..+ .+.+ |. ...+. T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~-~G~aGGql~~-----------T----~~v-ENYP--Gf---~e~i~ 58 (321) T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGME-PGIAGGQLTT-----------T----TEV-ENYP--GF---PEGIS 58 (321) T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCC-CCCCCCCCCC-----------C----CEE-ECCC--CC---CCCCC T ss_conf 928998478678889999887467278983577-7745553332-----------2----065-1368--68---88766 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEE-ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--C-CCCC Q ss_conf 9999999999999877777876400-43101100111-0022210235752112322100004676652444--5-7665 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSAR-IVSNNKILVKGSSSEETIEAKNIVIATGSEASGL--P-GMSI 154 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~-~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P-~~~~ 154 (466) -..+++..++...++-. .... ..|..+.-..+ +- +..+.|.+. ++|++|.+|||||++++++ | +. . T Consensus 59 G~~L~~~M~~Qa~~fG~----~~~~G~~v~~v~~~~~~yE-~~~F~~~~~---~~y~a~avIiAtGa~~r~lg~~kGE-~ 129 (321) T TIGR01292 59 GPELMEKMKEQAKKFGA----EIIYGEEVIRVDKSDRAYE-SDPFKVKTG---KEYTAKAVIIATGAEARKLGIPKGE-D 129 (321) T ss_pred HHHHHHHHHHHHHHCCC----CEEECCEEEEEECCCCCCC-CCEEEEEEC---CEEEEEEEEEECCCHHHHCCCCCCH-H T ss_conf 28899999999987067----3662670568633788436-610389717---5688658999138715423788664-5 Q ss_pred CCCCE--EEE-EECC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 32100--245-3057--41111113332101234454332013220122011100001112212222112222222222- Q gi|254781053|r 155 DFDEQ--VIV-SSTG--ALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ- 228 (466) Q Consensus 155 ~~~~~--~~~-t~~~--~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~- 228 (466) ++.++ .++ ++|. .|- +. |+|+|||||..|+|=|.+|++++++||||+|+|.+- ....++++++++ T Consensus 130 ef~GrGVSyCA~CDGA~~ff-k~--K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~fR------A~k~~~~r~~~~~ 200 (321) T TIGR01292 130 EFLGRGVSYCATCDGASPFF-KN--KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKFR------AEKILLDRLKKNP 200 (321) T ss_pred HHCCCCEEEEEHHCCCCHHH-CC--CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC------CCHHHHHHHHHCC T ss_conf 53268666722310540120-59--889998798248888899985387679997798636------3289998998378 Q ss_pred --CCCCCCCHHHHHHHCCC--CCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCCCCCC-- Q ss_conf --22232200234420146--8721699972-1332110000023204531210367840000-12676422333776-- Q gi|254781053|r 229 --GMNFQLNSKVSSVKKVK--GKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIEIGGQ-- 300 (466) Q Consensus 229 --gV~i~~~~~v~~i~~~~--~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~vd~~-- 300 (466) +|+|++|++|++|..++ ....|.+++. ++++.++++|-|++++|..|||+. |+..| +++|+.|+|+||+. T Consensus 201 eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~D~~GyI~t~~~~G 278 (321) T TIGR01292 201 EGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLELDEGGYIVTDEGLG 278 (321) T ss_pred CCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEECCCCCEEECCCCC T ss_conf 98789964868999961783155335899623884889984447898412032057--6507834676998688617548 Q ss_pred --CEEECCCCEEECCCCC--CCCCCCEECCCCCCEEECC Q ss_conf --3330268487024333--5434430001232012011 Q gi|254781053|r 301 --FQTSISTIYAIGDVVR--GPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 301 --~~Ts~p~IyA~GDv~g--~~~l~~~A~~~g~~aa~~i 335 (466) ||||+|+|||||||.+ .+..+-+|.-+|.+||..+ T Consensus 279 n~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a 317 (321) T TIGR01292 279 NTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSA 317 (321) T ss_pred CEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHH T ss_conf 612306686897304406886137678700068999999 No 36 >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Probab=100.00 E-value=2.9e-42 Score=326.13 Aligned_cols=283 Identities=23% Similarity=0.316 Sum_probs=190.6 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCEECCC Q ss_conf 93--31999989866899999999879939999379971502513667---37098999999999999866755816477 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC---IPSKALLHASEMYSHIAKEAGDLGINIAS 75 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC---iPsK~l~~~a~~~~~~~~~~~~~g~~~~~ 75 (466) |. ||+|||||||||++||++++|+|++|++||++. +||+|..... .|...-+...++...+.+++..| T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~-~GGqi~~t~~VeNYPG~~~isG~eL~~~m~~qA~~~------ 73 (555) T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDF------ 73 (555) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHC------ T ss_conf 9844729999956889999999997899679996688-686556368568788877986899999999999977------ Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CC Q ss_conf 532899999999999998777778764004310110011100--22210235752112322100004676652444--57 Q gi|254781053|r 76 CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PG 151 (466) Q Consensus 76 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~ 151 (466) |+++..+...-+ +.....|.+.+ .+|+++.+|||||++|+.+ || T Consensus 74 ------------------------------Gve~~~~~V~~i~~~g~~k~V~t~~--g~~~ak~VIIATGa~pr~LgipG 121 (555) T TIGR03143 74 ------------------------------GVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPG 121 (555) T ss_pred ------------------------------CCEEEEEEEEEEECCCCCEEEEECC--CEEEECEEEECCCCCCCCCCCCC T ss_conf ------------------------------9699965699997379958999889--78996979999999714389997 Q ss_pred CCC-CCCCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCC Q ss_conf 665-32100245-30574111111333210123445433201322012201110000111221222211222222-2222 Q gi|254781053|r 152 MSI-DFDEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI-MSKQ 228 (466) Q Consensus 152 ~~~-~~~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~-l~~~ 228 (466) ... ...+..++ ++|..|. ..|+++|||||.+|+|.|.+|++++++|||++|++.+.. .+.+.+. +... T Consensus 122 E~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~a------~~~~~e~~~~~~ 192 (555) T TIGR03143 122 EEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC------AKLIAEKVKNHP 192 (555) T ss_pred HHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCC------CHHHHHHHHHCC T ss_conf 32216871377403763241---798699983888999999999974890899997875685------899999998579 Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEE------EEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 222322002344201468721699972-133211000------0023204531210367840000126764223337763 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEA------DAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~------D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466) +|++++++++.++..++....+.+.+. +++..++++ |-|++++|+.|||+ |.+.++++|++|+|+||++| T Consensus 193 kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m 269 (555) T TIGR03143 193 KIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDM 269 (555) T ss_pred CEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCC T ss_conf 859997888999986785489999998889789960465667628999979965415---66073258889719739997 Q ss_pred EEECCCCEEECCCCCCC-CCCCEECCCCCCEEEC Q ss_conf 33026848702433354-3443000123201201 Q gi|254781053|r 302 QTSISTIYAIGDVVRGP-MLAHKAEDEGIAVAEI 334 (466) Q Consensus 302 ~Ts~p~IyA~GDv~g~~-~l~~~A~~~g~~aa~~ 334 (466) |||+|||||||||+..+ ...-+|..+|-+||-. T Consensus 270 ~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~ 303 (555) T TIGR03143 270 ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATS 303 (555) T ss_pred CCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHH T ss_conf 0599988988345289877354708757999999 No 37 >PRK12770 putative glutamate synthase subunit beta; Provisional Probab=100.00 E-value=7.3e-42 Score=323.24 Aligned_cols=291 Identities=24% Similarity=0.279 Sum_probs=185.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC-CCCHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775-32899 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASC-HLDLK 81 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~-~~d~~ 81 (466) .+|+|||||||||+||.+|+++|++|+|||+.+. +|.|+++|| |++.+-. +.+.+..+.....|+.+... .+. T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~-~GG~~~~gi-p~~~~p~--~~~~~~~~~l~~~g~~~~~~~~v~-- 91 (350) T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPE-PGGLMVFGI-PEFRIPI--ERVREGVRELEELGVVFHTRTKVY-- 91 (350) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEEEEE-CCCCCCH--HHHHHHHHHHHHHCCEEECCEEEE-- T ss_conf 9899999558899999999978998599953696-982899834-7976668--899999999997097697320998-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCC--CCCCCCCCC Q ss_conf 999999999998777778764004310110011100222102357521123221000046766-52444--576653210 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASGL--PGMSIDFDE 158 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~i--P~~~~~~~~ 158 (466) .. ....... ....+.......+...++|.+|||||+ +|+.+ |+.+.+ T Consensus 92 ---------------------~~--~~~~~~~----~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~l~ipG~~~~--- 141 (350) T PRK12770 92 ---------------------CD--EPPHEEE----GDEFVEDFVSLEELVEEYDAVLIATGTWKSRKLGIPGENLP--- 141 (350) T ss_pred ---------------------EE--CCEEEEE----CCEEEEEEEEHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC--- T ss_conf ---------------------50--2011330----32035776018987741899999658997735898874567--- Q ss_pred EEEEEECC-----------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 02453057-----------411111----133321012344543320132201220-11100001112212222112222 Q gi|254781053|r 159 QVIVSSTG-----------ALSFSS----VPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCL 222 (466) Q Consensus 159 ~~~~t~~~-----------~~~l~~----~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~ 222 (466) .+++..+ ...... .+|+++|||||++|+|+|..|+++|++ |+++.|++... ........ T Consensus 142 -gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~~----~~~~~~~~ 216 (350) T PRK12770 142 -GVYSALEYLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTINE----APAGKYEI 216 (350) T ss_pred -CEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHC----CCCCHHHH T ss_conf -8086478787765343533553446655898899989864567999999975996899996665002----86189999 Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEE----------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEE Q ss_conf 22222222232200234420146872169997----------------21332110000023204531210367840000 Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRS----------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIG 286 (466) Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~----------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g 286 (466) +.+.+.|++++.+..+.++...+....+.+.+ .+++..++++|.||+++|++||++. ++++| T Consensus 217 ~~l~~~gv~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~--~~~~g 294 (350) T PRK12770 217 ERLIERGVEFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPF--KKELG 294 (350) T ss_pred HHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCH--HHHCC T ss_conf 9999769889974522999827967899999988605666774553121374103105789999777788413--54159 Q ss_pred CCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 12676422333776333026848702433354344300012320120111 Q gi|254781053|r 287 INIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 287 i~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) +++|++|+|.||++||||+|||||+|||+++|+++|+|..||+.||.++. T Consensus 295 v~ld~~G~I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~ 344 (350) T PRK12770 295 IELNRDGEIKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIH 344 (350) T ss_pred EEECCCCEEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 12889981986989744899999801687888899999999999999999 No 38 >pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=100.00 E-value=4.5e-40 Score=310.21 Aligned_cols=273 Identities=37% Similarity=0.572 Sum_probs=195.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) ||+||||||||++||.+|+++|++|+|||++ ++.|.+++|+|++.+...... ..+.+... T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~---~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~ 60 (277) T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKE---GGTCYNRGCIPKKLLLEAAEV-----------------GKLDLRPL 60 (277) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEECCCCCCCCCCCCCH-----------------HHHHHHHH T ss_conf 9999997699999999998499979999379---993575577477116454331-----------------45618999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCEE Q ss_conf 99999999987777787640043101100-111002221023575211232210000467665244--457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHG-SARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g-~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~~ 160 (466) ......+++++.+ ....++...-.|...++ ++++||++|||||++|+. +||.+ ..+.. T Consensus 61 ----------------~~~~~~~i~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~ipG~~--~~~~~ 121 (277) T pfam07992 61 ----------------EQYKDEGIEVLLGTGVTAIDKAGKKVTLDDG-KELTYDKLVIATGARPRRPPIPGVE--LDGVF 121 (277) T ss_pred ----------------HHHHHCCCEEEECCEEEEEECCCCEEEECCC-CEEECCEEEECCCCCCCCCCCCCCC--CCCCE T ss_conf ----------------9998759799968779999789998998789-3998599999879986225778744--45623 Q ss_pred EEEECCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 45305741111113-33210123445433201322012201110000111221222211222222222222232200234 Q gi|254781053|r 161 IVSSTGALSFSSVP-KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 161 ~~t~~~~~~l~~~P-~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) +++..+++.++..| ++++|||||++|+|+|..++++|++||++++++++++.++++......+.+...++..+....+. T Consensus 122 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (277) T pfam07992 122 YLTSDDALALREKPKKRVVVVGGGYIGLELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVE 201 (277) T ss_pred ECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEE T ss_conf 23699998756174566999799875999999999729937999865723444478999999999997398999966788 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC Q ss_conf 42014687216999721332110000023204531210367840000126764223337763330268487024333543 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM 319 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~ 319 (466) .......... .....++..++++|.+++++|..|+.. .++..|++++++|+|.||++||||+|||||+|||+++++ T Consensus 202 ~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~g~~~~~~--~~~~~gl~~~~~G~I~vd~~~~Ts~~~VyA~GDva~g~~ 277 (277) T pfam07992 202 VVVEVVEGVV--VKVVLEDGIEADADLVAIGRGPNPNTL--LLEKAGLELDERGYIVVDEYLRTSVPGIYAAGDVAEGRP 277 (277) T ss_pred EEEECCEEEE--EECCCCEEEEEEEEEEEEEEEECCCCC--HHHHCCCCCCCCCCEEECCCCEECCCCEEEEEECCCCCC T ss_conf 9883003689--860565279970899999974158951--377779248899958679297409999999886889999 No 39 >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. Probab=100.00 E-value=6.5e-39 Score=301.77 Aligned_cols=286 Identities=26% Similarity=0.346 Sum_probs=197.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) |||+||||||||++||++++|.|++++||++. +||.+.....| . ...|+ +.+.-.+ T Consensus 213 YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~--~GGqv~~t~~I----------------e--NypG~----~~i~G~e 268 (515) T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGI----------------E--NLISV----PYTTGSQ 268 (515) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCEECCCE----------------E--ECCCC----CCCCHHH T ss_conf 88899896789999999999779976999248--77531303460----------------0--44898----7775799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCC-CC Q ss_conf 9999999999877777876400431011001-1100--22210235752112322100004676652444--57665-32 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PGMSI-DF 156 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~~~~-~~ 156 (466) +.+... ...++.+++++.+. ...+ ......|..+++ ++++++.+|||||++|+.+ ||... .. T Consensus 269 L~~~~~-----------~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~aktVIiATGa~~r~l~vpGE~e~~G 336 (515) T TIGR03140 269 LAANLE-----------EHIKQYPIDLMENQRAKKIETEDGLIVVTLESG-EVLKAKSVIVATGARWRKLGVPGEKEYIG 336 (515) T ss_pred HHHHHH-----------HHHHHCCCEEEECCEEEEEECCCCCEEEEECCC-CEEEECEEEECCCCCCCCCCCCCHHHCCC T ss_conf 999999-----------999974968991336999972798189998799-89993979995698735589996787038 Q ss_pred CCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC Q ss_conf 100245-30574111111333210123445433201322012201110000111221222211222222222-2222322 Q gi|254781053|r 157 DEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQL 234 (466) Q Consensus 157 ~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~ 234 (466) .+..++ ++|..| ++ .|+++|||||..|+|.|.+|+++.++|||++|++.+-. |+ .+++.+++ .+|++++ T Consensus 337 kGVsYCa~CDG~~-fk--gK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~ 407 (515) T TIGR03140 337 KGVAYCPHCDGPF-FK--GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILT 407 (515) T ss_pred CCCCEECCCCCHH-CC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEE T ss_conf 7401001078101-18--97699989977999999999841771699736523343--38----8999998389868997 Q ss_pred CHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC Q ss_conf 00234420146872-1699972-133211000002320453121036784000012676422333776333026848702 Q gi|254781053|r 235 NSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG 312 (466) Q Consensus 235 ~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G 312 (466) ++.++++..+++.+ .+.+++. +++..++++|.|++++|..||++.+ +.. ++++++|+|.||++||||+||||||| T Consensus 408 ~~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~~-v~l~~~G~I~vD~~~~TnvpGVFAAG 484 (515) T TIGR03140 408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAG 484 (515) T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HCH-HCCCCCCEEECCCCCCCCCCCEEEEE T ss_conf 988899987898589999998899977999868999984997662565--151-11079973982998707999879856 Q ss_pred CCCCCCC-CCCEECCCCCCEEECCC Q ss_conf 4333543-44300012320120111 Q gi|254781053|r 313 DVVRGPM-LAHKAEDEGIAVAEIIS 336 (466) Q Consensus 313 Dv~g~~~-l~~~A~~~g~~aa~~i~ 336 (466) ||++.|. ..-+|.-+|..||-..+ T Consensus 485 Dvt~~~~kQi~~A~G~Ga~AAlsA~ 509 (515) T TIGR03140 485 DVTTVPYKQIIIAMGEGAKAALSAF 509 (515) T ss_pred ECCCCCCCEEEEEHHHHHHHHHHHH T ss_conf 6738986678786664799999999 No 40 >PRK10262 thioredoxin reductase; Provisional Probab=100.00 E-value=5.8e-37 Score=287.58 Aligned_cols=290 Identities=21% Similarity=0.275 Sum_probs=193.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 33199998986689999999987993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) +|||+||||||||++||++|+++|+++++||+.+ .||.|.+... +.+ . .|. ...+.-+ T Consensus 6 ~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~-~GG~l~~~~~---------------i~n-~--pg~---~~~i~G~ 63 (321) T PRK10262 6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTE---------------VEN-W--PGD---PNDLTGP 63 (321) T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCC---------------EEE-C--CCC---CCCCCHH T ss_conf 6009999976899999999998699679996059-6874200560---------------356-1--788---8764779 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCC Q ss_conf 99999999999877777876400431011001110--0222102357521123221000046766524--4457665321 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI--VSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFD 157 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~--~~~~~v~V~~~~~~~~i~ad~iviATGs~p~--~iP~~~~~~~ 157 (466) .++++..+...+ .+++++...-.- ...+.+.|.++.+ +++++.+|||||++|+ .+|+.+ .+. T Consensus 64 ~l~~~~~~q~~~-----------~~~~i~~~~v~~i~~~~~~f~v~t~~g--~~~a~aViiAtG~~~r~l~ipge~-~~~ 129 (321) T PRK10262 64 LLMERMHEHATK-----------FETEIIFDHINKVDLQNRPFRLTGDSG--EYTCDALIIATGASARYLGLPSEE-AFK 129 (321) T ss_pred HHHHHHHHHHHH-----------HCCEEEECCCCEEEEECCCEEEECCCC--EEEEEEEEEEECCCCCCCCCCCHH-HHC T ss_conf 999999999997-----------087489412315774036519975898--899989999646865537999714-306 Q ss_pred CEE--E-EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 002--4-5305741111113332101234454332013220122011100001112212222112222222222222322 Q gi|254781053|r 158 EQV--I-VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQL 234 (466) Q Consensus 158 ~~~--~-~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~ 234 (466) +.. + .+++. +. ..+|+++|+|||..|+|.|.+|++++++||+++|++.+.. ++...+.+.+.+++.+|.+++ T Consensus 130 g~gv~~~~~cd~-~~--~~~k~VaViGgG~~A~d~A~~L~~~a~~V~lv~rr~~~~a--~~~~~~~~~~~~e~~~i~~~~ 204 (321) T PRK10262 130 GRGVSACATCDG-FF--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--EKILIKRLMDKVENGNIILHT 204 (321) T ss_pred CCCEEEEEEECC-HH--CCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CHHHHHHHHHHHHCCCEEEEC T ss_conf 886689885053-00--1898799991888899999999976198999974465562--788999999776358558743 Q ss_pred CHHHHHHHCCCCCC-EEEEEEECC--CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCC-----CCEEECC Q ss_conf 00234420146872-169997213--321100000232045312103678400001267642233377-----6333026 Q gi|254781053|r 235 NSKVSSVKKVKGKA-QVVYRSTDD--EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG-----QFQTSIS 306 (466) Q Consensus 235 ~~~v~~i~~~~~~~-~v~~~~~~g--~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~-----~~~Ts~p 306 (466) +..+.+++..+.++ .+.+.+... ..+++++|.+++++|+.||+..+ + ..+++ ++|+|.||+ ++|||+| T Consensus 205 ~~~i~~i~g~~~~v~gv~l~~~~~~~~~~~~~~d~v~v~~G~~pn~~~~--~-~~l~l-~~g~i~vd~~~~~~~~~Tsip 280 (321) T PRK10262 205 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLEL-ENGYIKVQSGIHGNATQTSIP 280 (321) T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCHHHH--C-CCEEC-CCCEEEECCCCCCCCCCCCCC T ss_conf 7078999778765899999937778667998602389995576784775--5-85402-399699688876787768989 Q ss_pred CCEEECCCCCCC-CCCCEECCCCCCEEECCC Q ss_conf 848702433354-344300012320120111 Q gi|254781053|r 307 TIYAIGDVVRGP-MLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 307 ~IyA~GDv~g~~-~l~~~A~~~g~~aa~~i~ 336 (466) ||||+|||+.++ .+...|.-+|..||..+. T Consensus 281 GifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~ 311 (321) T PRK10262 281 GVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321) T ss_pred CEEEEEECCCCCCCEEEEEHHHHHHHHHHHH T ss_conf 9899994778988768780785899999999 No 41 >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation. Probab=100.00 E-value=5e-37 Score=288.02 Aligned_cols=362 Identities=20% Similarity=0.267 Sum_probs=243.1 Q ss_pred EEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE-CCCCCCC Q ss_conf 9999898668999999998----7993999937997150251366737098999999999999866755816-4775328 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN-IASCHLD 79 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~-~~~~~~d 79 (466) +||||-|.||.-+--...+ ..++++++=.++.. |+ .++ .++ +-+.+.| T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~-----~Y---------------dRv-------~LSs~l~G~~~ 53 (813) T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEPHP-----AY---------------DRV-------LLSSVLQGEAD 53 (813) T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC---------------CCE-------EECEEECCCCC T ss_conf 9787047410347776751210177308998258895-----43---------------602-------21101046455 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999877777876400431011001110--02221023575211232210000467665244457665321 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI--VSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~--~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) .+. +.-.-+.+.++++|.++.++-.+ -..++..++ +..++..||+||+||||.|+-+|....+. T Consensus 54 ~~~-----------l~L~~~D~y~~~~i~ly~ge~vi~id~~~k~v~t--~a~r~~~YD~LilATGS~pfilPipG~D~- 119 (813) T TIGR02374 54 LED-----------LTLNSKDWYEKHGIKLYTGERVIQIDREEKSVIT--DAGRTLSYDKLILATGSYPFILPIPGADK- 119 (813) T ss_pred HHH-----------CCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEC--CCCCCCCCCEEEEECCCCCCCCCCCCCCC- T ss_conf 778-----------0668788312275489876888998357645870--47763357517873066573086688888- Q ss_pred CEEEEEECCCCCCC------CCCCCC------CCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-CCCCCCCCCCCCC Q ss_conf 00245305741111------113332------1012344543320132201220111000011122-1222211222222 Q gi|254781053|r 158 EQVIVSSTGALSFS------SVPKNL------LVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-GMDKEIAAHCLKI 224 (466) Q Consensus 158 ~~~~~t~~~~~~l~------~~P~~i------vIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-~~d~~~~~~~~~~ 224 (466) +.++-.+++-+++ +.-++- +|||||..|+|-|..|..||.+|++|+.+|.||. .+|+...+.+++. T Consensus 120 -~~v~~fRti~D~~A~~~~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~ 198 (813) T TIGR02374 120 -KGVYVFRTIEDLDAILAAAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRE 198 (813) T ss_pred -CCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf -8615870567999999999863126766785588674158899999987797064467648989999999999999999 Q ss_pred CCCCCCCCCC--CHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 2222222322--00234420146-87216999721332110000023204531210367840000126764223337763 Q gi|254781053|r 225 MSKQGMNFQL--NSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466) Q Consensus 225 l~~~gV~i~~--~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466) |++.||+||+ +.+-.++-+.+ ....-.++..||+ .+++|.|++|+|.+||++ | ..++||++++||.|+||++| T Consensus 199 le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~--~l~aDlvv~A~GirP~~~-L-A~~aGl~v~~RrGiivnd~~ 274 (813) T TIGR02374 199 LEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS--SLEADLVVFAAGIRPRDE-L-AAEAGLKVNDRRGIIVNDSM 274 (813) T ss_pred HHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC--EEEECEEEEECCCCCCHH-H-HHHCCCCCCCCCCEEECCCC T ss_conf 9857957986176110576415640123122423897--887037999515666368-9-98659735476767872622 Q ss_pred EEECCCCEEECCCCCC----CCCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEE- Q ss_conf 3302684870243335----4344300012320120111222-222233332210001445510014788862346658- Q gi|254781053|r 302 QTSISTIYAIGDVVRG----PMLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYK- 375 (466) Q Consensus 302 ~Ts~p~IyA~GDv~g~----~~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~- 375 (466) |||.|||||+|.|+.. +-|.-=-+.||.++|++|.|-+ .+| ....|++ ++|=.|+|+- T Consensus 275 qTs~P~IYAvGEcA~~~G~~YGLVAPlY~~A~v~a~h~lG~~~~~y-~gs~LSa---------------~LK~~GvdV~S 338 (813) T TIGR02374 275 QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHILGVETEEY-EGSDLSA---------------KLKLLGVDVAS 338 (813) T ss_pred CCCCCCEEEEEEEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCC-CCCCHHH---------------HHHHCCEEEEE T ss_conf 3788873356655510885897107614789999998648987767-6765456---------------54032224552 Q ss_pred EEEEE-ECCCCHH-HHCCCC-CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 99996-0447034-418898-338999997899869999998299889999999999 Q gi|254781053|r 376 VGKFP-FSANGRA-RSMNSI-DGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLM 429 (466) Q Consensus 376 v~~~~-~~~~~ra-~~~~~~-~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai 429 (466) .+.+. -+..-++ ++.++. .-|-|+|+..+...|+|+-+||+ +++--+++.+.. T Consensus 339 ~Gd~~G~~e~~~~~~~~De~~~iYkk~vl~~d~~TL~GavL~GD-~s~~~~L~~~v~ 394 (813) T TIGR02374 339 AGDAQGETEEAKSIKIYDEQKGIYKKLVLSDDKKTLLGAVLVGD-TSDYGRLLDMVL 394 (813) T ss_pred ECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEE-CCCCCHHHHHHH T ss_conf 06544789984068887266451567888448826887899863-055425888865 No 42 >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] Probab=100.00 E-value=2.7e-35 Score=275.43 Aligned_cols=285 Identities=26% Similarity=0.371 Sum_probs=195.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 933199998986689999999987993-9999379971502513667370989999999999998667558164775328 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~-V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) |+|||+|||||||||+||+++++++++ ++|+|+. ..||. |+++ .......|+. ..+. T Consensus 2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~-~~gg~-------~~~~-----------~~venypg~~---~~~~ 59 (305) T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQ-------LTKT-----------TDVENYPGFP---GGIL 59 (305) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCC-------CCCC-----------EEECCCCCCC---CCCC T ss_conf 42288998958899999999987589856999478-75886-------3443-----------3335767986---7775 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-CC-CCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCC Q ss_conf 999999999999987777787640043101100111002-22-1023575211232210000467665244--4576653 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS-NN-KILVKGSSSEETIEAKNIVIATGSEASG--LPGMSID 155 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~-~~-~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~ 155 (466) .+.+++...+.. +..+++++.....-++ .. .+.|.+.++. ++++++|||||+.++. +|+.. + T Consensus 60 g~~L~~~~~~~a-----------~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~--~~ak~vIiAtG~~~~~~~~~~e~-e 125 (305) T COG0492 60 GPELMEQMKEQA-----------EKFGVEIVEDEVEKVELEGGPFKVKTDKGT--YEAKAVIIATGAGARKLGVPGEE-E 125 (305) T ss_pred HHHHHHHHHHHH-----------HHCCEEEEEEEEEEEEECCCEEEEEECCCE--EEEEEEEECCCCCCCCCCCCCCH-H T ss_conf 089999999777-----------634708888998998606860999947974--98656999617765678898725-4 Q ss_pred CCC--EEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC Q ss_conf 210--024-5305741111113332101234454332013220122011100001112212222112222222222-222 Q gi|254781053|r 156 FDE--QVI-VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-GMN 231 (466) Q Consensus 156 ~~~--~~~-~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-gV~ 231 (466) +.+ ..+ .+++. +. ..++++|||||..++|.|.+|++.+++||++.|++.+-. + +.+++.|++. +|+ T Consensus 126 ~~g~gv~yc~~cdg-~~---~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~----~~~~~~l~~~~~i~ 195 (305) T COG0492 126 FEGKGVSYCATCDG-FF---KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--E----EILVERLKKNVKIE 195 (305) T ss_pred HCCCCEEEEEECCC-CC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCC--C----HHHHHHHHHCCCEE T ss_conf 35887599773476-35---798499999987899999998853683999965866682--7----99999987358828 Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE Q ss_conf 32200234420146872169997213321100000232045312103678400001267642233377633302684870 Q gi|254781053|r 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI 311 (466) Q Consensus 232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~ 311 (466) +++++.+.++...+ ...+.+++..++...+++|.+++++|..||++. ++..++ ++++|+|+||+.+|||+|+|||| T Consensus 196 ~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAa 271 (305) T COG0492 196 VLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAA 271 (305) T ss_pred EEECCEEEEECCCC-CCEEEEEECCCCEEEEEEEEEEEECCCCCCHHH--HHCCCC-CCCCCCEECCCCCEECCCCEEEC T ss_conf 99787035871666-326999935783689872579996178883466--530244-36896487289827045888986 Q ss_pred CCCCCCCC-CCCEECCCCCCEEECC Q ss_conf 24333543-4430001232012011 Q gi|254781053|r 312 GDVVRGPM-LAHKAEDEGIAVAEII 335 (466) Q Consensus 312 GDv~g~~~-l~~~A~~~g~~aa~~i 335 (466) |||+..+. +.-.|..+|..|+..+ T Consensus 272 GDv~~~~~rqi~ta~~~G~~Aa~~a 296 (305) T COG0492 272 GDVADKNGRQIATAAGDGAIAALSA 296 (305) T ss_pred HHHCCCCCCEEEEHHCCHHHHHHHH T ss_conf 2331563212200215389999999 No 43 >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Probab=100.00 E-value=7e-35 Score=272.44 Aligned_cols=282 Identities=22% Similarity=0.323 Sum_probs=200.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH Q ss_conf 31999989866899999999879--9399993799715025136673709899999999999986675581647753289 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL 80 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~ 80 (466) =-|||||||.||+.+|..+.+.- .+++|||+.... +-+.+++. ....-++......++ T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------l~~plL~e----------va~g~l~~~~i~~p~ 63 (405) T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------LFTPLLYE----------VATGTLSESEIAIPL 63 (405) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----------CCCHHHHH----------HHCCCCCHHHEECCH T ss_conf 5699989867999999976416788718999188766----------66303355----------632877756521308 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCC--CCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCC Q ss_conf 999999999999877777876400-431011001110022--21023575211232210000467665244--4576653 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSN--NKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSID 155 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~--~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~ 155 (466) ...+.. .+|.++.++..=+|. ++|.+.. .+.+.||++|||+||.+.. +||... T Consensus 64 ------------------~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~---~~~i~YD~LVvalGs~~~~fgi~G~~E- 121 (405) T COG1252 64 ------------------RALLRKSGNVQFVQGEVTDIDRDAKKVTLAD---LGEISYDYLVVALGSETNYFGIPGAAE- 121 (405) T ss_pred ------------------HHHHCCCCCEEEEEEEEEEECCCCCEEEECC---CCCCCCCEEEEECCCCCCCCCCCCHHH- T ss_conf ------------------9984235744899978999715679899578---870236389994587667689978787- Q ss_pred CCCEEEEEECCCCCCC-----------CCCC-----CCCCCCCCCCCCCCCHHHHHCC-------------CCHHHHHHC Q ss_conf 2100245305741111-----------1133-----3210123445433201322012-------------201110000 Q gi|254781053|r 156 FDEQVIVSSTGALSFS-----------SVPK-----NLLVIGAGVIGLELGSVWTRLG-------------SCVKIIEHS 206 (466) Q Consensus 156 ~~~~~~~t~~~~~~l~-----------~~P~-----~ivIIGgG~ig~E~A~~~~~lG-------------~~Vtli~~~ 206 (466) ....+.+.+|+..++ ..++ +++|+|||++|+|+|..++.+- .+|+|++++ T Consensus 122 -~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~ 200 (405) T COG1252 122 -YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG 200 (405) T ss_pred -HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf -0777788999999999999999986335643441189998988238999999999999876533478653189998257 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEE-E Q ss_conf 111221222211222222222222232200234420146872169997213321100000232045312103678400-0 Q gi|254781053|r 207 GTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEE-I 285 (466) Q Consensus 207 ~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~ 285 (466) |++||.|++++++.+++.|++.||++++++.|++++++. +++.+++ . +|++|.++|++|.+|+.- +++ . T Consensus 201 p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~--~-~I~~~tvvWaaGv~a~~~---~~~l~ 270 (405) T COG1252 201 PRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGE--E-EIPADTVVWAAGVRASPL---LKDLS 270 (405) T ss_pred CHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEECCCC--E-EEECCEEEECCCCCCCHH---HHHCC T ss_conf 121358888999999999998797898698148976991----7975588--3-776277998577757866---66327 Q ss_pred ECCCCCCCCCCCCCCCEE-ECCCCEEECCCCC------CCCCCCEECCCCCCEEECCCC Q ss_conf 012676422333776333-0268487024333------543443000123201201112 Q gi|254781053|r 286 GINIDHRGCIEIGGQFQT-SISTIYAIGDVVR------GPMLAHKAEDEGIAVAEIISG 337 (466) Q Consensus 286 gi~~~~~G~I~vd~~~~T-s~p~IyA~GDv~g------~~~l~~~A~~~g~~aa~~i~~ 337 (466) |++.|++|++.||+++|+ +.|+|||+|||+. .|+.+..|.+||..+++||.. T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405) T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405) T ss_pred HHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 02213489777578751699898699711103768887998118899999999999999 No 44 >PRK11749 putative oxidoreductase; Provisional Probab=100.00 E-value=1.3e-33 Score=263.14 Aligned_cols=276 Identities=27% Similarity=0.389 Sum_probs=188.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|+|||||||||+||.+|+++|++|+++|+.+..||. +.+| ||..- +. +.+ T Consensus 142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl-l~~G-IP~~r--------------------------lp-k~v 192 (460) T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL-LRYG-IPEFR--------------------------LP-KDI 192 (460) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CCCCC--------------------------CC-HHH T ss_conf 8999896789999999999769847997047878755-7545-89975--------------------------54-479 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCC--CCCCCCCCCCEE Q ss_conf 9999999998777778764004310110011100222102357521123221000046766-5244--457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASG--LPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~--iP~~~~~~~~~~ 160 (466) +++.. ..++..||++..+.. + + +.+.++. -.-+||.++||||+ +|+. +||.+. .. T Consensus 193 -------~~~ei----~~i~~~GV~~~~n~~-v-G-~ditl~~----L~~~ydAV~lAtGa~~~r~l~ipGe~~----~G 250 (460) T PRK11749 193 -------VDREV----ERLLKLGVEIRTNTA-V-G-RDITLDE----LRAEYDAVFIGTGLGLPRFLGIPGENL----GG 250 (460) T ss_pred -------HHHHH----HHHHHCCCEEECCEE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC T ss_conf -------99999----999853978985558-5-6-6432887----741148899944789886479998668----88 Q ss_pred EEEECCCCC------------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCC-CCCCCCCCCCCCCCCCC Q ss_conf 453057411------------111133321012344543320132201220-1110000111-22122221122222222 Q gi|254781053|r 161 IVSSTGALS------------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTI-LNGMDKEIAAHCLKIMS 226 (466) Q Consensus 161 ~~t~~~~~~------------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~l-l~~~d~~~~~~~~~~l~ 226 (466) +++.-+++. ....+|+++|||||.+|+++|..+.++|.+ ||+++|+++- +|....++ +..+ T Consensus 251 V~~a~dfL~~~~~~~~~~~~~~~~~Gk~VvVIGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei-----~~A~ 325 (460) T PRK11749 251 VYSAVDFLTRVNQDAVADDDTLIAVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEV-----EHAK 325 (460) T ss_pred EEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHH-----HHHH T ss_conf 78989999997436544457755448748998984669998999998289846330007520099899999-----9887 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCE-EEEE---------------EECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCC Q ss_conf 22222322002344201468721-6999---------------7213321100000232045312103678400001267 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQ-VVYR---------------STDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINID 290 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~ 290 (466) ++||+++++..+.++...++++. +.+. ..+++..++++|.|++|+|+.|+.+.+ .+..+++++ T Consensus 326 ~eGv~~~~~~~p~ei~~~~~~v~gv~~~~~~l~~~d~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~g~~~~ 404 (460) T PRK11749 326 EEGVEFVWLAAPVAILGDEGRVTGVKFERMELGEPDAGRRRPVPIEGSEFTLEADMVIKAIGQTPNPLIL-ATTPGLAVT 404 (460) T ss_pred HCCEEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCCEEC T ss_conf 4570888266878999659957999999988615777873524079957999899999998789884100-346681276 Q ss_pred CCCCCCCC-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 64223337-76333026848702433354344300012320120111 Q gi|254781053|r 291 HRGCIEIG-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 291 ~~G~I~vd-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ++|.+.+| +++|||+|+|||+|||..++.++..|+.+|+.||..|. T Consensus 405 ~~g~i~~~d~~~~Ts~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~ 451 (460) T PRK11749 405 RWGTIIADDETGRTSLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIH 451 (460) T ss_pred CCCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 89998846899722899999945877670599999999999999999 No 45 >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Probab=100.00 E-value=6.3e-34 Score=265.47 Aligned_cols=278 Identities=21% Similarity=0.303 Sum_probs=192.4 Q ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 99998986689999999987---993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) |||||||.||+++|.++++. +.+|+|||+++.+ ....+.|. . + .+. ++..+..++ T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~----~y~~~lp~--------~---~---~g~--~~~~~i~~~-- 59 (364) T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG--------M---I---AGH--YSLDEIRID-- 59 (364) T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----EECCHHHH--------H---H---HCC--CCHHHEECC-- T ss_conf 999996099999999970417899839999998865----16251699--------9---7---404--779992216-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCE Q ss_conf 9999999999987777787640043101100111002221023575211232210000467665244--45766532100 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQ 159 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~ 159 (466) +..++...+++++.++..=+|+..=.|..+++ +++.||++||||||++.. +|+.. + T Consensus 60 ----------------~~~~~~~~gv~~i~~~V~~ID~~~k~V~~~~g-~~l~YD~LViAtGs~~~~~~i~G~~-----e 117 (364) T TIGR03169 60 ----------------LRRLARQAGARFVIAEATGIDPDRRKVLLANR-PPLSYDVLSLDVGSTTPLSGVEGAA-----D 117 (364) T ss_pred ----------------HHHHHHHCCCEEEEEEEEEEECCCCEEEECCC-CEEECCEEEEECCCCCCCCCCCCCC-----C T ss_conf ----------------89999777949996378999768898998899-8873688999436777889999720-----2 Q ss_pred EEEEE---CCCCC----------CCCCCCCCCCCCCCCCCCCCCHHHHH----CCCCH-HHHHHCCCCCCCCCCCCCCCC Q ss_conf 24530---57411----------11113332101234454332013220----12201-110000111221222211222 Q gi|254781053|r 160 VIVSS---TGALS----------FSSVPKNLLVIGAGVIGLELGSVWTR----LGSCV-KIIEHSGTILNGMDKEIAAHC 221 (466) Q Consensus 160 ~~~t~---~~~~~----------l~~~P~~ivIIGgG~ig~E~A~~~~~----lG~~V-tli~~~~~ll~~~d~~~~~~~ 221 (466) ..+.. +++.. ....+.+++|+|+|++|+|+|..++. .|.+. .++...+++|+.+++.+++.+ T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~~~~~~~~~~~ 197 (364) T TIGR03169 118 LAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLV 197 (364) T ss_pred CCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHHH T ss_conf 64224779999999999998764057996458978581799999999999874687427998357751012599999999 Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC Q ss_conf 22222222223220023442014687216999721332110000023204531210367840000126764223337763 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF 301 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~ 301 (466) ++.|++.||++++++.+++++... +.+ .++ .++++|.++|++|.+||.- +.+.++++|++|+|.||++| T Consensus 198 ~~~l~~~gI~v~~~~~v~~v~~~~----v~l--~~g--~~i~~d~vi~~~G~~p~~~---~~~~~l~~d~~G~I~Vd~~l 266 (364) T TIGR03169 198 LRLLARRGIEVHEGAPVTRGPDGA----LIL--ADG--RTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTL 266 (364) T ss_pred HHHHHHCCCEEEECCEEEEECCCC----EEE--CCC--CEEEEEEEEECCCCCCCHH---HHHCCCCCCCCCCEEECCCC T ss_conf 999997795698375368977995----183--799--7896308998888778865---77446630789978878873 Q ss_pred EE-ECCCCEEECCCCCC-----CCCCCEECCCCCCEEECCCC Q ss_conf 33-02684870243335-----43443000123201201112 Q gi|254781053|r 302 QT-SISTIYAIGDVVRG-----PMLAHKAEDEGIAVAEIISG 337 (466) Q Consensus 302 ~T-s~p~IyA~GDv~g~-----~~l~~~A~~~g~~aa~~i~~ 337 (466) |+ +.|||||+|||+.. |..+..|.+||.++|+||.. T Consensus 267 q~~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~ 308 (364) T TIGR03169 267 QSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364) T ss_pred EECCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 768999999971543688999997438899999999999999 No 46 >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. . Probab=99.98 E-value=6.2e-33 Score=258.26 Aligned_cols=279 Identities=28% Similarity=0.410 Sum_probs=201.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) +=|.|||+|||||++|..+|+.|++|+++|.-+-.||. +. ||| .+.++| +. T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~-------------------------YGI--PefRLp-Ke 193 (462) T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LA-------------------------YGI--PEFRLP-KE 193 (462) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE-------------------------ECC--CCCCCC-HH T ss_conf 77999846821468899997479869999714899856-75-------------------------368--885487-57 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCC--CCCCCCCCCCCE Q ss_conf 99999999998777778764004310110011100222102357521123221000046766-524--445766532100 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EAS--GLPGMSIDFDEQ 159 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~--~iP~~~~~~~~~ 159 (466) ++++ .+ ..|++.||++..++ ++ .++++.+ .=-+.|-+|.+-|+||+ +|+ +|||..+ . T Consensus 194 i~~~---E~--------k~LkklGv~fr~~~--lv-Gkt~TL~--eL~~~YGfDAVFIgtGAG~pkl~NipG~~L----~ 253 (462) T TIGR01316 194 IVET---EV--------KKLKKLGVKFRTDY--LV-GKTVTLE--ELLEKYGFDAVFIGTGAGLPKLLNIPGEEL----K 253 (462) T ss_pred HHHH---HH--------HHHHHCCEEEEECC--EE-CCCHHHH--HHHHHCCCCEEEEEECCCCCEECCCCCHHH----C T ss_conf 8898---88--------87632663799443--75-0511288--888751970799950689870016784343----4 Q ss_pred EEEEECCCCC---------C--CCCC----CCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 2453057411---------1--1113----3321012344543320132201220-111000011122122221122222 Q gi|254781053|r 160 VIVSSTGALS---------F--SSVP----KNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCLK 223 (466) Q Consensus 160 ~~~t~~~~~~---------l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~~ 223 (466) .+++..|++. + .+.| ||++|||||++|+..|-.-.|||.+ ||+++|+.|= |-...+.=.+ T Consensus 254 gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtRe----dmtAr~EEi~ 329 (462) T TIGR01316 254 GVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTRE----DMTAREEEIK 329 (462) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC----CCHHHHHHHH T ss_conf 002234688777776542366788756544768998785367877766645284236998854777----5136699999 Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE--C----------------CCCCCCEEEEEEECCCCEEEECCCCCEEE Q ss_conf 22222222322002344201468721699972--1----------------33211000002320453121036784000 Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST--D----------------DEPINIEADAVLVAAGRRPYTKGLGLEEI 285 (466) Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~--~----------------g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~ 285 (466) +++++||+||+=++++++-.++.+....++.. + ++...++||.||+|+|..||- |-.+.. T Consensus 330 ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Np--i~~e~~ 407 (462) T TIGR01316 330 HAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANP--IIAEDS 407 (462) T ss_pred HHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCC--EEEECC T ss_conf 885389289987421689865765189999885376881145781243049951788626599974589883--033067 Q ss_pred -ECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf -012676422333776333026848702433354344300012320120111 Q gi|254781053|r 286 -GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 286 -gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) +|+++++|.|.|||.++||.|||||-||++.+-...=.|+-||+-||..|. T Consensus 408 r~lkt~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~ 459 (462) T TIGR01316 408 RSLKTSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID 459 (462) T ss_pred CEEEECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH T ss_conf 3333458865787476304767574267277458669985003568999874 No 47 >PRK12831 putative oxidoreductase; Provisional Probab=99.98 E-value=1.7e-32 Score=255.11 Aligned_cols=278 Identities=24% Similarity=0.339 Sum_probs=186.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466) |.|||+|||||+||.+|+++|++|+++|+.+..||... +| ||. .+++-..++ T Consensus 143 VAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~-yG-IP~--------------------------~RLpk~~vl 194 (464) T PRK12831 143 VAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLV-YG-IPE--------------------------FRLPKETVV 194 (464) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE-EC-CCC--------------------------CCCCHHHHH T ss_conf 99989768999999999976991799827888898044-51-688--------------------------876678999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC--CCCCCCCCCEEE Q ss_conf 9999999987777787640043101100111002221023575211232210000467665-2444--576653210024 Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGL--PGMSIDFDEQVI 161 (466) Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~i--P~~~~~~~~~~~ 161 (466) ++ .. ..++..||++..+.. + + +.+.+. +-.+.-.||.++||||+. |+.+ ||.+. ..+ T Consensus 195 ~~-------ei----~~l~~~GV~~~~n~~-v-G-~dis~~--~L~~~~~yDAV~la~Ga~~~r~l~ipG~~~----~gV 254 (464) T PRK12831 195 KK-------EI----ENIKKLGVKIETNVI-V-G-RTVTID--ELLEEEGFDAVFIGSGAGLPKFMGIPGENL----NGV 254 (464) T ss_pred HH-------HH----HHHHHCCCEEEECCC-C-C-CCCCHH--HHHHCCCCCEEEEECCCCCCCCCCCCCCCC----CCE T ss_conf 99-------99----999852938991574-2-7-876799--996356998899944888764378887668----886 Q ss_pred EEECCCCCC--------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCCCCC Q ss_conf 530574111--------------11133321012344543320132201220111000011-122122221122222222 Q gi|254781053|r 162 VSSTGALSF--------------SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDKEIAAHCLKIMS 226 (466) Q Consensus 162 ~t~~~~~~l--------------~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~~~~~~~~~~l~ 226 (466) ++..+++.. -...|+++|||||.+|+.+|....|+|++|++++|+++ -+|....+ + +... T Consensus 255 ~~a~~fL~~~n~~~~~~~~~~~~~~~Gk~VvVIGGGntA~D~arta~R~GaeV~ivyrr~~~~mpa~~~E----~-~~a~ 329 (464) T PRK12831 255 FSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----V-HHAK 329 (464) T ss_pred EEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH----H-HHHH T ss_conf 8979999998730012665667422587789988855689999988742977999704572138987012----3-3787 Q ss_pred CCCCCCCCCHHHHHHHCCCCC-CE-EE---EEE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECC Q ss_conf 222223220023442014687-21-69---997-------------2133211000002320453121036784000012 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGK-AQ-VV---YRS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN 288 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~-~~-v~---~~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~ 288 (466) ++||++++.+.+.++..++++ +. +. ... .++++.++++|.|++|+|+.|+...+ .+..|++ T Consensus 330 eeGv~~~~~~~p~~i~~~e~G~v~gv~~~~~~l~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~~~~~~~-~~~~gi~ 408 (464) T PRK12831 330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVMEVDTVIMSLGTSPNPLIS-STTPGLE 408 (464) T ss_pred HCCCEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEE T ss_conf 489789965685588754888388789999884355788877137649937999899999998689874300-1366802 Q ss_pred CCCCCCCCCC-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 6764223337-76333026848702433354344300012320120111 Q gi|254781053|r 289 IDHRGCIEIG-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 289 ~~~~G~I~vd-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ++++|+|.+| +.++||.|+|||+|||..++.+...|+.+|+.||+.|. T Consensus 409 ~~~~g~i~~~~~~~~Ts~~gVFa~GD~~~G~~~vV~Ai~~Gr~AA~~I~ 457 (464) T PRK12831 409 INKRGCIVADEETGLTSIEGVYAGGDAVTGAATVILAMGAGKKAAKAID 457 (464) T ss_pred ECCCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 7799988847899842899999827867683399999999999999999 No 48 >PRK09853 putative selenate reductase subunit YgfK; Provisional Probab=99.98 E-value=7.4e-33 Score=257.69 Aligned_cols=278 Identities=22% Similarity=0.318 Sum_probs=191.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. .+=.||. .+++ +.+ T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm--L~yGIP~--------------------------fRLP-k~v 602 (1032) T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGV--VKNIIPE--------------------------FRIP-AEL 602 (1032) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH T ss_conf 7999896889999999999779936998158978842--6735887--------------------------6789-999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24445766532100245 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVIV 162 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~~ 162 (466) +++.. ..++..||++..+.++ .+.++. -+.=.||.++||||+. |+.++. +++...++ T Consensus 603 -------IdreI----~~l~~~GV~f~tnvg~-----ditle~---L~~eGyDAVfLa~GA~~~r~L~I---pGe~~gV~ 660 (1032) T PRK09853 603 -------IQHDI----DFVAAHGVKFEYGCSP-----DLTVEQ---LKNQGYHYVLLAIGADKNGGLKL---AGDNQNVW 660 (1032) T ss_pred -------HHHHH----HHHHHCCCEEEECCCC-----CCCHHH---HHHCCCCEEEEECCCCCCCCCCC---CCCCCCEE T ss_conf -------99999----9999779699969999-----888999---96579999999458898887999---98657807 Q ss_pred EECCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHC-CC-CHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3057411-------111133321012344543320132201-22-0111000011-122122221122222222222223 Q gi|254781053|r 163 SSTGALS-------FSSVPKNLLVIGAGVIGLELGSVWTRL-GS-CVKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 163 t~~~~~~-------l~~~P~~ivIIGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i 232 (466) ..-+++. -..+.|+++|||||.+|+.+|-.-.|+ |+ +||+++|+.+ -+|....++ . ..+++||++ T Consensus 661 ~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtivYRRt~~eMPA~~eEi----e-~A~eEGVef 735 (1032) T PRK09853 661 KSLPFLREYNKGTADLKLGKHVVVVGAGNTAMDCARAALRVPGVEKVTVVYRRTLKEMPAWREEY----E-EALHDGVEF 735 (1032) T ss_pred EHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHH----H-HHHHCCEEE T ss_conf 77999998743898766899389989847999999998750688658996058632089998999----9-887547499 Q ss_pred CCCHHHHHHHCCCCCCEEEEEEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCC Q ss_conf 22002344201468721699972------------133211000002320453121036784000012676422333776 Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQVVYRST------------DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300 (466) Q Consensus 233 ~~~~~v~~i~~~~~~~~v~~~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~ 300 (466) ++.+.+.+++.++.......+.+ .|+..++++|.||.|+|..|+... ++..||++|++|.|.||+. T Consensus 736 ~~L~aP~~i~~dG~l~~~~M~LGEpDasGRrrPV~~Ge~~~i~aDtVI~AIGq~~d~~~--le~~GIeld~~G~I~vDe~ 813 (1032) T PRK09853 736 KFLLNPESFDADGTLTCRVMSLGEPDASGRRRPVETGETVTLHADTLITAIGEQVDTEL--LNAMGIPLDKNGWPDVNHN 813 (1032) T ss_pred EEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEEECCC T ss_conf 98018869943785899999976858888876506996489988999998878998651--0256811889998877989 Q ss_pred CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCCC Q ss_conf 333026848702433354344300012320120111222 Q gi|254781053|r 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK 339 (466) Q Consensus 301 ~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~ 339 (466) +|||.|||||+|||..+|.+.-.|+.+|+.||+.|.++. T Consensus 814 ~~TS~pGVFAaGD~v~GpSTVV~AIadGRkAA~aIl~~~ 852 (1032) T PRK09853 814 GETNLTNVFMIGDVQRGPSSIVAAIADARRATDAILSRE 852 (1032) T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987899977730767677899999999999999998532 No 49 >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=99.97 E-value=6.8e-32 Score=250.67 Aligned_cols=276 Identities=25% Similarity=0.336 Sum_probs=188.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. ..-.||. .+++- T Consensus 329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGl--L~yGIP~--------------------------fRLpk--- 377 (654) T PRK12769 329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGL--LTFGIPA--------------------------FKLDK--- 377 (654) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE--EEECCCC--------------------------CCCCH--- T ss_conf 8999897789999999999769757995257778866--7524862--------------------------22778--- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466) +++++.. ..++..||++..+.. + + +.+.+.. -.=+||.++||||+. |+ .+||.+. .. T Consensus 378 -----~vv~~ei----~~l~~lGV~f~~n~~-V-G-kDitl~e----L~~~yDAVfla~Ga~~~r~l~IpGedl----~G 437 (654) T PRK12769 378 -----SLLARRR----EIFSAMGIHFELNCE-V-G-KDISLES----LLEDYDAVFVGVGTYRSMKAGLPNEDA----PG 437 (654) T ss_pred -----HHHHHHH----HHHHHCCCEEECCCE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC T ss_conf -----9999999----999826988983717-6-8-7658999----973699899951788786699899778----88 Q ss_pred EEEECCCC--------CCC---C------CCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCC Q ss_conf 45305741--------111---1------13332101234454332013220122-01110000111-221222211222 Q gi|254781053|r 161 IVSSTGAL--------SFS---S------VPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHC 221 (466) Q Consensus 161 ~~t~~~~~--------~l~---~------~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~ 221 (466) +++.-+++ .+. + ..|+++|||||.+|+..|-...|+|. +||+++|+++- +|....++ T Consensus 438 V~~AleFL~~~~~~~~g~~~~~~~~~i~~~GK~VvVIGGGntAmDcaRtA~RlGA~~Vt~vYRR~~~eMPA~~~Ev---- 513 (654) T PRK12769 438 VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV---- 513 (654) T ss_pred CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH---- T ss_conf 3878888999888651775556667655557558998887246999999997599836604546723499875665---- Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEE---EE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE Q ss_conf 22222222223220023442014687-21-699---97-------------21332110000023204531210367840 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVY---RS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~---~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466) +..+++||++++...+.++..++++ +. +.+ +. .+|++..+++|.||+|+|+.|+-.. .++ T Consensus 514 -~~A~EEGV~f~~~~~P~ei~~de~G~V~gv~~~r~~lgepD~sGRr~p~~v~gse~~i~aD~VI~AiG~~p~~~~-~~~ 591 (654) T PRK12769 514 -KNAREEGANFEFNVQPVALVLDEQGHVCGIRFLRTRLGEPDAQGRRRPVPIEGSEFVMPADAVIMAFGFNPHGMP-WLE 591 (654) T ss_pred -HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCC-CCC T ss_conf -578856878994468579997799729999999988556277787620564896699989999999889998875-322 Q ss_pred EEECCCCCCCCCCCCCC----CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 00012676422333776----333026848702433354344300012320120111 Q gi|254781053|r 284 EIGINIDHRGCIEIGGQ----FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 284 ~~gi~~~~~G~I~vd~~----~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ..|++++++|.|.+|.. +|||+|+|||+||+..++.+.-.|+.+|+.||+.|. T Consensus 592 ~~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId 648 (654) T PRK12769 592 SHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654) T ss_pred CCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 568137699988736777765448999989807856682899999999999999999 No 50 >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Probab=99.97 E-value=2e-32 Score=254.53 Aligned_cols=275 Identities=23% Similarity=0.333 Sum_probs=188.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. .+=.||. .+++ +.+ T Consensus 539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm--L~yGIP~--------------------------fRLP-kev 589 (1012) T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV--VKNIIPE--------------------------FRIS-AES 589 (1012) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH T ss_conf 8999897789999999999779956998158978854--7855887--------------------------7789-999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24445766532100245 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVIV 162 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~~ 162 (466) +++.. ..++..||++..+.+ ..+.++. -+.=.||.++||+|+. |+.++.. .+...++ T Consensus 590 -------I~reI----~~i~~~GV~f~tnvg-----~ditlee---L~~egYDAVfLa~GA~~~r~L~Ip---Gd~~gV~ 647 (1012) T TIGR03315 590 -------IQKDI----ELVKFHGVEFKYGCS-----PDLTVAE---LKNQGYKYVILAIGAWKHGPLRLE---GGGERVL 647 (1012) T ss_pred -------HHHHH----HHHHHCCEEEEECCC-----CCCCHHH---HHHCCCCEEEEECCCCCCCCCCCC---CCCCCCE T ss_conf -------99999----999968969997998-----8888999---965899999995689988779999---7656858 Q ss_pred EECCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHC-CC-CHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3057411-------111133321012344543320132201-22-0111000011-122122221122222222222223 Q gi|254781053|r 163 SSTGALS-------FSSVPKNLLVIGAGVIGLELGSVWTRL-GS-CVKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 163 t~~~~~~-------l~~~P~~ivIIGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i 232 (466) ..-+++. ...+.|+++|||||.+|+.+|-.-.|+ |+ +||+++|+.+ -+|....++ . ...+.||++ T Consensus 648 ~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtvvYRRt~~eMPA~~eEi----e-~A~EEGVef 722 (1012) T TIGR03315 648 KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----E-EALEDGVDF 722 (1012) T ss_pred EHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHHH----H-HHHHCCEEE T ss_conf 67999997211799656899589989847999999998750788757998258621089998999----8-777538179 Q ss_pred CCCHHHHHHHCCCCCCEE-EEEEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCC Q ss_conf 220023442014687216-99972------------13321100000232045312103678400001267642233377 Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQV-VYRST------------DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG 299 (466) Q Consensus 233 ~~~~~v~~i~~~~~~~~v-~~~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~ 299 (466) ++...+.+++ ++...+ ..+.+ .++..++++|.||+|+|..|+++. +++.|+++|++|.|.||+ T Consensus 723 ~~L~aP~~ie--dG~l~~~~m~LgepD~sGRrrPv~~ge~~~i~aDtVI~AIGQ~~d~~~--l~~~GIeld~rG~I~vD~ 798 (1012) T TIGR03315 723 KELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQ 798 (1012) T ss_pred EEEECCEEEE--CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCH--HHCCCCEECCCCCEEECC T ss_conf 9954885898--887999999976727888887517996489988999998788998540--212484088998988688 Q ss_pred -CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC Q ss_conf -633302684870243335434430001232012011122 Q gi|254781053|r 300 -QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ 338 (466) Q Consensus 300 -~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~ 338 (466) .+|||+|||||+|||..+|.+.-.|+.+|+.||+.|+++ T Consensus 799 ~t~~TS~pGVFAaGD~v~GpstVV~AIadGR~AA~aIl~~ 838 (1012) T TIGR03315 799 ATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012) T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 8787899998880066757789999999999999999864 No 51 >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional Probab=99.97 E-value=4.8e-32 Score=251.77 Aligned_cols=273 Identities=24% Similarity=0.358 Sum_probs=190.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466) |.|||||||||+||.+|+++|++|+++|+.+..||- .+=-||. .++. +.+ T Consensus 196 VAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm--lryGIP~--------------------------yRLP-k~v- 245 (652) T PRK12814 196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM--MRYGIPR--------------------------FRLP-ESV- 245 (652) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH- T ss_conf 999683789999999999779906998158888986--7644863--------------------------3389-999- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCCCCEEE Q ss_conf 9999999987777787640043101100111002221023575211232210000467665-244--4576653210024 Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASG--LPGMSIDFDEQVI 161 (466) Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~--iP~~~~~~~~~~~ 161 (466) +++. ++ .+.+.||++..+.. +-.+ +.+. +-.=.||.++||+|+. ++. +||.+. ..+ T Consensus 246 ------ld~E---I~-~i~~~GV~~~~n~~-vG~d--itl~----~L~~~yDAVflaiGa~~~r~L~ipGedl----~gV 304 (652) T PRK12814 246 ------IDAD---IA-PLRAMGAEFRFNTV-FGRD--ITLE----ELQKEFDAVLLAVGAQKASKMGIPGEEL----PGV 304 (652) T ss_pred ------HHHH---HH-HHHHCCCEEEEEEE-ECCC--CCHH----HHHHHCCEEEEEECCCCCCCCCCCCCCC----CCE T ss_conf ------9999---99-99971985886679-4774--7799----9986589999975578774479888878----772 Q ss_pred EEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 53057411------111133321012344543320132201220-111000011-1221222211222222222222232 Q gi|254781053|r 162 VSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNFQ 233 (466) Q Consensus 162 ~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i~ 233 (466) +..-+++. ...+.|+++|||||.+|+..|-...|+|.+ ||+++|+.+ -||..+.++ .. .+++||+++ T Consensus 305 ~~avdfL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei----~e-A~eEGV~~~ 379 (652) T PRK12814 305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EE-ALAEGVSLR 379 (652) T ss_pred EEHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHH----HH-HHHCCCCEE T ss_conf 7689999985269866678852486688138999999987489758998337633199986777----78-886798469 Q ss_pred CCHHHHHHHCCCCCCEEEEE-E---------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCC Q ss_conf 20023442014687216999-7---------------2133211000002320453121036784000012676422333 Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYR-S---------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI 297 (466) Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~-~---------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~v 297 (466) +.+.+.++...+++..+... . .++++.++++|.||+|+|+.++.+ .++..|++++++|.|.+ T Consensus 380 ~l~~P~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~--~~~~~gl~~~~~G~i~v 457 (652) T PRK12814 380 ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP--IAEAAGIGTSRNGTVKV 457 (652) T ss_pred ECCCCEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCC--HHHCCCCCCCCCCCEEE T ss_conf 7615589998689689999999996887889772456599669961788998458788833--22245863668998885 Q ss_pred C-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 7-7633302684870243335434430001232012011 Q gi|254781053|r 298 G-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 298 d-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) | +.++||.|+|||+||+..+|.++-.|+.+|+.||.+| T Consensus 458 d~~t~~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~I 496 (652) T PRK12814 458 DPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496 (652) T ss_pred CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 888874399999989888768449999999999999999 No 52 >PRK12810 gltD glutamate synthase subunit beta; Reviewed Probab=99.97 E-value=2.8e-32 Score=253.48 Aligned_cols=279 Identities=25% Similarity=0.351 Sum_probs=185.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||||||||+||.+|+++|++|+++|+.+..||. ..-+||+. +++ +.+ T Consensus 145 kVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGl--l~yGIP~~--------------------------RLp-k~v 195 (472) T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGL--LRYGIPDF--------------------------KLE-KDV 195 (472) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCCC--------------------------CCC-HHH T ss_conf 8999897789999999998669758997257777754--65317885--------------------------553-589 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCC--CCCCCCCCCCEE Q ss_conf 9999999998777778764004310110011100222102357521123221000046766-5244--457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASG--LPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~--iP~~~~~~~~~~ 160 (466) ++ +.. ..++..||++..+.. + + +.+.+. +-.-+||.++||||+ +|+. +||.+ .. . T Consensus 196 ~~-------~ei----~~l~~~GV~~~~n~~-V-G-~dit~~----~L~~~yDAV~la~Ga~~~r~l~ipG~~--~~--G 253 (472) T PRK12810 196 ID-------RRI----ELMEGEGIEFRTGVE-V-G-KDITAE----QLLAEYDAVFLGGGAYKPRDLGIPGRD--LD--G 253 (472) T ss_pred HH-------HHH----HHHHHCCCEEEECEE-C-C-CCCCHH----HHHCCCCEEEEECCCCCCCCCCCCCCC--CC--C T ss_conf 99-------999----999857978990523-1-8-757699----985057989990377878527877766--78--8 Q ss_pred EEEECCCCC--------------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCC------ Q ss_conf 453057411--------------111133321012344543320132201220-11100001112212222112------ Q gi|254781053|r 161 IVSSTGALS--------------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAA------ 219 (466) Q Consensus 161 ~~t~~~~~~--------------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~------ 219 (466) ++..-+++. .....|+++|||||.+|+++|....|+|.+ |+..+..+ +|..+.+... T Consensus 254 V~~A~dfL~~~~~~~~~~~~~~~~~~~Gk~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~--mp~~~~~~~~~~~~~~ 331 (472) T PRK12810 254 VHFAMDFLIQNTRVLGGEKDEPFILAKGKHVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMP--MPPSRRNKNNPWPYWP 331 (472) T ss_pred EEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC--CCCCCCCCCCCHHHHH T ss_conf 58869999999875337876666322476589989866899999999973896899975114--8813233237232334 Q ss_pred -CC-CCCCCCCCCCCCCCHHHHHHHCCCCCCE-EEE---EE---------ECCCCCCCEEEEEEECCCCEEEECCCCCEE Q ss_conf -22-2222222222322002344201468721-699---97---------213321100000232045312103678400 Q gi|254781053|r 220 -HC-LKIMSKQGMNFQLNSKVSSVKKVKGKAQ-VVY---RS---------TDDEPINIEADAVLVAAGRRPYTKGLGLEE 284 (466) Q Consensus 220 -~~-~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~---~~---------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~ 284 (466) .. .+...++||+++++..+.++...++.+. +.+ .. ..+++.++++|.|++|+|+.|+...+ ++. T Consensus 332 ~~~ev~~A~eEGv~~~~~~~p~~i~~~~g~v~gv~~~~~~~~~g~~~~~~~~g~e~~i~aD~VI~AiGq~~~~~~~-~~~ 410 (472) T PRK12810 332 MKFEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVETELGKGRRKFEPVPGSEFVLPADLVLLAMGFTGPEPEW-LAQ 410 (472) T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCCCCC-CCC T ss_conf 6888999997488257335736998149869999999977617887625669954999899999988888886322-225 Q ss_pred EECCCCCCCCCCCCC-CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 001267642233377-6333026848702433354344300012320120111 Q gi|254781053|r 285 IGINIDHRGCIEIGG-QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 285 ~gi~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) .|+++|++|.|.||+ .+|||+|+|||+|||..++.++..|+.+|+.||..|. T Consensus 411 ~gl~~d~~G~i~vd~~~~~Ts~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~ 463 (472) T PRK12810 411 FGVELDERGRVAADEGAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 463 (472) T ss_pred CCCEECCCCCEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 68028799988868998745999999836877781699999999999999999 No 53 >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=99.97 E-value=4.2e-31 Score=244.92 Aligned_cols=277 Identities=23% Similarity=0.306 Sum_probs=187.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. ..=.||. .+++- T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGl--L~yGIP~--------------------------fRLPK--- 360 (639) T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM--LTFGIPP--------------------------FKLDK--- 360 (639) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCCH--- T ss_conf 8999897589999999999759906999368888986--8535874--------------------------52777--- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466) +++++.. ..++..||++..+.- ++ +.+.+. +-.=+||.++|+||+. |+ .+||.+. .. T Consensus 361 -----~vv~rei----~~l~~lGV~f~~n~~--VG-kDit~~----eL~~~yDAVflg~Ga~~~~~l~IpGedl----~G 420 (639) T PRK12809 361 -----TVLSQRR----EIFTAMGIDFHLNCE--IG-RDITFS----DLTSEYDAVFIGVGTYGMMRADLPHEDA----PG 420 (639) T ss_pred -----HHHHHHH----HHHHHCCCEEEECCE--EC-CCCCHH----HHHHHCCEEEEEECCCCCCCCCCCCCCC----CC T ss_conf -----8999999----999864988991967--79-868899----9973179899973678885489887778----78 Q ss_pred EEEECCCCC-----------CCCC------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCC Q ss_conf 453057411-----------1111------3332101234454332013220122-01110000111-221222211222 Q gi|254781053|r 161 IVSSTGALS-----------FSSV------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHC 221 (466) Q Consensus 161 ~~t~~~~~~-----------l~~~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~ 221 (466) ++..-+++. ..+. .|+++|||||.+|+..|-...|+|. +||+++|+++- +|....+ + T Consensus 421 V~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~eMPA~~~E----v 496 (639) T PRK12809 421 VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKE----V 496 (639) T ss_pred CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEE----C T ss_conf 387699999999864388644457754556777999899821899999999839987752154774579997003----0 Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEE---EE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE Q ss_conf 22222222223220023442014687-21-699---97-------------21332110000023204531210367840 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVY---RS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~---~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466) ...+++||+++++..+.+|..++++ +. +.+ .. ..|++..+++|.||+|+|++|+... .++ T Consensus 497 -~~A~EEGV~f~~~~~P~~i~~de~G~V~gv~~vr~~lgepd~~GRr~p~~i~Gse~~i~aD~VI~AiG~~~~~~~-~~~ 574 (639) T PRK12809 497 -VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP-WLQ 574 (639) T ss_pred -CCHHHCCEEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEECCEEEECCCCCCCCCC-CCC T ss_conf -101218738982788579996798639999999999567588888734760893699989999998878998875-334 Q ss_pred EEECCCCCCCCCCCCCC----CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC Q ss_conf 00012676422333776----3330268487024333543443000123201201112 Q gi|254781053|r 284 EIGINIDHRGCIEIGGQ----FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG 337 (466) Q Consensus 284 ~~gi~~~~~G~I~vd~~----~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 337 (466) ..|++++++|.|.+|+. +|||+|+|||+||+..++.+.-.|+.+|+.||+.|.. T Consensus 575 ~~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~G~stVV~AI~~Gr~AA~sI~~ 632 (639) T PRK12809 575 GSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639) T ss_pred CCCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 6785588999886178777676689999998278786736999999999999999999 No 54 >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional Probab=99.97 E-value=3.6e-31 Score=245.43 Aligned_cols=274 Identities=26% Similarity=0.324 Sum_probs=187.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. ..=.||. .+++ + T Consensus 441 KVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~--L~yGIP~--------------------------fRLP--k- 489 (760) T PRK12778 441 KVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGV--LKYGIPE--------------------------FRLP--N- 489 (760) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC--H- T ss_conf 8999897789999999999779906998058888975--7654861--------------------------1087--8- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC---CCEEECCCCCCC-CCC--CCCCCCCCC Q ss_conf 99999999987777787640043101100111002221023575211232---210000467665-244--457665321 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI---EAKNIVIATGSE-ASG--LPGMSIDFD 157 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i---~ad~iviATGs~-p~~--iP~~~~~~~ 157 (466) +++++.. ..+++.||++..+.. + + +.+.+ +.+ .||.++||||+. |+. +||.+. T Consensus 490 -----~iv~~eI----~~l~~lGV~~~~n~~-v-G-kdit~------~eL~~egyDAVfla~Ga~~pr~l~IpGe~l--- 548 (760) T PRK12778 490 -----KIVDVEI----ENLVKMGVTFEKDCI-V-G-KTISV------EELEEEGFKGIFVASGAGLPNFMNIPGENS--- 548 (760) T ss_pred -----HHHHHHH----HHHHHCCCEEECCCE-E-C-CCCCH------HHHHHCCCCEEEEECCCCCCCCCCCCCCCC--- T ss_conf -----9999999----999864979989957-7-8-86899------999758899999940678775289998667--- Q ss_pred CEEEEEECCCCC---C-------C----CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCC Q ss_conf 002453057411---1-------1----1133321012344543320132201220-111000011-1221222211222 Q gi|254781053|r 158 EQVIVSSTGALS---F-------S----SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHC 221 (466) Q Consensus 158 ~~~~~t~~~~~~---l-------~----~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~ 221 (466) ..+++..+++. + . ...|+++|||||.+|+.+|....|+|++ |++++|+++ -+|... +.+ T Consensus 549 -~gV~~a~eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~----~Ei 623 (760) T PRK12778 549 -INIMSSNEYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARL----EEV 623 (760) T ss_pred -CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCH----HHH T ss_conf -785877999999764430266678742269889999997609999999998399869997037721199998----999 Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCE--EE---EEE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE Q ss_conf 2222222222322002344201468721--69---997-------------21332110000023204531210367840 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQ--VV---YRS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~--v~---~~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466) +..+++||++++.+.+.++..++++.. +. ... .+|++.++++|.|++|+|..||...+ .. T Consensus 624 -~~A~eEGV~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~-~~ 701 (760) T PRK12778 624 -KHAKEEGIEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVP-SS 701 (760) T ss_pred -HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CC T ss_conf -9998579889916897899977996699999999997553777888735659946999999999998689886521-13 Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 00012676422333776333026848702433354344300012320120111 Q gi|254781053|r 284 EIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 284 ~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ..|++++++|.|.+|+.+|||.|+|||+|||..++.+.-.|+.+|+.||..|. T Consensus 702 ~~gl~~~~~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id 754 (760) T PRK12778 702 IPGLELGRKGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMN 754 (760) T ss_pred CCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 66725779997883989634898999867867680599999999999999999 No 55 >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] Probab=99.97 E-value=1.4e-31 Score=248.34 Aligned_cols=372 Identities=20% Similarity=0.291 Sum_probs=240.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 31999989866899999999879---939999379971502513667370989999999999998667558164775328 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) =-+||||-|+||..+..++.+.. ..++++-.++.. |+ ..+ .... +-...-+ T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-----nY---------------~Ri-~Ls~-----vl~~~~~ 57 (793) T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-----NY---------------NRI-LLSS-----VLAGEKT 57 (793) T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CC---------------CCE-EECC-----CCCCCCC T ss_conf 04899924640267999998308655048995267776-----64---------------410-0000-----0289866 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999877777876400431011001-110022210235752112322100004676652444576653210 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE 158 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~ 158 (466) .+++ .-....+.++++|+++.+. +-+++...-.|..+. .+++.||++|+||||.|..+|.......+ T Consensus 58 ~edi-----------~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~-g~~~~YDkLilATGS~pfi~PiPG~d~~~ 125 (793) T COG1251 58 AEDI-----------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-GRTVSYDKLIIATGSYPFILPIPGSDLPG 125 (793) T ss_pred HHHH-----------HCCCHHHHHHCCCEEECCCEEEEECCCCCEEECCC-CCEEECCEEEECCCCCCCCCCCCCCCCCC T ss_conf 8887-----------60322058775918971880478516765688468-85840432787057655656789987787 Q ss_pred EEE-EEECCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 024-530574111---1113332101234454332013220122011100001112-21222211222222222222232 Q gi|254781053|r 159 QVI-VSSTGALSF---SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-NGMDKEIAAHCLKIMSKQGMNFQ 233 (466) Q Consensus 159 ~~~-~t~~~~~~l---~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-~~~d~~~~~~~~~~l~~~gV~i~ 233 (466) ... -|.+|.+.+ .+--++-+|||||..|+|.|..|..+|.+||+++.++.+| ..+|+.....+++.|++.||+++ T Consensus 126 v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~ 205 (793) T COG1251 126 VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVL 205 (793) T ss_pred EEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEE T ss_conf 12783199999999998606885897551141678878874797348987336688976526889999999886060453 Q ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECC Q ss_conf 20023442014687216999721332110000023204531210367840000126764223337763330268487024 Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGD 313 (466) Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GD 313 (466) ++...+++...+... .++..+|. .+++|.|++|+|.+||++. ...+|+.+++ | |.||++||||+|+|||+|+ T Consensus 206 l~~~t~ei~g~~~~~--~vr~~DG~--~i~ad~VV~a~GIrPn~el--a~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGE 277 (793) T COG1251 206 LEKNTEEIVGEDKVE--GVRFADGT--EIPADLVVMAVGIRPNDEL--AKEAGLAVNR-G-IVVNDYMQTSDPDIYAVGE 277 (793) T ss_pred CCCHHHHHHCCCCEE--EEEECCCC--CCCCEEEEEECCCCCCCHH--HHHCCCCCCC-C-EEECCCCCCCCCCEEEHHH T ss_conf 132024564576403--67605687--3442069996230466176--7861766589-8-0563655556777665176 Q ss_pred CCCC----CCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCE-EEEEEEECCCCHH Q ss_conf 3335----434430001232012011122222-223333221000144551001478886234665-8999960447034 Q gi|254781053|r 314 VVRG----PMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSY-KVGKFPFSANGRA 387 (466) Q Consensus 314 v~g~----~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~~~~~~-~v~~~~~~~~~ra 387 (466) |+.. +.|.--++.|++++++|+.+.... +. ..++ +|. +|-.|+|+ ..+.+.-....+. T Consensus 278 cae~~g~~yGLVaP~yeqa~v~a~hl~~~~~~~y~-gsv~---stk------------LKv~Gvdl~S~GD~~e~~~~~~ 341 (793) T COG1251 278 CAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYE-GSVT---STK------------LKVSGVDVFSAGDFQETEGAES 341 (793) T ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCC-CCCC---HHH------------HCCCCCCEEECCCHHHCCCCCE T ss_conf 89761844001268999999999875067444554-5542---454------------3155663330111322489944 Q ss_pred HH-CCCCCE-EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHC Q ss_conf 41-889833-899999789986999999829988999999999987898789963 Q gi|254781053|r 388 RS-MNSIDG-FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLAR 440 (466) Q Consensus 388 ~~-~~~~~g-~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~ 440 (466) +. .+..++ +-|++. ++ ++|+|+-++|+.+. - +-+--+|..+..+.++.+ T Consensus 342 iv~~D~~~~iYKrlvL-~d-d~IvgavL~GDt~d-~-~~l~~li~~~~~~se~r~ 392 (793) T COG1251 342 IVFRDEQRGIYKKLVL-KD-DKIVGAVLYGDTSD-G-GWLLDLILKGADISEIRD 392 (793) T ss_pred EEEECCCCCCEEEEEE-EC-CEEEEEEEEEECCC-C-HHHHHHHHCCCCCCCCCH T ss_conf 8986541130048998-68-90999999742365-2-479999862788643552 No 56 >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=99.97 E-value=5e-30 Score=237.10 Aligned_cols=289 Identities=25% Similarity=0.300 Sum_probs=182.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||-+|.++|+.||++||++..||. | .||| .+.++|=..+ T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGL------------L--------------~YGI--PnmKLdK~e~ 204 (517) T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGL------------L--------------RYGI--PNMKLDKEEI 204 (517) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC------------C--------------CCCC--CCCCCCHHHH T ss_conf 6899756757999999985358838997436788863------------0--------------2488--8743373889 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEE--E------EECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCC Q ss_conf 999999999877777876400431011001--1------1002221023575211232210000467665-244457665 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGS--A------RIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSI 154 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~--a------~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~ 154 (466) ++||- .+|+..||++..+. | ++++-.++.|.. .+-.=+||.||+||||. ||+||.... T Consensus 205 v~RRi-----------~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~--~~L~~~fDAVVLa~Ga~~pRDLpI~GR 271 (517) T TIGR01317 205 VDRRI-----------DLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA--DELKEDFDAVVLATGATKPRDLPIPGR 271 (517) T ss_pred HHHHH-----------HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH--HHHHHHCCEEEEECCCCCCCCCCCCCC T ss_conf 99999-----------99874784201783004653444200022342687--998714693898337886010355776 Q ss_pred CCCCEEE----EEE-------CCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCC------ Q ss_conf 3210024----530-------5741111------1133321012344543320132201220-11100001112------ Q gi|254781053|r 155 DFDEQVI----VSS-------TGALSFS------SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTIL------ 210 (466) Q Consensus 155 ~~~~~~~----~t~-------~~~~~l~------~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll------ 210 (466) ++.+.++ +++ +++.+.. -..|+|||||||.+|..|-..=.|-|+. |+-++-.|++= T Consensus 272 EL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~ 351 (517) T TIGR01317 272 ELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKD 351 (517) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC T ss_conf 64660378655467548560885366678873542286789975787562245632355435523025688877677278 Q ss_pred ---CCCCCCCC-CCCCCCCCC-CC--CCCCCCHHHHHHHCCC-CCCE----------------EEEEEECCCCCCCEEEE Q ss_conf ---21222211-222222222-22--2232200234420146-8721----------------69997213321100000 Q gi|254781053|r 211 ---NGMDKEIA-AHCLKIMSK-QG--MNFQLNSKVSSVKKVK-GKAQ----------------VVYRSTDDEPINIEADA 266 (466) Q Consensus 211 ---~~~d~~~~-~~~~~~l~~-~g--V~i~~~~~v~~i~~~~-~~~~----------------v~~~~~~g~~~~i~~D~ 266 (466) |.+..-+. ++..+..++ -| .+-+ ...-+++..++ +.++ -.+..-.|.++..+||. T Consensus 352 npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdL 430 (517) T TIGR01317 352 NPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADL 430 (517) T ss_pred CCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHE T ss_conf 648657511330266898985179560123-1001335676884487888899999877898288886079752011012 Q ss_pred EEECCCCEE-EECCCCCEEEECCCCCCCCCC-CCCCCE---EECCC--CEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 232045312-103678400001267642233-377633---30268--4870243335434430001232012011 Q gi|254781053|r 267 VLVAAGRRP-YTKGLGLEEIGINIDHRGCIE-IGGQFQ---TSIST--IYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 267 vl~a~G~~P-n~~~l~Le~~gi~~~~~G~I~-vd~~~~---Ts~p~--IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) ||+|+|++. ...+ .|+..+|+.+.||.|. ..+..+ ||+|| |||||||-.+..|.-+|++|||.||... T Consensus 431 VLLAmGFvGPE~~G-lL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EGR~aA~aV 505 (517) T TIGR01317 431 VLLAMGFVGPEQAG-LLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEGRKAARAV 505 (517) T ss_pred EEEECCCCCCCCCC-CHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 33202675764200-3144444437787466323677765887189726876248988037788888878999986 No 57 >PTZ00318 NADH dehydrogenase; Provisional Probab=99.96 E-value=5e-31 Score=244.37 Aligned_cols=304 Identities=18% Similarity=0.274 Sum_probs=189.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) =-|||||||.||+++|..|.+...+|+||++...+ +++.+..+.. ...++... T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~--------------------lF~PLL~qvA-------tGtLe~r~ 63 (514) T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHM--------------------VFTPLLPQTT-------TGTLEFRS 63 (514) T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCC--------------------CCCHHHHHHH-------HCCCCHHH T ss_conf 85899997699999999738689828999999985--------------------0102167662-------05777577 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCC---CCC-------CCCCCCCEEECCCCCCCCCC-- Q ss_conf 999999999987777787640043101100111002--2210235---752-------11232210000467665244-- Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVK---GSS-------SEETIEAKNIVIATGSEASG-- 148 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~---~~~-------~~~~i~ad~iviATGs~p~~-- 148 (466) +.+-...+. ..+...+..++.+.+.=+| .++|... ..+ ...++.||+||||+||.++. T Consensus 64 I~~Pir~i~--------~~~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FG 135 (514) T PTZ00318 64 VCEPITRIQ--------PALAKLPNRFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFN 135 (514) T ss_pred EECCHHHHH--------HHHCCCCCEEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCC T ss_conf 222178876--------765136745999999887121078999740124665444456636428878986786556789 Q ss_pred CCCCCCCCCCEEEEEECCCCCCC----------CCC-------C---CCCCCCCCCCCCCCCHHHHHCC----------- Q ss_conf 45766532100245305741111----------113-------3---3210123445433201322012----------- Q gi|254781053|r 149 LPGMSIDFDEQVIVSSTGALSFS----------SVP-------K---NLLVIGAGVIGLELGSVWTRLG----------- 197 (466) Q Consensus 149 iP~~~~~~~~~~~~t~~~~~~l~----------~~P-------~---~ivIIGgG~ig~E~A~~~~~lG----------- 197 (466) +||... ..-.+-+-+++..++ .+| + +.+|||||++|+|+|..|+.+- T Consensus 136 ipGv~E--~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l 213 (514) T PTZ00318 136 VPGVEE--RAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSL 213 (514) T ss_pred CCCHHH--HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 998798--466578899999999999999998507889978932420278977776203289999999998876428123 Q ss_pred ---CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf ---20111000011122122221122222222222223220023442014687216999721332110000023204531 Q gi|254781053|r 198 ---SCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 198 ---~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) .+|+|++.+ ++|+.||+.+++..++.|++.||+++++. +.++. ++. +.. .+| +.++++.++|++|.+ T Consensus 214 ~~~~~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~--~~~--v~~--~~G--e~i~~~tvVWtAGV~ 283 (514) T PTZ00318 214 VPFCKVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVT--DKE--VFT--KSG--EVLPTGLVVWSTGVG 283 (514) T ss_pred CCCCEEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEE--CCE--EEE--CCC--CEEECCEEEEECCCC T ss_conf 010037886050-01210898999999999987894998362-89986--895--896--798--199866899915887 Q ss_pred EEECCCCCEEEECCCCCCCCCCCCCCCEE-----ECCCCEEECCCCC-----CCCCCCEECCCCCCEEECCCC----CC- Q ss_conf 21036784000012676422333776333-----0268487024333-----543443000123201201112----22- Q gi|254781053|r 275 PYTKGLGLEEIGINIDHRGCIEIGGQFQT-----SISTIYAIGDVVR-----GPMLAHKAEDEGIAVAEIISG----QK- 339 (466) Q Consensus 275 Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g-----~~~l~~~A~~~g~~aa~~i~~----~~- 339 (466) |+-- .+.++++.+++|+|.||++||. +.|||||+|||+. .|+++++|.+||+.+|+||.. ++ T Consensus 284 a~pl---~~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~~ 360 (514) T PTZ00318 284 PSPL---TKALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKPM 360 (514) T ss_pred CCCH---HHHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 6703---6656886457983788998676788899997688423346789989993078999999999999998639998 Q ss_pred -CCCCCCCCCCCEEEHHHHHHHHHC Q ss_conf -222233332210001445510014 Q gi|254781053|r 340 -GHVNYGIIPSVVYTHPEVASIGKT 363 (466) Q Consensus 340 -~~~~~~~ip~~vft~peia~vGlt 363 (466) .+|.|.... .+|++|.. T Consensus 361 ~~pF~Y~~~G-------smA~IG~~ 378 (514) T PTZ00318 361 MAPFVYRSLG-------SMVSLGDN 378 (514) T ss_pred CCCCEECCCC-------EEEEECCC T ss_conf 9996134666-------47884684 No 58 >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional Probab=99.96 E-value=7.1e-30 Score=235.99 Aligned_cols=273 Identities=23% Similarity=0.320 Sum_probs=182.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||||||||+||.+|+++|++|+++|+.+.+||. +.+ .||. .++.- ++ T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~-GIP~--------------------------yRLP~-~v 189 (560) T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRY-GIPG--------------------------YRLPR-DV 189 (560) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EEC-CCCC--------------------------CCCCH-HH T ss_conf 8999897789999999999769858996767888988-835-6875--------------------------44758-99 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466) ++.. ++ .+.+.||++..+.. +-.+ +.+.. -.=.||.++||+|+. ++ .+|+.+. .. T Consensus 190 -------l~~e---i~-~i~~~GV~~~~n~~-vg~d--it~~~----L~~~yDAV~la~Ga~~~r~l~i~G~d~----~g 247 (560) T PRK12771 190 -------LDAE---IQ-RILDLGVEVKLGVR-VGED--ITLEQ----LEGDYDAVFVAIGAQLGKRLPIPGEDA----AN 247 (560) T ss_pred -------HHHH---HH-HHHHCCCEEEECCE-ECCC--CCHHH----HHCCCCEEEECCCCCCCCCCCCCCCCC----CC T ss_conf -------9999---99-99964967983878-4465--67999----717788899916878776089788776----55 Q ss_pred EEEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 453057411------11113332101234454332013220122-01110000111-22122221122222222222223 Q gi|254781053|r 161 IVSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 161 ~~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~~~~l~~~gV~i 232 (466) +++.-+++. ...+.++++|||||.+|+..|....|+|. +||+++|+++- +|..+.+ +. ..+++||++ T Consensus 248 V~~al~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~E----i~-~A~eEGV~~ 322 (560) T PRK12771 248 VLDAVSFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFE----ID-DALREGVEI 322 (560) T ss_pred CEEHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH----HH-HHHHCCCEE T ss_conf 2405999999756897556886899899822899999999738976999831442028999899----98-787479568 Q ss_pred CCCHHHHHHHCCCCCCE-EEEEE----------ECCCCCCCEEEEEEECCCCEEEECCCCCEE-EECCCCCCCCCCCC-C Q ss_conf 22002344201468721-69997----------213321100000232045312103678400-00126764223337-7 Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQ-VVYRS----------TDDEPINIEADAVLVAAGRRPYTKGLGLEE-IGINIDHRGCIEIG-G 299 (466) Q Consensus 233 ~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~gi~~~~~G~I~vd-~ 299 (466) ++...+.++...++.+. +.+.. ..++..++++|.|++|+|+.|+.+.| +. .+++.+ +|.|.+| + T Consensus 323 ~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~ 399 (560) T PRK12771 323 NWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRN 399 (560) T ss_pred EECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCC T ss_conf 96346479980698598999999998899887889972675468999922578873000--236554717-998884787 Q ss_pred CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 633302684870243335434430001232012011 Q gi|254781053|r 300 QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 300 ~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) +++||.|+|||+||+..+|.+.-.|+.+|+.||..| T Consensus 400 ~~~Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~I 435 (560) T PRK12771 400 FRMTGRPGVFAGGDMVPGERTVTTAVGHGKKAARHI 435 (560) T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 665799886743654668418999999999999999 No 59 >PRK13984 putative oxidoreductase; Provisional Probab=99.96 E-value=6.3e-30 Score=236.38 Aligned_cols=275 Identities=24% Similarity=0.337 Sum_probs=177.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||.+|+++|++|+++|+.+..||. .. |||. +.+++- .+ T Consensus 285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGl--L~------------------------yGIP--~fRLpk-~v 335 (604) T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGV--MR------------------------YGIP--SYRLPD-EA 335 (604) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE--EE------------------------ECCC--CCCCCH-HH T ss_conf 8999898689999999999869868997456778972--33------------------------1587--222878-99 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-244--457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASG--LPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~--iP~~~~~~~~~~ 160 (466) +++.. ..++..||++..+.- + + +.+.+.. -.=.||.++||||+. |+. +||.+. .. T Consensus 336 -------v~rei----~~i~~~GV~f~~n~~-V-G-kDit~ee----L~~~yDAVfLa~Ga~~~r~L~IpGedl----~G 393 (604) T PRK13984 336 -------LDKDI----AFIEALGVKIHTNTR-V-G-KDISLEE----LREKHDAVFVSTGFTLGRSTRIPGSDH----PN 393 (604) T ss_pred -------HHHHH----HHHHHCCCEEECCCE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC T ss_conf -------99999----999972989976857-7-9-8478999----970589999953888776689899888----88 Q ss_pred EEEECCCCC-----------CCCCCCCCCCCCCCCCCCCCCHHHHHC-----C-CCHHHH-HHC-CCCCCCCCCCCCCCC Q ss_conf 453057411-----------111133321012344543320132201-----2-201110-000-111221222211222 Q gi|254781053|r 161 IVSSTGALS-----------FSSVPKNLLVIGAGVIGLELGSVWTRL-----G-SCVKII-EHS-GTILNGMDKEIAAHC 221 (466) Q Consensus 161 ~~t~~~~~~-----------l~~~P~~ivIIGgG~ig~E~A~~~~~l-----G-~~Vtli-~~~-~~ll~~~d~~~~~~~ 221 (466) +++.-+++. ..+++|+++|||||.+|+.+|-...|+ | .+|+++ .++ ..-+|....+ + T Consensus 394 V~~AldfL~~~~~~~~g~~~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~E----v 469 (604) T PRK13984 394 VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEE----I 469 (604) T ss_pred CEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHH----H T ss_conf 176799999998654257876666975899898188999999998730132477430551787873428998898----8 Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCE-EEEE------E---------ECCCCCCCEEEEEEECCCCEEEECCCCCEEE Q ss_conf 2222222222322002344201468721-6999------7---------2133211000002320453121036784000 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQ-VVYR------S---------TDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~------~---------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~ 285 (466) +..+++||++++...+.++...++.+. +.+. + .++++..+++|.||+|+|+.|+.+.|. +.. T Consensus 470 -~~A~EEGV~f~~~~~P~ei~~e~GkV~gv~~~~~l~~~D~~GR~~p~~~~gse~~i~aD~VI~AiGq~p~~~~l~-~~~ 547 (604) T PRK13984 470 -EEGLEEGVKIYPGWGPMEVVIENDKVKGVKFKKCLEVFDEEGRFNPKFDESEKIVVDADMVVEAIGQAPDYSYLP-EEI 547 (604) T ss_pred -HHHHHCCCEEEECCCCEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCHHH-HHH T ss_conf -999868878994777689994199699999999987798999880155699569998999999985888710002-353 Q ss_pred ECCCC-CCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 01267-6422333776333026848702433354344300012320120111 Q gi|254781053|r 286 GINID-HRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 286 gi~~~-~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) +..++ .+|.|.+|+++|||+|+|||+||+..++. .-.|+.+|+.||+.|. T Consensus 548 ~~~l~~~rG~I~~d~~~~Ts~pgVFAgGD~v~G~s-VV~AIa~GR~AA~~Id 598 (604) T PRK13984 548 KSKLEFVRGRIKTNEYRQTSVPWLFAGGDIVHGPD-IIHGVADGYWAAKGID 598 (604) T ss_pred CCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCH-HHHHHHHHHHHHHHHH T ss_conf 11232568859858998778999887778687628-9999999999999999 No 60 >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] Probab=99.96 E-value=6.7e-30 Score=236.18 Aligned_cols=386 Identities=24% Similarity=0.270 Sum_probs=254.1 Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 999989866899999999879--93999937997150-251366737098999999999999866755816477532899 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG-TCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GG-tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) ++|||+|+||+++|..+.+.. .++.++..++.... .|. +| + .+ .....+.. T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~----~~-~-------------------~~--~~~~~~~~ 54 (415) T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP----LS-L-------------------YV--GGGIASLE 54 (415) T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----CC-E-------------------EE--CCCCCCCH T ss_conf 98982559999999999850777885999523544555576----23-0-------------------53--34423400 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE Q ss_conf 99999999999877777876400431011001-11002221023575211232210000467665244457665321002 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV 160 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~ 160 (466) .++... . .. ...+++...+. ...+++..-.|...++ .+.||++++|||++|...|+. .... T Consensus 55 ~~~~~~-------~----~~-~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~yd~LvlatGa~~~~~~~~----~~~~ 116 (415) T COG0446 55 DLRYPP-------R----FN-RATGIDVRTGTEVTSIDPENKVVLLDDG--EIEYDYLVLATGARPRPPPIS----DWEG 116 (415) T ss_pred HHCCCC-------C----HH-HCCCEEECCCCEEEECCCHHCEEEECCC--CCCCCCEEECCCCCCCCCCCC----CCCC T ss_conf 211564-------2----34-3167286036468722612356991587--072652588147655667754----2224 Q ss_pred EEEEC---CCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCC Q ss_conf 45305---741111---1133321012344543320132201220111000011122122-2211222222222222232 Q gi|254781053|r 161 IVSST---GALSFS---SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMD-KEIAAHCLKIMSKQGMNFQ 233 (466) Q Consensus 161 ~~t~~---~~~~l~---~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d-~~~~~~~~~~l~~~gV~i~ 233 (466) .++.. ++..++ ..+++++|+|+|++|+|+|..+++.|.+||+++..+++++.+- +++++.+.+.|++.||+++ T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~ 196 (415) T COG0446 117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELL 196 (415) T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 43246899998765356677739998934999999999987799389997566423311218899999999997294898 Q ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCCCCCCCEEE-CCCCEEE Q ss_conf 20023442014687216999721332110000023204531210367840000-126764223337763330-2684870 Q gi|254781053|r 234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIEIGGQFQTS-ISTIYAI 311 (466) Q Consensus 234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~vd~~~~Ts-~p~IyA~ 311 (466) ++..+.+++...+...... ........+++|.+++++|.+||+... +..+ ......|+|.||++++|+ .++|||+ T Consensus 197 ~~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~vya~ 273 (415) T COG0446 197 LGTKVVGVEGKGNTLVVER-VVGIDGEEIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAA 273 (415) T ss_pred CCCEEEEEEECCCCEEEEE-EEEEEEEEECCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCEEEECCCCEECCCCEEEE T ss_conf 2652699992586215544-566530352233698789757761015--4654440137872999824542166888980 Q ss_pred CCCCCCC----------CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCE--EEHHHHHHHHHCHHHHHHCCCCEEEEEE Q ss_conf 2433354----------344300012320120111222222233332210--0014455100147888623466589999 Q gi|254781053|r 312 GDVVRGP----------MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVV--YTHPEVASIGKTEEQLKCEKKSYKVGKF 379 (466) Q Consensus 312 GDv~g~~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~v--ft~peia~vGlte~~a~~~~~~~~v~~~ 379 (466) |||+..+ ++.+.|..++.+++.++.+. .++ ...+++.. ..+...+.+|+++. ++...+ .+..+ T Consensus 274 GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~ 348 (415) T COG0446 274 GDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVV 348 (415) T ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC-CCCCCCEEEECCCEEEEEEEECCC--CEEEEE-EEEEE T ss_conf 3320024432220123101244554300245540344-333-323451144047614677750355--223345-55664 Q ss_pred EECCCCHHHHCC-CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCC Q ss_conf 604470344188-98338999997899869999998299889999999999878987899637843 Q gi|254781053|r 380 PFSANGRARSMN-SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHA 444 (466) Q Consensus 380 ~~~~~~ra~~~~-~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~ 444 (466) ......++.... ......|+.++.++++++|++. -. ....++.++.++..+.++.++...... T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (415) T COG0446 349 SGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALDAI 412 (415) T ss_pred CCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHHHHHCCCCHHHHHCCCC T ss_conf 14565311126776433303541155210022101-36-888864455541010120021201002 No 61 >KOG1336 consensus Probab=99.96 E-value=9e-30 Score=235.24 Aligned_cols=363 Identities=22% Similarity=0.322 Sum_probs=228.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 9999898668999999998799--39999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) ++|||+||+|..|+..+++.|. +.+|+-++..+ | +.. .+... + T Consensus 77 fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------p----------ydr-~~Ls~-~------------- 121 (478) T KOG1336 77 FVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------P----------YDR-ARLSK-F------------- 121 (478) T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC----------C----------CCC-HHCCC-C------------- T ss_conf 99976882033557667752887660787423347----------6----------540-00133-2------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-EC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 999999999987777787640043101100111-00--222102357521123221000046766524445766532100 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSAR-IV--SNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~-~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) .....+.+.......++..+|+++.+..- =+ ..+++.- ++.++++|++++|||||+|+.+|.......+ T Consensus 122 ----~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~---~~Ge~~kys~LilATGs~~~~l~~pG~~~~n- 193 (478) T KOG1336 122 ----LLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVL---GNGETLKYSKLIIATGSSAKTLDIPGVELKN- 193 (478) T ss_pred ----EEECCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCCEEEE---CCCCEEECCEEEEEECCCCCCCCCCCCCCCC- T ss_conf ----01014562105826676538237970305886414657996---7983530106999615766658988715611- Q ss_pred EEEEECCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCC Q ss_conf 245305741111------11333210123445433201322012201110000111221-22221122222222222223 Q gi|254781053|r 160 VIVSSTGALSFS------SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMNF 232 (466) Q Consensus 160 ~~~t~~~~~~l~------~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i 232 (466) +.+-+++-+.+ ...++++++|+|++|+|+|..+..-+.+||++++.+.++++ |-+++++.+++.++++||++ T Consensus 194 -v~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~ 272 (478) T KOG1336 194 -VFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKF 272 (478) T ss_pred -EEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEE T ss_conf -4665157888999987155856999775288999999997458357997267641043441778999999998459399 Q ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC Q ss_conf 22002344201468721699972133211000002320453121036784000012676422333776333026848702 Q gi|254781053|r 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG 312 (466) Q Consensus 233 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G 312 (466) ++++.+.+++....+....+...++ .++++|.+++.+|.+|||+. ++. |+.++++|+|.||+++|||+|||||+| T Consensus 273 ~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiG 347 (478) T KOG1336 273 YLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPNVYAIG 347 (478) T ss_pred EEECCEEECCCCCCCCEEEEEECCC--CEECCCEEEEEECCCCCCCC--CCC-CCEECCCCCEEEHHCEEECCCCCCCCC T ss_conf 9804200012478873799981248--77426769980166246654--434-410024687750000120358700114 Q ss_pred CCCCCCCC--C------C--EECCCCCCE--EECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEE Q ss_conf 43335434--4------3--000123201--2011122222223333221000144551001478886234665899996 Q gi|254781053|r 313 DVVRGPML--A------H--KAEDEGIAV--AEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFP 380 (466) Q Consensus 313 Dv~g~~~l--~------~--~A~~~g~~a--a~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~ 380 (466) ||+..|.- . | .|..+|+-+ +-++..+.. |+.+|.. .+-+. ++. .+..|..+. ... T Consensus 348 Dva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~---~~~lPyf---~t~~f--~~~---~~~~G~g~~--~~v 414 (478) T KOG1336 348 DVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA---YDYLPYF---YTRFF--SLS---WRFAGDGVG--DVV 414 (478) T ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHH---HHHHH--HHH---CCCCCCCCC--CEE T ss_conf 1440001333443544278899998876656443267664---1013147---77775--210---103576756--525 Q ss_pred ECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 04470344188983389999978998699999982998899999999998789878996 Q gi|254781053|r 381 FSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLA 439 (466) Q Consensus 381 ~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~ 439 (466) .- ...+...|+.-.++ +..+++-.-+ +-.|..+.++-.++++-.++.+. T Consensus 415 ~~------G~~e~~~f~ay~~k---~~~v~a~~~~-g~~~~~~~~a~l~~~~~~v~~~~ 463 (478) T KOG1336 415 LF------GDLEPGSFGAYWIK---GDKVGAVAEG-GRDEEVSQFAKLARQGPEVTSLK 463 (478) T ss_pred EE------CCCCCCCCEEEEEE---CCEEEEEECC-CCCHHHHHHHHHHHCCCCCHHHH T ss_conf 64------46666521456751---4179999536-88767899999986398620344 No 62 >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional Probab=99.95 E-value=6.5e-28 Score=221.70 Aligned_cols=278 Identities=24% Similarity=0.308 Sum_probs=186.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+||||++||..|++.|.+|+++|+.+..||... +| ||. .++. +.+ T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~-YG-IPe--------------------------FRLP-K~I 358 (944) T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLR-YG-IPE--------------------------FRLP-NQL 358 (944) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-EC-CCC--------------------------CCCC-HHH T ss_conf 679988576899999999977993399944787885589-55-876--------------------------6687-899 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466) ++... ..+++.||++....- + .+++.++.- ..=.||.+.||||+. |+ .+||... .. T Consensus 359 -------V~~EI----~~l~~lGV~f~~n~~--V-Gk~~tl~eL---~~eGydAVfIg~GAg~p~~l~IpGE~L----~G 417 (944) T PRK12779 359 -------IDDVV----EKIKLLGGRFVKNFV--V-GKTATLEDL---KAEGFWKIFVGTGAGLPTFMNVPGEHL----LG 417 (944) T ss_pred -------HHHHH----HHHHHCCEEEEECCE--E-CCCCCHHHH---HHCCCCEEEEEECCCCCCCCCCCCCCC----CC T ss_conf -------99999----999967839997856--4-776889999---768999899974788875689888777----68 Q ss_pred EEEECCCCC---C-------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCC Q ss_conf 453057411---1-------------11133321012344543320132201220111000011-122122221122222 Q gi|254781053|r 161 IVSSTGALS---F-------------SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDKEIAAHCLK 223 (466) Q Consensus 161 ~~t~~~~~~---l-------------~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~~~~~~~~~ 223 (466) +++..+++. + ....|+++|||||.+|+.+|-.-.|+|.+||+++|+.+ =||.-.++ + . T Consensus 418 V~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EE----i-~ 492 (944) T PRK12779 418 VMSANEFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----L-H 492 (944) T ss_pred EEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHH----H-H T ss_conf 2568999998643123566456864267898799989956699999998852987899984587658988999----9-8 Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEE---EE---EEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEE- Q ss_conf 222222223220023442014687216---99---972------------13321100000232045312103678400- Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQV---VY---RST------------DDEPINIEADAVLVAAGRRPYTKGLGLEE- 284 (466) Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v---~~---~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~- 284 (466) ..+++||++.+=+.+.++..++.+..+ .+ ..+ .+++..+++|.|++|+|..||-- + .+. T Consensus 493 hA~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpl-i-~~t~ 570 (944) T PRK12779 493 HALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-M-KDAE 570 (944) T ss_pred HHHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC-C-CCCC T ss_conf 8985792899814966552446897788999998535898877897887779716977799999057899951-0-1368 Q ss_pred EECCCCCCCCCCCCC-CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC Q ss_conf 001267642233377-633302684870243335434430001232012011122 Q gi|254781053|r 285 IGINIDHRGCIEIGG-QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ 338 (466) Q Consensus 285 ~gi~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~ 338 (466) -|++++++|.|.||+ .++||.|+|||.||++.+....-.|+..|+.||+-|.|. T Consensus 571 p~L~~~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~ 625 (944) T PRK12779 571 PGLKTNKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGE 625 (944) T ss_pred CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 7730167851998855576677777633550245678988755459999998546 No 63 >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Probab=99.95 E-value=1.5e-28 Score=226.37 Aligned_cols=274 Identities=25% Similarity=0.350 Sum_probs=185.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|.|||+|||||+||..|+++|++|+++|+.+..||. +. |||. +.++. + T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGv-L~-------------------------YGIP--eFRLP--K- 482 (993) T PRK12775 434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGV-LQ-------------------------YGIP--SFRLP--R- 482 (993) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-EE-------------------------ECCC--CCCCC--H- T ss_conf 0899783788999999999779964897168889972-68-------------------------4377--76788--8- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC----CCEEECCCCCCC-CC--CCCCCCCCC Q ss_conf 99999999987777787640043101100111002221023575211232----210000467665-24--445766532 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI----EAKNIVIATGSE-AS--GLPGMSIDF 156 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i----~ad~iviATGs~-p~--~iP~~~~~~ 156 (466) ++++... ..+++.||++..+.- + .+++.+ +.+ .||.+.|+||+. |+ .+||.+.. T Consensus 483 -----~IV~~EI----~~l~~lGVef~~n~~--V-Gkditl------~eL~~e~gyDAVFIg~GA~~~~~lgIpGE~l~- 543 (993) T PRK12775 483 -----DIIDREI----QRLKDIGVKFETNKV--V-GKTFTI------PQLMNDRGFDAVFVAAGAGAPTFLGIPGEFAG- 543 (993) T ss_pred -----HHHHHHH----HHHHHCCEEEECCCE--E-CCCCCH------HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC- T ss_conf -----9999999----999878949983888--6-560789------99953459898999558786731898988887- Q ss_pred CCEEEEEECCCCC------CC-----C----CCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCC Q ss_conf 1002453057411------11-----1----13332101234454332013220122-01110000111-2212222112 Q gi|254781053|r 157 DEQVIVSSTGALS------FS-----S----VPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAA 219 (466) Q Consensus 157 ~~~~~~t~~~~~~------l~-----~----~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~ 219 (466) .+++..+++. .. + +.|+++|||||.+++..|-.-.|+|. +||+++|+++- ||.-..+ T Consensus 544 ---GV~sA~eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~VtivYRRte~EMPA~~eE--- 617 (993) T PRK12775 544 ---RVYSANEFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAATVRCVYRRSEAEAPARIEE--- 617 (993) T ss_pred ---CCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHH--- T ss_conf ---81777999999763357767756786457996999899436999889999769986799996885638988999--- Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCE--EE---EEEE--C----------CCCCCCEEEEEEECCCCEEEECCCCC Q ss_conf 222222222222322002344201468721--69---9972--1----------33211000002320453121036784 Q gi|254781053|r 220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQ--VV---YRST--D----------DEPINIEADAVLVAAGRRPYTKGLGL 282 (466) Q Consensus 220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~--v~---~~~~--~----------g~~~~i~~D~vl~a~G~~Pn~~~l~L 282 (466) + ...+++||++++.+.+.++..++++.. +. ...+ | ++..++++|.|++|+|..||--.+ - T Consensus 618 -V-~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~pnpl~~-~ 694 (993) T PRK12775 618 -I-RHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTKPNPIIG-Q 694 (993) T ss_pred -H-HHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCC-C T ss_conf -9-879865939996269716786588639899999816679898889478678854888879999957799983100-3 Q ss_pred EEEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 0000126764223337763-33026848702433354344300012320120111 Q gi|254781053|r 283 EEIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 283 e~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ..-|++++++|.|.||+.. +||.|+|||.||++.++.+.-.|+.+|+.||+.|. T Consensus 695 ~~pgL~~~kwGtI~vDe~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAArsId 749 (993) T PRK12775 695 ATPGLALNKWGNIAADDDTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAAKSIA 749 (993) T ss_pred CCCCCEECCCCCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 6888222587708989887766888876365612557699999870899999999 No 64 >pfam02852 Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerization domain. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Probab=99.95 E-value=2.8e-27 Score=217.03 Aligned_cols=110 Identities=54% Similarity=0.856 Sum_probs=107.8 Q ss_pred CCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH Q ss_conf 32210001445510014788862346658999960447034418898338999997899869999998299889999999 Q gi|254781053|r 347 IPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAA 426 (466) Q Consensus 347 ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a 426 (466) ||+++||+||+|+||+||+||++++.++++.+.+|++++|++.+++++||+|+++|++|++|||+|++|++|+|+||.++ T Consensus 1 iP~~vft~PeiA~VGlte~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~~~ilGa~ivg~~A~elI~~~~ 80 (110) T pfam02852 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAA 80 (110) T ss_pred CCEEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHH T ss_conf 99488276802688688999997289861788667751888866898610799984478966899999098878999999 Q ss_pred HHHHCCCCHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 999878987899637843778899999999 Q gi|254781053|r 427 VLMEFGGSSEDLARICHAHPTMSEAVREAA 456 (466) Q Consensus 427 ~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa 456 (466) ++|++++|+++|.+++|+|||++|++++|+ T Consensus 81 ~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa 110 (110) T pfam02852 81 LAIKMGATVEDLANTIHAHPTLSEALVEAA 110 (110) T ss_pred HHHHCCCCHHHHHHCCCCCCCHHHHHHHHC T ss_conf 999869989999527667987789999759 No 65 >TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=99.94 E-value=2.9e-27 Score=217.00 Aligned_cols=279 Identities=25% Similarity=0.352 Sum_probs=192.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466) |.|||||||||.||-.|+|.|.+|+++||.+.+||. + .|||. ..++| +.++ T Consensus 146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGL--L------------------------tFGIP--sFKLd-K~V~ 196 (480) T TIGR01318 146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL--L------------------------TFGIP--SFKLD-KAVL 196 (480) T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--C------------------------CCCCC--CHHHH-HHHH T ss_conf 899778860257999875178559997477030760--1------------------------36888--51102-7899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCCC--- Q ss_conf 99999999877777876400431011001110022210235752112322100004676652---444576653210--- Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA---SGLPGMSIDFDE--- 158 (466) Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p---~~iP~~~~~~~~--- 158 (466) .++. .+|+..||++--+. ++ + +-|..+ .-.=+||.+-|-.|+.- -.+|+.+.+.-- T Consensus 197 ~~Rr-----------~if~~MGi~F~Ln~-Ev-G-rD~~l~----~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~AL 258 (480) T TIGR01318 197 SRRR-----------EIFTAMGIEFKLNT-EV-G-RDISLD----DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKAL 258 (480) T ss_pred HHHH-----------HHHHHCCCEEECCC-EE-E-CCCCHH----HHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHH T ss_conf 9999-----------99975892786581-65-0-325554----44311484896114334312877887742166642 Q ss_pred EEEE-EECCCCCCCC-----------C------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCC Q ss_conf 0245-3057411111-----------1------3332101234454332013220122-01110000111-221222211 Q gi|254781053|r 159 QVIV-SSTGALSFSS-----------V------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIA 218 (466) Q Consensus 159 ~~~~-t~~~~~~l~~-----------~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~ 218 (466) ..++ +.+.++.+++ . .|+|||+|||.++|.+-=.--|+|. +||=++|+|.- ||+--+ T Consensus 259 PFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrr--- 335 (480) T TIGR01318 259 PFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRR--- 335 (480) T ss_pred HHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH--- T ss_conf 47766152123788877744677766774234776689858887525788999981776131266536778787755--- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE------------------CCCCCCCEEEEEEECCCCEEEECCC Q ss_conf 2222222222222322002344201468721699972------------------1332110000023204531210367 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST------------------DDEPINIEADAVLVAAGRRPYTKGL 280 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~------------------~g~~~~i~~D~vl~a~G~~Pn~~~l 280 (466) ++.+ -+++||+|.+|.++.+|+.++++...-++.. .|.+..+++|.||+|-|+.|.... T Consensus 336 -EV~N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p- 412 (480) T TIGR01318 336 -EVAN-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP- 412 (480) T ss_pred -HHCC-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC- T ss_conf -5266-1111711321003158887788852335652356678677768777104786515146558971067898864- Q ss_pred CCEEEECCCCCCCCCCCC-------CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 840000126764223337-------76333026848702433354344300012320120111 Q gi|254781053|r 281 GLEEIGINIDHRGCIEIG-------GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 281 ~Le~~gi~~~~~G~I~vd-------~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) .|++-||++|++|.|.++ ..+||++|.|||-||+..+--|.-+|+.+||-||+-|. T Consensus 413 WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~ 475 (480) T TIGR01318 413 WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGIL 475 (480) T ss_pred HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHH T ss_conf 445177556346327751345567765335688475167701467220006676689999999 No 66 >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] Probab=99.93 E-value=4.7e-26 Score=208.18 Aligned_cols=289 Identities=25% Similarity=0.337 Sum_probs=182.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) |||+|+||||||-+||+++++.|.+.-++- +.|||+-+..-. -.+| + ..+.-.-++ T Consensus 212 yDVLvVGgGPAgaaAAIYaARKGiRTGl~a--erfGGQvldT~~-------------------IENf-I--sv~~teGpk 267 (520) T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG-------------------IENF-I--SVPETEGPK 267 (520) T ss_pred CEEEEECCCCCHHHHHHHHHHHCCHHHHHH--HHHCCEECCCCC-------------------HHHE-E--CCCCCCCHH T ss_conf 349998688631678999986121110015--651882000003-------------------3330-0--565454668 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCC-CE Q ss_conf 999999999987777787640043101100111002221023575211232210000467665244--457665321-00 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFD-EQ 159 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~-~~ 159 (466) +.......+++..-++-..-+. +.+.. .+ ....-++|+..++. .++++.+|+|||+|.+. +||...-.. +. T Consensus 268 l~~ale~Hv~~Y~vDimn~qra--~~l~~-a~--~~~~l~ev~l~nGa-vLkaktvIlstGArWRn~nvPGE~e~rnKGV 341 (520) T COG3634 268 LAAALEAHVKQYDVDVMNLQRA--SKLEP-AA--VEGGLIEVELANGA-VLKARTVILATGARWRNMNVPGEDEYRNKGV 341 (520) T ss_pred HHHHHHHHHHHCCCHHHHHHHH--HCCEE-CC--CCCCCEEEEECCCC-EECCCEEEEECCCCHHCCCCCCHHHHHHCCE T ss_conf 9999999876468245533434--20201-57--88860799954783-5113169984276420089985688731782 Q ss_pred EEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHH Q ss_conf 245-30574111111333210123445433201322012201110000111221222211222222222-2222322002 Q gi|254781053|r 160 VIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQLNSK 237 (466) Q Consensus 160 ~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~~~~ 237 (466) .++ .+|.-+ + ..|+++|||||..|+|.|--|+..-..|||++-.+.+- .-+.+++.|+. .+|++.+|+. T Consensus 342 ayCPHCDGPL-F--~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ii~na~ 412 (520) T COG3634 342 AYCPHCDGPL-F--KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTIITNAQ 412 (520) T ss_pred EECCCCCCCC-C--CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH------HHHHHHHHHHCCCCCEEEECCE T ss_conf 6688899865-1--79647998888612888876775555131121060321------5789999973279848982231 Q ss_pred HHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCC Q ss_conf 34420146872-1699972-133211000002320453121036784000012676422333776333026848702433 Q gi|254781053|r 238 VSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV 315 (466) Q Consensus 238 v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~ 315 (466) -+++..+.+++ .+.+++. .++...++-+-|++-+|..|||+. |+.. ++++++|-|.||.+..||+|+|||+|||+ T Consensus 413 Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-Vel~~rGEIivD~~g~T~vpGvFAAGD~T 489 (520) T COG3634 413 TTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVFAAGDCT 489 (520) T ss_pred EEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHH--HHCH-HHCCCCCCEEEECCCCCCCCCEEECCCCC T ss_conf 46876477501132778536785467874015899703468167--6151-11176764788557876787235337535 Q ss_pred CCCC-CCCEECCCCCCEEE Q ss_conf 3543-44300012320120 Q gi|254781053|r 316 RGPM-LAHKAEDEGIAVAE 333 (466) Q Consensus 316 g~~~-l~~~A~~~g~~aa~ 333 (466) ..|. .--.|+-+|.-|+- T Consensus 490 ~~~yKQIIIamG~GA~AaL 508 (520) T COG3634 490 TVPYKQIIIAMGEGAKASL 508 (520) T ss_pred CCCCCEEEEEECCCCHHHH T ss_conf 7741048998267513333 No 67 >KOG2495 consensus Probab=99.91 E-value=6e-26 Score=207.42 Aligned_cols=285 Identities=22% Similarity=0.344 Sum_probs=190.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -|||+|+|=+|.+....+-.--.+|++|.+...+==|-+ .||- ....++++-+ T Consensus 57 ~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----LpS~-----------------------~vGTve~rSI 109 (491) T KOG2495 57 RVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----LPST-----------------------TVGTVELRSI 109 (491) T ss_pred EEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC----CCCC-----------------------CCCCEEEHHH T ss_conf 399985752889998752664342499646300687314----6776-----------------------4462431034 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC--CCCCCCCC-----CCCCCCCCEEECCCCCCCCC--CCCCCCC Q ss_conf 999999999877777876400431011001110022--21023575-----21123221000046766524--4457665 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSN--NKILVKGS-----SSEETIEAKNIVIATGSEAS--GLPGMSI 154 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~--~~v~V~~~-----~~~~~i~ad~iviATGs~p~--~iP~~~~ 154 (466) .+-...+.. -+..++.++...+.-+|+ ++|.++.. ..+-.+.||++|+|+|+.+. .+||... T Consensus 110 vEPIr~i~r---------~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e 180 (491) T KOG2495 110 VEPIRAIAR---------KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEE 180 (491) T ss_pred HHHHHHHHH---------CCCCCCEEEECCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHH T ss_conf 556898862---------25787169862607606666679876412688861266026689996267777789975110 Q ss_pred CCCCEEEE-EECCCCCC----------CCCC----------CCCCCCCCCCCCCCCCHHHHHC--------------CCC Q ss_conf 32100245-30574111----------1113----------3321012344543320132201--------------220 Q gi|254781053|r 155 DFDEQVIV-SSTGALSF----------SSVP----------KNLLVIGAGVIGLELGSVWTRL--------------GSC 199 (466) Q Consensus 155 ~~~~~~~~-t~~~~~~l----------~~~P----------~~ivIIGgG~ig~E~A~~~~~l--------------G~~ 199 (466) +.+++ -..++.+. .++| -+.+|||||++|+|||..++.+ -.+ T Consensus 181 ---~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~ 257 (491) T KOG2495 181 ---NAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIK 257 (491) T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHEE T ss_conf ---10466643679999999998888752589985775405789998888762245677787787889986041320348 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE--E Q ss_conf 11100001112212222112222222222222322002344201468721699972133211000002320453121--0 Q gi|254781053|r 200 VKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY--T 277 (466) Q Consensus 200 Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn--~ 277 (466) |||++..|.+|+.||..+.+++++.+.+.||++.+++.|..++..+ ++...++|+..++++-.++|++|..|. + T Consensus 258 vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~~~~iPYG~lVWatG~~~rp~~ 333 (491) T KOG2495 258 VTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGEIEEIPYGLLVWATGNGPRPVI 333 (491) T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE----EEEECCCCCEEEECCEEEEECCCCCCCHHH T ss_conf 9842101457788899999999998643160343360799606718----999727883553032479954788776024 Q ss_pred CCCCCEEEECCCCCCC--CCCCCCCCEE-ECCCCEEECCCC---CCCCCCCEECCCCCCEEECCC Q ss_conf 3678400001267642--2333776333-026848702433---354344300012320120111 Q gi|254781053|r 278 KGLGLEEIGINIDHRG--CIEIGGQFQT-SISTIYAIGDVV---RGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 278 ~~l~Le~~gi~~~~~G--~I~vd~~~~T-s~p~IyA~GDv~---g~~~l~~~A~~~g~~aa~~i~ 336 (466) ..|. + .+++.| .+.||++||. +.+||||+|||+ +.++++.+|.+||..+|+++. T Consensus 334 k~lm-~----~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491) T KOG2495 334 KDLM-K----QIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491) T ss_pred HHHH-H----CCCCCCCEEEEEECEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 6675-2----4886673245520124406767627721322465676077898888899999999 No 68 >KOG0404 consensus Probab=99.89 E-value=3.6e-24 Score=194.44 Aligned_cols=281 Identities=22% Similarity=0.265 Sum_probs=178.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 19999898668999999998799399993799----71502513667370989999999999998667558164775328 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK----TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~----~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) .|+|||+|||+++||+++++..+|.+|+|..- ..||+-.- .. . ...++.| . ..+. T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-----------TT----~-veNfPGF--P---dgi~ 68 (322) T KOG0404 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-----------TT----D-VENFPGF--P---DGIT 68 (322) T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEE-----------EE----C-CCCCCCC--C---CCCC T ss_conf 38998358067778999765026756881111168688863456-----------52----0-1348999--7---5456 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE---EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCC Q ss_conf 99999999999998777778764004310110011---1002221023575211232210000467665244--457665 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA---RIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSI 154 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a---~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~ 154 (466) -+.++++.++..++ -|.+++.... ++. .+-+.+.++ .+.+++|.+|+|||+..++ +|+... T Consensus 69 G~~l~d~mrkqs~r-----------~Gt~i~tEtVskv~~s-skpF~l~td--~~~v~~~avI~atGAsAkRl~~pg~ge 134 (322) T KOG0404 69 GPELMDKMRKQSER-----------FGTEIITETVSKVDLS-SKPFKLWTD--ARPVTADAVILATGASAKRLHLPGEGE 134 (322) T ss_pred CHHHHHHHHHHHHH-----------HCCEEEEEEHHHCCCC-CCCEEEEEC--CCCEEEEEEEEECCCCEEEEECCCCCC T ss_conf 68899999988875-----------1646541002222236-897698843--772453069992163012465478775 Q ss_pred -CCCCEEEE---EECCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC Q ss_conf -32100245---3057411-11113332101234454332013220122011100001112212222112222-222222 Q gi|254781053|r 155 -DFDEQVIV---SSTGALS-FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCL-KIMSKQ 228 (466) Q Consensus 155 -~~~~~~~~---t~~~~~~-l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~-~~l~~~ 228 (466) .+.++.+- -+|.+-- ++ .|-++|||||..++|-|.+|.+++++|.++.|+|++-. +..++ +.+++. T Consensus 135 ~~fWqrGiSaCAVCDGaapifr--nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~np 206 (322) T KOG0404 135 GEFWQRGISACAVCDGAAPIFR--NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNP 206 (322) T ss_pred CHHHHCCCCHHHCCCCCCHHHC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEHHHHHH------HHHHHHHHHCCC T ss_conf 2577636405312367652115--87459985867887899988741437999997124467------789999875399 Q ss_pred CCCCCCCHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCC-CCCEEEC Q ss_conf 22232200234420146872-1699972-1332110000023204531210367840000126764223337-7633302 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI 305 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~ 305 (466) +|++++|+.+.+...+.+.. .+.+++. .++...++.+-+++++|..|||+. |+. ++++|++|+|.+- ....||+ T Consensus 207 nI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~Tsv 283 (322) T KOG0404 207 NIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSLTSV 283 (322) T ss_pred CEEEEECHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHH--HCC-CEEECCCCEEEECCCCCCCCC T ss_conf 76999311220020671402436987414475013202406997157826667--427-342136750896268644556 Q ss_pred CCCEEECCCCCC-CCCCCEECCCCCC Q ss_conf 684870243335-4344300012320 Q gi|254781053|r 306 STIYAIGDVVRG-PMLAHKAEDEGIA 330 (466) Q Consensus 306 p~IyA~GDv~g~-~~l~~~A~~~g~~ 330 (466) |++||+|||... +..+-.|...|.+ T Consensus 284 pG~FAAGDVqD~kyRQAvTaAgsGci 309 (322) T KOG0404 284 PGVFAAGDVQDKKYRQAVTAAGSGCI 309 (322) T ss_pred CCEEECCCCCHHHHHHHHHHHCCCHH T ss_conf 52453164312788998866335346 No 69 >KOG1346 consensus Probab=99.87 E-value=2.2e-22 Score=181.45 Aligned_cols=404 Identities=21% Similarity=0.266 Sum_probs=229.7 Q ss_pred EEEECCCHHHHHHH--HHHHHCCCCEEEEECCCCCCEEEEEECCCC-HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 99998986689999--999987993999937997150251366737-098999999999999866755816477532899 Q gi|254781053|r 5 VAVVGGGPAGYACA--IKAAQLKNKVAIIEKEKTYGGTCLNIGCIP-SKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 5 vvIIG~G~AG~~aA--~~~~~~G~~V~lIE~~~~~GGtC~~~GCiP-sK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) -+|||+|.|-.+++ +...+.+.+|.+|-.++.+- -++ =| ||-||....-- ..+....-.|+..+.++-|. T Consensus 181 ~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmR--PPLSKELW~~~dpn--~~k~lrfkqwsGkeRsiffe 253 (659) T KOG1346 181 YLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMR--PPLSKELWWYGDPN--SAKKLRFKQWSGKERSIFFE 253 (659) T ss_pred EEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCC---CCC--CCCCHHCEECCCCC--HHHHEEECCCCCCCCEEEEC T ss_conf 567737734432045665678873588603676776---568--97442113569997--15404301047864315755 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHCCCEEEEEEEEE-ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC- Q ss_conf 999999999-9987777787640043101100111-0022210235752112322100004676652444576653210- Q gi|254781053|r 82 KMMSYKKSI-VESNTQGINFLLKKNKIITYHGSAR-IVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE- 158 (466) Q Consensus 82 ~~~~~~~~~-v~~~~~~~~~~~~~~~V~~~~g~a~-~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~- 158 (466) . +.+ +. .+++. .....||.++.|.-. =++...-.|..+++ .+|.||+++||||.+|+.++.++..... T Consensus 254 p-----d~Ffvs--peDLp-~~~nGGvAvl~G~kvvkid~~d~~V~LnDG-~~I~YdkcLIATG~~Pk~l~~~~~A~~ev 324 (659) T KOG1346 254 P-----DGFFVS--PEDLP-KAVNGGVAVLRGRKVVKIDEEDKKVILNDG-TTIGYDKCLIATGVRPKKLQVFEEASEEV 324 (659) T ss_pred C-----CCCEEC--HHHCC-CCCCCCEEEEECCCEEEEECCCCEEEECCC-CEEEHHHEEEECCCCCCCCHHHHHCCHHH T ss_conf 8-----850448--57774-002685689734504786100076882278-57212104653277766415656438876 Q ss_pred ----EEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHH----CCCCHHHHH----HCCCCCCCCCCCCCCCCCC Q ss_conf ----024530574111111---3332101234454332013220----122011100----0011122122221122222 Q gi|254781053|r 159 ----QVIVSSTGALSFSSV---PKNLLVIGAGVIGLELGSVWTR----LGSCVKIIE----HSGTILNGMDKEIAAHCLK 223 (466) Q Consensus 159 ----~~~~t~~~~~~l~~~---P~~ivIIGgG~ig~E~A~~~~~----lG~~Vtli~----~~~~ll~~~d~~~~~~~~~ 223 (466) .++.+..|+-.+++. .+++.|||+|++|.|+|+.+.+ .|.+|+.+- .+..+|| +-+++...+ T Consensus 325 k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLP---eyls~wt~e 401 (659) T KOG1346 325 KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILP---EYLSQWTIE 401 (659) T ss_pred HHHEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH---HHHHHHHHH T ss_conf 62256674532788998765222258997575014567878877662068489984001287666517---888788899 Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCCCCCCE Q ss_conf 22222222322002344201468721699972133211000002320453121036784000012676-42233377633 Q gi|254781053|r 224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEIGGQFQ 302 (466) Q Consensus 224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~vd~~~~ 302 (466) .+++.||+++.|+.|.++........+ +..+| .++..|.|++|+|-.||++. .+..|+++|+ -|...||.-++ T Consensus 402 kir~~GV~V~pna~v~sv~~~~~nl~l--kL~dG--~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~ 475 (659) T KOG1346 402 KIRKGGVDVRPNAKVESVRKCCKNLVL--KLSDG--SELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELK 475 (659) T ss_pred HHHHCCCEECCCHHHHHHHHCCCCEEE--EECCC--CEEEECEEEEEECCCCCHHH--CCCCCCEECCCCCCEEEEHEEE T ss_conf 998569412541024666520212689--92588--76451359998357886433--0456715500037677412000 Q ss_pred EECCCCEEECCCC-------CCCCCCC--EECCCCCCEEECCCCCCCCCCCCC---------------------CCCC-E Q ss_conf 3026848702433-------3543443--000123201201112222222333---------------------3221-0 Q gi|254781053|r 303 TSISTIYAIGDVV-------RGPMLAH--KAEDEGIAVAEIISGQKGHVNYGI---------------------IPSV-V 351 (466) Q Consensus 303 Ts~p~IyA~GDv~-------g~~~l~~--~A~~~g~~aa~~i~~~~~~~~~~~---------------------ip~~-v 351 (466) .- .|||++||++ |....-| .|.-.||.|.+||.+...++.+.. .|++ | T Consensus 476 ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgV 554 (659) T KOG1346 476 AR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGV 554 (659) T ss_pred CC-CCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCEE T ss_conf 15-43365042445405311100003244324502002654444568764445025368863461122000367874145 Q ss_pred EEHHHHHHHHHCHHHHHHC-CCCEEEEEEE----------ECCCCHHHHCCCCCEEEE-EEEECCCCEEEEEEEECCCHH Q ss_conf 0014455100147888623-4665899996----------044703441889833899-999789986999999829988 Q gi|254781053|r 352 YTHPEVASIGKTEEQLKCE-KKSYKVGKFP----------FSANGRARSMNSIDGFVK-ILANEKSDRVEGVHIIGGSAG 419 (466) Q Consensus 352 ft~peia~vGlte~~a~~~-~~~~~v~~~~----------~~~~~ra~~~~~~~g~~k-li~~~~~~~ilG~~~vg~~a~ 419 (466) |..|.-+ -...|+.++ +-++...... -+..+-.....+..-|-| +||-.++++|+|.-+.. .- T Consensus 555 fA~p~s~---~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN--~F 629 (659) T KOG1346 555 FALPSSA---TRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN--LF 629 (659) T ss_pred EECCCCC---CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHH--HH T ss_conf 5336534---460232221588886654543322234577678887668421245673489996289489998545--31 Q ss_pred HHHHHHHHHHHCCCCHHHHH Q ss_conf 99999999998789878996 Q gi|254781053|r 420 EMIHEAAVLMEFGGSSEDLA 439 (466) Q Consensus 420 eli~~~a~ai~~~~t~~~l~ 439 (466) ..|.+.--.|+.+-..+||- T Consensus 630 nr~~~AR~II~d~kk~ddln 649 (659) T KOG1346 630 NRIGLARTIINDNKKYDDLN 649 (659) T ss_pred CCCHHHHHHHCCCCCHHHHH T ss_conf 55306688750552125689 No 70 >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] Probab=99.86 E-value=1.9e-22 Score=181.90 Aligned_cols=282 Identities=27% Similarity=0.332 Sum_probs=182.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .|.|||+||||++||..|++.|+.|+++|+.+..||. +.+| ||.- .++ T Consensus 125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~--------------------------kl~---- 172 (457) T COG0493 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDF--------------------------KLP---- 172 (457) T ss_pred EEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CCHH--------------------------HCC---- T ss_conf 7999888951555889998689879982666777447-9814-8446--------------------------464---- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE Q ss_conf 99999999987777787640043101100111002221023575211232210000467665-24--4457665321002 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV 160 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~ 160 (466) ++++++.. ..++..|+++..+..+ + ..+.. .+-.-++|.++++||+. |+ .+|+.+. .+ T Consensus 173 ----k~i~d~~i----~~l~~~Gv~~~~~~~v--G-~~it~----~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~g-- 233 (457) T COG0493 173 ----KDILDRRL----ELLERSGVEFKLNVRV--G-RDITL----EELLKEYDAVFLATGAGKPRPLDIPGEDA--KG-- 233 (457) T ss_pred ----CHHHHHHH----HHHHHCCCEEEECCEE--C-CCCCH----HHHHHHHCEEEEECCCCCCCCCCCCCCCC--CC-- T ss_conf ----20689999----9998749099986677--9-96789----99865328799932667887689888677--77-- Q ss_pred EEEECCCC---------CC--CCCC----CCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC--CCCCCCCCCCCCC Q ss_conf 45305741---------11--1113----332101234454332013220122-01110000111--2212222112222 Q gi|254781053|r 161 IVSSTGAL---------SF--SSVP----KNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI--LNGMDKEIAAHCL 222 (466) Q Consensus 161 ~~t~~~~~---------~l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l--l~~~d~~~~~~~~ 222 (466) +....+++ .. ...| ++++|||+|.++++++....++|. +|+.+++.++= ...+..-..+... T Consensus 234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~ 313 (457) T COG0493 234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEV 313 (457) T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHH T ss_conf 61687999999998603565446777789858998998888999888874175399992355665667854441067887 Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCEEE---EE--EE--------------CCCCCCCEEEEEEECCCCEEEECCCCCE Q ss_conf 22222222232200234420146872169---99--72--------------1332110000023204531210367840 Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVV---YR--ST--------------DDEPINIEADAVLVAAGRRPYTKGLGLE 283 (466) Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~--~~--------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le 283 (466) +....+|+...+.....++...+++.... .+ .. .+++..+++|.|+.|+|..|+-..+.+. T Consensus 314 ~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~ 393 (457) T COG0493 314 RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLL 393 (457) T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC T ss_conf 76775477543156763586658980840112212446665553445773226855875456688666136675432110 Q ss_pred EEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 000126764223337763-33026848702433354344300012320120111 Q gi|254781053|r 284 EIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 284 ~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) ..++..+.+|.|.+|+.+ +||+|++||.||+..+..+.-.|+.+|+.+++.+. T Consensus 394 ~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457) T COG0493 394 EFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457) T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH T ss_conf 012353767855103222124687636575442361341407640329998756 No 71 >KOG0399 consensus Probab=99.86 E-value=3.2e-21 Score=172.95 Aligned_cols=284 Identities=25% Similarity=0.282 Sum_probs=169.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) +-|.|||+||||+.||-+|.+.|+.|++.|+.+..||. +. ||+. +.++|-. T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l~-------------------------ygip--nmkldk~- 1836 (2142) T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-LM-------------------------YGIP--NMKLDKF- 1836 (2142) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE-------------------------ECCC--CCCHHHH- T ss_conf 47999746841466899986447679999715776745-66-------------------------1687--5213279- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEE Q ss_conf 999999999987777787640043101100111002221023575211232210000467665-2444576653210024 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVI 161 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~ 161 (466) ++++ +. .++...||+++... . ++ +++.. +. -.-+.|.+|+|+||. |+++|....+..+..+ T Consensus 1837 vv~r-------rv----~ll~~egi~f~tn~-e-ig-k~vs~--d~--l~~~~daiv~a~gst~prdlpv~grd~kgv~f 1898 (2142) T KOG0399 1837 VVQR-------RV----DLLEQEGIRFVTNT-E-IG-KHVSL--DE--LKKENDAIVLATGSTTPRDLPVPGRDLKGVHF 1898 (2142) T ss_pred HHHH-------HH----HHHHHHCCEEEEEC-C-CC-CCCCH--HH--HHHCCCEEEEEECCCCCCCCCCCCCCCCCCHH T ss_conf 9999-------99----99886185488503-2-25-65567--88--75305759998278877678889853343087 Q ss_pred ------------EEEC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCC--CCC----------- Q ss_conf ------------5305-7411111133321012344543320132201220-111000011122--122----------- Q gi|254781053|r 162 ------------VSST-GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILN--GMD----------- 214 (466) Q Consensus 162 ------------~t~~-~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~--~~d----------- 214 (466) .+++ +...+....|+++|||||.+|-.+-..-.|.|++ |--++--|++-+ ..| T Consensus 1899 ame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfr 1978 (2142) T KOG0399 1899 AMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFR 1978 (2142) T ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCHHHCCCEECCEEECCCCCCCCCCCCCCCCCCEEEE T ss_conf 99999875776504434453214679769998788766543142022032301022535889866688998866855788 Q ss_pred -----CCCC----------CCCCCCCCCCCCCCCCCHHHHHH--HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf -----2211----------22222222222223220023442--014687216999721332110000023204531210 Q gi|254781053|r 215 -----KEIA----------AHCLKIMSKQGMNFQLNSKVSSV--KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 215 -----~~~~----------~~~~~~l~~~gV~i~~~~~v~~i--~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) .+.. ..+.+.+....-...++-+..++ ++++.+.+ .+...++.++.+++|.+++|.|+..-- T Consensus 1979 vdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w-~~~ei~~see~~eadlv~lamgf~gpe 2057 (2142) T KOG0399 1979 VDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRW-QMKEINNSEEIIEADLVILAMGFVGPE 2057 (2142) T ss_pred EECCHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCE-EEEECCCCCEEEECCEEEEECCCCCCC T ss_conf 5055588998708996103645401321688746447899888876687736-898727851034424524320256841 Q ss_pred CCCCCEEEECCCCCCCCCCC-CCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 36784000012676422333-77633302684870243335434430001232012011 Q gi|254781053|r 278 KGLGLEEIGINIDHRGCIEI-GGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 278 ~~l~Le~~gi~~~~~G~I~v-d~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) .. ..+..+++.|+++.|.+ ++.+.|++++|||+|||-.+..|..+|+++||-+|+.+ T Consensus 2058 ~~-~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142) T KOG0399 2058 KS-VIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142) T ss_pred HH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHHHHHHH T ss_conf 33-35332755476545367776533345524640554678657999803326889999 No 72 >TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process. Probab=99.73 E-value=1.2e-17 Score=146.89 Aligned_cols=284 Identities=20% Similarity=0.239 Sum_probs=173.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH Q ss_conf 31999989866899999999879939999379971502513667370989999999999998667558164775328999 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK 82 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (466) =||+|||+|||||+||+.|++.|+||+|+|.+..+||. |++. .+..+|-+. T Consensus 177 CDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~IDG~P 227 (1026) T TIGR01372 177 CDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETIDGKP 227 (1026) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCCCCCC T ss_conf 04788788967999999996479889997067657775-----------5677------------------876017801 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEECCCCCCC-----------CC-CCCCCC--CCCCEEECCCCCCC Q ss_conf 9999999999877777876400431011001---1100222102-----------35-752112--32210000467665 Q gi|254781053|r 83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS---ARIVSNNKIL-----------VK-GSSSEE--TIEAKNIVIATGSE 145 (466) Q Consensus 83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~---a~~~~~~~v~-----------V~-~~~~~~--~i~ad~iviATGs~ 145 (466) ..+|..+-+..+...- .|.++.=+ |.. |.|.+. +. +...++ +|+|+++|||||+- T Consensus 228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~Y-D~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ 299 (1026) T TIGR01372 228 AADWAAATVAELEALP-------EVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGAL 299 (1026) T ss_pred HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEE-CCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCC T ss_conf 8999999999974189-------81674354055451-477478762011366778874853305777253456605764 Q ss_pred --C-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCC Q ss_conf --2-----44457665321002453057411111133321012344543320132201220-111000011122122221 Q gi|254781053|r 146 --A-----SGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEI 217 (466) Q Consensus 146 --p-----~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~ 217 (466) | +++||+.....-..|+.--. -...||++|.=.-..|.+.|--|.+.|.. |.||+.++.+-| T Consensus 300 ERPlVF~nND~PGvMlA~A~~~YlnRyg----V~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p------ 369 (1026) T TIGR01372 300 ERPLVFANNDRPGVMLAGAARTYLNRYG----VAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP------ 369 (1026) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH------ T ss_conf 4778688319532333679999888750----054870589821735899999999648950699961788752------ Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEE-------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC Q ss_conf 1222222222222232200234420146-872169997-------21332110000023204531210367840000126 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRS-------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI 289 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~-------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~ 289 (466) .+.+.-.+.|++++++..|...+... ....+.+.. ..|.++.++||.++++-|..|.+-...-..-.++. T Consensus 370 --~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W 447 (1026) T TIGR01372 370 --ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAW 447 (1026) T ss_pred --HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCC T ss_conf --479999875985986450221257721010468886244001135785247853898727766212220005883430 Q ss_pred CCC--CCCCCCCCCEEECCCCEEECCCCCCCCCCC---EECCCCCCEEECC Q ss_conf 764--223337763330268487024333543443---0001232012011 Q gi|254781053|r 290 DHR--GCIEIGGQFQTSISTIYAIGDVVRGPMLAH---KAEDEGIAVAEII 335 (466) Q Consensus 290 ~~~--G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~---~A~~~g~~aa~~i 335 (466) ++. -|+.=++..+=..+++-.+|=++|---|+. -+...|..+|.+. T Consensus 448 ~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~ 498 (1026) T TIGR01372 448 DEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA 498 (1026) T ss_pred CHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC T ss_conf 133431586675544366772785300010107999999999999999861 No 73 >pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase. Probab=99.73 E-value=1.2e-17 Score=147.07 Aligned_cols=311 Identities=17% Similarity=0.211 Sum_probs=165.6 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE-------CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC- Q ss_conf 9999898668999999998799399993799715025136-------67370989999999999998667558164775- Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI-------GCIPSKALLHASEMYSHIAKEAGDLGINIASC- 76 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~-------GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~- 76 (466) |+|||||++|+.+|..|.+.|.+++++|+++.+||+--.. .++-.-+..+.++. ...+.+|.+....+ T Consensus 4 VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Ntsk~----~~~fSDfP~P~~~p~ 79 (532) T pfam00743 4 VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSKE----MSCFSDFPFPEDYPN 79 (532) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH----HHCCCCCCCCCCCCC T ss_conf 9998972999999999987799829997799973506688887888676489706858900----513899989987889 Q ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCC--CCC--- Q ss_conf 32899999999999998777--7787640043101100111002--22102357521123221000046766--524--- Q gi|254781053|r 77 HLDLKKMMSYKKSIVESNTQ--GINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGS--EAS--- 147 (466) Q Consensus 77 ~~d~~~~~~~~~~~v~~~~~--~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs--~p~--- 147 (466) ....++++++.+..++...- .+++ +..|.-+.-...+.. ...|.+..++..++-.+|.+++|||- .|+ T Consensus 80 f~~~~~v~~YL~~YA~hF~L~~~Irf---~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~fD~ViVctG~~~~P~iP~ 156 (532) T pfam00743 80 FMHNSKFLEYLRMFAKHFDLLKYIQF---KTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNPHLPL 156 (532) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEC---CCEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCC T ss_conf 98989999999999998099673765---778999997667666861899998589088999779999466778687677 Q ss_pred -CCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCC-----C--- Q ss_conf -4457665321002453057411111-133321012344543320132201220111000011-1221222-----2--- Q gi|254781053|r 148 -GLPGMSIDFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDK-----E--- 216 (466) Q Consensus 148 -~iP~~~~~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~-----~--- 216 (466) .+||++ .+.++ ++.|.+.-+-+. ..|+++|||+|..|+++|..+++..++|++..|+.. ++++..+ + T Consensus 157 ~~~pG~e-~F~G~-iiHS~~Yk~~~~f~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~wv~pr~~~~G~P~D~~~ 234 (532) T pfam00743 157 ESFPGIN-KFKGQ-YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSRVSDWGYPWDMLL 234 (532) T ss_pred CCCCCHH-CCCCE-EEEHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 7789611-17967-987442798688599749997888984105999985278689997068532454555788378999 Q ss_pred ---------------CCCCC---------------------------------CCCCCCCCCCCCCCHHHHHHHCCCCCC Q ss_conf ---------------11222---------------------------------222222222232200234420146872 Q gi|254781053|r 217 ---------------IAAHC---------------------------------LKIMSKQGMNFQLNSKVSSVKKVKGKA 248 (466) Q Consensus 217 ---------------~~~~~---------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~ 248 (466) +.+.+ ...+....|.+.. .+.+++ +. T Consensus 235 ~~r~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~ygl~P~~~~~~~~p~i~d~l~~~I~~G~I~vkp--~I~~f~----~~ 308 (532) T pfam00743 235 TTRFCSFLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKLAKEPIVNDELPNRILCGAVKVKP--SVKEFT----ET 308 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECC--CEEEEE----CC T ss_conf 888999999871699999999999875158212588777776556640276777574258449837--915997----99 Q ss_pred EEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE-----ECCCCEEECCCCCCCCCCCE Q ss_conf 1699972133211000002320453121036784000012676422333776333-----02684870243335434430 Q gi|254781053|r 249 QVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT-----SISTIYAIGDVVRGPMLAHK 323 (466) Q Consensus 249 ~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~~~l~~~ 323 (466) .+.+. ||. ..-+.|.|++|||.+..... |++.=+...+ +.+ .=|.++ ..|++.-+|=+-..-.+.+. T Consensus 309 ~V~F~--DGt-~~e~iD~VI~aTGY~~~fPF--L~~~~~~~~~-~~~--~LYk~vfpp~l~~PtLAfIG~v~~~g~~~p~ 380 (532) T pfam00743 309 SAIFE--DGT-VEEDIDVVIFATGYTFSFPF--LEESLVKVET-NKI--SLYKYVFPPNLEKPTLAIIGLIQPLGSIIPT 380 (532) T ss_pred EEEEC--CCC-CCCCCCEEEECCCCCCCCCC--CCCCCCCCCC-CCE--EEEEEECCCCCCCCCEEEEEECCCCCCCCCH T ss_conf 89989--998-94369989989998988888--7755678788-840--0143533787789867999853534677526 Q ss_pred ECCCCCCEEECCCCC Q ss_conf 001232012011122 Q gi|254781053|r 324 AEDEGIAVAEIISGQ 338 (466) Q Consensus 324 A~~~g~~aa~~i~~~ 338 (466) +.+|++.+++.+.|. T Consensus 381 ~ElQArw~a~v~~G~ 395 (532) T pfam00743 381 VELQARWAVRVFKGL 395 (532) T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999997078 No 74 >KOG2755 consensus Probab=99.72 E-value=9.9e-18 Score=147.57 Aligned_cols=262 Identities=20% Similarity=0.288 Sum_probs=149.6 Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC---C Q ss_conf 99998986689999999987--993999937997150251366737098999999999999866755816477532---8 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL---D 79 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~---d 79 (466) .+|+|||.||.+||.+++.+ ..+++||-..+ ++.+-.-+..+.+....|.++.++.+- | T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass----------------~vksvtn~~~i~~ylekfdv~eq~~~elg~~ 65 (334) T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS----------------FVKSVTNYQKIGQYLEKFDVKEQNCHELGPD 65 (334) T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCH----------------HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC T ss_conf 599857614325899997538887389996417----------------8887761799998887627523416665500 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE Q ss_conf 99999999999998777778764004310110011100222102357521123221000046766524445766532100 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ 159 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~ 159 (466) +++++.. +..+ .. ..|.+ .+..+ +.+.|++++++||++|...-.. .+..-. T Consensus 66 f~~~~~~-----------v~~~-~s-------------~ehci--~t~~g-~~~ky~klcl~tg~kPklq~E~-~n~~Iv 116 (334) T KOG2755 66 FRRFLND-----------VVTW-DS-------------SEHCI--HTQNG-EKLKYFKLCLCTGYKPKLQVEG-INPKIV 116 (334) T ss_pred HHHHHHH-----------HHHH-CC-------------CCCEE--EECCC-CEEEEEEEEEECCCCCCEEECC-CCCEEE T ss_conf 7899876-----------6321-45-------------34458--82278-6666889999538873013247-785599 Q ss_pred EEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCC------- Q ss_conf 2453057411111---1333210123445433201322012201110000111221-2222112222222222------- Q gi|254781053|r 160 VIVSSTGALSFSS---VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQ------- 228 (466) Q Consensus 160 ~~~t~~~~~~l~~---~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~------- 228 (466) .+-+.|.+..++. ..|.+.|+|.|-|++|++.-+. +.+||.....+.+-.. |||.+++.+...|... T Consensus 117 ~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~ia 194 (334) T KOG2755 117 GIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIA 194 (334) T ss_pred EEECCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHH--CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHH T ss_conf 98437178999998762436999805723588888741--2304899625000010248248888676631356640224 Q ss_pred -----------------------------------------CCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEE Q ss_conf -----------------------------------------222322002344201468721699972-13321100000 Q gi|254781053|r 229 -----------------------------------------GMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADA 266 (466) Q Consensus 229 -----------------------------------------gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~ 266 (466) ......++.+. +....+...++..+. .+....+.+|. T Consensus 195 iKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~-~~d~~d~~sv~~~~~ek~~~~qlt~d~ 273 (334) T KOG2755 195 IKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVIT-STDTSDNLSVHYMDKEKMADNQLTCDF 273 (334) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEEE-ECCCHHHCCCCCCCCCCCCCCEEEEEE T ss_conf 4553443424720105765445851543103012314553220775532123-104401013100310036664363547 Q ss_pred EEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC Q ss_conf 23204531210367840000126764223337763330268487024333 Q gi|254781053|r 267 VLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR 316 (466) Q Consensus 267 vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g 316 (466) +++|+|..||++ . +-.-.++..+.|.|.||+.|+||.|++||+||++. T Consensus 274 ivSatgvtpn~e-~-~~~~~lq~~edggikvdd~m~tslpdvFa~gDvct 321 (334) T KOG2755 274 IVSATGVTPNSE-W-AMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT 321 (334) T ss_pred EEECCCCCCCCE-E-EECCHHHHCCCCCEEEHHHCCCCCCCEEEECCEEC T ss_conf 996134576743-8-96270342024580411105555653034122403 No 75 >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Probab=99.64 E-value=1.8e-16 Score=138.38 Aligned_cols=321 Identities=20% Similarity=0.263 Sum_probs=156.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC-CCHH---------HHHHHHH-----HH--H---HHH Q ss_conf 1999989866899999999879939999379971502513667-3709---------8999999-----99--9---999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC-IPSK---------ALLHASE-----MY--S---HIA 63 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC-iPsK---------~l~~~a~-----~~--~---~~~ 63 (466) +++|||||+||++||+.|++.|.+|.|+||++.+||.=....- .|.. .|...++ ++ . .+. T Consensus 126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~ 205 (622) T COG1148 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEVS 205 (622) T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCHHHCCCHHHHHCCCCCEEEEEEEEEEEEC T ss_conf 35998684898999999997598089994178645047765230787553232133023331258861465422465303 Q ss_pred HHHHHCCEECCC-C-CCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE----EE-EE Q ss_conf 866755816477-5-328--------------------999999999999987777787640043101100----11-10 Q gi|254781053|r 64 KEAGDLGINIAS-C-HLD--------------------LKKMMSYKKSIVESNTQGINFLLKKNKIITYHG----SA-RI 116 (466) Q Consensus 64 ~~~~~~g~~~~~-~-~~d--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g----~a-~~ 116 (466) -..++|-++... + .+| |..-+..++.+...+.+ .......|+..+. .. .- T Consensus 206 G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~q---aVp~~~~Id~~~c~~c~~C~~a 282 (622) T COG1148 206 GSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQ---AVPLNYNIDPKHCIECGLCEKA 282 (622) T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH---HCCCCCCCCHHHHCCCHHHHHC T ss_conf 5435347887306520011265532222347765675101254532356425645---5254532171650210356643 Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCEEEEEECCCCC----------------CCCCCCCCC Q ss_conf 022210235752112322100004676652444576653--21002453057411----------------111133321 Q gi|254781053|r 117 VSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSID--FDEQVIVSSTGALS----------------FSSVPKNLL 178 (466) Q Consensus 117 ~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~--~~~~~~~t~~~~~~----------------l~~~P~~iv 178 (466) .++..+..+.....-+++...+|+|||-.+.+......- +....++|+-++-. --+.||+++ T Consensus 283 c~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~PkrVa 362 (622) T COG1148 283 CPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVA 362 (622) T ss_pred CCCCCCCCCCCCCEEEEEECEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEE T ss_conf 99300013788717999715299972465557100433388877444447899987355799886177137999874689 Q ss_pred CC---CCCC--CCCCCC----HHH--------HHC--CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 01---2344--543320----132--------201--2201110000111221222211222222222222232200234 Q gi|254781053|r 179 VI---GAGV--IGLELG----SVW--------TRL--GSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 179 II---GgG~--ig~E~A----~~~--------~~l--G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) +| |+-. .+..+- +++ .+. ..+||+++..=|-.+.+ .-+...+.-++.||++..+ ++. T Consensus 363 FIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Iker~Pd~~v~I~YmDiRafG~~---yEefY~~~Q~~~GV~fIRG-rva 438 (622) T COG1148 363 FIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKD---YEEFYVRSQEDYGVRFIRG-RVA 438 (622) T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC---HHHHHHHHHHHHCCEEECC-CEE T ss_conf 999614656666882244899999987789988758985389999971246642---6999998788608536646-410 Q ss_pred HHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCC-EEEECCCCCCCCCCCC-CCC---EEECCCCEEEC Q ss_conf 420146872-1699972-133211000002320453121036784-0000126764223337-763---33026848702 Q gi|254781053|r 240 SVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGL-EEIGINIDHRGCIEIG-GQF---QTSISTIYAIG 312 (466) Q Consensus 240 ~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~L-e~~gi~~~~~G~I~vd-~~~---~Ts~p~IyA~G 312 (466) +|....++. .|...++ .++..++++|+|++++|..|.-..-.+ ..+|++.++.||+.-. +.+ +|+.+|||.+| T Consensus 439 eI~e~p~~~liV~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG 518 (622) T COG1148 439 EIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAG 518 (622) T ss_pred EEEECCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 16887998369998603467311123337999504445765688887548651787760347877664555678579810 Q ss_pred CCCCCCCCCCEECCCCCCEE Q ss_conf 43335434430001232012 Q gi|254781053|r 313 DVVRGPMLAHKAEDEGIAVA 332 (466) Q Consensus 313 Dv~g~~~l~~~A~~~g~~aa 332 (466) -+.|+.... .+..||..|| T Consensus 519 ~aqgPkdI~-~siaqa~aAA 537 (622) T COG1148 519 AAQGPKDIA-DSIAQAKAAA 537 (622) T ss_pred CCCCCCCHH-HHHHHHHHHH T ss_conf 036984277-8887767889 No 76 >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] Probab=99.62 E-value=6.7e-16 Score=134.24 Aligned_cols=195 Identities=23% Similarity=0.291 Sum_probs=107.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH Q ss_conf 33199998986689999999987993-99993799715025136673709899999999999986675581647753289 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL 80 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~-V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~ 80 (466) ++||+|||||++|+.+|..|+++|.. ++++||...+||+ .|+-+-|+-.+......+ .+..+.+.....--++ T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~-W~~~ry~~l~~~~p~~~~-----~~~~~p~~~~~~~~~~ 81 (443) T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-WRYNRYPGLRLDSPKWLL-----GFPFLPFRWDEAFAPF 81 (443) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCCEEEECCCCCCC-----CCCCCCCCCCCCCCCC T ss_conf 5548998987889999999997599867999705766786-555668716767974011-----5888887765567776 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC-CCCCCCCCCCCC-CCCEEECCCCCC--CCC--CCCCCCC Q ss_conf 9999999999998777778764004310110011100222-102357521123-221000046766--524--4457665 Q gi|254781053|r 81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN-KILVKGSSSEET-IEAKNIVIATGS--EAS--GLPGMSI 154 (466) Q Consensus 81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~-~v~V~~~~~~~~-i~ad~iviATGs--~p~--~iP~~~~ 154 (466) ..+..+.....+......+ +.-..+|+. +.+.+.. .-.|..+.+.+. +++|+||+|||- .|. .+||.+ T Consensus 82 ~~~~~y~~~~~~~y~~~~~-i~~~~~v~~----~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~- 155 (443) T COG2072 82 AEIKDYIKDYLEKYGLRFQ-IRFNTRVEV----ADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLD- 155 (443) T ss_pred CCHHHHHHHHHHHHCCEEE-EECCCCEEE----EEEECCCCEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCCCCC- T ss_conf 4389999999998356045-021452568----8630588706999648875225126799830578989788878866- Q ss_pred CCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC Q ss_conf 321002453057411-1111333210123445433201322012201110000111 Q gi|254781053|r 155 DFDEQVIVSSTGALS-FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI 209 (466) Q Consensus 155 ~~~~~~~~t~~~~~~-l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l 209 (466) .+.+. ++.|.+.-+ .+-..|+|+|||+|..|++++..+.+.|.+||+++|++.. T Consensus 156 ~f~g~-~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443) T COG2072 156 EFKGR-ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443) T ss_pred CCCCC-EECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 66863-44410169613427887999898703999999997306717898517975 No 77 >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] Probab=99.47 E-value=3e-13 Score=114.91 Aligned_cols=321 Identities=19% Similarity=0.278 Sum_probs=172.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC---EEEEEECCC---C-HHHHH---HHHHHH---HHHHHHHHH Q ss_conf 31999989866899999999879-9399993799715---025136673---7-09899---999999---999986675 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYG---GTCLNIGCI---P-SKALL---HASEMY---SHIAKEAGD 68 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~G---GtC~~~GCi---P-sK~l~---~~a~~~---~~~~~~~~~ 68 (466) ||++.||-||+.++.|..+...+ ++...+|+.+.+- |. +..||- | -|-|. .+.+.+ .++..+..- T Consensus 6 ~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~RL 84 (436) T COG3486 6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHGRL 84 (436) T ss_pred EEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHH T ss_conf 026887048327899987350257525787347888767875-5578644450056325535899830799999870657 Q ss_pred CC-EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE---EEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC Q ss_conf 58-16477532899999999999998777778764004310---110011100222102357521123221000046766 Q gi|254781053|r 69 LG-INIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKII---TYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS 144 (466) Q Consensus 69 ~g-~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~---~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs 144 (466) |. +..+...+.-.+.-.+-++..+.+ ...++ ...|+ .+.+.+. -+..+.+.++ .+++++++||.+|. T Consensus 85 y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf---g~~V~~i~~~~~d~~----~~~~~~t~~~-~~y~ar~lVlg~G~ 155 (436) T COG3486 85 YEFLNYETFHIPRREYNDYCQWAASQL-PSLRF---GEEVTDISSLDGDAV----VRLFVVTANG-TVYRARNLVLGVGT 155 (436) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCC---CCEECCCCCCCCCCE----EEEEEECCCC-CEEEEEEEEECCCC T ss_conf 655420023555888999999998408-72336---870122102477630----5899982788-47886037982599 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCC-CCCCC--CCCCCCCCCCCCCCCCHHH-HH---CCCCHHHHHHCCCCCCC----- Q ss_conf 5244457665321002453057411-11113--3321012344543320132-20---12201110000111221----- Q gi|254781053|r 145 EASGLPGMSIDFDEQVIVSSTGALS-FSSVP--KNLLVIGAGVIGLELGSVW-TR---LGSCVKIIEHSGTILNG----- 212 (466) Q Consensus 145 ~p~~iP~~~~~~~~~~~~t~~~~~~-l~~~P--~~ivIIGgG~ig~E~A~~~-~~---lG~~Vtli~~~~~ll~~----- 212 (466) +|. ||..-....+..++.+.+.++ ..+++ ++|+|||+|..|.|+-.-+ .+ ...++.++.|+..++|. T Consensus 156 ~P~-IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf 234 (436) T COG3486 156 QPY-IPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKF 234 (436) T ss_pred CCC-CCHHHHCCCCCCEEEHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHH T ss_conf 767-8767737575332524889876078654762899847823999999997277875731001113677772433413 Q ss_pred ----CCCCCCCC------------------------------C-----CCCC--CCCCCCCCCCHHHHHHHCCCCC-CEE Q ss_conf ----22221122------------------------------2-----2222--2222223220023442014687-216 Q gi|254781053|r 213 ----MDKEIAAH------------------------------C-----LKIM--SKQGMNFQLNSKVSSVKKVKGK-AQV 250 (466) Q Consensus 213 ----~d~~~~~~------------------------------~-----~~~l--~~~gV~i~~~~~v~~i~~~~~~-~~v 250 (466) |.|+..+. + .+.+ .+..|+++.++++..++...++ ..+ T Consensus 235 ~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l 314 (436) T COG3486 235 GLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRL 314 (436) T ss_pred HHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEEEE T ss_conf 45442810377884399899998876117532345888999999999998735888770001355213555278953888 Q ss_pred EEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEE--ECCCCCCCCCCCCCCCEEEC-----CCCEEECCCC-----CC Q ss_conf 99972-133211000002320453121036784000--01267642233377633302-----6848702433-----35 Q gi|254781053|r 251 VYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEI--GINIDHRGCIEIGGQFQTSI-----STIYAIGDVV-----RG 317 (466) Q Consensus 251 ~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~--gi~~~~~G~I~vd~~~~Ts~-----p~IyA~GDv~-----g~ 317 (466) .++.. .++..+++.|.|++|||.+..+..+ |+-+ .+..++.|..+|++.++... -.||+.|=.. |. T Consensus 315 ~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~ 393 (436) T COG3486 315 TLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGA 393 (436) T ss_pred EEEECCCCCCEEEEEEEEEEECCCCCCCCHH-HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCEEEEECCCCCCCCCCC T ss_conf 8764257983688861899803456678646-666778624564687476474565037987630798146433466677 Q ss_pred CCCCCEECCCCCCEEECC Q ss_conf 434430001232012011 Q gi|254781053|r 318 PMLAHKAEDEGIAVAEII 335 (466) Q Consensus 318 ~~l~~~A~~~g~~aa~~i 335 (466) |.|.-.|++.+.++...+ T Consensus 394 pdLsl~a~Raa~I~~~L~ 411 (436) T COG3486 394 PDLSLGAWRAAVILNSLL 411 (436) T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 540279999999999873 No 78 >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated Probab=99.47 E-value=1.1e-13 Score=118.24 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=74.7 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE------EC-----CCCCEEE Q ss_conf 112222222222222322002344201468721699972133211000002320453121------03-----6784000 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY------TK-----GLGLEEI 285 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn------~~-----~l~Le~~ 285 (466) +.+.+.+.|++.|+.+..+.+|.+.+..++.+...+ ..++....+.+|.+++|+|.-=. -+ -++|+-. T Consensus 264 L~~aL~~~~~~~Gg~~~~g~~V~~~~~~~~~v~~v~-t~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~L~V~ 342 (425) T PRK05329 264 LQNALRRRFERLGGVLMPGDEVLRATCEDGRVTGIW-TRNHADIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVL 342 (425) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEE-ECCCCCEEEECCEEEEECCCCCCCCEECCCCCEEEECCCCCCC T ss_conf 999999999986978966998887898699899999-0278842761376999037766698853689256104599889 Q ss_pred E---------------CCCCCCCCCCCCCCCEE-----ECCCCEEECCCCCCCCCCC------EECCCCCCEEECCC Q ss_conf 0---------------12676422333776333-----0268487024333543443------00012320120111 Q gi|254781053|r 286 G---------------INIDHRGCIEIGGQFQT-----SISTIYAIGDVVRGPMLAH------KAEDEGIAVAEIIS 336 (466) Q Consensus 286 g---------------i~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~~~l~~------~A~~~g~~aa~~i~ 336 (466) . =.+..-| +.||+.||. ..+|+||+|-+.+++.-.. +|.-.|..|+++|. T Consensus 343 ~~~~R~~W~~~~ff~~hp~~~~G-V~tD~~lrP~~g~~~~~NL~aaGsvL~G~d~~~e~~G~GVAi~Ta~~Aa~~i~ 418 (425) T PRK05329 343 QTADRAEWYDGDFFAPHPFQQFG-VATDDTLRPSQGGQVIENLYAAGAVLGGYDPIAEGCGSGVAVATALHAAEQIA 418 (425) T ss_pred CCCCHHHCCCCCCCCCCHHHHCC-CEECCCCCCCCCCCCCCCCEEECHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99885663330135778255458-67787778257985345516724133288767737774288999999999999 No 79 >KOG1399 consensus Probab=99.45 E-value=2e-12 Score=108.95 Aligned_cols=303 Identities=20% Similarity=0.253 Sum_probs=147.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH----HH---HHHHCCEEC Q ss_conf 93319999898668999999998799399993799715025136673709899999999999----98---667558164 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI----AK---EAGDLGINI 73 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~----~~---~~~~~g~~~ 73 (466) |+=+|+|||||||||.+|..|.+.|++++++|+.+.+||+ +.=+-+... .+ +.+++.+ .+ ...+|.... T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl--W~y~~~~~~-~~-ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448) T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL--WKYTENVEV-VH-SSVYKSLRTNLPKEMMGYSDFPFPE 80 (448) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCE--EEECCCCCC-CC-CCHHHHHHCCCCHHHHCCCCCCCCC T ss_conf 7785489785668889999998779983699705874545--860576565-54-3243421046884442579989754 Q ss_pred CCC-C-CCHHHHHHHHHHHHHHHHH--HHHHHHHCCCEEEEE-EEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCC- Q ss_conf 775-3-2899999999999998777--778764004310110-011100222102357521-12322100004676652- Q gi|254781053|r 74 ASC-H-LDLKKMMSYKKSIVESNTQ--GINFLLKKNKIITYH-GSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEA- 146 (466) Q Consensus 74 ~~~-~-~d~~~~~~~~~~~v~~~~~--~~~~~~~~~~V~~~~-g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p- 146 (466) ..+ . .+-.+++++.+...+...- .+++.-+...|+-.. |.. .|...+..+ .+..-+|.+++|||-.. T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW------~V~~~~~~~~~~~~ifd~VvVctGh~~~ 154 (448) T KOG1399 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW------RVTTKDNGTQIEEEIFDAVVVCTGHYVE 154 (448) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCE------EEEEECCCCCEEEEEEEEEEECCCCCCC T ss_conf 5711178888999999999873583462673465799840567741------6898148864058996389995567688 Q ss_pred CCCCCCCC----CCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 44457665----321002453057411111-1333210123445433201322012201110000111221222211222 Q gi|254781053|r 147 SGLPGMSI----DFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHC 221 (466) Q Consensus 147 ~~iP~~~~----~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~ 221 (466) +.+|.++. .+.++ +++|.+.-.-+. .-|+++|||.|..|+|++--+++-..+|++..++... .... T Consensus 155 P~~P~~~g~~~~~f~G~-~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~--------~~~~ 225 (448) T KOG1399 155 PRIPQIPGPGIESFKGK-IIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV--------HVEP 225 (448) T ss_pred CCCCCCCCCCHHHCCCC-CEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCC--------CCCC T ss_conf 98876788864006872-11403215765446866999887814899999999860676146430223--------3245 Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE--CCCCCCCCCCCCC Q ss_conf 22222222223220023442014687216999721332110000023204531210367840000--1267642233377 Q gi|254781053|r 222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG--INIDHRGCIEIGG 299 (466) Q Consensus 222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g--i~~~~~G~I~vd~ 299 (466) ...+. .++-.+.. +.++.++. ..+... .....+|.+++|+|..=.... |+..+ ...+++ +-+ T Consensus 226 ~~~~~-~~~~~~~~--i~~~~e~~----~~~~~~---~~~~~~D~ii~ctgy~y~fPf--l~~~~~~~~~~~~----~~p 289 (448) T KOG1399 226 PEILG-ENLWQVPS--IKSFTEDG----SVFEKG---GPVERVDRIIFCTGYKYKFPF--LETLGLGTVRDNI----VGP 289 (448) T ss_pred CCEEE-CCEEECCC--CCCCCCCC----EEEECC---CEEEEEEEEEEEEEEEEECCE--ECCCCCEEECCCC----CCC T ss_conf 55220-33077254--33435752----189837---415876459995346760431--2368750663676----455 Q ss_pred CCEEECCCCEEECC-CCCCC---CCCCEECCCCCCEEECCCCC Q ss_conf 63330268487024-33354---34430001232012011122 Q gi|254781053|r 300 QFQTSISTIYAIGD-VVRGP---MLAHKAEDEGIAVAEIISGQ 338 (466) Q Consensus 300 ~~~Ts~p~IyA~GD-v~g~~---~l~~~A~~~g~~aa~~i~~~ 338 (466) ......|..++-|. -.+-+ ...+.-..|++.++..+.|. T Consensus 290 l~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448) T KOG1399 290 LYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448) T ss_pred HHEECCCHHHCCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCC T ss_conf 1001143210765532345723676324301344467644488 No 80 >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.44 E-value=2.1e-12 Score=108.80 Aligned_cols=39 Identities=36% Similarity=0.417 Sum_probs=35.4 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 93-3199998986689999999987993999937997150 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) |+ +||+|||+|.||++||+++++.|.+|+|+++.+..+| T Consensus 1 m~~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~~ 40 (589) T PRK08641 1 MAKKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 9868789989869999999999875997799977788988 No 81 >pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=99.42 E-value=8e-15 Score=126.42 Aligned_cols=81 Identities=33% Similarity=0.557 Sum_probs=76.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE Q ss_conf 32101234454332013220122011100001112212222112222222222222322002344201468721699972 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST 255 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~ 255 (466) |++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++++++++..+++..+++.++ T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~g 80 (82) T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLETG 80 (82) T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECC T ss_conf 99999988999999999986392789981257330227988999999999866999974999999999699999999889 Q ss_pred C Q ss_conf 1 Q gi|254781053|r 256 D 256 (466) Q Consensus 256 ~ 256 (466) + T Consensus 81 d 81 (82) T pfam00070 81 D 81 (82) T ss_pred C T ss_conf 9 No 82 >PRK08071 L-aspartate oxidase; Provisional Probab=99.37 E-value=3.7e-12 Score=106.98 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=32.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 319999898668999999998799399993799715025 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) .||+|||+|.||++||+++++. ++|+||+|....+|.+ T Consensus 4 ~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~~~s 41 (510) T PRK08071 4 ADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKRNSNS 41 (510) T ss_pred CCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCH T ss_conf 9999999659999999983658-9879997989999742 No 83 >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. Probab=99.36 E-value=8.7e-13 Score=111.60 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=67.6 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE------EC-----CCCCEEE Q ss_conf 112222222222222322002344201468721699972133211000002320453121------03-----6784000 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY------TK-----GLGLEEI 285 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn------~~-----~l~Le~~ 285 (466) +.+.+.+.|++.|+.+..+.+|.+.+..++.+...+. .++....+.+|.+++|+|.-=. -+ -++|+-. T Consensus 265 L~~~L~~~f~~~Gg~~~~g~~V~~~~~~~~~v~~v~t-~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~LdV~ 343 (419) T TIGR03378 265 LEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHT-RNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVL 343 (419) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCCCCEEEECCEEEECCCCCCCCCEECCCCCEEEECCCCCCC T ss_conf 9999999999869789669979989987998999993-378722650576999146654698853689765205699889 Q ss_pred EC---------------CCCCCCCCCCCCCCEEE-----CCCCEEECCCCCCCC Q ss_conf 01---------------26764223337763330-----268487024333543 Q gi|254781053|r 286 GI---------------NIDHRGCIEIGGQFQTS-----ISTIYAIGDVVRGPM 319 (466) Q Consensus 286 gi---------------~~~~~G~I~vd~~~~Ts-----~p~IyA~GDv~g~~~ 319 (466) .- .+-.- .+.||+.||.+ .+|+||+|-+.+++. T Consensus 344 ~~~~R~~W~~~~ff~~qp~~~~-GV~tD~~lrp~~~g~~~~NLya~GsvL~G~d 396 (419) T TIGR03378 344 QLPDRDQWYQHRFFAPHPFMQF-GVKTDAQLRPSRGGQTIENLYAIGAVLGGYD 396 (419) T ss_pred CCCCHHHCCCCCCCCCCHHHHC-CCEECCCCCCCCCCCCCCCEEEECHHHCCCC T ss_conf 9887566023035688801332-8678877783567834565067231231887 No 84 >PRK08275 putative oxidoreductase; Provisional Probab=99.36 E-value=1.3e-11 Score=103.13 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=32.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC Q ss_conf 933199998986689999999987--993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~ 36 (466) +++||+|||||.||+.||+.|++. |.+|+||+|... T Consensus 8 i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~ 45 (554) T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554) T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 87288999971999999999998689897999979998 No 85 >PRK07804 L-aspartate oxidase; Provisional Probab=99.36 E-value=1.4e-11 Score=102.91 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 319999898668999999998799399993799715025 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) -||+|||+|.||+.||+.|++.|.+|+|+||.+..+|.+ T Consensus 16 tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~g~s 54 (533) T PRK07804 16 ADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTATAT 54 (533) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH T ss_conf 688999964999999999986799889997889999707 No 86 >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.35 E-value=7.7e-12 Score=104.68 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=34.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 31999989866899999999879939999379971502 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |||+|||+|.||++||+++++.|.+|+||+|....+|. T Consensus 8 ~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~~~s~ 45 (588) T PRK08958 8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 79899995499999999998749938999788989986 No 87 >KOG3851 consensus Probab=99.33 E-value=3.5e-13 Score=114.48 Aligned_cols=299 Identities=20% Similarity=0.299 Sum_probs=146.2 Q ss_pred CCCEEEECCCHHHHHHHHHHH-HCCC-CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 331999989866899999999-8799-39999379971502513667370989999999999998667558164775328 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAA-QLKN-KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~-~~G~-~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) +|.|+|+|||.+|++.|.+.. ++|. +|.+||..+. +....||...... T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~----------------------------HyYQPgfTLvGgG-- 88 (446) T KOG3851 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED----------------------------HYYQPGFTLVGGG-- 88 (446) T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHH----------------------------CCCCCCEEEECCC-- T ss_conf 3489998678630578999986568985577552153----------------------------2457651786430-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCC Q ss_conf 9999999999999877777876400431011001110022210235752112322100004676652--44457665321 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA--SGLPGMSIDFD 157 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p--~~iP~~~~~~~ 157 (466) +..+-..+....+-...+.. +++ .+|..++ -+.|+|. +.+ .++|+||++|||+|-.- -.|+|+...++ T Consensus 89 l~~l~~srr~~a~liP~~a~-wi~-ekv~~f~-----P~~N~v~--t~g-g~eIsYdylviA~Giql~y~~IkGl~Eal~ 158 (446) T KOG3851 89 LKSLDSSRRKQASLIPKGAT-WIK-EKVKEFN-----PDKNTVV--TRG-GEEISYDYLVIAMGIQLDYGKIKGLVEALD 158 (446) T ss_pred HHHHHHCCCCCCCCCCCCCH-HHH-HHHHHCC-----CCCCEEE--CCC-CCEEEEEEEEEEEECEECCCHHCCHHHHCC T ss_conf 44465536741111567758-999-8887508-----7767477--059-967766567665402444020037576625 Q ss_pred CEEEEEEC----------CCCCCC------CCCCC-CCCCCCCCCCCCCC-HHHHHCCCC--HHHHHHCCCCCCC-C-CC Q ss_conf 00245305----------741111------11333-21012344543320-132201220--1110000111221-2-22 Q gi|254781053|r 158 EQVIVSST----------GALSFS------SVPKN-LLVIGAGVIGLELG-SVWTRLGSC--VKIIEHSGTILNG-M-DK 215 (466) Q Consensus 158 ~~~~~t~~----------~~~~l~------~~P~~-ivIIGgG~ig~E~A-~~~~~lG~~--Vtli~~~~~ll~~-~-d~ 215 (466) ...+.+.- .+++++ ..|.. +-.-|+-.-.+=++ ++|++.|.+ +.++.... |+. | =+ T Consensus 159 tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk 236 (446) T KOG3851 159 TPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVK 236 (446) T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC--CCCEECHH T ss_conf 9983554686789999999972357865783499864117885331123599998727555652798517--65010378 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCC Q ss_conf 21122222222222223220023442014687216999721332110000023204531210367840000126764223 Q gi|254781053|r 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI 295 (466) Q Consensus 216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I 295 (466) ..++.+++..+++.|++.+.....++...+....-...+..|..++++++++-+.--.. +.. -|.+..+ .|+.|++ T Consensus 237 ~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms--~pe-~l~~s~~-adktGfv 312 (446) T KOG3851 237 HYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMS--TPE-VLANSDL-ADKTGFV 312 (446) T ss_pred HHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCC--CHH-HHHCCCC-CCCCCCE T ss_conf 89999999987545376301235898536414388754799851477560364169988--725-5413756-5755646 Q ss_pred CCCC-CCEE-ECCCCEEECCCCCCCCCCCE--ECCCCCCEEECC----CCCCCCCCCCC Q ss_conf 3377-6333-02684870243335434430--001232012011----12222222333 Q gi|254781053|r 296 EIGG-QFQT-SISTIYAIGDVVRGPMLAHK--AEDEGIAVAEII----SGQKGHVNYGI 346 (466) Q Consensus 296 ~vd~-~~~T-s~p~IyA~GDv~g~~~l~~~--A~~~g~~aa~~i----~~~~~~~~~~~ 346 (466) -||. .+|. ..||||++|||.+.|.--.. ...|.-++-+|+ .|+...+.|+. T Consensus 313 dVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydG 371 (446) T KOG3851 313 DVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDG 371 (446) T ss_pred ECCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECC T ss_conf 54732320256887024123468995266788874274435659999647986400167 No 88 >PRK08401 L-aspartate oxidase; Provisional Probab=99.33 E-value=3.1e-12 Score=107.59 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=33.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 331999989866899999999879939999379971502 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |.||+|||+|.||++||+++++.|.+|+|+++.+.-+.+ T Consensus 1 mtdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~~~~s 39 (464) T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSKDSNS 39 (464) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH T ss_conf 987999897699999999999749969999589999514 No 89 >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.33 E-value=1.4e-11 Score=102.86 Aligned_cols=34 Identities=41% Similarity=0.580 Sum_probs=30.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |..||+|||+|.||+.||++|++.| +|+|+++.. T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~ 39 (539) T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGL 39 (539) T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCC T ss_conf 9649899995399999999998259-979997789 No 90 >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.32 E-value=1.8e-11 Score=102.07 Aligned_cols=41 Identities=34% Similarity=0.530 Sum_probs=35.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEE Q ss_conf 9331999989866899999999879--9399993799715025 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTC 41 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC 41 (466) |.|||+|||+|.||++||+++++.| .+|+|+||....+|.| T Consensus 2 ~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s 44 (575) T PRK05945 2 LEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHS 44 (575) T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH T ss_conf 4089899996599999999999878998299997889999726 No 91 >PRK09077 L-aspartate oxidase; Provisional Probab=99.31 E-value=1.8e-11 Score=101.92 Aligned_cols=45 Identities=33% Similarity=0.517 Sum_probs=36.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE-EEECCC Q ss_conf 3319999898668999999998799399993799715025-136673 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC-LNIGCI 47 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC-~~~GCi 47 (466) +|||+|||+|.||+.||+++++. .+|+|++|.+..+|.+ ...|.| T Consensus 8 ~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi 53 (535) T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGI 53 (535) T ss_pred CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCE T ss_conf 28989999539999999974038-98899978899997278870853 No 92 >PRK07395 L-aspartate oxidase; Provisional Probab=99.31 E-value=1.3e-11 Score=102.99 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=32.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3319999898668999999998799399993799715025 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) +|||+|||+|.||++||+.+++ +.+|+||+|.+..+|.+ T Consensus 10 ~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s 48 (556) T PRK07395 10 QFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSAS 48 (556) T ss_pred CCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHH T ss_conf 5978999963999999997235-99889998999999626 No 93 >COG2081 Predicted flavoproteins [General function prediction only] Probab=99.31 E-value=1.4e-12 Score=110.13 Aligned_cols=137 Identities=28% Similarity=0.464 Sum_probs=74.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------EEE--EEECCCCHHHH---------HHHH-HHH- Q ss_conf 93319999898668999999998799399993799715--------025--13667370989---------9999-999- Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--------GTC--LNIGCIPSKAL---------LHAS-EMY- 59 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--------GtC--~~~GCiPsK~l---------~~~a-~~~- 59 (466) |+|||+|||||||||.||..++++|.+|+|||+.+.+| |-| -|. |.|.-.+ ++++ ..+ T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~-~~~~~~ls~~p~~~~fl~sal~~ft 80 (408) T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNS-EAPDEFLSRNPGNGHFLKSALARFT 80 (408) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHCC T ss_conf 742189988878899999988646987999805864221368537887433265-0589999758982067788987279 Q ss_pred -HHHHHHHHHCCEECCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCC-CCCCCCCCCCCC Q ss_conf -99998667558164775328999999---99999998777778764004310110011--100222-102357521123 Q gi|254781053|r 60 -SHIAKEAGDLGINIASCHLDLKKMMS---YKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNN-KILVKGSSSEET 132 (466) Q Consensus 60 -~~~~~~~~~~g~~~~~~~~d~~~~~~---~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~-~v~V~~~~~~~~ 132 (466) .++..-+..+|+...... ..+++- .-..+++. ....+++.+|++..... .+...+ ...+...++. + T Consensus 81 ~~d~i~~~e~~Gi~~~e~~--~Gr~Fp~sdkA~~Iv~~----ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~-~ 153 (408) T COG2081 81 PEDFIDWVEGLGIALKEED--LGRMFPDSDKASPIVDA----LLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE-T 153 (408) T ss_pred HHHHHHHHHHCCCEEEECC--CCEECCCCCCHHHHHHH----HHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCC-E T ss_conf 8999999986597157746--85255786666899999----999999759589814647767633855899859998-8 Q ss_pred CCCEEECCCCCCC Q ss_conf 2210000467665 Q gi|254781053|r 133 IEAKNIVIATGSE 145 (466) Q Consensus 133 i~ad~iviATGs~ 145 (466) +++|++|||||.. T Consensus 154 i~~d~lilAtGG~ 166 (408) T COG2081 154 VKCDSLILATGGK 166 (408) T ss_pred EECCEEEEECCCC T ss_conf 9804899922886 No 94 >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.30 E-value=2e-11 Score=101.68 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=34.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 93319999898668999999998799399993799715 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G 38 (466) |+|||+|||||.||++||+++++.|.+|+||+|....+ T Consensus 4 ~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~ 41 (566) T PRK06452 4 LSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTR 41 (566) T ss_pred EECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 87078999974999999999987799789997889999 No 95 >PRK06175 L-aspartate oxidase; Provisional Probab=99.30 E-value=2e-11 Score=101.74 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=33.6 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 93--31999989866899999999879939999379971502 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |+ .||+|||+|.||++||+.|+ .|.+|+||+|.+..||. T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~n 41 (433) T PRK06175 1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECN 41 (433) T ss_pred CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCC T ss_conf 986487899995699999999617-89988999788999976 No 96 >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.30 E-value=2.7e-11 Score=100.72 Aligned_cols=41 Identities=34% Similarity=0.575 Sum_probs=34.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEE Q ss_conf 933199998986689999999987---99399993799715025 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTC 41 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC 41 (466) ++|||+|||+|.||++||+.|++. |.+|+|+||....+|.+ T Consensus 4 ~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s 47 (582) T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHS 47 (582) T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH T ss_conf 87068999973999999999998538998699997989999708 No 97 >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.28 E-value=2.1e-11 Score=101.55 Aligned_cols=38 Identities=37% Similarity=0.447 Sum_probs=34.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33199998986689999999987993999937997150 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) +|||+|||+|.||++||+++++.|.+|+||+|....+| T Consensus 8 e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~~ 45 (631) T PRK07803 8 EYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKA 45 (631) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 05989999649999999999876998799978999986 No 98 >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed Probab=99.28 E-value=8.9e-12 Score=104.22 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=38.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||||||+|.||++||++|++.|++|+||||.+.+||+... T Consensus 7 ~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~ 47 (552) T PRK12844 7 VDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAM 47 (552) T ss_pred ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 09799896789999999999889968999889996664798 No 99 >PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional Probab=99.28 E-value=1.1e-11 Score=103.64 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=36.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3319999898668999999998799399993799715025 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) .|||+|||+|.||++||++|++.|.+|+||||....||.+ T Consensus 34 ~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS 73 (622) T PTZ00139 34 TYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHT 73 (622) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH T ss_conf 6587999966999999999997699089997889999748 No 100 >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.27 E-value=5.8e-11 Score=98.32 Aligned_cols=38 Identities=34% Similarity=0.405 Sum_probs=34.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33199998986689999999987993999937997150 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) .|||+|||+|.||++||++|++.|.+|+||+|....+| T Consensus 12 e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~~~s 49 (598) T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFPTRS 49 (598) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 37989999569999999999874990799978899998 No 101 >PRK07512 L-aspartate oxidase; Provisional Probab=99.27 E-value=4.7e-11 Score=98.94 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=29.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 33199998986689999999987993999937997 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) -+||+|||+|.||++||+++++. +|+||++.+. T Consensus 9 ~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~ 41 (507) T PRK07512 9 TGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPL 41 (507) T ss_pred CCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCC T ss_conf 69989999669999999983307--8399990588 No 102 >PRK09231 fumarate reductase flavoprotein subunit; Validated Probab=99.26 E-value=1.5e-11 Score=102.52 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=35.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEE Q ss_conf 933199998986689999999987--99399993799715025 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTC 41 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC 41 (466) |.+||+|||+|.||++||+++++. |.+|+|++|....+|.| T Consensus 3 ~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s 45 (582) T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582) T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC T ss_conf 3556899996699999999999868998599997899899861 No 103 >pfam03486 HI0933_like HI0933-like protein. Probab=99.25 E-value=2.2e-10 Score=94.07 Aligned_cols=136 Identities=27% Similarity=0.407 Sum_probs=77.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------EEEEEECCCCHHHHHH----HHHHHH---------H Q ss_conf 319999898668999999998799399993799715--------0251366737098999----999999---------9 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--------GTCLNIGCIPSKALLH----ASEMYS---------H 61 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--------GtC~~~GCiPsK~l~~----~a~~~~---------~ 61 (466) |||+||||||||+.||++|++.|++|+|+|+.+.+| |-|=-.=|.+.+.++. ..+.+. + T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d 80 (405) T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD 80 (405) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH T ss_conf 97999996699999999998689959999589987501588268961407899979998625775799999998489999 Q ss_pred HHHHHHHCCEECCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC-CCCCCCCCCCCCCC Q ss_conf 998667558164775---32899999999999998777778764004310110011--100-222-10235752112322 Q gi|254781053|r 62 IAKEAGDLGINIASC---HLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN-KILVKGSSSEETIE 134 (466) Q Consensus 62 ~~~~~~~~g~~~~~~---~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~-~v~V~~~~~~~~i~ 134 (466) ...-+...|+..... ++ ++.- ..-..+++.+ ...+++.+|++..+.. .+. +.. ...+.. ..+++. T Consensus 81 ~~~ff~~~Gl~~~~e~~Grv-fP~s-~~A~~Vl~~L----~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~--~~~~~~ 152 (405) T pfam03486 81 FIAWFEELGVPLKEEDHGRL-FPVS-DKASDIVDAL----LNELKELGVKIRTRTRVLSVEKDDDGRFRVDT--GGEELE 152 (405) T ss_pred HHHHHHHCCCEEEECCCCEE-ECCC-CCHHHHHHHH----HHHHHHCCCEEEECCEEEEEEECCCCEEEEEE--CCCEEE T ss_conf 99999977990597789979-7898-9869999999----99999779789958887899975994599994--895897 Q ss_pred CEEECCCCCCCC Q ss_conf 100004676652 Q gi|254781053|r 135 AKNIVIATGSEA 146 (466) Q Consensus 135 ad~iviATGs~p 146 (466) +|++|||||+.. T Consensus 153 a~~vIlAtGG~s 164 (405) T pfam03486 153 ADSLVLATGGLS 164 (405) T ss_pred ECEEEEECCCCC T ss_conf 278999048866 No 104 >PRK08626 fumarate reductase flavoprotein subunit; Provisional Probab=99.25 E-value=1.1e-10 Score=96.38 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=34.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 3199998986689999999987993999937997150 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) |||+|||+|.||++||+++++.|.+|+|++|.+..++ T Consensus 6 tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~~s 42 (657) T PRK08626 6 TDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPAKRS 42 (657) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 1689999659999999999975995799968889998 No 105 >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.24 E-value=2.9e-11 Score=100.45 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=34.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 933199998986689999999987993999937997150 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ++|||+|||+|.||++||++|++.|.+|+|++|....+| T Consensus 11 ~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~~s 49 (591) T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 477889999669999999999876995899978899997 No 106 >PRK06134 putative FAD-binding dehydrogenase; Reviewed Probab=99.22 E-value=5.2e-11 Score=98.67 Aligned_cols=42 Identities=43% Similarity=0.602 Sum_probs=38.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 331999989866899999999879939999379971502513 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) -|||||||+|.||++||+++++.|++|+||||.+.+||+... T Consensus 10 e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 51 (579) T PRK06134 10 ECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAW 51 (579) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 718699896789999999999879948999799988736777 No 107 >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Probab=99.21 E-value=3.5e-10 Score=92.62 Aligned_cols=35 Identities=40% Similarity=0.618 Sum_probs=32.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) +-+||+|||||.||..||+++++.+.+|+|+||.. T Consensus 12 ~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ 46 (894) T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAH 46 (894) T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCC T ss_conf 37787998897268899999760699589985456 No 108 >PRK12842 putative succinate dehydrogenase; Reviewed Probab=99.20 E-value=7.1e-11 Score=97.67 Aligned_cols=43 Identities=42% Similarity=0.656 Sum_probs=39.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 9331999989866899999999879939999379971502513 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |-|||||||+|.||++||++|++.|++|+||||.+.+||+... T Consensus 4 ie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 46 (567) T PRK12842 4 LSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAF 46 (567) T ss_pred CEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 3059699896889999999999879908999779988856798 No 109 >PTZ00188 adrenodoxin reductase; Provisional Probab=99.20 E-value=2.3e-10 Score=93.96 Aligned_cols=261 Identities=16% Similarity=0.242 Sum_probs=128.5 Q ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 319999898668999999998-7993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) |=|.|||+||||+.||-.|.+ -+.+|-|+|+-+..=| .-.||+-..-++ . T Consensus 40 lRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfG--------------------------LVRyGVAPDHpe--v- 90 (506) T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG--------------------------LIRYGVAPDHIH--V- 90 (506) T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC--------------------------CCCCCCCCCCHH--H- T ss_conf 57999888838999999996389977988826898874--------------------------111046889856--6- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC--CCEEECCCCCCCCC------------ Q ss_conf 9999999999987777787640043101100111002221023575211232--21000046766524------------ Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI--EAKNIVIATGSEAS------------ 147 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i--~ad~iviATGs~p~------------ 147 (466) +++ ...++..+...++.++ .+ |.|-.+-+-+++ .||.+|+|+|+.-. T Consensus 91 ------Knv----~~~f~~~a~~p~~rF~-------GN--V~vG~Ditl~eL~~~YdAVVlA~GAs~~~~~~~~~~~~~~ 151 (506) T PTZ00188 91 ------KNT----YRTFDLVFSSPNYRFF-------GN--VHVGVDLKMEELRRHYNCVIFCCGASEVSIPIGQQDEDKA 151 (506) T ss_pred ------HHH----HHHHHHHHCCCCEEEE-------EC--EEECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC T ss_conf ------068----9999999658975999-------47--3348988999998638999994797855556776520025 Q ss_pred CCCCCCCCCCCEEEEEECCCCCC-------------C----C--CCCCCCCCCCCCCCCCCCHHHHH------------- Q ss_conf 44576653210024530574111-------------1----1--13332101234454332013220------------- Q gi|254781053|r 148 GLPGMSIDFDEQVIVSSTGALSF-------------S----S--VPKNLLVIGAGVIGLELGSVWTR------------- 195 (466) Q Consensus 148 ~iP~~~~~~~~~~~~t~~~~~~l-------------~----~--~P~~ivIIGgG~ig~E~A~~~~~------------- 195 (466) .+|+...+.....++++.++-.| + . ..++++|||.|.+|+..|-+|.+ T Consensus 152 ~~~ge~lp~~~~Gv~sA~eFV~WYNGhp~d~~~~~~~~~l~~~~~~~~avVIGnGNVALDVARILl~~~deL~~TDI~~~ 231 (506) T PTZ00188 152 VSGGETNPRKQNGLFHARDLIYFYNNMYNDVRCRAVENYLKSFENFTTCIIIGNGNVSLDIARILVKSPNHLSKTDISSD 231 (506) T ss_pred CCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHCCCCCHHH T ss_conf 88622145545772847771102039996312343322233324575479978873588878773589778435787199 Q ss_pred ----C-C---CCHHHHHHCCCC--------------CCCC----CC-------------CCCC-------CCCCCC---C Q ss_conf ----1-2---201110000111--------------2212----22-------------2112-------222222---2 Q gi|254781053|r 196 ----L-G---SCVKIIEHSGTI--------------LNGM----DK-------------EIAA-------HCLKIM---S 226 (466) Q Consensus 196 ----l-G---~~Vtli~~~~~l--------------l~~~----d~-------------~~~~-------~~~~~l---~ 226 (466) | . .+|+|+-|+.-+ |+.. |+ ...+ .+++.+ + T Consensus 232 AL~~L~~S~Vk~V~ivGRRGp~qaaFT~kELREL~~L~~~~vvv~p~d~dl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 311 (506) T PTZ00188 232 YLKVMKQHKIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEANTNMKKRQHEIFQKMVKNYE 311 (506) T ss_pred HHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHH T ss_conf 99999868984799984358776066879999874689953885756514333333300102367789999999874055 Q ss_pred ---C--------CCCCCCCCHHHHHHHCCCCCCE-EEEEEE---------CCCCCCCEEEEEEECCCCEEEECCCCCEEE Q ss_conf ---2--------2222322002344201468721-699972---------133211000002320453121036784000 Q gi|254781053|r 227 ---K--------QGMNFQLNSKVSSVKKVKGKAQ-VVYRST---------DDEPINIEADAVLVAAGRRPYTKGLGLEEI 285 (466) Q Consensus 227 ---~--------~gV~i~~~~~v~~i~~~~~~~~-v~~~~~---------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~ 285 (466) + .-+.+++...+.++...++... +.+... .++.++++++.|+-++|.+.. . +. T Consensus 312 ~~~~~~~~~~~~~~~~~~f~~~p~~i~~~~g~v~~~~l~~n~~~~~~~~~~~e~e~i~~~LVirSIGYrg~--~--~~-- 385 (506) T PTZ00188 312 EVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNRNVPMSFSSFKENKVLVTPLVIFATGFKKS--N--FA-- 385 (506) T ss_pred HCCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEEECCCCCCC--C--CC-- T ss_conf 40358554566305899843786125157994568997734654677777551389877989979376889--9--89-- Q ss_pred ECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC Q ss_conf 012676422333776333026848702433354 Q gi|254781053|r 286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP 318 (466) Q Consensus 286 gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~ 318 (466) +...++.+....|+..+ ..+++|++|=+-.+| T Consensus 386 ~~~~~~~~~~~~~~~g~-~~~glY~aGWiKRGP 417 (506) T PTZ00188 386 ENLYNQSVQMFREDIGQ-HKFAIFKAGWFDKGP 417 (506) T ss_pred CCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCC T ss_conf 88888777766788888-678728657456388 No 110 >PRK12843 putative FAD-binding dehydrogenase; Reviewed Probab=99.19 E-value=1.6e-10 Score=95.01 Aligned_cols=41 Identities=41% Similarity=0.547 Sum_probs=38.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||||||+|.||++||+++++.|++|+||||...+||+... T Consensus 15 ~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 55 (576) T PRK12843 15 TDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTAT 55 (576) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH T ss_conf 28699896889999999999889948999797999815666 No 111 >KOG1800 consensus Probab=99.18 E-value=1.3e-10 Score=95.88 Aligned_cols=276 Identities=19% Similarity=0.318 Sum_probs=138.8 Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH Q ss_conf 199998986689999999987--993999937997150251366737098999999999999866755816477532899 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK 81 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~ 81 (466) -|.|||+||||+.+|-.+-+. +.+|.|+|+.+..+|. +.+|--| ..+.+ T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAP-------------------------DHpEv--- 72 (468) T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAP-------------------------DHPEV--- 72 (468) T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCE-EEECCCC-------------------------CCCCH--- T ss_conf 599988883688999999725899706754157766533-6633478-------------------------98210--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCC-CC--CCCCCCCCC Q ss_conf 999999999998777778764004310110011100222102357521123--2210000467665-24--445766532 Q gi|254781053|r 82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEET--IEAKNIVIATGSE-AS--GLPGMSIDF 156 (466) Q Consensus 82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~--i~ad~iviATGs~-p~--~iP~~~~~~ 156 (466) +.++..+.+- ++.. .-+|..+- .|-.+-.-++ =.||.+|||.||. ++ .|||.+. T Consensus 73 ------KnvintFt~~----aE~~-------rfsf~gNv--~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l-- 131 (468) T KOG1800 73 ------KNVINTFTKT----AEHE-------RFSFFGNV--KVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEEL-- 131 (468) T ss_pred ------HHHHHHHHHH----HHCC-------CEEEEECC--EECCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCC-- T ss_conf ------1478888887----5135-------44898030--1046310899862166799971588874068987434-- Q ss_pred CCEEEEEECCCCCC------------CCCCCCCCCCCCCCCCCCCCHHHHH---------------CC-------CCHHH Q ss_conf 10024530574111------------1113332101234454332013220---------------12-------20111 Q gi|254781053|r 157 DEQVIVSSTGALSF------------SSVPKNLLVIGAGVIGLELGSVWTR---------------LG-------SCVKI 202 (466) Q Consensus 157 ~~~~~~t~~~~~~l------------~~~P~~ivIIGgG~ig~E~A~~~~~---------------lG-------~~Vtl 202 (466) ..+++.+.+-.| +--.++++|||.|.+++..|-+|-. +. .+|+| T Consensus 132 --~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~l 209 (468) T KOG1800 132 --SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKL 209 (468) T ss_pred --CCCEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE T ss_conf --561226665411058873122575655543799746820122245550786320023678578875530377534899 Q ss_pred HHHCCCC--------------CCCC----CC-CCC-------------------CCCCCCCCC---------CC---CCC Q ss_conf 0000111--------------2212----22-211-------------------222222222---------22---223 Q gi|254781053|r 203 IEHSGTI--------------LNGM----DK-EIA-------------------AHCLKIMSK---------QG---MNF 232 (466) Q Consensus 203 i~~~~~l--------------l~~~----d~-~~~-------------------~~~~~~l~~---------~g---V~i 232 (466) +-|++-+ |+.. |+ +++ +.+.+.+.+ .+ -.+ T Consensus 210 vgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~ 289 (468) T KOG1800 210 VGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHL 289 (468) T ss_pred EECCCCCCEEEEHHHHHHHHCCCCCCCCCCCHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 84157420002489899986788865445722015503775446544740678999999988643203643676414578 Q ss_pred CCCHHHHHHHCCCCC-CEEEEE----E-----ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE Q ss_conf 220023442014687-216999----7-----213321100000232045312103678400001267642233377633 Q gi|254781053|r 233 QLNSKVSSVKKVKGK-AQVVYR----S-----TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQ 302 (466) Q Consensus 233 ~~~~~v~~i~~~~~~-~~v~~~----~-----~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~ 302 (466) .+.-.+.+|....++ ..+.+. . ..+..++++|+.++.++|.+-.. +. .||.+|.+..|.-|.+.+ T Consensus 290 ~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p----v~-~gipFd~~kgvv~n~~Gr 364 (468) T KOG1800 290 RFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVP----VD-SGIPFDDKKGVVPNVNGR 364 (468) T ss_pred HHHCCHHHHCCCCCCCCCEEEEEEEEHHHCCCCCCCEEEECCCEEEEEEEECCCC----CC-CCCCCCCCCCCCCCCCCE T ss_conf 8752988763686653541787543101014566752762132367630000244----68-998966444746687856 Q ss_pred EE----CCCCEEECCCCCCCC-CCCEECCCCCCEEECCC Q ss_conf 30----268487024333543-44300012320120111 Q gi|254781053|r 303 TS----ISTIYAIGDVVRGPM-LAHKAEDEGIAVAEIIS 336 (466) Q Consensus 303 Ts----~p~IyA~GDv~g~~~-l~~~A~~~g~~aa~~i~ 336 (466) .. .|++|++|=|-.+|. .--.+++++..+++.|. T Consensus 365 V~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468) T KOG1800 365 VLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468) T ss_pred EEEECCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHH T ss_conf 885214774478742224886344002566899999999 No 112 >PRK11259 solA N-methyltryptophan oxidase; Provisional Probab=99.16 E-value=2e-10 Score=94.44 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=34.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 933199998986689999999987993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |+|||+|||||..|+++|.+|+++|++|+|+|+... T Consensus 2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~ 37 (377) T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMP 37 (377) T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 504899999529999999999978995999928998 No 113 >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=99.15 E-value=3.7e-10 Score=92.47 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=32.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33199998986689999999987993999937997150 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) +|||+|||+|.||++||+++++ +.+|+||+|....++ T Consensus 5 ~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~~s 41 (583) T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRS 41 (583) T ss_pred CCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCC T ss_conf 1788999962999999997156-997799978899997 No 114 >PRK11728 hypothetical protein; Provisional Probab=99.14 E-value=4.5e-11 Score=99.09 Aligned_cols=196 Identities=18% Similarity=0.286 Sum_probs=98.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 933199998986689999999987--993999937997150251366737098999999999999866755816477532 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |||||+|||||..|++.|.+|+++ +.+|+|+||++.+|-- -|+ +++..++ -|+.....+ T Consensus 1 m~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~-------~S~---rNSgviH--------aG~~y~p~s- 61 (400) T PRK11728 1 MMYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARH-------QTG---HNSGVIH--------AGVYYTPGS- 61 (400) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-------CCC---CCHHHCC--------CCCCCCCCC- T ss_conf 953099999679999999999955999839999689997563-------353---2423215--------643589999- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCC-----C Q ss_conf 89999999999999877777876400431011001110022210235752112322100004676652-44457-----6 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA-SGLPG-----M 152 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p-~~iP~-----~ 152 (466) ++.- +..+-.+.+....+..++.+- +..++++|+.-.. ..+.. . T Consensus 62 -lka~------l~~~g~~l~~~~~~~~~i~~~-----------------------~~GkliVA~~~~e~~~L~~l~~~~~ 111 (400) T PRK11728 62 -LKAR------FCRRGNEATKAFCDQHGIPYE-----------------------VCGKLLVATSELELERMEALYERAA 111 (400) T ss_pred -HHHH------HHHHHHHHHHHHHHHCCCCCC-----------------------CCCEEEEECCHHHHHHHHHHHHHHH T ss_conf -9999------999999999999998599921-----------------------1686999779999999999999998 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCC Q ss_conf 653210024530574111111333210123445433201322012201110000111221222-2112222222222222 Q gi|254781053|r 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDK-EIAAHCLKIMSKQGMN 231 (466) Q Consensus 153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~-~~~~~~~~~l~~~gV~ 231 (466) .... ....++.+++.+++ |. +.-+|+ .|. ...-+ .|+ ++.+.+.+.++++|++ T Consensus 112 ~ngv-~~~~l~~~ei~~~e--P~-v~~~~a---------l~~----------p~tgi---vD~~~l~~al~~~a~~~G~~ 165 (400) T PRK11728 112 ANGI-EVERLDAEELRERE--PN-IRGLGA---------IFV----------PSTGI---VDYRAVAEAMAELIQARGGE 165 (400) T ss_pred HCCC-CEEEECHHHHHHHC--CC-CCCCCE---------EEC----------CCCEE---ECHHHHHHHHHHHHHHCCCE T ss_conf 5698-62896799999868--86-543235---------976----------87727---78999999999999978989 Q ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEE Q ss_conf 32200234420146872169997213321100000232045312 Q gi|254781053|r 232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRP 275 (466) Q Consensus 232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P 275 (466) ++++++|++++..+++..+.. .++ .++.++.|+.|.|--. T Consensus 166 i~~~~~V~~i~~~~~~~~v~t--~~~--~~i~a~~vINaAGl~A 205 (400) T PRK11728 166 IRLGAEVTALDEHANGVVVRT--SQG--GEFEARTLVNCAGLMS 205 (400) T ss_pred EEECCEEEEEEEECCEEEEEE--CCC--CEEEEEEEEECCCHHH T ss_conf 992788989999799999998--899--8899718998666528 No 115 >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] Probab=99.11 E-value=1.5e-09 Score=88.01 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=87.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCC-EEE------EEECCCCHHHHHHH-HH----HHHHHHHHH Q ss_conf 331999989866899999999879---9399993799715-025------13667370989999-99----999999866 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYG-GTC------LNIGCIPSKALLHA-SE----MYSHIAKEA 66 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~G-GtC------~~~GCiPsK~l~~~-a~----~~~~~~~~~ 66 (466) +|+|+|||+|+.|+..|..|.+.- .++.|+|+.+.+| |.. .|.=-||++-|--. .. ..+.+.... T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474) T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 95189978865799999999847887775678535554578755788882144216202354458998168999997425 Q ss_pred HHCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---EEEEEEEEEECCC---CC-CCCCCCCCCCCCCCEEEC Q ss_conf 7558164775328999999999999987777787640043---1011001110022---21-023575211232210000 Q gi|254781053|r 67 GDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNK---IITYHGSARIVSN---NK-ILVKGSSSEETIEAKNIV 139 (466) Q Consensus 67 ~~~g~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~---V~~~~g~a~~~~~---~~-v~V~~~~~~~~i~ad~iv 139 (466) ..+... .....| .+...-+.-+-+.+.+.+..+++... |..++..+.=+.. .. ..+...+ .....+|-+| T Consensus 81 ~~~~d~-~~~~~d-~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~-g~~~~ad~~V 157 (474) T COG4529 81 QRYRDP-EDINHD-GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD-GPSEIADIIV 157 (474) T ss_pred CCCCCH-HHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEECCC-CCEEEEEEEE T ss_conf 565775-443776-5346615699999999999999736764046776444301004577357896588-8704501799 Q ss_pred CCCCCCCCCCCCCCCCCC-CEEEE-EECCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHCCC--CHHHHHHCC Q ss_conf 467665244457665321-00245-30574111111--3332101234454332013220122--011100001 Q gi|254781053|r 140 IATGSEASGLPGMSIDFD-EQVIV-SSTGALSFSSV--PKNLLVIGAGVIGLELGSVWTRLGS--CVKIIEHSG 207 (466) Q Consensus 140 iATGs~p~~iP~~~~~~~-~~~~~-t~~~~~~l~~~--P~~ivIIGgG~ig~E~A~~~~~lG~--~Vtli~~~~ 207 (466) +|||-.++..+.....+. ...++ +....-.+..+ -.+++|+|+|..-++.--.+++-|- ++|++.|+. T Consensus 158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474) T COG4529 158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474) T ss_pred EECCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 94368899742122113788643316558851013467783689637720577999875027756558984256 No 116 >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Probab=99.10 E-value=3.1e-10 Score=93.01 Aligned_cols=40 Identities=40% Similarity=0.615 Sum_probs=37.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 9331999989866899999999879939999379971502 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |+|||+||||||||.+||..|++.|.+|+++|+.+..|.- T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396) T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396) T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 4788999897889999999998579929999657889998 No 117 >PRK06854 adenylylsulfate reductase; Validated Probab=99.10 E-value=1.3e-09 Score=88.44 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=31.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCC Q ss_conf 3319999898668999999998--7993999937997 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQ--LKNKVAIIEKEKT 36 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~--~G~~V~lIE~~~~ 36 (466) .+||+|||+|.||+.||++|++ .|++|+||+|... T Consensus 11 ~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~ 47 (610) T PRK06854 11 DTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANI 47 (610) T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 7699999976999999999987789997999989999 No 118 >PRK06481 fumarate reductase flavoprotein subunit; Validated Probab=99.10 E-value=3.7e-10 Score=92.48 Aligned_cols=41 Identities=37% Similarity=0.589 Sum_probs=38.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE Q ss_conf 33199998986689999999987993999937997150251 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL 42 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~ 42 (466) .|||||||+|.||++||+++++.|.+|+||||.+..||+.. T Consensus 60 ~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~ 100 (506) T PRK06481 60 KYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTM 100 (506) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH T ss_conf 84679989889999999999988997899968999995188 No 119 >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed Probab=99.08 E-value=9.6e-10 Score=89.43 Aligned_cols=42 Identities=40% Similarity=0.657 Sum_probs=38.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 319999898668999999998799399993799715025136 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI 44 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~ 44 (466) |||||||+|.||++||++|++.|++|+||||.+.+||+.... T Consensus 6 ~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s 47 (560) T PRK07843 6 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 47 (560) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH T ss_conf 578998967899999999998899889996999977077772 No 120 >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=99.07 E-value=6.3e-11 Score=98.07 Aligned_cols=192 Identities=20% Similarity=0.310 Sum_probs=116.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHC Q ss_conf 3332101234454332013220122011100001112-------21--2222-112222222222222322002344201 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKE-IAAHCLKIMSKQGMNFQLNSKVSSVKK 243 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~-~~~~~~~~l~~~gV~i~~~~~v~~i~~ 243 (466) .++|+|||+|+-||=.|+.|++.|-.||++||.||+- |. +|+. +.+.=.+.|+++||+|++|++|=..+. T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWde 230 (517) T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWDE 230 (517) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 86689975675799999998535883899743678886302488874337388999999998747842017830046534 Q ss_pred CCCCCEEEEEEECCCCCCCEEEEEEECCCCE-EE---ECCCCCEEEECCC-----CCCCCCCCCCCC-EE-ECCC----- Q ss_conf 4687216999721332110000023204531-21---0367840000126-----764223337763-33-0268----- Q gi|254781053|r 244 VKGKAQVVYRSTDDEPINIEADAVLVAAGRR-PY---TKGLGLEEIGINI-----DHRGCIEIGGQF-QT-SIST----- 307 (466) Q Consensus 244 ~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~-Pn---~~~l~Le~~gi~~-----~~~G~I~vd~~~-~T-s~p~----- 307 (466) ...-..+.-.+-.-++..-.+|.|++|+|-. |. +++-.|+ ||.. ..+.....|+.+ .- ..|- T Consensus 231 nskitnlsk~di~~~~L~~~fDAVVLa~Ga~~pRDLpI~GREL~--GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akG 308 (517) T TIGR01317 231 NSKITNLSKKDISADELKEDFDAVVLATGATKPRDLPIPGRELK--GIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKG 308 (517) T ss_pred CCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC T ss_conf 44200022342687998714693898337886010355776646--6037865546754856088536667887354228 Q ss_pred --CEEEC------CCCCCCCCCCEECCCCCCEEECCCCCCCCCC--CCCCCCCEEEHHHHHHHHHCHHHHHH-CCCCEE Q ss_conf --48702------4333543443000123201201112222222--33332210001445510014788862-346658 Q gi|254781053|r 308 --IYAIG------DVVRGPMLAHKAEDEGIAVAEIISGQKGHVN--YGIIPSVVYTHPEVASIGKTEEQLKC-EKKSYK 375 (466) Q Consensus 308 --IyA~G------Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~--~~~ip~~vft~peia~vGlte~~a~~-~~~~~~ 375 (466) |=.+| ||.| ++.+||-...+++---|.+.. -...||=- -|.+-++=-..+|+++ .|.|.. T Consensus 309 K~VvvIGGGDTG~DCvG------Ts~RhGA~sV~qFE~mP~PP~~Ra~~npWP~--wP~v~r~~y~hEE~~a~~GrDpR 379 (517) T TIGR01317 309 KKVVVIGGGDTGADCVG------TSLRHGAASVHQFEIMPKPPEERAKDNPWPE--WPKVYRVDYAHEEVKAKYGRDPR 379 (517) T ss_pred CEEEEECCCCCCCHHHH------HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC--CCCEEEECHHHHHHHHCCCCCCH T ss_conf 67899757875622456------3235543552302568887767727864865--75113302668989851795601 No 121 >PRK12409 D-amino acid dehydrogenase small subunit; Provisional Probab=99.04 E-value=2.1e-09 Score=87.02 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=52.6 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC---CCC Q ss_conf 112222222222222322002344201468721699972-1332110000023204531210367840000126---764 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI---DHR 292 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~---~~~ 292 (466) +.+.+.+.+++.|++|+.+++|++++..++++.+....+ .++..++.+|.|++|+|.-. ..| ++.+|+.+ ..+ T Consensus 199 ~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS--~~L-~~~lG~~~Pl~p~r 275 (410) T PRK12409 199 FTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGS--RQL-AAMLGDRVNVYPVK 275 (410) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCC--HHH-HHHCCCCCCEEECC T ss_conf 999999999977999987855899998099899996464233552588304998766663--766-86538865236426 Q ss_pred CCCC Q ss_conf 2233 Q gi|254781053|r 293 GCIE 296 (466) Q Consensus 293 G~I~ 296 (466) |+.. T Consensus 276 Gy~l 279 (410) T PRK12409 276 GYSI 279 (410) T ss_pred CEEE T ss_conf 7589 No 122 >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed Probab=99.03 E-value=2.9e-09 Score=85.99 Aligned_cols=41 Identities=34% Similarity=0.514 Sum_probs=38.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) +||||||+|.||++||+.|++.|++|+||||.+.+||+... T Consensus 12 ~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 52 (584) T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL 52 (584) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH T ss_conf 38799896789999999999889958999699998717787 No 123 >TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity. Probab=98.99 E-value=3.4e-09 Score=85.48 Aligned_cols=37 Identities=41% Similarity=0.622 Sum_probs=36.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCEE Q ss_conf 1999989866899999999879-939999379971502 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGT 40 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~GGt 40 (466) ||||||+|.||++||+.|.+.| .+|+|+||.+.+||. T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGN 38 (487) T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGN 38 (487) T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH T ss_conf 96898427688999999986468763787057523226 No 124 >PRK07121 hypothetical protein; Validated Probab=98.98 E-value=2e-09 Score=87.12 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=38.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||||||+|.||++||++|++.|++|+||||.+.+||+... T Consensus 21 ~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 61 (491) T PRK07121 21 ADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATAL 61 (491) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH T ss_conf 69899896799999999999889928999548999950888 No 125 >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed Probab=98.98 E-value=1.2e-09 Score=88.66 Aligned_cols=40 Identities=40% Similarity=0.578 Sum_probs=37.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||||||+| ||++||+++++.|++|+||||.+.+||+... T Consensus 17 ~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~~ 56 (566) T PRK12845 17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (566) T ss_pred ECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 497998846-9999999999889938999689999857787 No 126 >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional Probab=98.95 E-value=2.4e-09 Score=86.55 Aligned_cols=41 Identities=39% Similarity=0.515 Sum_probs=37.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 319999898668999999998799399993799715025136 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI 44 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~ 44 (466) |||||||+| ||++||+.+++.|++|+|+||.+.+||+.... T Consensus 10 ~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~s 50 (515) T PRK12837 10 VDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYS 50 (515) T ss_pred CCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHC T ss_conf 397998906-99999999998799889997889888188745 No 127 >PRK10015 hypothetical protein; Provisional Probab=98.93 E-value=2.6e-10 Score=93.54 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=70.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH--------CCEEC Q ss_conf 3319999898668999999998799399993799715025136673709899999999999986675--------58164 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGD--------LGINI 73 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~--------~g~~~ 73 (466) +||||||||||||++||.+|++.|++|+||||.+..|.-.+--|.+..++|- +++-.....++. +.+-. T Consensus 5 ~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgvl~~~~le---~liP~~~~~aP~er~V~~~~~~~l~ 81 (429) T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLE---AIIPGFAASAPVERKVTREKISFLT 81 (429) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECHHHHH---HHCCCCCCCCCCCEEEEEEEEEEEC T ss_conf 1588999968899999999987799199996788799855126374162788---8688964479852158987899987 Q ss_pred C--CCCCCHHHH---HHHHHHH---HHHHHHHHHHHHHCCCEEEEEEEEE---ECCCCCCC-CCCCCCCCCCCCEEECCC Q ss_conf 7--753289999---9999999---9987777787640043101100111---00222102-357521123221000046 Q gi|254781053|r 74 A--SCHLDLKKM---MSYKKSI---VESNTQGINFLLKKNKIITYHGSAR---IVSNNKIL-VKGSSSEETIEAKNIVIA 141 (466) Q Consensus 74 ~--~~~~d~~~~---~~~~~~~---v~~~~~~~~~~~~~~~V~~~~g~a~---~~~~~~v~-V~~~~~~~~i~ad~iviA 141 (466) . ...+++... +...... ...+..-+....++.|++++.|... +.+..+|. |.+ ++..++++.+|+| T Consensus 82 ~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~t--g~~~l~A~vVI~A 159 (429) T PRK10015 82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA--GDDILEANVVILA 159 (429) T ss_pred CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEC--CCCEEEEEEEEEE T ss_conf 89806667656786766778659899999999999999759999779589999962998999987--9826886589981 Q ss_pred CCCCC Q ss_conf 76652 Q gi|254781053|r 142 TGSEA 146 (466) Q Consensus 142 TGs~p 146 (466) -|.+. T Consensus 160 dGvns 164 (429) T PRK10015 160 DGVNS 164 (429) T ss_pred CCCCH T ss_conf 56227 No 128 >pfam01134 GIDA Glucose inhibited division protein A. Probab=98.91 E-value=8.6e-09 Score=82.51 Aligned_cols=132 Identities=27% Similarity=0.406 Sum_probs=72.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------HHHHHHCCEEC-- Q ss_conf 1999989866899999999879939999-3799715025136673709899999999999-------98667558164-- Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLNIGCIPSKALLHASEMYSHI-------AKEAGDLGINI-- 73 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lI-E~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~-------~~~~~~~g~~~-- 73 (466) ||+|||||+||..||+.++++|.+|+|| .+.+ +|-.-.|-||.--+...++.+++ .+.+...++.+ T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~----~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~ 76 (391) T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTD----TIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRM 76 (391) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC----CCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 979999878999999999868996899973424----3158865655687530439999987258999999997545653 Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCCCC Q ss_conf ----775328999999999999987777787640-043101100111-0-0222102-357521123221000046766 Q gi|254781053|r 74 ----ASCHLDLKKMMSYKKSIVESNTQGINFLLK-KNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIATGS 144 (466) Q Consensus 74 ----~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~-~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviATGs 144 (466) ..+.+.-.+....++.+ ...+...++ ..+++++++... + .+++++. |...++ +.+.++.+|||||. T Consensus 77 LN~skGpAv~a~R~q~Dr~~y----~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g-~~i~a~~vIltTGT 150 (391) T pfam01134 77 LNTSKGPAVRALRAQVDRDLY----SKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDG-EEYKAKAVVIATGT 150 (391) T ss_pred HCCCCCCCCCCCHHHHHHHHH----HHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCC-CEEECCEEEEECCC T ss_conf 044678766685899879999----999999997599939995464003026995999993799-78514459993156 No 129 >TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm. Probab=98.86 E-value=4.2e-09 Score=84.78 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=32.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9331999989866899999999879939999379 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) |+.||+|||+|.|||++|+.+.+.+.+|+||-|. T Consensus 1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~ 34 (546) T TIGR00551 1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKA 34 (546) T ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 9635999752089999998533268637897587 No 130 >PRK00711 D-amino acid dehydrogenase small subunit; Validated Probab=98.86 E-value=1.9e-08 Score=79.96 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=38.5 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 12222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ...+.+.+++.|++++.+++|++++..++++..+.+ ++ ..+.+|.|++|+|- T Consensus 204 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~V~t--~~--g~i~ad~vV~AaGa 255 (416) T PRK00711 204 TQRLAALAEQLGVKFRFNTPVDGLLVEGGRITGVQT--GG--GVITADAYVVALGS 255 (416) T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEC--CC--CEEEEEEEEEECCH T ss_conf 999999998538862002315899984998998853--89--55750169993374 No 131 >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated Probab=98.85 E-value=4.1e-08 Score=77.54 Aligned_cols=135 Identities=26% Similarity=0.462 Sum_probs=69.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCH-----H-HHHHHHHHHH-HHHHHHHHCCEE Q ss_conf 93319999898668999999998799399993799-71502513667370-----9-8999999999-999866755816 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPS-----K-ALLHASEMYS-HIAKEAGDLGIN 72 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPs-----K-~l~~~a~~~~-~~~~~~~~~g~~ 72 (466) ++|||+|||||.||..||..+++.|.+++||--.. .+| . --|-|| | .|++--..+. .+.+.+..-++. T Consensus 5 ~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig-~---msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq 80 (621) T PRK05192 5 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG-Q---MSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQ 80 (621) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE-E---EECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 879889989757999999999967996799965813115-8---604520367216576668775368999999887616 Q ss_pred C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCC Q ss_conf 4------77532899999999999998777778764-0043101100111-0-0222102-3575211232210000467 Q gi|254781053|r 73 I------ASCHLDLKKMMSYKKSIVESNTQGINFLL-KKNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIAT 142 (466) Q Consensus 73 ~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviAT 142 (466) + ..+.+--.+.+..++.. ...+...+ ...+++++++... + +++++|. |....+ ..+.++.+||+| T Consensus 81 ~r~LN~sKGpAv~~~RaQ~Dr~~Y----~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g-~~i~a~~vvltt 155 (621) T PRK05192 81 FRMLNTSKGPAVRAPRAQADRKLY----RAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDG-LEFRAKAVVLTT 155 (621) T ss_pred HHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCC-EEEEEEEEEEEC T ss_conf 876158888300673988859999----999999996499978998145799987999999996687-099852699831 Q ss_pred CC Q ss_conf 66 Q gi|254781053|r 143 GS 144 (466) Q Consensus 143 Gs 144 (466) |. T Consensus 156 GT 157 (621) T PRK05192 156 GT 157 (621) T ss_pred CC T ss_conf 56 No 132 >pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Probab=98.85 E-value=5e-08 Score=76.92 Aligned_cols=40 Identities=45% Similarity=0.683 Sum_probs=37.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 1999989866899999999879939999379971502513 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) ||||||+|.||++||++|++.|++|+||||.+.+||++.. T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~ 40 (401) T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAW 40 (401) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH T ss_conf 9899988699999999999789948999789999976888 No 133 >PRK11445 putative oxidoreductase; Provisional Probab=98.84 E-value=1.5e-08 Score=80.79 Aligned_cols=48 Identities=42% Similarity=0.551 Sum_probs=37.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE-----EEEECCCCHHHH Q ss_conf 331999989866899999999879939999379971502-----513667370989 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT-----CLNIGCIPSKAL 52 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt-----C~~~GCiPsK~l 52 (466) +||||||||||||-+||..|++. .+|+|||+....+.. |- |++|.+++ T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCG--G~I~~~a~ 53 (348) T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCG--GLLAPDAQ 53 (348) T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC--CCCCHHHH T ss_conf 99799989788999999998268-9889998135656799988786--87197289 No 134 >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] Probab=98.81 E-value=9e-09 Score=82.35 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) ||+|||+|.||+++|+.|++. .+|+|+-|.+. T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518) T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518) T ss_pred CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCC T ss_conf 589988759999999737777-84799957778 No 135 >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Probab=98.80 E-value=2.8e-07 Score=71.50 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=33.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 31999989866899999999879939999379971 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) |||+|||||..|+++|.+|+++|++|++||++..- T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~ 35 (365) T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365) T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 92999993299999999999789949999899999 No 136 >COG0579 Predicted dehydrogenase [General function prediction only] Probab=98.79 E-value=3.8e-09 Score=85.05 Aligned_cols=226 Identities=23% Similarity=0.268 Sum_probs=109.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC Q ss_conf 9331999989866899999999879--93999937997150251366737098999999999999866755816477532 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL 78 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 78 (466) |+|||+|||||.-|.+.|.+|++++ ++|+|+||...+| |--|+ +++.+++. |+..... T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-------~~sS~---~NSgviHa--------g~~y~p~-- 61 (429) T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-------QESSS---NNSGVIHA--------GLYYTPG-- 61 (429) T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CCCCC---CCCCCEEC--------CCCCCCC-- T ss_conf 8322999897389899999999738896599997057653-------33456---76534425--------5448985-- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCC-----C Q ss_conf 89999999999999877777876400431011001110022210235752112322100004676652-44457-----6 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA-SGLPG-----M 152 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p-~~iP~-----~ 152 (466) +++.-+.. . . ......+.+..++.+ ....++++|+|-.- ..++. . T Consensus 62 slka~l~~--~-g---~~~~~~~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~ 112 (429) T COG0579 62 SLKAKLCV--A-G---NINEFAICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGK 112 (429) T ss_pred CHHHHHHH--H-H---HHHHHHHHHHHCCCC-----------------------CCCCEEEEEECHHHHHHHHHHHHHHH T ss_conf 51339999--9-9---999999999849861-----------------------23680899978277899999999886 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65321002453057411111133321--0123445433201322012201110000111221222211222222222222 Q gi|254781053|r 153 SIDFDEQVIVSSTGALSFSSVPKNLL--VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGM 230 (466) Q Consensus 153 ~~~~~~~~~~t~~~~~~l~~~P~~iv--IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV 230 (466) .........++-+++.+++ |. +. ++|+ .+.. .-+++... ++...+.+.+.++|+ T Consensus 113 ~ngv~~~~~ld~~~i~~~e--P~-l~~~~~aa---------l~~p---~~giV~~~---------~~t~~l~e~a~~~g~ 168 (429) T COG0579 113 ANGVFDLEILDKEEIKELE--PL-LNEGAVAA---------LLVP---SGGIVDPG---------ELTRALAEEAQANGV 168 (429) T ss_pred HCCCCCEEECCHHHHHHHC--CC-CCCCCEEE---------EECC---CCCEECHH---------HHHHHHHHHHHHCCC T ss_conf 5798614426999998629--65-44365146---------8757---77507689---------999999999997697 Q ss_pred CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEE Q ss_conf 23220023442014687216999721332110000023204531210367840000126764223337763330 Q gi|254781053|r 231 NFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTS 304 (466) Q Consensus 231 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts 304 (466) ++++|++|+.++..++++.+.. ..+|+.. ++++.|+.+.|--.. .| +..+|+..+-.+++.--+|+... T Consensus 169 ~i~ln~eV~~i~~~~dg~~~~~-~~~g~~~-~~ak~Vin~AGl~Ad--~l-a~~~g~~~~~~~~P~~G~y~~~~ 237 (429) T COG0579 169 ELRLNTEVTGIEKQSDGVFVLN-TSNGEET-LEAKFVINAAGLYAD--PL-AQMAGIPEDFKIFPVRGEYLVLD 237 (429) T ss_pred EEEECCEEEEEEEECCCEEEEE-ECCCCEE-EEEEEEEECCCHHHH--HH-HHHHCCCCCCCCCCCCEEEEEEC T ss_conf 8993483647899279659998-3479678-995689989745179--99-99728986445275010799976 No 137 >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. Probab=98.79 E-value=2.6e-07 Score=71.73 Aligned_cols=48 Identities=33% Similarity=0.454 Sum_probs=38.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC-CCEEEEEECCCCH Q ss_conf 33199998986689999999987--993999937997-1502513667370 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT-YGGTCLNIGCIPS 49 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~-~GGtC~~~GCiPs 49 (466) ..||+|||||..|+++|.+|+++ |.+|+|+|++.. .|.+--|-||+.+ T Consensus 24 ~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGRNgG~~~~ 74 (460) T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT 74 (460) T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC T ss_conf 551999994399999999999748999889994896156556654451567 No 138 >PRK06184 hypothetical protein; Provisional Probab=98.77 E-value=8.9e-09 Score=82.39 Aligned_cols=139 Identities=20% Similarity=0.213 Sum_probs=69.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC---C-EEC Q ss_conf 3319999898668999999998799399993799715----0251366737098999999999999866755---8-164 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----GTCLNIGCIPSKALLHASEMYSHIAKEAGDL---G-INI 73 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~---g-~~~ 73 (466) .+||+||||||+|+++|+.|+++|.+|+|||+.+..- ..+++.. |--+++...+...+......+ . +.. T Consensus 6 tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~r---t~eil~~lGl~d~i~~~~~~~~~~~~~~~ 82 (503) T PRK06184 6 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPR---TQEVFDDLGVLDRVVAAGGLYPPMRIYRD 82 (503) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCCEEEEEC T ss_conf 579899990999999999999779989999489998868858987899---99999987897899843576752499968 Q ss_pred CCC------------CCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCC Q ss_conf 775------------328--99999999999998777778764004310110011--100-222--10235752112322 Q gi|254781053|r 74 ASC------------HLD--LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN--KILVKGSSSEETIE 134 (466) Q Consensus 74 ~~~------------~~d--~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~ 134 (466) ... ..+ +...+-.-+.. +...+...+...++++..|.. .|. ++. ++.+...++.++++ T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~---le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~ 159 (503) T PRK06184 83 DGSVVESDMMHHLKPTPDEPYHLPLMVPQWR---TEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEETVR 159 (503) T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEECHHH---HHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEE T ss_conf 9705651024334666676535257722799---9999999998679869947668899981998999998599718999 Q ss_pred CEEECCCCCCCC Q ss_conf 100004676652 Q gi|254781053|r 135 AKNIVIATGSEA 146 (466) Q Consensus 135 ad~iviATGs~p 146 (466) ++++|=|=|++. T Consensus 160 a~ylVGaDGa~S 171 (503) T PRK06184 160 ARYLVGADGGRS 171 (503) T ss_pred EEEEECCCCCCH T ss_conf 877741577774 No 139 >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Probab=98.76 E-value=1e-07 Score=74.62 Aligned_cols=34 Identities=35% Similarity=0.483 Sum_probs=32.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |||+||||||+|+++|+.|+++|.+|.|||+.+. T Consensus 13 ~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~ 46 (554) T PRK06183 13 TDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPT 46 (554) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 8889999598999999999977999999918999 No 140 >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] Probab=98.76 E-value=5.4e-08 Score=76.68 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=63.7 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCC------------CCEE Q ss_conf 1122222222222223220023442014687216999721332110000023204531210367------------8400 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGL------------GLEE 284 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l------------~Le~ 284 (466) +.+.+...++..|.-...+.+|.+.+-..+.+...++. +.....+.+|..++|+|.-= +++| +|+- T Consensus 260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr-n~~diP~~a~~~VLAsGsff-skGLvae~d~I~EPIf~ldi 337 (421) T COG3075 260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR-NHADIPLRADFYVLASGSFF-SKGLVAERDKIYEPIFDLDI 337 (421) T ss_pred HHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEEEC-CCCCCCCCHHHEEEECCCCC-CCCCHHHHHHHHCCHHHCCC T ss_conf 89999999997286672587213246427868898703-45657777457266136511-25302002323040021111 Q ss_pred EEC----CCCCC----------CCCCCCCCCEEE-----CCCCEEECCCCCCCC Q ss_conf 001----26764----------223337763330-----268487024333543 Q gi|254781053|r 285 IGI----NIDHR----------GCIEIGGQFQTS-----ISTIYAIGDVVRGPM 319 (466) Q Consensus 285 ~gi----~~~~~----------G~I~vd~~~~Ts-----~p~IyA~GDv~g~~~ 319 (466) ... +.... =.+.+|+++|-+ ..|.||+|-|.|++. T Consensus 338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~AiGavlgGfd 391 (421) T COG3075 338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFD 391 (421) T ss_pred CCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 268505542010235887267728112555371311067888999877751876 No 141 >PRK08274 tricarballylate dehydrogenase; Validated Probab=98.76 E-value=4.7e-08 Score=77.17 Aligned_cols=40 Identities=33% Similarity=0.481 Sum_probs=35.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEE Q ss_conf 319999898668999999998799399993799--7150251 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCL 42 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~ 42 (466) .||||||+|.||++||+.+++.|++|+||||.+ ..||+.. T Consensus 5 VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~ 46 (456) T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR 46 (456) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHH T ss_conf 888999988999999999998799099998327778880305 No 142 >pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Probab=98.74 E-value=3.8e-07 Score=70.54 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=39.9 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 112222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +...+.+.+++.|++++.+++|++++..+++..| ...++ ++.+|.|++|+|- T Consensus 149 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v--~t~~g---~i~a~~VV~a~G~ 200 (309) T pfam01266 149 LLRALARAAEALGVEILEGTEVTGLEREGGGVTV--ETADG---EIRADKVVNAAGA 200 (309) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEE--EECCC---EECCCEEEECCCH T ss_conf 3679999998779699917689999998999999--98997---0858999997774 No 143 >PRK12839 hypothetical protein; Provisional Probab=98.72 E-value=1.7e-08 Score=80.38 Aligned_cols=43 Identities=44% Similarity=0.646 Sum_probs=39.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC Q ss_conf 3199998986689999999987993999937997150251366 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G 45 (466) |||||||+|.||++||+++++.|++|+||||.+.+||+....| T Consensus 10 ~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~sg 52 (574) T PRK12839 10 YDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWSG 52 (574) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC T ss_conf 5789989689999999999988992899968999984355627 No 144 >PRK10157 putative oxidoreductase FixC; Provisional Probab=98.71 E-value=2.4e-08 Score=79.25 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=35.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33199998986689999999987993999937997150 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) +||||||||||||.+||.+|++.|++|+|+||++..|. T Consensus 5 ~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~ 42 (428) T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 57789999688999999999878990999967888998 No 145 >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Probab=98.69 E-value=2.9e-08 Score=78.71 Aligned_cols=56 Identities=29% Similarity=0.344 Sum_probs=43.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 22112222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ..+.+.+.+.+++.|++|+++++|++|...+++ .+++...++ ..+++|.|+..... T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~-g~~~~~~~g--~~~~ad~vv~~~~~ 279 (487) T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGK-GVGVRTSDG--ENIEADAVVSNADP 279 (487) T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCC-EEEEEECCC--CEEECCEEEECCCH T ss_conf 999999999999749399678713599971890-589980676--07514689986887 No 146 >PRK08244 hypothetical protein; Provisional Probab=98.69 E-value=5.1e-08 Score=76.87 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=72.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEECC- Q ss_conf 93319999898668999999998799399993799715----0251366737098999999999999866755-81647- Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----GTCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINIA- 74 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~~- 74 (466) |++||+|||+||+|+++|+.|+++|.+|+|||+.+..- ..+++. .|-.+++...+...+.+..... ++... T Consensus 1 m~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~---rt~eil~~~Gl~~~l~~~g~~~~~~~~~~ 77 (494) T PRK08244 1 MKTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHP---RTLELLEMRGLLERFLEKGRKLPSGHFAG 77 (494) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCH---HHHHHHHHCCCHHHHHHHCEECCCCEEEC T ss_conf 998999999478999999999977999999908999888998746089---99999998789889885210765636814 Q ss_pred -CCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCCCEEECCC Q ss_conf -75328999999-------99999998777778764004310110011--100-222--102357521123221000046 Q gi|254781053|r 75 -SCHLDLKKMMS-------YKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN--KILVKGSSSEETIEAKNIVIA 141 (466) Q Consensus 75 -~~~~d~~~~~~-------~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~ad~iviA 141 (466) ...+++..+-. .-+... ..-+...++..++++..++- .|. +.. ++.+...++.++++++++|=| T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~Q~~l---e~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylVGa 154 (494) T PRK08244 78 LDTRLDFSALDTRANYTLFLPQAET---EKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAVGA 154 (494) T ss_pred CCCCEECCCCCCCCCCEEEECHHHH---HHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEEEE T ss_conf 4330320335778882698155999---9999999984798899686899999869978999990897689987799982 Q ss_pred CCCCC Q ss_conf 76652 Q gi|254781053|r 142 TGSEA 146 (466) Q Consensus 142 TGs~p 146 (466) =|++. T Consensus 155 DGa~S 159 (494) T PRK08244 155 DGAGS 159 (494) T ss_pred CCCCC T ss_conf 46672 No 147 >PRK08774 consensus Probab=98.69 E-value=1.5e-07 Score=73.55 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=33.0 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93--319999898668999999998799399993799 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+ |||+||||||+|+++|+.|++.|.+|+|||+.+ T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~ 37 (402) T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATP 37 (402) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 9899878999916999999999966899789993799 No 148 >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=98.69 E-value=9.9e-08 Score=74.78 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=41.1 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCC Q ss_conf 222232200234420146872169997213321100000232045312103678400001267 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINID 290 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~ 290 (466) .+|+++.++++++++..++++.+++... +++.++.++.++-|-|....+. +.+|++.. T Consensus 134 ~~v~~~~~~~v~~~~~~~~~v~v~l~~~-~~~~~i~a~llIgaDG~~S~VR----~~lgi~~~ 191 (413) T PRK07364 134 PNITWLCPAQVLSVEYGEHQATVTLEIA-GQLQTLQSKLVVAADGARSPIR----QAAGIKTD 191 (413) T ss_pred CCCEEEECCEEEEEEECCCEEEEEEECC-CCEEEEEEEEEEEECCCCCHHH----HHHCCCCC T ss_conf 9948982877999997698369999829-9138998568999318885003----54068765 No 149 >PRK12834 putative FAD-binding dehydrogenase; Reviewed Probab=98.67 E-value=2.5e-08 Score=79.10 Aligned_cols=44 Identities=34% Similarity=0.513 Sum_probs=39.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEEE Q ss_conf 93319999898668999999998799399993799--715025136 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLNI 44 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~~ 44 (466) |-|||||||+|.||++||++|++.|+||+|+||++ .+||++... T Consensus 1 ~e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s 46 (549) T PRK12834 1 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS 46 (549) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH T ss_conf 9999899896789999999999879927999668888988467761 No 150 >PRK07608 hypothetical protein; Provisional Probab=98.65 E-value=4e-08 Score=77.61 Aligned_cols=36 Identities=44% Similarity=0.627 Sum_probs=34.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 933199998986689999999987993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |+|||+||||||+|+++|+.|++.|.+|+|||+.+. T Consensus 4 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~ 39 (389) T PRK07608 4 MKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPP 39 (389) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999889999068999999999837998899958998 No 151 >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=98.64 E-value=1.6e-07 Score=73.33 Aligned_cols=35 Identities=46% Similarity=0.698 Sum_probs=33.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 31999989866899999999879939999379971 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) |||+||||||+|+++|+.|++.|.+|+|||+.+.. T Consensus 6 ~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~ 40 (386) T PRK07494 6 TDIAVSGGGPAGLAAAIALASAGASVALVAPAPPY 40 (386) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 86899990689999999998789988999579988 No 152 >PRK06185 hypothetical protein; Provisional Probab=98.63 E-value=2.3e-07 Score=72.10 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=32.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .||+||||||||+++|+.|++.|.+|+++|+.+. T Consensus 7 tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~ 40 (409) T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (409) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 9989999188999999999977999999918999 No 153 >PRK06126 hypothetical protein; Provisional Probab=98.60 E-value=9.4e-08 Score=74.94 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=32.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .||+||||||+|+++|+.|+++|.+|+|||+.+. T Consensus 8 ~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~ 41 (545) T PRK06126 8 TPVLIVGGGPVGLALALELGRRGVDSILVERGDG 41 (545) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 9989999498999999999987999999889999 No 154 >TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process. Probab=98.60 E-value=8.9e-08 Score=75.11 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=76.4 Q ss_pred CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC------ Q ss_conf 1999989866899999999--87993999937997-15025136673709899999999999986675581647------ Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAA--QLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA------ 74 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~--~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~------ 74 (466) |++||||||||+.-|.+++ +.|++|.+||..+. .+|+- |||.=-+ -|-...+ ......-..-|+.. T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~-tyg~w~~-dl~~~~h---awl~~l~~~~W~~~~~y~~~ 75 (419) T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNN-TYGVWDD-DLSDLGH---AWLADLVEHRWSDAYEYRFP 75 (419) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCC-CHHHHHH---HHHHHHHCCCCCCEEEECCC T ss_conf 97887477578999999997505871898678887677687-4421222-2327899---99998841638980688387 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEE-ECCC-CCCC-CCCCCCCCCCCCEEECCCCCCCC Q ss_conf 7532899999999999998777778764004-3101100111-0022-2102-35752112322100004676652 Q gi|254781053|r 75 SCHLDLKKMMSYKKSIVESNTQGINFLLKKN-KIITYHGSAR-IVSN-NKIL-VKGSSSEETIEAKNIVIATGSEA 146 (466) Q Consensus 75 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~-~V~~~~g~a~-~~~~-~~v~-V~~~~~~~~i~ad~iviATGs~p 146 (466) +...++..--...+ ..++.+.+...+... |+.++.+++- +... .... |.. ++.++|+++-||-|+|.+| T Consensus 76 ~~~~~L~~~Y~~~~--~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~-~~g~~i~Ar~V~Da~G~~~ 148 (419) T TIGR01790 76 EEPIKLGRAYGSVD--RAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVEC-AGGQRIQARLVIDARGFKP 148 (419) T ss_pred CCCHHCCCCCEEEC--HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEC-CCCEEEEEEEEEECCCCCC T ss_conf 34301056650001--5899999998620037613301356666544055111442-8973784007883257776 No 155 >pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes. Probab=98.57 E-value=6.2e-07 Score=69.00 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=45.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222322002344201468721699972-13321100000232045312103 Q gi|254781053|r 220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+.+.+++.+++++++.++++++.+++++.+.+.+. +++..++++|.|+-|-|....+. T Consensus 106 ~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgADG~~S~vR 165 (349) T pfam01494 106 ILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVR 165 (349) T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHH T ss_conf 999999857998996617877520599437999845899558999768841577764899 No 156 >PRK08163 salicylate hydroxylase; Provisional Probab=98.57 E-value=6.1e-07 Score=69.05 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=32.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 31999989866899999999879939999379971 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) .+|+||||||||+++|+.|++.|.+|+|+|+.+.+ T Consensus 5 ~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~ 39 (396) T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 84999897889999999999789999999179988 No 157 >PRK08132 hypothetical protein; Provisional Probab=98.56 E-value=1.2e-07 Score=74.24 Aligned_cols=35 Identities=40% Similarity=0.549 Sum_probs=32.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 33199998986689999999987993999937997 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) +.||+|||+||+|+++|+.|+++|.+++|||+.+. T Consensus 23 ~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~ 57 (549) T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (549) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 69999999257999999999987999999959999 No 158 >TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.. Probab=98.56 E-value=7.2e-08 Score=75.77 Aligned_cols=34 Identities=44% Similarity=0.687 Sum_probs=32.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |||||||+||||-+||.+|++.|.+|+|+|+.+. T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~ 34 (343) T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSF 34 (343) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHH T ss_conf 9389982774689999999956973889850450 No 159 >PRK09126 hypothetical protein; Provisional Probab=98.52 E-value=1.4e-07 Score=73.58 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.9 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222232200234420146872169997213321100000232045312103 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..+|++++++++++++..++++.+++.+ + .++.+|.|+-|-|....+. T Consensus 123 ~~~v~~~~~~~v~~~~~~~~~v~v~~~~--g--~~i~a~llVgADG~~S~vR 170 (392) T PRK09126 123 QPGIEILTGHRVKAVTHSDDGAQVTLAN--G--RRLTARLLVAADSRFSATR 170 (392) T ss_pred CCCCEEECCCEEEEEEECCCEEEEEECC--C--CEEEEEEEEEECCCCCHHH T ss_conf 8996998698889999759805999858--9--8888779998068886111 No 160 >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process. Probab=98.52 E-value=1.3e-07 Score=73.98 Aligned_cols=47 Identities=32% Similarity=0.503 Sum_probs=42.5 Q ss_pred CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEECCCCCCEEEEEECCCC Q ss_conf 331999989866899999-99987993999937997150251366737 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAI-KAAQLKNKVAIIEKEKTYGGTCLNIGCIP 48 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~-~~~~~G~~V~lIE~~~~~GGtC~~~GCiP 48 (466) |||.+|||||-+|.-+|- .|+++|+||+||||...+||.|=-.=|-- T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~ 48 (390) T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDEN 48 (390) T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC T ss_conf 951799866367799999999970998899973066587344422488 No 161 >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Probab=98.52 E-value=2.1e-07 Score=72.37 Aligned_cols=44 Identities=39% Similarity=0.607 Sum_probs=38.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC Q ss_conf 31999989866899999999879939999379971502513667 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC 46 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC 46 (466) -||+|+|+||+|++||.+|++.|+||+++|+.-.+||=|..-|- T Consensus 26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGGm 69 (257) T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGGM 69 (257) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHH T ss_conf 68899888827999999998689659999713468886313000 No 162 >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=98.51 E-value=1.7e-07 Score=73.04 Aligned_cols=35 Identities=51% Similarity=0.648 Sum_probs=32.8 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93-319999898668999999998799399993799 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+ |||+||||||+|+.+|+.|++.|.+|+|||+.+ T Consensus 1 M~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~ 36 (384) T PRK08849 1 MNKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFE 36 (384) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 981899999924999999999995799599996899 No 163 >PRK07208 hypothetical protein; Provisional Probab=98.51 E-value=2.2e-07 Score=72.29 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=38.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE Q ss_conf 33199998986689999999987993999937997150251 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL 42 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~ 42 (466) |=+|+||||||+|++||.+|++.|++|+|+|+++.+||.|- T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vGGl~~ 43 (474) T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEVGGISR 43 (474) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE T ss_conf 87599989768999999999868997599978998754477 No 164 >PRK07588 hypothetical protein; Provisional Probab=98.50 E-value=1.5e-07 Score=73.44 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=39.6 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 22222222222322002344201468721699972133211000002320453121036 Q gi|254781053|r 221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) +.+.++ .+++++++.++++++..++++.+++.++ + +.++|.|+-|-|....+.. T Consensus 109 L~~~~~-~~v~v~~g~~v~~i~~~~dgV~v~f~dG--~--~~~~DlvVGADGi~S~vR~ 162 (391) T PRK07588 109 IYTTIE-GQVETIFDDSIATIDEHRDGVRLTLERG--T--PRDFDLVIGADGLHSHVRR 162 (391) T ss_pred HHHHCC-CCCEEEECCEEEEEEECCCEEEEEECCC--C--EEEEEEEEECCCCCCHHHH T ss_conf 997514-4878997999999996299589998799--8--8887599954876407778 No 165 >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] Probab=98.48 E-value=4.6e-07 Score=69.95 Aligned_cols=130 Identities=25% Similarity=0.409 Sum_probs=64.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC----------CCCCEEEEEECCCCHHH-HHHHHHHH-HHHHHHHHHCC Q ss_conf 31999989866899999999879939999379----------97150251366737098-99999999-99998667558 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE----------KTYGGTCLNIGCIPSKA-LLHASEMY-SHIAKEAGDLG 70 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----------~~~GGtC~~~GCiPsK~-l~~~a~~~-~~~~~~~~~~g 70 (466) |||+|||||.||..||+.++++|.+++|+--+ +.+|| |-|- +.+--..+ ..+.+.....+ T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG--------~~KG~lvrEIDALGG~Mg~~~D~~~ 76 (621) T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGG--------PGKGHLVREIDALGGLMGKAADKAG 76 (621) T ss_pred CCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCC--------CCCCEEEEEEHHCCCHHHHHHHHCC T ss_conf 85699899842047777664369807999737774465035644577--------3553267752412455777666507 Q ss_pred EEC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--ECCCCC-CC-CCCCCCCCCCCCEEECC Q ss_conf 164------775328999999999999987777787640043101100111--002221-02-35752112322100004 Q gi|254781053|r 71 INI------ASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSAR--IVSNNK-IL-VKGSSSEETIEAKNIVI 140 (466) Q Consensus 71 ~~~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~--~~~~~~-v~-V~~~~~~~~i~ad~ivi 140 (466) +.+ ..|.+.-.+....+....+.... .+....+++++++.+. ++.+.. +. |.+..+ ..|.++.+|| T Consensus 77 IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~---~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G-~~~~a~aVVl 152 (621) T COG0445 77 IQFRMLNSSKGPAVRAPRAQADKWLYRRAMKN---ELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG-PEFHAKAVVL 152 (621) T ss_pred CCHHHCCCCCCCHHCCHHHHHHHHHHHHHHHH---HHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCC-CEEECCEEEE T ss_conf 86533367776210450654428999999999---9854999552476667871337976899992787-8510687999 Q ss_pred CCCC Q ss_conf 6766 Q gi|254781053|r 141 ATGS 144 (466) Q Consensus 141 ATGs 144 (466) +||. T Consensus 153 TTGT 156 (621) T COG0445 153 TTGT 156 (621) T ss_pred EECC T ss_conf 6334 No 166 >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=98.48 E-value=1.3e-06 Score=66.60 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.4 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+++.+|+++.++++.+++..++++.+++. ++ .+++++.|+-|-|....+. T Consensus 115 ~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~--~g--~~i~a~llIgaDG~~S~VR 170 (403) T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLA--DG--STLEARLLVAADGARSKLR 170 (403) T ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCHHHH T ss_conf 99999998289989858857899974980799978--99--8999869998348761325 No 167 >PRK08013 hypothetical protein; Provisional Probab=98.47 E-value=2.3e-07 Score=72.10 Aligned_cols=35 Identities=40% Similarity=0.516 Sum_probs=33.2 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93-319999898668999999998799399993799 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+ |||+||||||+|+++|+.|++.|.+|++||+.. T Consensus 1 M~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~ 36 (400) T PRK08013 1 MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRV 36 (400) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 996788999935999999999971899589991899 No 168 >pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Probab=98.47 E-value=1.9e-07 Score=72.64 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=37.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC Q ss_conf 3199998986689999999987993999937997150251366 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G 45 (466) -||+|+||||+|++||.+|++.|+||++||+.-.+||=|..-| T Consensus 18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGG 60 (229) T pfam01946 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGG 60 (229) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC T ss_conf 6889988781799999999878985999964526888620201 No 169 >PRK07233 hypothetical protein; Provisional Probab=98.39 E-value=5.2e-07 Score=69.56 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=42.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 22112222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ..+.+.+.+.|++.|.+|++|++|++|...++++.++.. +| .++.+|.|++|+-. T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~~--~g--~~~~ad~VI~a~p~ 251 (430) T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVET--DG--EEEAFDAVISTIPP 251 (430) T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEEE--CC--CEEECCEEEECCCH T ss_conf 999999999999759999979978899995998999997--99--49993999989998 No 170 >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=98.37 E-value=5.2e-07 Score=69.53 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=33.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |++||+||||||+|+++|+.|++.|.+|+|||+.+ T Consensus 1 m~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~ 35 (405) T PRK05714 1 MRADLLIVGAGMVGSALALALEGSGLEVLLVDGGP 35 (405) T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 99889999905999999999961899789995899 No 171 >TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Probab=98.37 E-value=5.6e-07 Score=69.28 Aligned_cols=37 Identities=32% Similarity=0.627 Sum_probs=35.5 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 9999898668999999998799399993799715025 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) |||||||.|||+||.+|+++|++|+|+|+.+.+||-| T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~ 37 (430) T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRA 37 (430) T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE T ss_conf 2998786899999999987899889994899881676 No 172 >KOG0029 consensus Probab=98.37 E-value=6.4e-07 Score=68.90 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=36.5 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33199998986689999999987993999937997150 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) +++|+|||||.||++||.+|.+.|.+|++.|..+.+|| T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501) T KOG0029 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 88389989857899999999975982599971477676 No 173 >TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding. Probab=98.33 E-value=2.2e-06 Score=65.03 Aligned_cols=203 Identities=22% Similarity=0.269 Sum_probs=96.5 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE-CCCCCCCHHHH Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816-47753289999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN-IASCHLDLKKM 83 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~-~~~~~~d~~~~ 83 (466) |+|||||-.|++.|.+|++.|++|+|+|+++..|+ ++=+.++.++..... +. ..++=+++. T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~----------~AS~~AaGMLAP~aE------~~~~~~~~f~L~-- 62 (357) T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGG----------GASWAAAGMLAPVAE------VEYAEDPLFDLA-- 62 (357) T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHH----------HHHHHHHHHHHHHCC------CCCCCCHHHHHH-- T ss_conf 97845318789999999974993899965860456----------778866433243266------746767478999-- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCC-CEEECCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 99999999987777787640043101100111002221023575211-2322-100004676652444576653210024 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIE-AKNIVIATGSEASGLPGMSIDFDEQVI 161 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~-ad~iviATGs~p~~iP~~~~~~~~~~~ 161 (466) ..-.+...+..+.+-+..|+++.+ ....++.|..+..+ +.++ -+++.=++|- .-.. T Consensus 63 ----~~S~~~yp~~~~~l~~~tg~~~~y-----~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~-------------~~~~ 120 (357) T TIGR02352 63 ----LESLRLYPEWLEALKELTGLDTGY-----RQCGTLVVAFDEDDVEKLRQLADLQSATGM-------------ELEW 120 (357) T ss_pred ----HHHHHHHHHHHHHHHHCCCCCCEE-----ECCCEEEEECCCCHHHHHHHHHHHHHHHCC-------------EEEE T ss_conf ----999997599999987317995127-----405258940787116888999999875286-------------0465 Q ss_pred EEECCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 53057411111133-32101234454332013220122011100001112212222112222222222222322002344 Q gi|254781053|r 162 VSSTGALSFSSVPK-NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 (466) Q Consensus 162 ~t~~~~~~l~~~P~-~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 240 (466) ++.+.+..++ |. +==|.||=++ ..+.+|- .+++.+.+.+.+++.|++++..+.|.. T Consensus 121 l~~~~~r~~E--P~L~~~~~~a~~~-----------p~d~~v~----------~r~l~~AL~~~~~~lGv~i~~~~~v~~ 177 (357) T TIGR02352 121 LSGRALRRLE--PYLSPGIRGAVYY-----------PDDAHVD----------PRELLKALVKALEKLGVEIIEEVEVQE 177 (357) T ss_pred CCHHHHHHHC--CCCCCCCCEEEEC-----------CCCCCCC----------CHHHHHHHHHHHHHCCCEEEECCCEEE T ss_conf 0779999844--2524220334574-----------8652337----------189999999999856947986253356 Q ss_pred HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 2014687216999721332110000023204531 Q gi|254781053|r 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) ++....+..-.. + ....+.+|.|++|.|.- T Consensus 178 ~~~~~~~~~~~~--~--~~~~~~ad~vV~A~G~w 207 (357) T TIGR02352 178 IEARGEKVTAVV--T--SSGDVQADQVVLAAGAW 207 (357) T ss_pred EECCCCEEEEEC--C--CCCCEECCEEEEECCCC T ss_conf 432676698852--8--85426557479935733 No 174 >TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. Probab=98.31 E-value=5.5e-07 Score=69.37 Aligned_cols=37 Identities=46% Similarity=0.777 Sum_probs=34.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC----CCCCE Q ss_conf 31999989866899999999879939999379----97150 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE----KTYGG 39 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----~~~GG 39 (466) |||+||||||+|-+||..|++.|.+|+||||+ ++=|| T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGG 41 (408) T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGG 41 (408) T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCC T ss_conf 96789816850689999998649748863024326588888 No 175 >TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process. Probab=98.30 E-value=6.4e-07 Score=68.87 Aligned_cols=39 Identities=36% Similarity=0.613 Sum_probs=34.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCE Q ss_conf 9331999989866899999999879--93999937997150 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GG 39 (466) |.-||+|+||||.||+||.++|+.| +||+++|+.=.+|| T Consensus 20 ~e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GG 60 (283) T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGG 60 (283) T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCC T ss_conf 01066798789746689999984299806999851102689 No 176 >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Probab=98.28 E-value=1.3e-06 Score=66.60 Aligned_cols=34 Identities=38% Similarity=0.607 Sum_probs=32.1 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 93--31999989866899999999879939999379 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) || |||+||||||+|+.+|+.|++.|.+|+|||+. T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~ 36 (405) T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQ 36 (405) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 999876899991589999999998589978999379 No 177 >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=98.28 E-value=1.3e-06 Score=66.62 Aligned_cols=54 Identities=15% Similarity=0.340 Sum_probs=39.8 Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222222-222232200234420146872169997213321100000232045312103 Q gi|254781053|r 221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+++ .+|++++++++++++..++++.+++.+ + +++.+|.|+-|-|....+. T Consensus 118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~--g--~~i~a~lvVgADG~~S~vR 172 (395) T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQDGVRVTLDD--G--ETLTARLLVAADGTHSALR 172 (395) T ss_pred HHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECC--C--CEEEECEEEEECCCCHHHH T ss_conf 99988408996997698899999828927999879--9--8998379999289962544 No 178 >PRK06834 hypothetical protein; Provisional Probab=98.27 E-value=1.4e-06 Score=66.38 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=70.3 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---CE--EEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEEC Q ss_conf 93-31999989866899999999879939999379971---50--251366737098999999999999866755-8164 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY---GG--TCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINI 73 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~---GG--tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~ 73 (466) |- |||+|||+||+|+++|+.|+++|.+|+|||+.+.. +. .+++. .|--+++...+...+....... .... T Consensus 1 M~~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~~l~~---rt~eil~~~Gl~d~~~~~g~~~~~~~~ 77 (488) T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAGGLHA---RTLEVLDQRGIVDRFLAEGQVAQVTGF 77 (488) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHCCCCCCCCCC T ss_conf 99898999893889999999999769999999689998776984847789---999999987998999842652111240 Q ss_pred CCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCCCCCCEEECCCCC Q ss_conf 775328999999-------99999998777778764004310110011--10-022210235752112322100004676 Q gi|254781053|r 74 ASCHLDLKKMMS-------YKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEETIEAKNIVIATG 143 (466) Q Consensus 74 ~~~~~d~~~~~~-------~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~~i~ad~iviATG 143 (466) ....+|+...-. ..+..+ ...+...+++.++++..|+- .| .++..|.+...++ ++++++++|=|-| T Consensus 78 ~~~~~~~~~~p~~~~~~~~~~Q~~l---E~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg-~ti~a~ylVGaDG 153 (488) T PRK06834 78 AQIRLDISDFPTRHNYGLALRQNHI---ERILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDG-STLRAQYLVGCDG 153 (488) T ss_pred CCEECCHHHCCCCCCCEEEEEHHHH---HHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCC-CEEEEEEEEEECC T ss_conf 1202567658777783788548999---99999999858997980888999998399689998898-2798758997067 Q ss_pred CCC Q ss_conf 652 Q gi|254781053|r 144 SEA 146 (466) Q Consensus 144 s~p 146 (466) ++. T Consensus 154 a~S 156 (488) T PRK06834 154 GRS 156 (488) T ss_pred CCC T ss_conf 674 No 179 >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] Probab=98.26 E-value=1e-06 Score=67.41 Aligned_cols=38 Identities=42% Similarity=0.677 Sum_probs=35.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 31999989866899999999879939999379971502 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) -||+|+|+||+|++||.++++.|+||+++|+.-.+||- T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG 68 (262) T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG 68 (262) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCC T ss_conf 26799876850578999998679649999730146876 No 180 >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Probab=98.26 E-value=4.8e-07 Score=69.78 Aligned_cols=42 Identities=40% Similarity=0.477 Sum_probs=37.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE Q ss_conf 933199998986689999999987993999937997150251 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL 42 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~ 42 (466) +.|||+|||||..|.-.|..|+.+|++|+|+|+++.-.||-. T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532) T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC T ss_conf 577789989865469999999867984999954765676667 No 181 >PRK09897 hypothetical protein; Provisional Probab=98.26 E-value=2.2e-05 Score=57.64 Aligned_cols=179 Identities=19% Similarity=0.264 Sum_probs=89.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCC-EEEEEECCCC------HHHHHHHH--------------H Q ss_conf 9331999989866899999999879--9399993799715-0251366737------09899999--------------9 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYG-GTCLNIGCIP------SKALLHAS--------------E 57 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~G-GtC~~~GCiP------sK~l~~~a--------------~ 57 (466) || -|.|||+||.|+..-..|-+.+ ++++|+|+....| | || |+.++.+. . T Consensus 1 mk-rIAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~G-------MPYs~e~ns~~mlaNIas~EIPpi~~t~~~W 72 (535) T PRK09897 1 MK-KIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVG-------MPYSDEENSKMMLANIASIEIPPIYCTYLEW 72 (535) T ss_pred CC-EEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC-------CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 95-079966786249999998646998269998215667789-------9868544558887503105588513569999 Q ss_pred HHHHHHHHHHHCCEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEECC----CCCCCCCCCCCC Q ss_conf 999999866755816477532--8999999999999987777787640043101-100111002----221023575211 Q gi|254781053|r 58 MYSHIAKEAGDLGINIASCHL--DLKKMMSYKKSIVESNTQGINFLLKKNKIIT-YHGSARIVS----NNKILVKGSSSE 130 (466) Q Consensus 58 ~~~~~~~~~~~~g~~~~~~~~--d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~-~~g~a~~~~----~~~v~V~~~~~~ 130 (466) +..+.......||++-.+.+- -+++++- -+-+.+++..-++ ..++.|+.+ ++-..+++| ++.+.+....+. T Consensus 73 L~~q~~~~L~~~~id~~~l~~rqflPRiLl-GeYl~~QF~~Lve-~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~ 150 (535) T PRK09897 73 LQKQEASHLQRYGVKKETLHDRQFLPRILL-GEYFRDQFLRLVD-QARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL 150 (535) T ss_pred HHHCCHHHHHHCCCCHHHCCCCCEEHHHHH-HHHHHHHHHHHHH-HHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCC T ss_conf 873888789871998322641010048888-8999999999999-99865966999757666764436995599833788 Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 2322100004676652444576653210024530--574111111333210123445433201322 Q gi|254781053|r 131 ETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSS--TGALSFSSVPKNLLVIGAGVIGLELGSVWT 194 (466) Q Consensus 131 ~~i~ad~iviATGs~p~~iP~~~~~~~~~~~~t~--~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~ 194 (466) ....+|.+|||||-..+. .. +. .+.++.| -....-+..|-+|.|.|+...|+.-|-.++ T Consensus 151 ~~~~FD~vVIaTGH~WP~---~~-e~-~~~YF~SPw~~l~~a~ip~~~VgI~GSSLSAIDAa~ala 211 (535) T PRK09897 151 PSETFDLAVIATGHVWPD---EE-EA-TRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVA 211 (535) T ss_pred CCCCCEEEEEECCCCCCC---CC-CC-CCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHH T ss_conf 764320799807987998---77-67-766678999736542578752776237657899999999 No 182 >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Probab=98.25 E-value=1.5e-06 Score=66.16 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=40.9 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+.+.+.+.+|+++.++++++++.+++++.+++. +| .+++++.++-|-|....+. T Consensus 118 ~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~--dg--~~i~a~lvVgaDG~~S~vR 172 (392) T PRK08773 118 RLWAAVHAAGIQLHCPARVVELEQDADGVRLRLD--DG--SRLEAALAIAADGAASTLR 172 (392) T ss_pred HHHHHHHCCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH T ss_conf 9999986089989748689999966985899977--99--7999889998378874767 No 183 >pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators. Probab=98.24 E-value=9.9e-07 Score=67.49 Aligned_cols=264 Identities=15% Similarity=0.187 Sum_probs=120.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC Q ss_conf 331999989866899999999879--939999379971502513667370989999999999998667558164775328 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD 79 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d 79 (466) +||||+||||.-|-+.+..|+++. ++++|+||-+.++-...| . |+.|...+. ..---+|-.+-.+..+| T Consensus 4 ~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~-------~-wNNAgTgHa-a~cElNYTpe~~dg~i~ 74 (489) T pfam06039 4 KVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSN-------P-WNNAGTGHS-ALCELNYTPEGADGSID 74 (489) T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCC-------C-CCCCCCHHH-HHHHHCCCCCCCCCCCC T ss_conf 10299999628899999999975998748999814752555078-------8-665521000-21341488765688442 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC Q ss_conf 999999999999987777787640043101100111002--221023575211232210000467665244457665321 Q gi|254781053|r 80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD 157 (466) Q Consensus 80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~ 157 (466) .++.++....+- ..++....+. +.++. ..--+|+. ||-..|.+++.-+.++-++=-+.. . +.+|+++. T Consensus 75 i~KA~~IneqFe-~Srqfws~lv-~~g~l--~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~--~-~lF~~Me~--- 144 (489) T pfam06039 75 ISKAVKINEQFQ-ISRQFWAYLV-KEGVL--SNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQ--N-PLFEGMEY--- 144 (489) T ss_pred HHHHHHHHHHHH-HHHHHHHHHH-HCCCC--CCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHC--C-CCCCCCEE--- T ss_conf 799999999999-9999999998-75898--9857850568815898776988999999998505--8-78677784--- Q ss_pred CEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC Q ss_conf 002453057411111-1333210123445433201322012201110000111221222211222222222-22223220 Q gi|254781053|r 158 EQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQLN 235 (466) Q Consensus 158 ~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~~ 235 (466) ++|.-.+++ .| +++-|-.-.=.+|-....-|++|..=. +.+.+.+.|++ .|++++++ T Consensus 145 ------seD~~~i~~w~P---Lv~~gR~~~e~vAat~~~~GTdVnFGa------------LT~~l~~~l~~~~~~~l~~~ 203 (489) T pfam06039 145 ------SEDPEKIKEWVP---LMMEGRDPDEPIAATRIDEGTDVNFGA------------LTRQLFKYLQQKPNVELQYN 203 (489) T ss_pred ------CCCHHHHHHHCC---CCCCCCCCCCCEEEEECCCCCCCCHHH------------HHHHHHHHHHHCCCEEEEEC T ss_conf ------479899986448---003797978855799448874011899------------99999999851898289927 Q ss_pred HHHHHHHCCCCC-CEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEEC--CCCCCCCCCCCCCCEEECCCC Q ss_conf 023442014687-21699972-13321100000232045312103678400001--267642233377633302684 Q gi|254781053|r 236 SKVSSVKKVKGK-AQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGI--NIDHRGCIEIGGQFQTSISTI 308 (466) Q Consensus 236 ~~v~~i~~~~~~-~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi--~~~~~G~I~vd~~~~Ts~p~I 308 (466) ++|+.+++.+++ ..|.+.+. .++..++.++.|++..|-.. ..-|.+.|+ -.+=.|+++--.+++|++|.| T Consensus 204 ~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~s---L~LlQksgi~e~~~yggfPVsG~fl~~~np~~ 277 (489) T pfam06039 204 HEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGA---LPLLQKSGIPESKGYGGFPVSGQFLRCTNPEV 277 (489) T ss_pred CEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHH---HHHHHHCCCHHHCCCCCCCCCCEEEECCCHHH T ss_conf 885345888999879999865789748998267998887577---89999819833236366775556885399899 No 184 >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Probab=98.24 E-value=1.6e-06 Score=65.92 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=42.4 Q ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 122222222222-2232200234420146872169997213321100000232045312103 Q gi|254781053|r 218 AAHCLKIMSKQG-MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 218 ~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+.+.+.+.+.+ |+++.+++++.++.+++.+.+++.. +|+ ++.+|.++-|-|....+. T Consensus 107 ~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~-dG~--~~~a~llVgADG~~S~vR 165 (387) T COG0654 107 LNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-DGE--TLDADLLVGADGANSAVR 165 (387) T ss_pred HHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEEC-CCE--EEECCEEEECCCCCHHHH T ss_conf 99999998718982999577799988539737999903-991--997599998899876999 No 185 >PRK12810 gltD glutamate synthase subunit beta; Reviewed Probab=98.23 E-value=8.3e-08 Score=75.32 Aligned_cols=90 Identities=26% Similarity=0.482 Sum_probs=66.3 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 33321012344543320132201220111000011122-------1--22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .||++|||+|+-|+-.|..|+++|.+||++++.+++-. . +++++.+.-.+.+++.||+|++|+.|-+ T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~---- 218 (472) T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGK---- 218 (472) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCC---- T ss_conf 9989998977899999999986697589972577777546531788555358999999999857978990523187---- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCC-EEE Q ss_conf 68721699972133211000002320453-121 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGR-RPY 276 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn 276 (466) + +++ +...-++|.|++|+|. +|+ T Consensus 219 d----it~-----~~L~~~yDAV~la~Ga~~~r 242 (472) T PRK12810 219 D----ITA-----EQLLAEYDAVFLGGGAYKPR 242 (472) T ss_pred C----CCH-----HHHHCCCCEEEEECCCCCCC T ss_conf 5----769-----99850579899903778785 No 186 >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=98.22 E-value=1.8e-06 Score=65.63 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=31.3 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 3319999898668999999998799399993799 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) ||||+|||+|.||++||+++++.|.+|+++++.+ T Consensus 33 ~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~ 66 (638) T PRK07573 33 KFDIIVVGTGLAGASAAATLGELGYNVKVFCYQD 66 (638) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 4888999966999999999997499569999228 No 187 >PTZ00306 NADH-dependent fumarate reductase; Provisional Probab=98.22 E-value=2e-06 Score=65.23 Aligned_cols=38 Identities=47% Similarity=0.702 Sum_probs=35.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 19999898668999999998799399993799715025 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) -|||||+|.||++||+++++.|.+|+|+||.+.+||.- T Consensus 411 rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS 448 (1167) T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH T ss_conf 68998975799999999997799579995789888740 No 188 >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] Probab=98.22 E-value=1.9e-06 Score=65.45 Aligned_cols=44 Identities=36% Similarity=0.561 Sum_probs=40.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC Q ss_conf 33199998986689999999987993999937997150251366 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G 45 (466) +||.+|+|+|.+|...|..|+++|++|.+||+.+.+||.|--.- T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~ 44 (374) T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA 44 (374) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC T ss_conf 97589987762688999999975987999962566787543434 No 189 >TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll.. Probab=98.22 E-value=1.5e-06 Score=66.17 Aligned_cols=352 Identities=15% Similarity=0.236 Sum_probs=163.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .|||||||.|||+||.-|+++|.+|+|+|.....|| | |..+ .|...-| +++.. T Consensus 3 ~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GG-C--------------AgTF---rRr~ftF--DVGAT------- 55 (499) T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGG-C--------------AGTF---RRRGFTF--DVGAT------- 55 (499) T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCC-C--------------CCCC---CCCCEEE--ECCCE------- T ss_conf 069981872678999999853996799974012787-5--------------4434---3687454--04552------- Q ss_pred HHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC--CEE--ECCCCCCCCCCCCCC------ Q ss_conf 9999999998777778-76400431011001110022210235752112322--100--004676652444576------ Q gi|254781053|r 84 MSYKKSIVESNTQGIN-FLLKKNKIITYHGSARIVSNNKILVKGSSSEETIE--AKN--IVIATGSEASGLPGM------ 152 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~-~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~--ad~--iviATGs~p~~iP~~------ 152 (466) .+.--...+++ .+++..++++= .|+++||-.+.. ..++.+-|. .|. --- =|.+.+||- T Consensus 56 -----QVAGLEpGGiH~riF~~L~~pLP--~A~~lDPAC~V~-L~dg~~PI~lWhDp~rW~~---ER~~qFPGSe~FW~l 124 (499) T TIGR02733 56 -----QVAGLEPGGIHARIFRELGLPLP--EAKILDPACAVY-LPDGSEPINLWHDPERWQK---ERERQFPGSERFWSL 124 (499) T ss_pred -----EECCCCCCCHHHHHHHHCCCCCC--CCCCCCCCCEEE-CCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHH T ss_conf -----21367898579999985488789--884068833677-7879511002358078899---986408885778999 Q ss_pred -------CCCCC-CEEEEEECCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHCC---------------------- Q ss_conf -------65321-0024530574111111-----333210123445433201322012---------------------- Q gi|254781053|r 153 -------SIDFD-EQVIVSSTGALSFSSV-----PKNLLVIGAGVIGLELGSVWTRLG---------------------- 197 (466) Q Consensus 153 -------~~~~~-~~~~~t~~~~~~l~~~-----P~~ivIIGgG~ig~E~A~~~~~lG---------------------- 197 (466) ...+. ...++..+..++|.++ |..++ =+=++.+=+++.|.-.| T Consensus 125 ~~~lf~~nW~F~~RdPvLPprn~WDL~QL~~AlRP~tLl--T~~~~~~Tv~DlL~l~gl~~D~RLr~FLDLQLKLYSQ~~ 202 (499) T TIGR02733 125 CEQLFQSNWRFAQRDPVLPPRNLWDLLQLVSALRPDTLL--TGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQED 202 (499) T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 999986053011678635677778999999874630455--687775339999998336888358887555422332220 Q ss_pred CC-------HHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCEEEEEEE-CCCCCCCE Q ss_conf 20-------111000011122122-----22112222222222222322002344201468-721699972-13321100 Q gi|254781053|r 198 SC-------VKIIEHSGTILNGMD-----KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKG-KAQVVYRST-DDEPINIE 263 (466) Q Consensus 198 ~~-------Vtli~~~~~ll~~~d-----~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~-~g~~~~i~ 263 (466) ++ -|++..+-.+...++ +-+++.+.+.|++.|.+++++.+|++|+..++ ...+++.+. .++...+. T Consensus 203 Ad~TAaLYgATvL~~~Q~P~GLwHL~GSMQ~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~~~~v~~~r~~~~~~~~ 282 (499) T TIGR02733 203 ADETAALYGATVLQMAQAPRGLWHLHGSMQVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAGWVVVVDSRKQEDEQVK 282 (499) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHH T ss_conf 36789999999999843787550013202357899999998679879860023234431684156887416411467744 Q ss_pred EEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC----EEECC-C--CEEEC--------CCCCCCCCCCEECCCC Q ss_conf 00023204531210367840000126764223337763----33026-8--48702--------4333543443000123 Q gi|254781053|r 264 ADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF----QTSIS-T--IYAIG--------DVVRGPMLAHKAEDEG 328 (466) Q Consensus 264 ~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~----~Ts~p-~--IyA~G--------Dv~g~~~l~~~A~~~g 328 (466) +|-|+...-- +.| |+-++.+... ...|- +...| | |+--| ||.+..++. -.++| T Consensus 283 A~d~V~~lPp----q~L-L~l~~~~~~~-----~~~Yr~Rl~~LP~pSGA~V~Y~gvk~~alP~~cp~HlQf~--~D~~G 350 (499) T TIGR02733 283 ADDVVANLPP----QSL-LELLGSELAL-----PPGYRKRLKKLPEPSGAFVLYLGVKRAALPVDCPPHLQFL--SDHQG 350 (499) T ss_pred HHCCEEECCH----HHH-HHHCCCCCCC-----CHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCEEE--CCCCC T ss_conf 2031200774----116-8766876666-----6147999972778897288600013333777787860450--07888 Q ss_pred CCEEEC-CC-------CCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEE-------EEEEECCCCHHHHCC-C Q ss_conf 201201-11-------2222222333322100014455100147888623466589-------999604470344188-9 Q gi|254781053|r 329 IAVAEI-IS-------GQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKV-------GKFPFSANGRARSMN-S 392 (466) Q Consensus 329 ~~aa~~-i~-------~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v-------~~~~~~~~~ra~~~~-~ 392 (466) =+.=|| || ...++.-..++=+.+|||.. .+.=+.+++-.+.+..|.. -+++.....=-+.+- . T Consensus 351 P~gENNSLFVSiS~egDGRAP~G~~TlIAS~FTd~~-~W~~l~~~~Y~~~K~~y~~~~~~~L~~~Fdl~~~~~~H~ElAT 429 (499) T TIGR02733 351 PIGENNSLFVSISQEGDGRAPAGEATLIASSFTDVA-DWSSLDEEDYTAKKKQYTETILERLGEYFDLREENWVHVELAT 429 (499) T ss_pred CCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC T ss_conf 820036402786578688877575367874213712-2117726789999999999999984320679733442234167 Q ss_pred CCEEEEEEEECCCCEEEE Q ss_conf 833899999789986999 Q gi|254781053|r 393 IDGFVKILANEKSDRVEG 410 (466) Q Consensus 393 ~~g~~kli~~~~~~~ilG 410 (466) +++|-|. .++.+| |+| T Consensus 430 PrtF~rw-T~Rp~G-iVG 445 (499) T TIGR02733 430 PRTFERW-TGRPQG-IVG 445 (499) T ss_pred CCCCHHC-CCCCCC-EEC T ss_conf 8860003-789982-043 No 190 >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Probab=98.20 E-value=6.3e-06 Score=61.63 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=54.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .|+|||||.-|+.+|..++++|.+|++||..+.+= ....|. ...+. T Consensus 146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l-----~r~~~~-----------------------------~~~~~ 191 (400) T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM-----GRNAPP-----------------------------PVQRY 191 (400) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC-----CCCCCH-----------------------------HHHHH T ss_conf 39998855899999999997599489995346341-----002698-----------------------------99999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--100222102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) +...++..||+++.+.. .+.+...+.+..+++ +++.+|.+|+|+|.+|+ T Consensus 192 --------------l~~~~~~~GV~~~~~~~v~~~~~g~~~~v~l~~G-~~l~aD~VivaiGv~Pn 242 (400) T PRK09754 192 --------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG-ETLQADVVIYGIGISAN 242 (400) T ss_pred --------------HHHHHHHCCCEEEECCEEEEEECCCEEEEEECCC-CEEECCEEEECCCCCCC T ss_conf --------------9999997898999587589997897799998689-99985899989767537 No 191 >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO).. Probab=98.20 E-value=2.3e-06 Score=64.81 Aligned_cols=39 Identities=38% Similarity=0.596 Sum_probs=34.8 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEE Q ss_conf 319999898668999999998799399993799--715025 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTC 41 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC 41 (466) -||+|||||.|||-||+.+++.|.+|.|+|..+ ..||+. T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNa 42 (467) T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNA 42 (467) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC T ss_conf 23788764258899999986379679840247853257865 No 192 >PRK13339 malate:quinone oxidoreductase; Reviewed Probab=98.20 E-value=1.3e-06 Score=66.52 Aligned_cols=260 Identities=15% Similarity=0.176 Sum_probs=120.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE--CCCCC Q ss_conf 331999989866899999999879--93999937997150251366737098999999999999866755816--47753 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN--IASCH 77 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~--~~~~~ 77 (466) +||||+||||.-|-+.+..++++. ++++|+||-+..+..+.|- |+.|...+. . ..+..+. -.+.. T Consensus 6 ~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~--------wNNAGTGHa-a--~CElNYTp~~~dg~ 74 (497) T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNE--------RNNAGTGHA-A--LCELNYTVQQADGS 74 (497) T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCC--------CCCCCCCCH-H--HHHHCCCCCCCCCC T ss_conf 778899895288999999999769987489998147545440788--------665522100-1--02204887656982 Q ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC Q ss_conf 2899999999999--9987777787640043101100111002--22102357521123221000046766524445766 Q gi|254781053|r 78 LDLKKMMSYKKSI--VESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMS 153 (466) Q Consensus 78 ~d~~~~~~~~~~~--v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~ 153 (466) +|.++.++....+ ..++.. .+.+ .++ +..--.|+. ||-..|.+++..+.++-++=-+. ..| .+++++ T Consensus 75 i~i~KA~~IneqFe~S~QfWs---~lv~-~g~--l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~--~~~-lF~~Me 145 (497) T PRK13339 75 IDIKKAKEINEQFEISKQFWG---HLVK-KGT--IGNPREFINPLPHISFVRGKNNVKFLKKRFEALK--QHP-MFDNIE 145 (497) T ss_pred EEHHHHHHHHHHHHHHHHHHH---HHHH-CCC--CCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH--CCC-CCCCCE T ss_conf 417999999999999999999---9986-578--7985787377982467567588899999999873--487-877768 Q ss_pred CCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC Q ss_conf 5321002453057411111-13332101234454332013220122011100001112212222112222222222-222 Q gi|254781053|r 154 IDFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-GMN 231 (466) Q Consensus 154 ~~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-gV~ 231 (466) + ++|.-.+.+ .| +++=|- .-.=.+|-....-|++|..= .+.+.+.+.|++. |++ T Consensus 146 --------f-seD~~~i~~w~P--Lvm~gR-~~~e~vAAtr~~~GTDVdFG------------aLTr~l~~~l~~~~~~~ 201 (497) T PRK13339 146 --------Y-TEDIEVMAKWMP--LMMPGR-EADEIMAASKIDEGTDVNFG------------ALTRKMAKSLEAHPNAQ 201 (497) T ss_pred --------E-ECCHHHHHHHCC--EEECCC-CCCCCEEEEECCCCEEECHH------------HHHHHHHHHHHHCCCEE T ss_conf --------6-059899975377--522698-97885558825785340189------------99999999997489839 Q ss_pred CCCCHHHHHHHCCC-CCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC--CCCCCCCCCCCCEEECCC Q ss_conf 32200234420146-8721699972-1332110000023204531210367840000126--764223337763330268 Q gi|254781053|r 232 FQLNSKVSSVKKVK-GKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI--DHRGCIEIGGQFQTSIST 307 (466) Q Consensus 232 i~~~~~v~~i~~~~-~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~--~~~G~I~vd~~~~Ts~p~ 307 (466) ++++++|+.+++.. +...+.+++. .++..++.++.|++..|--.- . -|.+.|+.- +=.|+++--.+++|.+|. T Consensus 202 v~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAGG~sL-~--LLQksgi~E~kgyggFPVsG~fl~~~np~ 278 (497) T PRK13339 202 VQYNHEVVDLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAGGGAI-P--LLQKSGIPESKHLGGFPISGQFLRCTNPE 278 (497) T ss_pred EEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHH-H--HHHHCCCCCCCCCCCCCCCCEEEECCCHH T ss_conf 99478863217789998899999657897599993679988873778-9--99984996024657776345689549989 Q ss_pred C Q ss_conf 4 Q gi|254781053|r 308 I 308 (466) Q Consensus 308 I 308 (466) | T Consensus 279 i 279 (497) T PRK13339 279 V 279 (497) T ss_pred H T ss_conf 9 No 193 >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Probab=98.20 E-value=2.8e-06 Score=64.21 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=36.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 9331999989866899999999879939999379971502 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) .+|||+|||||..|.+.|..|+++|++|+|+|+++.-+|| T Consensus 4 ~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GT 43 (545) T PRK11101 4 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA 43 (545) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 6176899998689999999998679939999899761620 No 194 >PRK07045 putative monooxygenase; Reviewed Probab=98.19 E-value=2.6e-06 Score=64.43 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=38.1 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222232200234420146872169997213321100000232045312103 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+++++++++++.++.++++..+.++..+|+ ++.+|.|+-|-|....+. T Consensus 120 ~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~--~~~adlvIGADG~~S~vR 168 (388) T PRK07045 120 PNVRLRFETSIERIERDADGTVTSVTLSDGE--RVAPTVLVGADGARSMIR 168 (388) T ss_pred CCEEEEECCEEEEEEECCCCEEEEEEECCCC--EEEEEEEEECCCCCCHHH T ss_conf 9819997989999998499259999958997--997409999568862788 No 195 >PRK13984 putative oxidoreductase; Provisional Probab=98.18 E-value=1.1e-07 Score=74.43 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=64.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 33321012344543320132201220111000011122-------1--22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .|+++|||+|+-|+-.|..|+++|.+||++++.+++.. . ++.++.+.=.+.|++.||+|++|+.|-+ T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk---- 358 (604) T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK---- 358 (604) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---- T ss_conf 9989998986899999999998698689974567789723315872228789999999999972989976857798---- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 68721699972133211000002320453 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) + +++ +...-.+|.|++++|. T Consensus 359 D----it~-----eeL~~~yDAVfLa~Ga 378 (604) T PRK13984 359 D----ISL-----EELREKHDAVFVSTGF 378 (604) T ss_pred C----CCH-----HHHHHCCCEEEEECCC T ss_conf 4----789-----9997058999995388 No 196 >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Probab=98.17 E-value=3.2e-06 Score=63.80 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=37.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||+|||||.-|..+|..|+.+|++|+|||+++.-+||-.. T Consensus 7 ~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsr 47 (503) T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSA 47 (503) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC T ss_conf 79899997788999999998679969999368756833477 No 197 >PRK08948 consensus Probab=98.17 E-value=1.2e-05 Score=59.60 Aligned_cols=54 Identities=13% Similarity=0.306 Sum_probs=39.5 Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222222-222232200234420146872169997213321100000232045312103 Q gi|254781053|r 221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+++ .+|+++.++++++++.+++++.+++.+ + +++.++.++-|-|....+. T Consensus 115 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~--g--~~~~a~llVgaDG~~S~vR 169 (392) T PRK08948 115 LFALLRKAPGVTLHCPARVANVARTQESVTVTLDN--G--ETLQGKLLVAADGSHSALA 169 (392) T ss_pred HHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECC--C--CEEEECEEEEECCCCHHHH T ss_conf 99999758998785587689988558827999789--9--8998378999189973777 No 198 >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Probab=98.15 E-value=3.4e-06 Score=63.58 Aligned_cols=41 Identities=41% Similarity=0.504 Sum_probs=37.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) |||+|||||.-|..+|+.|+.+|++|+|||+++.-.||--. T Consensus 7 ~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsr 47 (503) T PRK13369 7 YDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSR 47 (503) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC T ss_conf 78899996788899999999689949998268755844476 No 199 >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. Probab=98.15 E-value=8.9e-06 Score=60.57 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=58.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||+-|+.+|..++++|.+|++||+.+.+=. ..+| +.+ T Consensus 139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~------------------------------------~~~d-~~~ 181 (427) T TIGR03385 139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILN------------------------------------KLFD-EEM 181 (427) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------------------------------------CCCC-HHH T ss_conf 899999639999999999976998999984683365------------------------------------5489-999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--100222102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) .+.++..+++.||+++.+.. ++.+.+.+.+- +++ +++.+|.+|+|+|-+|+ T Consensus 182 -----------~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~l-~~g-~~i~~D~vi~a~G~~Pn 234 (427) T TIGR03385 182 -----------NQIVEEELEKHEIELRLNEEVDSIIGEERVGVI-TSG-GVYQADMVILAIGVKPN 234 (427) T ss_pred -----------HHHHHHHHHHCCCEEEECCEEEEEECCCCEEEE-ECC-CEEECCEEEECCCCCCC T ss_conf -----------999999999759799979889999878878999-469-99972899988774676 No 200 >PRK06847 hypothetical protein; Provisional Probab=98.15 E-value=2.5e-07 Score=71.88 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=42.9 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+++.++++++++++++++.+++++.+++.+ |+ ++++|.|+-|-|....+. T Consensus 111 ~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~d--G~--~~~adllIGADG~~S~vR 166 (375) T PRK06847 111 RILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTD--GT--TGRYDLVVGADGVYSKVR 166 (375) T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECC--CC--EEEEEEEEECCCCCCHHH T ss_conf 999998984699799665897866649858999858--98--899879998578762788 No 201 >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Probab=98.15 E-value=3.8e-06 Score=63.22 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=40.0 Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222222-222232200234420146872169997213321100000232045312103 Q gi|254781053|r 221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+++ .+|+++.+++++.++..++++.+++. ++ +++.+|.|+-|-|....+. T Consensus 118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~--~g--~~i~a~lvIgADG~~S~vR 172 (391) T PRK08020 118 LWQALEAHPNVTLRVPASLIALHRHDDGWELELA--DG--ETIQAKLVIGADGANSQVR 172 (391) T ss_pred HHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEC--CC--CEEEECEEEEECCCCCHHH T ss_conf 9999983899699958802688974986899948--99--9998379999079970544 No 202 >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] Probab=98.15 E-value=3.6e-06 Score=63.43 Aligned_cols=39 Identities=44% Similarity=0.629 Sum_probs=35.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 933199998986689999999987993999937997150 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ++|||||||||.||+.||+.++..|.+|+|+||....+| T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562) T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 116989987848889999999966995799972368898 No 203 >TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.. Probab=98.14 E-value=2.6e-06 Score=64.47 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=33.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 99998986689999999987993999937997150 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ++|||||.|||++|++|++.|.+|+|+|+.+..|| T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGG 35 (526) T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGG 35 (526) T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC T ss_conf 96857776899999999737952899860689875 No 204 >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=98.12 E-value=1.7e-07 Score=72.99 Aligned_cols=87 Identities=33% Similarity=0.489 Sum_probs=65.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 3332101234454332013220122011100001112-------21--22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .||++|||+|+-|+-.|..|+++|.+||++++.+++. |. +++++.+.-.+.|++.||+|++|+.|-+- T Consensus 327 GKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGkD--- 403 (654) T PRK12769 327 DKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGKD--- 403 (654) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC--- T ss_conf 99899989778999999999976975799525777886675248622277899999999998269889837176876--- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 68721699972133211000002320453 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +++ +...-++|.|++++|. T Consensus 404 -----itl-----~eL~~~yDAVfla~Ga 422 (654) T PRK12769 404 -----ISL-----ESLLEDYDAVFVGVGT 422 (654) T ss_pred -----CCH-----HHHHHCCCEEEEECCC T ss_conf -----589-----9997369989995178 No 205 >PRK11883 protoporphyrinogen oxidase; Reviewed Probab=98.12 E-value=5.2e-06 Score=62.28 Aligned_cols=38 Identities=26% Similarity=0.560 Sum_probs=35.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEE Q ss_conf 1999989866899999999879--9399993799715025 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTC 41 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC 41 (466) .|+|||||.||++||.+|++.| .+|+|+|+++.+||-| T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i 41 (452) T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKI 41 (452) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE T ss_conf 5999998789999999999649799789998899881038 No 206 >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Probab=98.12 E-value=4.8e-06 Score=62.52 Aligned_cols=39 Identities=33% Similarity=0.556 Sum_probs=35.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 933199998986689999999987993999937997150 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) |++||+|||||.+|+++|.+|++.|.+|++||++...+| T Consensus 3 ~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387) T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 764399989869999999999976991999917988767 No 207 >KOG2415 consensus Probab=98.09 E-value=3.7e-06 Score=63.33 Aligned_cols=45 Identities=42% Similarity=0.685 Sum_probs=37.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCEEEEEECCC Q ss_conf 3199998986689999999987------99399993799715025136673 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQL------KNKVAIIEKEKTYGGTCLNIGCI 47 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~------G~~V~lIE~~~~~GGtC~~~GCi 47 (466) |||+|+||||||++||++++++ ..+|+++||...+||.-+--.|+ T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi 127 (621) T KOG2415 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI 127 (621) T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEE T ss_conf 058998888156788888998887607836899996123147713213050 No 208 >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Probab=98.09 E-value=4.2e-06 Score=62.91 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=40.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE Q ss_conf 22112222222222222322002344201468721699972133211000002320453121 Q gi|254781053|r 215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY 276 (466) Q Consensus 215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn 276 (466) +.+.+.+.+.|++.|++++++++|..++..++....+. ..+| .++++|.|++|+||... T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~-~~~g--~~i~~~~vvlA~Grsg~ 231 (486) T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVK-LTKG--EEIEADYVVLAPGRSGR 231 (486) T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEE-CCCC--CEEECCEEEECCCCCHH T ss_conf 99999999999855828995207889981587079999-2578--48732779990476467 No 209 >PRK04965 nitric oxide reductase; Provisional Probab=98.09 E-value=1.2e-05 Score=59.53 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=18.6 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) ++|||||.-|+.+|..+++.|++|++||+.+ T Consensus 144 vvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~ 174 (378) T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (378) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 9998983889999999996798899976667 No 210 >TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=98.09 E-value=4.2e-07 Score=70.21 Aligned_cols=90 Identities=27% Similarity=0.432 Sum_probs=67.9 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 113332101234454332013220122011100001112-------212--22211222222222222232200234420 Q gi|254781053|r 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NGM--DKEIAAHCLKIMSKQGMNFQLNSKVSSVK 242 (466) Q Consensus 172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 242 (466) +..|||+|||+|+-||=+|.+|+|-|++|++++|-|.+- |.| |+.+-..=.+.|+.-||+|++|++|=+ T Consensus 141 ~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGr-- 218 (480) T TIGR01318 141 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGR-- 218 (480) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEC-- T ss_conf 078278997788602579998751785599974770307601368885110278999999999758927865816503-- Q ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 14687216999721332110000023204531 Q gi|254781053|r 243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 243 ~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) | +.+. ...-++|.|++.+|.- T Consensus 219 --D----~~l~-----~LLe~YDAVFlGvGTY 239 (480) T TIGR01318 219 --D----ISLD-----DLLEDYDAVFLGVGTY 239 (480) T ss_pred --C----CCHH-----HHHHHCCEEEEECCCC T ss_conf --2----5554-----4431148489611433 No 211 >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=98.08 E-value=2.2e-07 Score=72.30 Aligned_cols=86 Identities=27% Similarity=0.497 Sum_probs=65.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 332101234454332013220122011100001112-------21--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ||++|||+|+-|+-.|..|+++|.+||++++.+++. |. +++++.+.-.+.|++.||+|++|+.|-+- T Consensus 311 kKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkD---- 386 (639) T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD---- 386 (639) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC---- T ss_conf 9899989758999999999975990699936888898685358745277789999999998649889919677986---- Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 8721699972133211000002320453 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +++ +...-++|.|++++|. T Consensus 387 ----it~-----~eL~~~yDAVflg~Ga 405 (639) T PRK12809 387 ----ITF-----SDLTSEYDAVFIGVGT 405 (639) T ss_pred ----CCH-----HHHHHHCCEEEEEECC T ss_conf ----889-----9997317989997367 No 212 >PRK08294 phenol 2-monooxygenase; Provisional Probab=98.07 E-value=5.6e-06 Score=62.00 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC Q ss_conf 3319999898668999999998-799399993799 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEK 35 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~ 35 (466) ++||+||||||+||.+|+.|++ .|.++.|||+.+ T Consensus 32 ~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~ 66 (634) T PRK08294 32 EVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKP 66 (634) T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 58889999658999999998713799889992799 No 213 >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Probab=98.06 E-value=7.4e-06 Score=61.14 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=33.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+-||+||||||+|+.+|..|+++|.+++|+|+.+ T Consensus 1 mrt~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~ 35 (392) T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 99889999977999999999997799889997689 No 214 >COG3349 Uncharacterized conserved protein [Function unknown] Probab=98.05 E-value=7.4e-06 Score=61.15 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=38.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 93319999898668999999998799399993799715025136 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI 44 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~ 44 (466) |+ |+|.|||.||++||.+|+++|.+|+|.|..+.+||-|--+ T Consensus 1 ~r--Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485) T COG3349 1 MR--VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE T ss_conf 92--8997462788899999986898539984267668613111 No 215 >PRK06475 salicylate hydroxylase; Provisional Probab=98.05 E-value=7e-06 Score=61.31 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=32.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 31999989866899999999879939999379971 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) =||+||||||||+++|+.|++.|.+|+|+|+.+.+ T Consensus 3 ~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~ 37 (400) T PRK06475 3 GSILIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 97999895889999999999789999999179988 No 216 >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed Probab=98.03 E-value=7.6e-06 Score=61.06 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=31.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 933199998986689999999987993999937 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~ 33 (466) |+|+|+|||||.||..||+.++++|.+|+|+|- T Consensus 2 m~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~em 34 (434) T PRK05335 2 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 34 (434) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 988569989868999999999968996799993 No 217 >PRK11749 putative oxidoreductase; Provisional Probab=98.02 E-value=4.1e-07 Score=70.30 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=65.1 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 333210123445433201322012201110000111221---------22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .||++|||+|+-|+-.|..|+++|.+||++|+.+++... +.+++.+...+.+++.||+|++|+.+.+- T Consensus 140 gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~d--- 216 (460) T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGRD--- 216 (460) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECCC--- T ss_conf 99899989678999999999976984799704787875575458997554479999999998539789855585664--- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCC-EEE Q ss_conf 68721699972133211000002320453-121 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGR-RPY 276 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn 276 (466) +++ +...-++|.|++|+|- +|+ T Consensus 217 -----itl-----~~L~~~ydAV~lAtGa~~~r 239 (460) T PRK11749 217 -----ITL-----DELRAEYDAVFIGTGLGLPR 239 (460) T ss_pred -----CCH-----HHHHHCCCEEEEECCCCCCC T ss_conf -----328-----87741148899944789886 No 218 >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=98.02 E-value=2.7e-05 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.7 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 99999999879939999379971502 Q gi|254781053|r 15 YACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 15 ~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |+||++|++.|++|+||+|.+..++. T Consensus 1 L~AAl~~~~~G~~V~vv~K~~~~~sn 26 (570) T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSH 26 (570) T ss_pred CHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 95789999769918999789999878 No 219 >PRK06370 mercuric reductase; Validated Probab=98.01 E-value=2.9e-05 Score=56.80 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||..|+..|..++++|.+|+|||+.+. T Consensus 172 ~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ 204 (459) T PRK06370 172 HLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPR 204 (459) T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC T ss_conf 499989847799999999963988999996573 No 220 >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=98.01 E-value=9.9e-06 Score=60.23 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=31.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 319999898668999999998799399993799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -||+||||||+|+.+|+.|++.|.+|+|||+.+ T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~ 34 (374) T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 629999966999999999985799699997899 No 221 >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated Probab=98.00 E-value=3.3e-05 Score=56.38 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=60.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||+-|+..|..++++|.+|+|||+.+.+- |. . + -+..+ T Consensus 172 ~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il---------~~-----~-------------------d--~~~~~- 215 (458) T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------PG-----E-------------------D--EDIAH- 215 (458) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC---------CH-----H-------------------H--HHHHH- T ss_conf 59998997479999999996598799998446678---------30-----5-------------------6--78999- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECC-CCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--1002-22102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVS-NNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~-~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) .+...+++.||+++.+.. ++.. ...+.+...++.+++++|.+++|+|-+|+ T Consensus 216 -------------~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vl~a~Gr~Pn 269 (458) T PRK06912 216 -------------ILREKLEEDGVEIFTGAALKGLNNYKKQASFEYEGSIQEVNPDFVLVAVGRKPR 269 (458) T ss_pred -------------HHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCEEEEECCEEEEECCCCCC T ss_conf -------------999999866959982887999986698799995896389964799990487664 No 222 >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated Probab=98.00 E-value=7.7e-06 Score=60.99 Aligned_cols=218 Identities=15% Similarity=0.204 Sum_probs=103.1 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEEECCCCHHHHHHHHHHHHHH-HHHHHHC-CEECCCCCC Q ss_conf 319999898668999999998799399993799--715025136673709899999999999-9866755-816477532 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLNIGCIPSKALLHASEMYSHI-AKEAGDL-GINIASCHL 78 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~~-g~~~~~~~~ 78 (466) |-|+|+|-||||++.|.+|-..|+.|+-||.-+ ++-=. + --|-| ...+++..+ .|....| |+.-....+ T Consensus 402 ~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDGLKIepLp~~-~---~~pir---~~~~l~~~L~eR~~~GFGGVaEygit~ 474 (1048) T PRK06567 402 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITPLPFD-V---HKPIK---FWHEYKNLLSERMPRGFGGVAEYGITV 474 (1048) T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECCEEECCCCHH-H---CCCCH---HHHHHHHHHHHHHHCCCCCEEECCEEE T ss_conf 6489992486520188998747872898654452028746-5---26412---389987656665303656402023567 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 89999999999999877777876400431011001110022210235752112322100004676652444576653210 Q gi|254781053|r 79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE 158 (466) Q Consensus 79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~ 158 (466) .|.+- +.+- +.-.+++..---++|--||-+. ++++. .-.+-+|++-+|||+--+.++.++.... T Consensus 475 rwdkn------~l~~----i~l~l~rr~~f~~~ggvr~ggt--lt~~~---a~~lgfdhia~a~gag~p~~~~~~n~la- 538 (1048) T PRK06567 475 RWDKN------NLDI----LRLILERNNNFKYYDGVALDFN--ITKEQ---AFDLGFDHIAFCIGAGQPKVLDIENFEA- 538 (1048) T ss_pred EECCC------HHHH----HHHHHHHHHCCEEECCEEECCE--EEHHH---HHHCCCCEEEEECCCCCCCCCCCCCCHH- T ss_conf 74420------8999----9999977525646354554562--02989---9874877067431589985026665146- Q ss_pred EEEEEECCCC-CC--------CCCC-----CCCCCCCCCCCCCCCCHHHH--------HCC------------------- Q ss_conf 0245305741-11--------1113-----33210123445433201322--------012------------------- Q gi|254781053|r 159 QVIVSSTGAL-SF--------SSVP-----KNLLVIGAGVIGLELGSVWT--------RLG------------------- 197 (466) Q Consensus 159 ~~~~t~~~~~-~l--------~~~P-----~~ivIIGgG~ig~E~A~~~~--------~lG------------------- 197 (466) ..+....|++ .| ..+. =-++|||||.+|+..|+-.- +|+ T Consensus 539 rGvr~asdflM~Lqltga~~~~s~anlqvrlP~vVIGgGLTaiD~aTE~~ayY~~qVekf~~~yv~~~~~eEe~~Ia~EF 618 (1048) T PRK06567 539 KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEF 618 (1048) T ss_pred HHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 67778999999987343011055324055235699858740243667888888999999999999823787889999999 Q ss_pred -----------------------CCHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC Q ss_conf -----------------------2011100001112212222---1122222222222223220023442014687 Q gi|254781053|r 198 -----------------------SCVKIIEHSGTILNGMDKE---IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGK 247 (466) Q Consensus 198 -----------------------~~Vtli~~~~~ll~~~d~~---~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~ 247 (466) --||+++|.. +-. .|. -.+++.+.|+ +||.+..+.++.++..++-+ T Consensus 619 L~Har~~r~~~~~~e~~~Ll~~WGGVTI~YRk~-L~d--SPAYrlNhEEl~kALe-EGI~f~E~l~P~~i~~D~~g 690 (1048) T PRK06567 619 IAHAKLFKEAKNNEELRKVFNKLGGATVYYRGR-LQD--SPAYKLNHEELIYALA-LGVDFKENMQPLRINVDKYG 690 (1048) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCC-CCC--CCCHHHCHHHHHHHHH-HHHHHHHCCCCEEEECCCCC T ss_conf 999999997440668999999838869998267-666--9521206899999997-21456624885188515667 No 223 >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional Probab=97.99 E-value=3.5e-07 Score=70.80 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=63.3 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 333210123445433201322012201110000111221---------22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .||++|||+|+-|+-.|.+|+++|.+||++++.+.+... +++++.+.=.+.+++.||+|++|+.+-+- T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~d--- 269 (652) T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD--- 269 (652) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC--- T ss_conf 99799968378999999999977990699815888898676448633389999999999999719858866794774--- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 687216999721332110000023204531 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) +++ +...-++|.|++++|-. T Consensus 270 -----itl-----~~L~~~yDAVflaiGa~ 289 (652) T PRK12814 270 -----ITL-----EELQKEFDAVLLAVGAQ 289 (652) T ss_pred -----CCH-----HHHHHHCCEEEEEECCC T ss_conf -----779-----99986589999975578 No 224 >PRK12416 protoporphyrinogen oxidase; Provisional Probab=97.98 E-value=1.3e-05 Score=59.35 Aligned_cols=38 Identities=34% Similarity=0.599 Sum_probs=34.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCE Q ss_conf 933199998986689999999987------993999937997150 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL------KNKVAIIEKEKTYGG 39 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~------G~~V~lIE~~~~~GG 39 (466) || .|+|||||.+|++||.+|.++ +.+|+|+|+.+.+|| T Consensus 1 Mk-~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG 44 (466) T PRK12416 1 MK-TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (466) T ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC T ss_conf 97-599989978999999999872555589986799977998867 No 225 >pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=97.98 E-value=9.7e-07 Score=67.56 Aligned_cols=97 Identities=26% Similarity=0.433 Sum_probs=67.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC------CCCC-------CCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 3210123445433201322012201110000111------2212-------22211222222222222232200234420 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI------LNGM-------DKEIAAHCLKIMSKQGMNFQLNSKVSSVK 242 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l------l~~~-------d~~~~~~~~~~l~~~gV~i~~~~~v~~i~ 242 (466) .++|||||+-|+..|..++++|.+|+|+++.+.. ++.+ ..++.....+.+.+.+++++.++.|++++ T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 80 (277) T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAID 80 (277) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE T ss_conf 99999976999999999984999799993799935755774771164543314561899999987597999687799997 Q ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 146872169997213321100000232045312103 Q gi|254781053|r 243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 243 ~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..+.. ++. .++ .++++|.+++|+|.+|+.. T Consensus 81 ~~~~~--v~~--~~g--~~~~~d~lviAtG~~~~~~ 110 (277) T pfam07992 81 KAGKK--VTL--DDG--KELTYDKLVIATGARPRRP 110 (277) T ss_pred CCCCE--EEE--CCC--CEEECCEEEECCCCCCCCC T ss_conf 89998--998--789--3998599999879986225 No 226 >pfam03486 HI0933_like HI0933-like protein. Probab=97.98 E-value=8.7e-07 Score=67.90 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=57.3 Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEE Q ss_conf 132201220111000011122122--221122222222222223220023442014687216999721332110000023 Q gi|254781053|r 191 SVWTRLGSCVKIIEHSGTILNGMD--KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVL 268 (466) Q Consensus 191 ~~~~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl 268 (466) .+|.++|... -.+...|+.|.-+ .++.+.+.+.+++.||+++++++|++|+..+++...... +..++.+|.|+ T Consensus 83 ~ff~~~Gl~~-~~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~----~~~~~~a~~vI 157 (405) T pfam03486 83 AWFEELGVPL-KEEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDT----GGEELEADSLV 157 (405) T ss_pred HHHHHCCCEE-EECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEE----CCCEEEECEEE T ss_conf 9999779905-977899797898986999999999999779789958887899975994599994----89589727899 Q ss_pred ECCCCE--EEE Q ss_conf 204531--210 Q gi|254781053|r 269 VAAGRR--PYT 277 (466) Q Consensus 269 ~a~G~~--Pn~ 277 (466) +|+|=. |.+ T Consensus 158 lAtGG~s~p~~ 168 (405) T pfam03486 158 LATGGLSWPKT 168 (405) T ss_pred EECCCCCCCCC T ss_conf 90488665655 No 227 >PRK06847 hypothetical protein; Provisional Probab=97.97 E-value=1.3e-05 Score=59.25 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=32.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 9331999989866899999999879939999379971 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) || .|+||||||+|+++|+.|++.|.+|+|+|+.+.+ T Consensus 4 ~k-kV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~ 39 (375) T PRK06847 4 VK-KVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEW 39 (375) T ss_pred CC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 98-7999996689999999999679999999089998 No 228 >PRK06753 hypothetical protein; Provisional Probab=97.97 E-value=1.2e-05 Score=59.58 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=32.3 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 9331999989866899999999879939999379971 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) || |+|||||++|+++|+.|++.|.+|+|+|+.+.+ T Consensus 1 mk--V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~ 35 (373) T PRK06753 1 MK--IAIIGAGIGGLTAAALLQEQGHTVKVFEKNESV 35 (373) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 98--999994589999999999779999998889998 No 229 >PRK09564 coenzyme A disulfide reductase; Reviewed Probab=97.97 E-value=1.2e-06 Score=66.91 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=57.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||+-|+.+|..++++|.+|++||+.+.+= | + ...-++.+. T Consensus 151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l---------~---------------~----------~~d~~~~~~ 196 (443) T PRK09564 151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRIL---------P---------------D----------SFDKEITDV 196 (443) T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCC---------C---------------C----------CCCHHHHHH T ss_conf 59999970999999999986698899999578345---------5---------------6----------678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--100222102-357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKIL-VKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~-V~~~~~~~~i~ad~iviATGs~p~ 147 (466) ++..+++.||++..+.. .+.+.+.+. +..++ .++++|.+++|+|.+|+ T Consensus 197 --------------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~Pn 247 (443) T PRK09564 197 --------------MEEELREKGVELHTSEFVKSLIGEDKVEGVVTNK--GEYEADVVILSTGIKPN 247 (443) T ss_pred --------------HHHHHHHCCCEEEECCEEEEEEECCCEEEEEECC--CEEEEEEEEECCCCCCC T ss_conf --------------9999997797999899899999269899999779--88972389995588535 No 230 >PRK13512 coenzyme A disulfide reductase; Provisional Probab=97.95 E-value=1.8e-06 Score=65.59 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+-|+..|..++++|.+|+|||+.+. T Consensus 150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~ 182 (438) T PRK13512 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK 182 (438) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 799989558999999999972990899993573 No 231 >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] Probab=97.95 E-value=5.1e-05 Score=55.02 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=30.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 999989866899999999879939999379971 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) ++|||||+-|+..|.-.+++|.+|+|||+.+.+ T Consensus 176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~i 208 (454) T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 999898889999999999869978999468877 No 232 >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional Probab=97.95 E-value=6.3e-07 Score=68.92 Aligned_cols=88 Identities=25% Similarity=0.381 Sum_probs=63.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 333210123445433201322012201110000111221---------22221122222222222223220023442014 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) .||++|||||+-|+-.|..|+++|.+||++++.+++... +.+++.+.-.+.+++.||++++|+++.+= T Consensus 137 gkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~d--- 213 (560) T PRK12771 137 GKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGED--- 213 (560) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC--- T ss_conf 99899989778999999999976985899676788898883568754475899999999999649679838784465--- Q ss_pred CCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 687216999721332110000023204531 Q gi|254781053|r 245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) +++. ...-.+|.|++|+|-. T Consensus 214 -----it~~-----~L~~~yDAV~la~Ga~ 233 (560) T PRK12771 214 -----ITLE-----QLEGDYDAVFVAIGAQ 233 (560) T ss_pred -----CCHH-----HHHCCCCEEEECCCCC T ss_conf -----6799-----9717788899916878 No 233 >KOG2311 consensus Probab=97.95 E-value=1.6e-05 Score=58.62 Aligned_cols=33 Identities=39% Similarity=0.695 Sum_probs=30.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 331999989866899999999879939999379 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) +|||||||||.||..||..+++.|.+++|+-.+ T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679) T KOG2311 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679) T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 555799878752048889887418734786325 No 234 >pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase. Probab=97.94 E-value=1.7e-06 Score=65.76 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=13.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 99998986689999999987993999937 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEK 33 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~ 33 (466) |+|||+|..|.-.|.++++...+|.+.-+ T Consensus 186 VlVVG~GnSg~DIA~els~~a~~V~ls~R 214 (532) T pfam00743 186 VLVIGLGNSGGDIAVELSRTAAQVFLSTR 214 (532) T ss_pred EEEECCCCCCCHHHHHHHHHCCEEEEEEE T ss_conf 99978889841059999852786899970 No 235 >PRK05976 dihydrolipoamide dehydrogenase; Validated Probab=97.93 E-value=4e-05 Score=55.82 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=30.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+.|+..|..++++|.+|+|||+.+. T Consensus 177 ~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~ 209 (464) T PRK05976 177 SLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADR 209 (464) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 599989968999999999953986999985365 No 236 >PRK07818 dihydrolipoamide dehydrogenase; Reviewed Probab=97.93 E-value=9.7e-05 Score=53.01 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=30.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+.|+..|..++++|.+|+|||+.+. T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ 206 (467) T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (467) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 699999879999999999832987777621131 No 237 >PRK02106 choline dehydrogenase; Validated Probab=97.93 E-value=1.5e-05 Score=58.90 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=31.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC Q ss_conf 3319999898668999999998-799399993799 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEK 35 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~ 35 (466) .||+||||||+||...|.+|++ .+++|+|||+++ T Consensus 5 eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG~ 39 (555) T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (555) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 12889989668999999998349898599986899 No 238 >PRK07190 hypothetical protein; Provisional Probab=97.91 E-value=1.8e-05 Score=58.33 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=32.0 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) -||+|||+||.|+++|..|+++|.+|++||+.+. T Consensus 6 tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~ 39 (480) T PRK07190 6 ADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDG 39 (480) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 4489999388999999999887999999969999 No 239 >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle. Probab=97.91 E-value=1.2e-05 Score=59.54 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=30.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 33199998986689999999987993999937 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK 33 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~ 33 (466) +||+||||||-|||-||++|++.|+++++|-| T Consensus 2 ~fDvviVGaGGAGlRaAl~la~~G~~tAv~tK 33 (615) T TIGR01816 2 KFDVVIVGAGGAGLRAALQLAKGGLNTAVVTK 33 (615) T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCEEEEEEC T ss_conf 42279886875689999986327923889831 No 240 >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=97.90 E-value=6.1e-05 Score=54.48 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=30.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) -++|||||+.|+..|..++++|.+|+|||+.+. T Consensus 159 ~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 191 (438) T PRK07251 159 RLGILGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 699988864588999999834876899984610 No 241 >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional Probab=97.90 E-value=8.4e-05 Score=53.46 Aligned_cols=94 Identities=18% Similarity=0.357 Sum_probs=56.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||+-|+..|..++++|.+|+|||+.+.+ +| .+|- + T Consensus 178 ~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~l---------l~----------------------------~~d~-~- 218 (465) T PRK05249 178 SLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRL---------LS----------------------------FLDD-E- 218 (465) T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCC---------HH----------------------------HCCH-H- T ss_conf 5999999821799999999609877897216600---------02----------------------------2189-9- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-E-EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 999999999877777876400431011001-1-100-222102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGS-A-RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a-~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) +. +.+...+++.||+++.+. . ++. +++.+.+...++ +++++|.+++|+|-+|+ T Consensus 219 ------~~----~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~D~Vl~a~Gr~pn 274 (465) T PRK05249 219 ------IS----DALSYHFRNSGVVIRHNEEYEKVEGGDDGVILHLKSG-KKIKADCLLYANGRTGN 274 (465) T ss_pred ------HH----HHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCC-CEEEEEEEEECCCCCCC T ss_conf ------99----9999999987929997988999996087679994799-59987089988766667 No 242 >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] Probab=97.90 E-value=6.9e-05 Score=54.10 Aligned_cols=36 Identities=47% Similarity=0.708 Sum_probs=34.0 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 199998986689999999987993999937997150 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) +++|||+|+.|+.+|..++++|++|+++|..+.+|+ T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415) T COG0446 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415) T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 399989349999999999877993899975664233 No 243 >PRK12831 putative oxidoreductase; Provisional Probab=97.90 E-value=9.3e-07 Score=67.71 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=61.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------CC--CC-CCCCCCCCCCCCCCCCCCCCHHHHHHHC Q ss_conf 33321012344543320132201220111000011122-------12--22-2112222222222222322002344201 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------GM--DK-EIAAHCLKIMSKQGMNFQLNSKVSSVKK 243 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~~--d~-~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 243 (466) .||++|||+|+-|+-.|..|+++|.+||++++.+++.. .| +. ++.+.-.+.+++.||++++|+.+-+- T Consensus 140 gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~~~GV~~~~n~~vG~d-- 217 (464) T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVIVGRT-- 217 (464) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC-- T ss_conf 998999897689999999999769917998278888980445168887667899999999998529389915742787-- Q ss_pred CCCCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 4687216999721332110000023204531 Q gi|254781053|r 244 VKGKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 244 ~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) +++.+- ...-.+|.|++|+|.. T Consensus 218 ------is~~~L---~~~~~yDAV~la~Ga~ 239 (464) T PRK12831 218 ------VTIDEL---LEEEGFDAVFIGSGAG 239 (464) T ss_pred ------CCHHHH---HHCCCCCEEEEECCCC T ss_conf ------679999---6356998899944888 No 244 >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport. Probab=97.90 E-value=6.1e-05 Score=54.45 Aligned_cols=136 Identities=24% Similarity=0.385 Sum_probs=76.3 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH Q ss_conf 99998986689999999987993999937997150251366737098999999999999866755816477532899999 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM 84 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (466) ++|||||-=|+..|.-.+++|.+|++||-.+.+ +| ...-|.++.+ T Consensus 181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------Lp--------------------------~~D~evSk~~ 225 (481) T TIGR01350 181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------LP--------------------------GEDAEVSKVV 225 (481) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CC--------------------------CCCHHHHHHH T ss_conf 699878667788999998539808999457500---------35--------------------------4316899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-EEEEEEEE-E----ECCCCCCC--CCCCCC--CCCCCCEEECCCCCCCCCCCCCCC- Q ss_conf 9999999987777787640043-10110011-1----00222102--357521--123221000046766524445766- Q gi|254781053|r 85 SYKKSIVESNTQGINFLLKKNK-IITYHGSA-R----IVSNNKIL--VKGSSS--EETIEAKNIVIATGSEASGLPGMS- 153 (466) Q Consensus 85 ~~~~~~v~~~~~~~~~~~~~~~-V~~~~g~a-~----~~~~~~v~--V~~~~~--~~~i~ad~iviATGs~p~~iP~~~- 153 (466) ...|++.| |+++.++- . --+++.|. +...++ .+++++|++++|.|=+|+ +.++. T Consensus 226 --------------~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn-~~~~GL 290 (481) T TIGR01350 226 --------------KKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPN-TEGLGL 290 (481) T ss_pred --------------HHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCC-CCCCCE T ss_conf --------------99997449849854854423357752878999999879980588987399998424347-676460 Q ss_pred ----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf ----532100245305741111113332101234454332013 Q gi|254781053|r 154 ----IDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSV 192 (466) Q Consensus 154 ----~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~ 192 (466) ...+.+..+.-|+-++ ...| ++--||-=.-+.-||+. T Consensus 291 e~~Gv~~~~rG~i~vd~~~~-Tnv~-~IYAIGDv~gg~mLAH~ 331 (481) T TIGR01350 291 EKLGVKLDERGRIVVDEYMR-TNVP-GIYAIGDVIGGPMLAHV 331 (481) T ss_pred EEEEEEECCCCEEEECCEEE-ECCC-CEEEEEECCCCCHHHHH T ss_conf 21211887898188798325-1689-66688734787026899 No 245 >TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion. Probab=97.88 E-value=2.2e-05 Score=57.72 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=66.9 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) -++|||||+-|+..|=-.+|+|.+|+|+++.+.+ + ...++. . T Consensus 183 sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~l---------------l------------------~~~epe--i--- 224 (494) T TIGR02053 183 SLVVIGGGAIGVELAQAFARLGSEVTILQRSERL---------------L------------------PREEPE--I--- 224 (494) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH---------------C------------------CCCCHH--H--- T ss_conf 6888865289999999998577614036799864---------------4------------------646888--9--- Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEEEEEEE--EEECCC-----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC Q ss_conf 999999999877777876400-431011001--110022-----2102357521123221000046766524445766 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKK-NKIITYHGS--ARIVSN-----NKILVKGSSSEETIEAKNIVIATGSEASGLPGMS 153 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~--a~~~~~-----~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~ 153 (466) ...++..|.. .||+++... .+-++. ..+.++..++.+.+++|+|++|||=+|+ +.+++ T Consensus 225 -----------s~~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN-~~gL~ 290 (494) T TIGR02053 225 -----------SAAVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPN-TDGLN 290 (494) T ss_pred -----------HHHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCC-CCCCC T ss_conf -----------9999998414787799804403554445279818999855898745743112555278756-66677 No 246 >PRK13748 putative mercuric reductase; Provisional Probab=97.87 E-value=8.1e-05 Score=53.58 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=29.9 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC Q ss_conf 11333210123445433201322012201110000 Q gi|254781053|r 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS 206 (466) Q Consensus 172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~ 206 (466) +-|=.++|||+|+-|...|-..+++|.+|+|||+. T Consensus 96 ~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~ 130 (561) T PRK13748 96 EGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99876899895889999999999789979999479 No 247 >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional Probab=97.86 E-value=1e-06 Score=67.36 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=63.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122-------1--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-|+-.|..|+++|.+||++|+.+++-. . +++++.+.=.+.|++.||+|++|+.+-+-...+ T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkdit~~ 519 (760) T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKTISVE 519 (760) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCCHH T ss_conf 98999897789999999999779906998058888975765486110878999999999986497998995778868999 Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 8721699972133211000002320453 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +-..-.+|.|++++|. T Consensus 520 ------------eL~~egyDAVfla~Ga 535 (760) T PRK12778 520 ------------ELEEEGFKGIFVASGA 535 (760) T ss_pred ------------HHHHCCCCEEEEECCC T ss_conf ------------9975889999994067 No 248 >KOG2820 consensus Probab=97.86 E-value=0.00014 Score=51.74 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=32.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 933199998986689999999987993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |-.|++|||+|-=|+++|.+|+++|.++.|+|+.+. T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ 41 (399) T KOG2820 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL 41 (399) T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCC T ss_conf 651699986640000889999865770798733677 No 249 >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Probab=97.86 E-value=2.5e-05 Score=57.26 Aligned_cols=38 Identities=32% Similarity=0.598 Sum_probs=35.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEE Q ss_conf 9331999989866899999999879--939999379971502 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGT 40 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGt 40 (466) |+ ++|||||.+||+||.+|++++ .+++|+|+++.+||. T Consensus 1 ~~--i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444) T COG1232 1 MK--IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444) T ss_pred CE--EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCE T ss_conf 93--99987828889999999985899867998348877865 No 250 >PRK06416 dihydrolipoamide dehydrogenase; Reviewed Probab=97.85 E-value=4.8e-05 Score=55.22 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=30.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+-|+..|..++++|.+|+|||+.+. T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 206 (462) T PRK06416 174 SLVVIGGGYIGIEFASAYASLGAEVTIIEALPR 206 (462) T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEECCCC T ss_conf 699988978788999999973976899740543 No 251 >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=97.85 E-value=0.00011 Score=52.58 Aligned_cols=93 Identities=23% Similarity=0.432 Sum_probs=57.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||+-|+..|..++++|.+|+|||+.+.+ +|. .++ +..+ T Consensus 160 ~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~i---------l~~------------------------~D~--~~~~- 203 (441) T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF---------LPR------------------------EDR--DIAD- 203 (441) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CCC------------------------CHH--HHHH- T ss_conf 7999898589999999999759878897046732---------663------------------------114--6899- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--100-222102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) .+...+++.||+++.+.- ++. +...+.+...+ ..+.+|.+++|+|-+|+ T Consensus 204 -------------~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~vlva~Gr~Pn 255 (441) T PRK08010 204 -------------NIATILRDQGVDIILNAHVERISHHENQVQVHSEH--AQLAVDALLIASGRQPA 255 (441) T ss_pred -------------HHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECC--CEEEEEEEEEECCCCCC T ss_conf -------------99999987885997386799999539989999768--67866489994476655 No 252 >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Probab=97.85 E-value=2.1e-06 Score=65.15 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=60.0 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122-------1--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-|+-.|..|++.|.+||++++.+++.+ . ++.++.+.=.+.+++.||+|++|... + T Consensus 538 kKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f~tnvg~------d 611 (1012) T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------D 611 (1012) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC------C T ss_conf 8899989778999999999977995699815897885478558877789999999999999689699979988------8 Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 87216999721332110000023204531 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) +++. +-..-.+|.|++++|-. T Consensus 612 ----itle----eL~~egYDAVfLa~GA~ 632 (1012) T TIGR03315 612 ----LTVA----ELKNQGYKYVILAIGAW 632 (1012) T ss_pred ----CCHH----HHHHCCCCEEEEECCCC T ss_conf ----8899----99658999999956899 No 253 >PRK05868 hypothetical protein; Validated Probab=97.83 E-value=2.3e-06 Score=64.80 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=39.5 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 22222322002344201468721699972133211000002320453121036 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) +.+++++++.+++.++++++++.|++.++ . +.++|.|+-|-|....+.. T Consensus 116 ~~~v~~~~g~~v~~i~~~~~~V~V~f~dg--~--~~~~DlVIGADGi~S~VR~ 164 (372) T PRK05868 116 QPTVEYLFDDSISTLQDDGAAVRVTFERA--A--AREFDLVIGADGLHSNVRR 164 (372) T ss_pred CCCEEEEECCEEEEEEECCCEEEEEEECC--C--EEEEEEEEECCCCCHHHHH T ss_conf 58809995788899996499799999079--8--5786589974787417788 No 254 >PRK07538 hypothetical protein; Provisional Probab=97.83 E-value=2.8e-05 Score=56.91 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.4 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) ||+||||||+|+++|+.|++.|.+|+++|+.+.+ T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~ 35 (413) T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPEL 35 (413) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 8999990589999999999789998999369988 No 255 >PRK06116 glutathione reductase; Validated Probab=97.82 E-value=0.00012 Score=52.41 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=30.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+-|+..|..++++|.+|++|++.+. T Consensus 169 ~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~ 201 (450) T PRK06116 169 RVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDA 201 (450) T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC T ss_conf 799999966699999999960984899994484 No 256 >PRK09853 putative selenate reductase subunit YgfK; Provisional Probab=97.82 E-value=2.5e-06 Score=64.61 Aligned_cols=85 Identities=25% Similarity=0.403 Sum_probs=59.9 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122-------1--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) |+++|||+|+-|+-.|..|++.|.+||++++.+++.+ . ++.++.+.=.+.+++.||+|++|.. . + T Consensus 551 KKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnvg-----~-d 624 (1032) T PRK09853 551 HPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGCS-----P-D 624 (1032) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCC-----C-C T ss_conf 979998968899999999997799369981589788426735887678999999999999977969996999-----9-8 Q ss_pred CCCEEEEEEECCCCCCCE-EEEEEECCCCE Q ss_conf 872169997213321100-00023204531 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIE-ADAVLVAAGRR 274 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~-~D~vl~a~G~~ 274 (466) +++ +...-+ +|.|++|+|-. T Consensus 625 ----itl-----e~L~~eGyDAVfLa~GA~ 645 (1032) T PRK09853 625 ----LTV-----EQLKNQGYHYVLLAIGAD 645 (1032) T ss_pred ----CCH-----HHHHHCCCCEEEEECCCC T ss_conf ----889-----999657999999945889 No 257 >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] Probab=97.81 E-value=1.8e-05 Score=58.33 Aligned_cols=89 Identities=31% Similarity=0.500 Sum_probs=66.5 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122-------1--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-|+-.|..|++.|..||++++.+++.. . .+.++.+...+.|++.|++|++++.+-. + T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----~ 199 (457) T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----D 199 (457) T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC----C T ss_conf 679998889515558899986898799826667774479814844646420689999999874909998667799----6 Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC-EEE Q ss_conf 8721699972133211000002320453-121 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR-RPY 276 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn 276 (466) +++ +...-++|.|++++|. +|+ T Consensus 200 ----it~-----~~L~~e~Dav~l~~G~~~~~ 222 (457) T COG0493 200 ----ITL-----EELLKEYDAVFLATGAGKPR 222 (457) T ss_pred ----CCH-----HHHHHHHCEEEEECCCCCCC T ss_conf ----789-----99865328799932667887 No 258 >PRK06996 hypothetical protein; Provisional Probab=97.80 E-value=3.2e-05 Score=56.52 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=37.9 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+++.++.+..+..+..+....+++.++... ++...++.++.++-|-|...++. T Consensus 119 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~a~llVgaDG~~S~vR 177 (397) T PRK06996 119 AALARAVRGTGVTWLTSTTARAPAQDADGVTLALDT-PQGARTLRARIAVQAEGGLFHDQ 177 (397) T ss_pred HHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEECEEEECCCCCHHHH T ss_conf 999999974898798344514577636745899605-99865998189999599981888 No 259 >PRK05868 hypothetical protein; Validated Probab=97.79 E-value=4.3e-05 Score=55.60 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=32.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 933199998986689999999987993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) || -|+|+|||+||+++|..|++.|.+|+|+|+.+. T Consensus 1 ~~-kVlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~ 35 (372) T PRK05868 1 MK-TVLVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372) T ss_pred CC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 99-999989888999999999858998899957999 No 260 >PRK08244 hypothetical protein; Provisional Probab=97.79 E-value=3.1e-06 Score=63.91 Aligned_cols=18 Identities=6% Similarity=0.202 Sum_probs=8.4 Q ss_pred CCHHHHHHHHHHHHCCCC Q ss_conf 788999999999860897 Q gi|254781053|r 446 PTMSEAVREAALSCFDQP 463 (466) Q Consensus 446 Pt~~E~l~~aa~~~~~~~ 463 (466) |.-...|.+|+..+++++ T Consensus 476 ~d~~~~l~~al~~~~g~~ 493 (494) T PRK08244 476 PNAEQLIADGITRWCGNA 493 (494) T ss_pred CCHHHHHHHHHHHHHCCC T ss_conf 897899999999960889 No 261 >PRK06834 hypothetical protein; Provisional Probab=97.78 E-value=2.2e-06 Score=64.93 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=9.6 Q ss_pred CHHHHHHHHHHHHCCCC Q ss_conf 88999999999860897 Q gi|254781053|r 447 TMSEAVREAALSCFDQP 463 (466) Q Consensus 447 t~~E~l~~aa~~~~~~~ 463 (466) +..+.+.+|+..||+.| T Consensus 469 ~~~~~~~~al~~~~g~~ 485 (488) T PRK06834 469 GTDDGLRDALTTWFGPP 485 (488) T ss_pred CCCHHHHHHHHHHHCCC T ss_conf 98366999999975887 No 262 >PRK06292 dihydrolipoamide dehydrogenase; Validated Probab=97.78 E-value=8.7e-05 Score=53.35 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=31.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) .++|||||+.|+..|..++++|.+|+|||+.+.+ T Consensus 171 ~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~l 204 (460) T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 6999998678879999998469869999624754 No 263 >PRK06327 dihydrolipoamide dehydrogenase; Validated Probab=97.78 E-value=0.00013 Score=52.04 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) .++|||||+-|+..|..++++|.+|+|||+.+.+ T Consensus 185 ~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~ 218 (475) T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 7999967475899999999549859999853643 No 264 >PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed Probab=97.77 E-value=3.7e-05 Score=56.05 Aligned_cols=35 Identities=34% Similarity=0.492 Sum_probs=31.8 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 19999898668999999998799399993799715 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G 38 (466) ||+|||||.||.++|..|+++|.+|+|+|+++..+ T Consensus 258 ~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A 292 (660) T PRK01747 258 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 292 (660) T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 18998938999999999997899689994798756 No 265 >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Probab=97.77 E-value=4e-05 Score=55.83 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=34.9 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 1999989866899999999879939999379971502 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) +|+|||+|+||++||..|+..|.+|+++||++-+||- T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR 39 (331) T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR 39 (331) T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 4799756368899999998669579999738875531 No 266 >PRK06115 dihydrolipoamide dehydrogenase; Reviewed Probab=97.77 E-value=0.00014 Score=51.75 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=30.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+-|+..|..++++|.+|+|||+.+. T Consensus 176 ~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~ 208 (466) T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 799995858999999999861984789983342 No 267 >COG1231 Monoamine oxidase [Amino acid transport and metabolism] Probab=97.76 E-value=4.8e-05 Score=55.24 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=38.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE Q ss_conf 31999989866899999999879939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~ 43 (466) =||||+|+|.+|++||..+.+.|.+|+++|..+.+||-|.- T Consensus 8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450) T COG1231 8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEE T ss_conf 86899897268889999876468189998646776764677 No 268 >KOG0042 consensus Probab=97.74 E-value=6e-05 Score=54.51 Aligned_cols=40 Identities=38% Similarity=0.644 Sum_probs=36.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3319999898668999999998799399993799715025 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) .|||+|||||..|--||+.++-+|+||+|+|+++.-.||- T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680) T KOG0042 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680) T ss_pred CCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCC T ss_conf 5537998888667541212011452147774266457765 No 269 >PRK07045 putative monooxygenase; Reviewed Probab=97.74 E-value=6.9e-06 Score=61.36 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=32.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 3199998986689999999987993999937997 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) +||+||||||+|+++|+.|++.|.+|+|+|+.+. T Consensus 6 ~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~ 39 (388) T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 8589999288999999999867998999908998 No 270 >PRK12770 putative glutamate synthase subunit beta; Provisional Probab=97.73 E-value=4.1e-06 Score=63.01 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=62.9 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC----CC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122----12-----22211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN----GM-----DKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~----~~-----d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) |+++|||+|+-|+-.|..++++|.+|+++++.+.+-. .. ..+......+.+++.|++++++.++..-.... T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~~ 97 (350) T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPPH 97 (350) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCEE T ss_conf 98999995588999999999789985999536969828998347976668899999999997097697320998502011 Q ss_pred --CCCEEEEEEECCCCCCCEEEEEEECCCC-EEEE Q ss_conf --8721699972133211000002320453-1210 Q gi|254781053|r 246 --GKAQVVYRSTDDEPINIEADAVLVAAGR-RPYT 277 (466) Q Consensus 246 --~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn~ 277 (466) ............+....++|.|++|+|. +|+. T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~ 132 (350) T PRK12770 98 EEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRK 132 (350) T ss_pred EEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCC T ss_conf 33032035776018987741899999658997735 No 271 >PRK07845 flavoprotein disulfide reductase; Reviewed Probab=97.72 E-value=0.00017 Score=51.21 Aligned_cols=94 Identities=20% Similarity=0.354 Sum_probs=56.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH Q ss_conf 19999898668999999998799399993799715025136673709899999999999986675581647753289999 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM 83 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (466) .++|||||.-|+..|..++++|.+|+|||+.+.+ +|. .+ .+..+. T Consensus 180 ~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~---------L~~------------------------~d--~~~~~~ 224 (467) T PRK07845 180 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV---------LPG------------------------ED--ADAAAV 224 (467) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC---------CCC------------------------CC--HHHHHH T ss_conf 6999898799999999999739879999955744---------543------------------------18--889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 9999999998777778764004310110011--100-222102357521123221000046766524 Q gi|254781053|r 84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS 147 (466) Q Consensus 84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~ 147 (466) +...+++.||+++.+.. .+. +.+.+.+...++ +++++|.+++|+|-+|+ T Consensus 225 --------------~~~~l~~~gv~i~~~~~~~~v~~~~~~~~v~~~~g-~~i~~d~vl~a~Gr~Pn 276 (467) T PRK07845 225 --------------LEEVFARRGMTLLKRSRAESVTRTGDGVLVTLTDG-RTVEGSHALMAVGSVPN 276 (467) T ss_pred --------------HHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCC-CEEEEEEEEEECCCCCC T ss_conf --------------99999976909972887999998098269998899-79987799995450255 No 272 >TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Probab=97.70 E-value=6.6e-05 Score=54.24 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=31.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC Q ss_conf 9331999989866899999999879-9399993799715 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYG 38 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~G 38 (466) || |+|||||+||+++|+.|++.| .+|+|+|+.+.+. T Consensus 1 mk--V~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~ 37 (414) T TIGR03219 1 LR--VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 98--99999448999999999853999889994289888 No 273 >PRK06475 salicylate hydroxylase; Provisional Probab=97.70 E-value=5.5e-06 Score=62.09 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=44.6 Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 122222222-22222322002344201468721699972133211000002320453121036 Q gi|254781053|r 218 AAHCLKIMS-KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 218 ~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) .+.+.+.+. ..+|+++++.++++++.+++++.+.+...++ .+++++|.|+-|-|....+.. T Consensus 110 ~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~-~~~~~adlvIGADGi~S~vR~ 171 (400) T PRK06475 110 QSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNS-VETVSAAYLIACDGVWSMLRQ 171 (400) T ss_pred HHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCC-CEEEECCEEEECCCCCCCHHH T ss_conf 99999999748994897387899999528960489973898-669970689966997631333 No 274 >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Probab=97.67 E-value=5.9e-06 Score=61.85 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=66.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHC---CCCHHHHHHCCCCC-----CC-----CC-CCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 321012344543320132201---22011100001112-----21-----22-221122222222222223220023442 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRL---GSCVKIIEHSGTIL-----NG-----MD-KEIAAHCLKIMSKQGMNFQLNSKVSSV 241 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~l---G~~Vtli~~~~~ll-----~~-----~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i 241 (466) ++||||||+-|+.+|..|++. +.+||||++++... |. ++ .++.-.+.+.+.+.|++++.+ +|++| T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~V~~I 79 (364) T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364) T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEECCHHHHHHHCCCEEEEE-EEEEE T ss_conf 99999960999999999704178998399999988651625169997404779992216899997779499963-78999 Q ss_pred HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 01468721699972133211000002320453121036 Q gi|254781053|r 242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) +..+. .|++. ++ .++++|.+++|+|.+|+... T Consensus 80 D~~~k--~V~~~--~g--~~l~YD~LViAtGs~~~~~~ 111 (364) T TIGR03169 80 DPDRR--KVLLA--NR--PPLSYDVLSLDVGSTTPLSG 111 (364) T ss_pred ECCCC--EEEEC--CC--CEEECCEEEEECCCCCCCCC T ss_conf 76889--89988--99--88736889994367778899 No 275 >PRK07236 hypothetical protein; Provisional Probab=97.66 E-value=7.2e-05 Score=53.96 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=30.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 319999898668999999998799399993799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) --|+|||||+||+++|+.|++.|.+|+|+|+.+ T Consensus 7 ~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~ 39 (386) T PRK07236 7 PRAVVVGGSLGGLFAANLLRRAGWDVDVFERSP 39 (386) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 968999936899999999985899989986899 No 276 >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process. Probab=97.65 E-value=5.6e-05 Score=54.74 Aligned_cols=197 Identities=11% Similarity=0.097 Sum_probs=96.4 Q ss_pred CCCCCCCCCCCC---CCCCCCHHHHHHHCC-----CCCCEEEEEEECCCCCC---CEEEEEEECCCCEEEECCCCCEEEE Q ss_conf 122222222222---223220023442014-----68721699972133211---0000023204531210367840000 Q gi|254781053|r 218 AAHCLKIMSKQG---MNFQLNSKVSSVKKV-----KGKAQVVYRSTDDEPIN---IEADAVLVAAGRRPYTKGLGLEEIG 286 (466) Q Consensus 218 ~~~~~~~l~~~g---V~i~~~~~v~~i~~~-----~~~~~v~~~~~~g~~~~---i~~D~vl~a~G~~Pn~~~l~Le~~g 286 (466) .+.+.+.+.+.. |.++...+++++..+ .+.+.+++.++ .+ +.++.||-|-|+.-.+. +.+| T Consensus 126 ~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~G----~~~~~l~a~LlvgADG~~S~vR----~~~g 197 (445) T TIGR01988 126 QQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSDEVELTLSDG----RQKLLLRARLLVGADGANSKVR----QLAG 197 (445) T ss_pred HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEECCC----CEEEEEEECEEEEECCCCHHHH----HHHC T ss_conf 9999999996689647751672147740367756886079997089----4767898532787358652579----9718 Q ss_pred CCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC--CCCC---CCCC--CCCCCCEEEHH-HHH Q ss_conf 12676422333776333026848702433354344300012320120111--2222---2223--33322100014-455 Q gi|254781053|r 287 INIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS--GQKG---HVNY--GIIPSVVYTHP-EVA 358 (466) Q Consensus 287 i~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~--~~~~---~~~~--~~ip~~vft~p-eia 358 (466) |+.... =+|.||.+ |+.- .| ...+.-.|.+.+. ..+- ++.- +.-.+.|||.| +-| T Consensus 198 I~~~~~-----R~Y~Q~a~--------Va~v---~~-~~~h~~~A~erF~~~~GP~AlLPL~~~dd~~~slVW~~~~~~A 260 (445) T TIGR01988 198 IPTTGW-----RDYGQSAV--------VANV---KH-ERPHQGTAWERFLPDTGPLALLPLPDNDDNRSSLVWTLPPEEA 260 (445) T ss_pred CCCCEE-----ECCCCEEE--------EEEE---EE-CCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHH T ss_conf 884301-----16455389--------9999---71-4788964799982799857873588888960389973897999 Q ss_pred H--HHHCHHHHHH---CCCCEEEE----------------------------EEEECCCCHH------HHCCCCCEEEEE Q ss_conf 1--0014788862---34665899----------------------------9960447034------418898338999 Q gi|254781053|r 359 S--IGKTEEQLKC---EKKSYKVG----------------------------KFPFSANGRA------RSMNSIDGFVKI 399 (466) Q Consensus 359 ~--vGlte~~a~~---~~~~~~v~----------------------------~~~~~~~~ra------~~~~~~~g~~kl 399 (466) . ..|++++-.+ +-.....+ ++.....-.+ +....-.--+=| T Consensus 261 ~~L~~l~~~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~R~~fPL~~~~A~~yv~~R~aL 340 (445) T TIGR01988 261 ERLLALDDEEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGERAAFPLSLRHAKRYVAPRLAL 340 (445) T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCHHHHHHHHHCCCEEE T ss_conf 99867899899999999853315796556789999999873202440068237887687630440334358762598589 Q ss_pred EEECC-CCEEEEEEEEC---CCHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 99789-98699999982---998899999999998789878996 Q gi|254781053|r 400 LANEK-SDRVEGVHIIG---GSAGEMIHEAAVLMEFGGSSEDLA 439 (466) Q Consensus 400 i~~~~-~~~ilG~~~vg---~~a~eli~~~a~ai~~~~t~~~l~ 439 (466) |=|.. +=.=|++|-+- .++..|+..+.-+.+.|..+-+.. T Consensus 341 iGDAAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~ 384 (445) T TIGR01988 341 IGDAAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLA 384 (445) T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 80541357871001002007899999999999884566857777 No 277 >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Probab=97.65 E-value=6.6e-05 Score=54.24 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=33.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 933199998986689999999987993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |+||+||||+|+||-..|.+|++.|.+|+|+|.++. T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542) T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542) T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 889989989871368999998579982899957888 No 278 >PRK05257 malate:quinone oxidoreductase; Validated Probab=97.63 E-value=4.4e-05 Score=55.48 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=118.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE--CCCC Q ss_conf 933199998986689999999987--993999937997150251366737098999999999999866755816--4775 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN--IASC 76 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~--~~~~ 76 (466) ++||||+||||.-+-+.+.-+.++ .++++|+|+-+..+-. -|. -|+.|..-+. ...++.+. -.+. T Consensus 8 ~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~E-------SS~-~wNNAGTGHa---a~CELNYTp~~~dG 76 (499) T PRK05257 8 SKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALE-------SSN-GWNNAGTGHS---ALCELNYTPEQADG 76 (499) T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHH-------HCC-CCCCCCCCHH---HHHHCCCCCCCCCC T ss_conf 866689999528899999999970998748999924600545-------076-6554544021---30221488776798 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC Q ss_conf 328999999999999987777787640043101100111002--221023575211232210000467665244457665 Q gi|254781053|r 77 HLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSI 154 (466) Q Consensus 77 ~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~ 154 (466) .+|.++.+.-...+--. .+....+.+. |+ +..-..|+. ||--.|.+.+....++.++--+. ..| -+++++. T Consensus 77 ~i~i~KA~~Ine~Fe~S-rQfWs~lv~~-g~--l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~--~~~-lF~~Mef 149 (499) T PRK05257 77 SIDISKAVKINEQFQIS-RQFWAYLVEK-GV--LPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALK--ASP-LFAGMEF 149 (499) T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHC-CC--CCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH--CCC-CCCCCEE T ss_conf 37089999999999999-9999999975-88--7896885356883478888587899999999874--386-8788575 Q ss_pred CCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCC Q ss_conf 321002453057411111-1333210123445433201322012201110000111221222211222222222-22223 Q gi|254781053|r 155 DFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNF 232 (466) Q Consensus 155 ~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i 232 (466) ++|.-.+.+ .| +++-|-.-.=-+|-.....|++|..= .+.+.+.+.|.+ .++++ T Consensus 150 ---------sed~~~i~~W~P---Lvm~gR~~~e~vAaTr~~~GTDVnFG------------aLT~~l~~~l~~~~~~~l 205 (499) T PRK05257 150 ---------SEDPAQIKEWAP---LMMEGRDPSEKVAATRIEIGTDVNFG------------ALTRQLVGYLQKQGNFEL 205 (499) T ss_pred ---------CCCHHHHHHHCC---HHCCCCCCCCCEEEEECCCCCCCCHH------------HHHHHHHHHHHHCCCEEE T ss_conf ---------479999986354---30069998985005834787545689------------999999999975898389 Q ss_pred CCCHHHHHHHCCCCC-CEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECC--CCCCCCCCCCCCCEEECCCC Q ss_conf 220023442014687-21699972-133211000002320453121036784000012--67642233377633302684 Q gi|254781053|r 233 QLNSKVSSVKKVKGK-AQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN--IDHRGCIEIGGQFQTSISTI 308 (466) Q Consensus 233 ~~~~~v~~i~~~~~~-~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~--~~~~G~I~vd~~~~Ts~p~I 308 (466) +++.+|+.+.+..++ ..+.+++. .++..++.++.|++..|=-.- . -|.+.||. .+=.|+++--.+++|++|.| T Consensus 206 ~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG~aL-~--LLQksgI~E~~gygGFPVsG~~L~c~npei 282 (499) T PRK05257 206 QLGHEVRDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL-P--LLQKSGIPEAKGYGGFPVSGQFLVCENPEV 282 (499) T ss_pred EECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCCHHH-H--HHHHCCCCHHCCCCCCCCCCEEEECCCHHH T ss_conf 9368875608889998799999878897279982569988881457-8--898839923127566760456883399899 No 279 >PRK07846 mycothione/glutathione reductase; Reviewed Probab=97.63 E-value=0.00027 Score=49.77 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=31.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) .++|||||+-|+..|..++++|.+|+|||+.+.+ T Consensus 170 ~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l 203 (453) T PRK07846 170 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRL 203 (453) T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCC T ss_conf 4999899757999999999529926899746532 No 280 >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Probab=97.61 E-value=7.3e-06 Score=61.17 Aligned_cols=136 Identities=17% Similarity=0.246 Sum_probs=71.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---------EEEEEECCCCHHHHHHHHHHHHHHHHH-HHH-CC Q ss_conf 3319999898668999999998799399993799715---------025136673709899999999999986-675-58 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG---------GTCLNIGCIPSKALLHASEMYSHIAKE-AGD-LG 70 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G---------GtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~-~g 70 (466) +|||+||||||+|+++|+.|++.|.+|+|||+.+... ..+++. .|..++..-.++..+... ... .. T Consensus 6 ~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~---~s~~~L~~lGl~~~i~~~~~~p~~~ 82 (392) T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAA---DNAALLDRLGVWPAVRAARVQPYRR 82 (392) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHCCCCCEEE T ss_conf 9988999906999999999986699789991789875556888736999988---9999999879816677516773135 Q ss_pred EEC------CCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCCCC Q ss_conf 164------7753289999--------9999999998777778764004310110011--10-02221023575211232 Q gi|254781053|r 71 INI------ASCHLDLKKM--------MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEETI 133 (466) Q Consensus 71 ~~~------~~~~~d~~~~--------~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~~i 133 (466) +.. ....++...+ +++ ..+.+. ....+...+|++..+.. .+ .+...+.+..+++. ++ T Consensus 83 ~~v~d~~~~~~~~~~~~~~~~~~lg~iv~~-~~l~~~----L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~-~i 156 (392) T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVEN-DLLVDR----LWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGS-RL 156 (392) T ss_pred EEEEECCCCCEEEECHHHCCCCCCCCEEEH-HHHHHH----HHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCC-EE T ss_conf 899845898347536566285456532254-999999----999986089989748689999966985899977997-99 Q ss_pred CCEEECCCCCCCC Q ss_conf 2100004676652 Q gi|254781053|r 134 EAKNIVIATGSEA 146 (466) Q Consensus 134 ~ad~iviATGs~p 146 (466) +++.+|-|-|++. T Consensus 157 ~a~lvVgaDG~~S 169 (392) T PRK08773 157 EAALAIAADGAAS 169 (392) T ss_pred EEEEEEECCCCCC T ss_conf 9889998378874 No 281 >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. . Probab=97.60 E-value=9.8e-06 Score=60.24 Aligned_cols=88 Identities=28% Similarity=0.363 Sum_probs=66.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 33210123445433201322012201110000111-------22--1222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI-------LN--GMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l-------l~--~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-||-+|+-+++.|-+||++|.-+.+ .| ++|+++.+.=.+.|++.||+|+++.-|-+ T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvGk----- 217 (462) T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVGK----- 217 (462) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECC----- T ss_conf 779998468214688999974798699997148998567536888548757889888876326637994437505----- Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 8721699972133211000002320453 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) .+++.. =-.++-+|.|++++|- T Consensus 218 ---t~TL~e---L~~~YGfDAVFIgtGA 239 (462) T TIGR01316 218 ---TVTLEE---LLEKYGFDAVFIGTGA 239 (462) T ss_pred ---CHHHHH---HHHHCCCCEEEEEECC T ss_conf ---112888---8875197079995068 No 282 >pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Probab=97.59 E-value=0.0001 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=30.8 Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC--CCEE Q ss_conf 199998986689999999987--993999937997--1502 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT--YGGT 40 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~--~GGt 40 (466) |++|||||+||++.|.++.+. +++|+|||+++. +.++ T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d 41 (374) T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNN 41 (374) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC T ss_conf 98999952999999999974089981999978988888998 No 283 >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains.. Probab=97.58 E-value=8.8e-05 Score=53.30 Aligned_cols=30 Identities=47% Similarity=0.673 Sum_probs=29.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCEEEEEC Q ss_conf 1999989866899999999879---93999937 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLK---NKVAIIEK 33 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~ 33 (466) ||||||||-|||-||+++++.| ++|+||-| T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisK 33 (636) T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISK 33 (636) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEC T ss_conf 978881866899999999735779610799955 No 284 >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Probab=97.57 E-value=1.1e-05 Score=59.82 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=65.3 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHC--CCCHHHHHHCCCCC-CCC----------CCCCCCCCCCCCCCCC-CCCCCCHHHH Q ss_conf 33321012344543320132201--22011100001112-212----------2221122222222222-2232200234 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRL--GSCVKIIEHSGTIL-NGM----------DKEIAAHCLKIMSKQG-MNFQLNSKVS 239 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~l--G~~Vtli~~~~~ll-~~~----------d~~~~~~~~~~l~~~g-V~i~~~~~v~ 239 (466) .+++||||||+-|++.|.-+.+. +.+||||++.+..+ ..+ +.++.-.+.+.+++.+ |++..+ +|+ T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405) T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE T ss_conf 7569998986799999997641678871899918876666303355632877756521308998423574489997-899 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 4201468721699972133211000002320453121036 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) +|+..+. +|++.+ ...+++|.+++|+|..+++-+ T Consensus 82 ~ID~~~k--~V~~~~----~~~i~YD~LVvalGs~~~~fg 115 (405) T COG1252 82 DIDRDAK--KVTLAD----LGEISYDYLVVALGSETNYFG 115 (405) T ss_pred EECCCCC--EEEECC----CCCCCCCEEEEECCCCCCCCC T ss_conf 9715679--899578----870236389994587667689 No 285 >PRK06467 dihydrolipoamide dehydrogenase; Reviewed Probab=97.56 E-value=0.00094 Score=45.82 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 199998986689999999987993999937997 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) .++|||||+.|+..|..++++|.+|+|||+.+. T Consensus 176 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 208 (472) T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (472) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 599995647289999999852986899960455 No 286 >KOG0399 consensus Probab=97.56 E-value=3.2e-05 Score=56.55 Aligned_cols=87 Identities=25% Similarity=0.485 Sum_probs=65.9 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 3321012344543320132201220111000011122-------1--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+.|+-.|..|++.|..||+.+|+||+.. . .|+-+.+.-.+.|+++||++.+|+++-+- T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~---- 1861 (2142) T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH---- 1861 (2142) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC---- T ss_conf 4799974684146689998644767999971577674566168752132799999999988618548850322565---- Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 87216999721332110000023204531 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) +.. + ...-+.|.|++|+|.. T Consensus 1862 ----vs~---d--~l~~~~daiv~a~gst 1881 (2142) T KOG0399 1862 ----VSL---D--ELKKENDAIVLATGST 1881 (2142) T ss_pred ----CCH---H--HHHHCCCEEEEEECCC T ss_conf ----567---8--8753057599982788 No 287 >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Probab=97.56 E-value=7.8e-06 Score=60.97 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=68.5 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--E--------EEEEECCCCHHHHHHHHHHHHHHHHH-HHHC-C Q ss_conf 319999898668999999998799399993799715--0--------25136673709899999999999986-6755-8 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--G--------TCLNIGCIPSKALLHASEMYSHIAKE-AGDL-G 70 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--G--------tC~~~GCiPsK~l~~~a~~~~~~~~~-~~~~-g 70 (466) |||+||||||+|+++|+.|++.|.+|+|||+.+... . ..++. +|..++..-.++..+... ...+ . T Consensus 6 ~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~---~s~~~L~~lGvw~~~~~~~~~~~~~ 82 (391) T PRK08020 6 TEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISA---ASVALLKGLGVWDAVQAMRCHPYRR 82 (391) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCCCCEEE T ss_conf 8489999369999999999866997899948998766655798733898788---9999999888848778625687148 Q ss_pred E---ECCC--CCCCHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCC Q ss_conf 1---6477--5328999--------99999999998777778764004310110011--100-22210235752112322 Q gi|254781053|r 71 I---NIAS--CHLDLKK--------MMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIE 134 (466) Q Consensus 71 ~---~~~~--~~~d~~~--------~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~ 134 (466) + +... ..+|... +++. ..+.+.+.+ ..-+..+|+++.+.. .+. ++..+.+..+++ ++++ T Consensus 83 ~~~~~~~~~~~~f~~~~~~~~~lg~~v~~-~~l~~~L~~---~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g-~~i~ 157 (391) T PRK08020 83 LETWEWETAHVVFDAAELKLPELGYMVEN-RVLQQALWQ---ALEAHPNVTLRVPASLIALHRHDDGWELELADG-ETIQ 157 (391) T ss_pred EEEECCCCCEEEECHHHCCCCCCCCCCCH-HHHHHHHHH---HHHHCCCCEEEECCEEEEEEECCCEEEEEECCC-CEEE T ss_conf 98612788558725443289754012126-999999999---998389969995880268897498689994899-9998 Q ss_pred CEEECCCCCCCC Q ss_conf 100004676652 Q gi|254781053|r 135 AKNIVIATGSEA 146 (466) Q Consensus 135 ad~iviATGs~p 146 (466) ++.+|-|-|.+. T Consensus 158 a~lvIgADG~~S 169 (391) T PRK08020 158 AKLVIGADGANS 169 (391) T ss_pred ECEEEEECCCCC T ss_conf 379999079970 No 288 >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Probab=97.55 E-value=6.4e-06 Score=61.58 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=62.5 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 332101234454332013220122011100001112-------21--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-|+-+|..|+++|.+||++++.+++. |. ++.++.+.=.+.|++.||+|++|+.+-+--..+ T Consensus 433 gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~VGkditl~ 512 (993) T PRK12775 433 GKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVVGKTFTIP 512 (993) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEECCCCCHH T ss_conf 80899783788999999999779964897168889972684377767888999999999987894998388865607899 Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 8721699972133211000002320453 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) + +. ..-.+|.|++++|- T Consensus 513 e-----L~------~e~gyDAVFIg~GA 529 (993) T PRK12775 513 Q-----LM------NDRGFDAVFVAAGA 529 (993) T ss_pred H-----HH------HCCCCCEEEEECCC T ss_conf 9-----95------34598989995587 No 289 >TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Probab=97.55 E-value=0.0003 Score=49.44 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) -++|||||+-|+..|..++++|.+|+|||+.+.+ T Consensus 171 ~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~l 204 (452) T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 6999888689999999999619949999967622 No 290 >PRK09126 hypothetical protein; Provisional Probab=97.55 E-value=1.3e-05 Score=59.38 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=71.5 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-------CC--EEEEEECCCCHHHHHHHHHHHHHHHHHH-HH-C Q ss_conf 933199998986689999999987993999937997-------15--0251366737098999999999999866-75-5 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-------YG--GTCLNIGCIPSKALLHASEMYSHIAKEA-GD-L 69 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-------~G--GtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~-~ 69 (466) |+|||+||||||+|+++|+.|+++|.+|+|||+.+. .- +.+++. +|.-++..-.++..+.... .. . T Consensus 2 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~---~s~~~L~~lG~~~~l~~~~~~~~~ 78 (392) T PRK09126 2 MHSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTH---ASREILQRLGAWDRIPEAEISPLR 78 (392) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCCCCEE T ss_conf 98999999925899999999986899899990898533457788862898689---999999987896677750767414 Q ss_pred CEEC---C-CCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCC Q ss_conf 8164---7-7532899----------999999999998777778764004310110011--100-222102357521123 Q gi|254781053|r 70 GINI---A-SCHLDLK----------KMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEET 132 (466) Q Consensus 70 g~~~---~-~~~~d~~----------~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~ 132 (466) .... . ...+++. .++.+ ..+.+.+. +...+..+|++..|.. .+. ++..+.|...++ ++ T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~lg~~v~~-~~l~~~L~---~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g-~~ 153 (392) T PRK09126 79 DAKVLNGRSPFALTFDARGTGADALGYLVPN-HLIRRAAY---EAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANG-RR 153 (392) T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCEECCH-HHHHHHHH---HHHHHCCCCEEECCCEEEEEEECCCEEEEEECCC-CE T ss_conf 6899528875047504755676665000219-99999999---9998589969986988899997598059998589-88 Q ss_pred CCCEEECCCCCCCC Q ss_conf 22100004676652 Q gi|254781053|r 133 IEAKNIVIATGSEA 146 (466) Q Consensus 133 i~ad~iviATGs~p 146 (466) ++++.+|-|=|++. T Consensus 154 i~a~llVgADG~~S 167 (392) T PRK09126 154 LTARLLVAADSRFS 167 (392) T ss_pred EEEEEEEEECCCCC T ss_conf 88779998068886 No 291 >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=97.54 E-value=1.5e-05 Score=58.92 Aligned_cols=139 Identities=18% Similarity=0.285 Sum_probs=69.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----E--EEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEEC Q ss_conf 93319999898668999999998799399993799715----0--251366737098999999999999866755-8164 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----G--TCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINI 73 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----G--tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~ 73 (466) |-|||+||||||+|+++|+.|+++|.+|+|||+.+.-. | .+++- .|.-++..-.++..+......+ .+.. T Consensus 16 ~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~~ra~~l~~---~s~~iL~~lGl~~~i~~~~~~~~~i~~ 92 (413) T PRK07364 16 LDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAKGQAYALSL---LSARIFEGIGVWEKILPHIGPFRQIQL 92 (413) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHHCCCCCEEEE T ss_conf 98998999927999999999986899889991799766678873899589---999999987996898861475425999 Q ss_pred ---CC-C--CCCHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCC--CCCCCCCCCCCCCC Q ss_conf ---77-5--328999--------99999999998777778764004310110011--10-0222--10235752112322 Q gi|254781053|r 74 ---AS-C--HLDLKK--------MMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNN--KILVKGSSSEETIE 134 (466) Q Consensus 74 ---~~-~--~~d~~~--------~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~--~v~V~~~~~~~~i~ 134 (466) .. . .++... +.++ ..+.+.+.+. .....+|+++.+.. .+ .+.+ ++.+...+++++++ T Consensus 93 ~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~l~~~L~~~---~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~ 168 (413) T PRK07364 93 SDADFPGVVRFSPEDLGTEALGYVGEH-QVLLEALQEF---VQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQ 168 (413) T ss_pred EECCCCCEEEECHHHCCCCCCEEEHHH-HHHHHHHHHH---HHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEEE T ss_conf 818987467516554388754233002-9999999999---984899489828779999976983699998299138998 Q ss_pred CEEECCCCCCCC Q ss_conf 100004676652 Q gi|254781053|r 135 AKNIVIATGSEA 146 (466) Q Consensus 135 ad~iviATGs~p 146 (466) ++.+|-|=|++. T Consensus 169 a~llIgaDG~~S 180 (413) T PRK07364 169 SKLVVAADGARS 180 (413) T ss_pred EEEEEEECCCCC T ss_conf 568999318885 No 292 >KOG1336 consensus Probab=97.53 E-value=0.00081 Score=46.30 Aligned_cols=96 Identities=13% Similarity=0.251 Sum_probs=58.0 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCC--CHHHHHHCCCCCCC-------C----CCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 332101234454332013220122--01110000111221-------2----2221122222222222223220023442 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGS--CVKIIEHSGTILNG-------M----DKEIAAHCLKIMSKQGMNFQLNSKVSSV 241 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~--~Vtli~~~~~ll~~-------~----d~~~~~~~~~~l~~~gV~i~~~~~v~~i 241 (466) ++++|+|+|+-|.=++..++..|- +.+|+.+.. ++|. + ..+++....+..++.||++++++.++++ T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~-~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478) T KOG1336 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY-LLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCEEEEE T ss_conf 44999768820335576677528876607874233-47654000133201014562105826676538237970305886 Q ss_pred HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 014687216999721332110000023204531210 Q gi|254781053|r 242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +-.+. ++..++| +++++|.+++|+|..|++ T Consensus 154 D~~~K----~l~~~~G--e~~kys~LilATGs~~~~ 183 (478) T KOG1336 154 DLASK----TLVLGNG--ETLKYSKLIIATGSSAKT 183 (478) T ss_pred ECCCC----EEEECCC--CEEECCEEEEEECCCCCC T ss_conf 41465----7996798--353010699961576665 No 293 >KOG4254 consensus Probab=97.53 E-value=9.8e-05 Score=52.96 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=44.0 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCH Q ss_conf 331999989866899999999879939999379971502513667370 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS 49 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPs 49 (466) .||+||||+|..|+.||.++++.|.+|++.|+....||..+..--||- T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561) T KOG4254 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561) T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEHHCCC T ss_conf 546699658866344789997538606999986304763201000365 No 294 >PRK06753 hypothetical protein; Provisional Probab=97.52 E-value=1.2e-05 Score=59.53 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+.+. .++++.++++++..++++.+++.++ + +.++|.|+-|-|....+. T Consensus 102 ~~L~~~~~~~--~i~~~~~~~~i~~~~~~v~v~~~dg--~--~~~~DlvVGADG~~S~vR 155 (373) T PRK06753 102 DIIKSYVKED--TIFTNHEVTKIENETDKVTIHFAEQ--E--SEAFDLCIGADGIHSVVR 155 (373) T ss_pred HHHHHHCCCC--EEEECCEEEEEEEECCEEEEEECCC--C--EEEEEEEEECCCCCCHHH T ss_conf 9998747458--7995889999993099899998799--7--988879997488776788 No 295 >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=97.51 E-value=1.1e-05 Score=59.77 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=44.9 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC Q ss_conf 22222222222223220023442014687216999721332110000023204531210367840000126 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI 289 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~ 289 (466) +.+.+.+.+.+|.++.++++++++..++++.+++. ++ +++.++.|+-|-|....+.. .+|++. T Consensus 116 ~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l~--~g--~~i~a~llVgADG~~S~vR~----~~gi~~ 178 (405) T PRK05714 116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA--DG--RQLRAPLVVAADGANSAVRR----LAGCAT 178 (405) T ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEECCEEEECCCCCCHHHH----HCCCCC T ss_conf 99999997279889848789999983880799967--99--79863889995899856665----135675 No 296 >KOG2404 consensus Probab=97.50 E-value=0.0013 Score=44.69 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=35.1 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 19999898668999999998799399993799715025 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) -|||||+|-||++|+.++-..|-.|+|+|+...+||.. T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477) T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477) T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 07998774032356777874487599982467767752 No 297 >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Probab=97.49 E-value=1.6e-05 Score=58.66 Aligned_cols=34 Identities=41% Similarity=0.657 Sum_probs=32.9 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9331999989866899999999879939999379 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) |++||+||||||+|+++|+.|++.|.+|+|||+. T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~ 34 (387) T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 9854999997899999999998289968999077 No 298 >PTZ00052 thioredoxin reductase; Provisional Probab=97.48 E-value=0.00055 Score=47.53 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=21.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -++|||||+-|+..|.-++++|.+|+|++++. T Consensus 224 ~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~ 255 (541) T PTZ00052 224 KTLVVGASYVALECAGFLNSLGFDVTVAVRSI 255 (541) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 28998986999999999997598589995377 No 299 >COG3573 Predicted oxidoreductase [General function prediction only] Probab=97.48 E-value=0.0002 Score=50.65 Aligned_cols=42 Identities=36% Similarity=0.535 Sum_probs=36.6 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEE Q ss_conf 3319999898668999999998799399993799--71502513 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLN 43 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~ 43 (466) .|||+|+|+|-||+.||.+++.+|++|+++|.+. .+||+..+ T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW 48 (552) T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW 48 (552) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE T ss_conf 44279987527988999988726765999705554565651343 No 300 >TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process. Probab=97.45 E-value=0.00016 Score=51.50 Aligned_cols=68 Identities=24% Similarity=0.374 Sum_probs=47.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCC--CCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE-CCCCCEEEE-CCC Q ss_conf 21122222222222223220023442014--687216999721332110000023204531210-367840000-126 Q gi|254781053|r 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKV--KGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT-KGLGLEEIG-INI 289 (466) Q Consensus 216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~-~~l~Le~~g-i~~ 289 (466) ...+++++.....|-.++.+++|.+|+.+ .++..|+++... ..+.+..++++.| |=+ ..| |..++ |++ T Consensus 149 ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~---~sy~a~~lvvtaG--aW~s~kL-l~~l~Gie~ 220 (401) T TIGR01377 149 KALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVKTTK---DSYQAKKLVVTAG--AWTSNKL-LKKLGGIEL 220 (401) T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEEEEC---CEEECCEEEEECC--CCHHHHH-CCCCCCEEC T ss_conf 8999999999874968734860366542676789548999727---7032135789538--8612343-130142326 No 301 >TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process. Probab=97.40 E-value=0.00023 Score=50.30 Aligned_cols=80 Identities=35% Similarity=0.397 Sum_probs=47.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHH-CCC-CEEEEECCCCCCEE-EEEECCCCHHHHHH-HHHHHHHHHHHHHHCCEECCCCC Q ss_conf 3319999898668999999998-799-39999379971502-51366737098999-99999999986675581647753 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQ-LKN-KVAIIEKEKTYGGT-CLNIGCIPSKALLH-ASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~-~G~-~V~lIE~~~~~GGt-C~~~GCiPsK~l~~-~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) .|||||||||-=||+.|-+||+ +|- +|+++||+..-||. .=|.=-|=|--|+. ++.+|.+..+. |+.-+-+ T Consensus 30 ~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kL-----weGLs~d 104 (407) T TIGR01373 30 EYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKL-----WEGLSQD 104 (407) T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHCHHHH T ss_conf 54678886886068999998864694068998506216886643421465410264522378889888-----6120012 Q ss_pred CCHHHHHHH Q ss_conf 289999999 Q gi|254781053|r 78 LDLKKMMSY 86 (466) Q Consensus 78 ~d~~~~~~~ 86 (466) +++..++.. T Consensus 105 LNYNvM~Sq 113 (407) T TIGR01373 105 LNYNVMFSQ 113 (407) T ss_pred CCHHHHHHH T ss_conf 020011213 No 302 >PRK07236 hypothetical protein; Provisional Probab=97.39 E-value=2.5e-05 Score=57.24 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=34.4 Q ss_pred CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2232200234420146872169997213321100000232045312103 Q gi|254781053|r 230 MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 230 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..++++.++++++.+++++.+++. +|+ ++++|.|+-|-|....+. T Consensus 113 ~~i~~g~~v~~v~~~~~~v~v~~~--dG~--~~~adlvVGADG~~S~vR 157 (386) T PRK07236 113 EHYHAGEALERVEQDGDRVTAHFA--DGR--EETADLLIGADGGRSAVR 157 (386) T ss_pred CEEEECCEEEEEEEECCEEEEEEC--CCC--EEEEEEEEECCCCCCCHH T ss_conf 889959999999982997999987--998--877628996588775158 No 303 >PRK07190 hypothetical protein; Provisional Probab=97.39 E-value=1.7e-05 Score=58.55 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=23.3 Q ss_pred HHCCCEEEEEEEEE--E-CCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 40043101100111--0-022210235752112322100004676652 Q gi|254781053|r 102 LKKNKIITYHGSAR--I-VSNNKILVKGSSSEETIEAKNIVIATGSEA 146 (466) Q Consensus 102 ~~~~~V~~~~g~a~--~-~~~~~v~V~~~~~~~~i~ad~iviATGs~p 146 (466) +...++++..++.- | .+...+.+...++ ++++++++|=|=|++. T Consensus 119 ~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~g-e~i~a~ylVGcDGa~S 165 (480) T PRK07190 119 LKETAAAVKRSTAIVNIEINEAGCLTTLANG-ERIQSRYVIGADGSRS 165 (480) T ss_pred HHHCCCEEEECCEEEEEEECCCCEEEECCCC-CEEEEEEEEEECCCCC T ss_conf 9866997991528999998589359984899-8998888886067761 No 304 >PRK10262 thioredoxin reductase; Provisional Probab=97.39 E-value=2e-05 Score=57.96 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=64.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC---CCC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 332101234454332013220122011100001---112--------2122-----221122222222222223220023 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG---TIL--------NGMD-----KEIAAHCLKIMSKQGMNFQLNSKV 238 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~---~ll--------~~~d-----~~~~~~~~~~l~~~gV~i~~~~~v 238 (466) -+++|||+|+.|+=.|-.+++.|.++.++++.+ ++. |++. +++.+.+.+.+++.++++..+ .+ T Consensus 7 ~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~i~n~pg~~~~i~G~~l~~~~~~q~~~~~~~i~~~-~v 85 (321) T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HI 85 (321) T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC-CC T ss_conf 00999997689999999999869967999605968742005603561788876477999999999999708748941-23 Q ss_pred HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE Q ss_conf 44201468721699972133211000002320453121 Q gi|254781053|r 239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY 276 (466) Q Consensus 239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn 276 (466) .+++..++...++. +. .++.++.|++|+|..|+ T Consensus 86 ~~i~~~~~~f~v~t---~~--g~~~a~aViiAtG~~~r 118 (321) T PRK10262 86 NKVDLQNRPFRLTG---DS--GEYTCDALIIATGASAR 118 (321) T ss_pred CEEEEECCCEEEEC---CC--CEEEEEEEEEEECCCCC T ss_conf 15774036519975---89--88999899996468655 No 305 >PRK08294 phenol 2-monooxygenase; Provisional Probab=97.38 E-value=3.7e-05 Score=56.06 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=14.5 Q ss_pred CCCCCCCCEEECCCCCCCC Q ss_conf 2112322100004676652 Q gi|254781053|r 128 SSEETIEAKNIVIATGSEA 146 (466) Q Consensus 128 ~~~~~i~ad~iviATGs~p 146 (466) +..++++++++|=|=|++. T Consensus 192 g~~~tvrA~YlVGcDGA~S 210 (634) T PRK08294 192 GEEETVRAKYVVGCDGARS 210 (634) T ss_pred CCEEEEEEEEEEECCCCCC T ss_conf 8437999617987687763 No 306 >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional Probab=97.38 E-value=1.3e-05 Score=59.41 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=63.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 332101234454332013220122011100001112-------21--222211222222222222232200234420146 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) ++++|||+|+-|+-+|..|++.|.+||++++.+.+. |. ++.++.+.-.+.+++.||+|++|+.+-+--..+ T Consensus 307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV~f~~n~~VGk~~tl~ 386 (944) T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECCCCCHH T ss_conf 86799885768999999999779933999447878855895587666878999999999996783999785647768899 Q ss_pred CCCEEEEEEECCCCCCCEEEEEEECCCC-EEE Q ss_conf 8721699972133211000002320453-121 Q gi|254781053|r 246 GKAQVVYRSTDDEPINIEADAVLVAAGR-RPY 276 (466) Q Consensus 246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn 276 (466) +-..-.+|.|++++|- .|. T Consensus 387 ------------eL~~eGydAVfIg~GAg~p~ 406 (944) T PRK12779 387 ------------DLKAEGFWKIFVGTGAGLPT 406 (944) T ss_pred ------------HHHHCCCCEEEEEECCCCCC T ss_conf ------------99768999899974788875 No 307 >KOG0685 consensus Probab=97.34 E-value=0.00034 Score=49.04 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=32.8 Q ss_pred EEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCEE Q ss_conf 999989866899999999879-939999379971502 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGT 40 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~GGt 40 (466) |||||||.||++||.++-+.| ..++++|..+.+||- T Consensus 24 IvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498) T KOG0685 24 IVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498) T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCE T ss_conf 9998985677999999998289648999704666755 No 308 >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. Probab=97.31 E-value=2.9e-05 Score=56.77 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=72.3 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC--CCCC--------CCC----CCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 333210123445433201322012201110000--1112--------212----22211222222222222232200234 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS--GTIL--------NGM----DKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) |=.++|||||+-|+-.|-+.+|.|.++.++... .++. +++ -+++++.+.++.++.|+++.....+. T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515) T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699 Q ss_pred HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 42014687216999721332110000023204531210 Q gi|254781053|r 240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +++..++...+... +| ..+.+..|++|+|.+|+. T Consensus 292 ~i~~~~~~~~v~~~--~g--~~~~aktVIiATGa~~r~ 325 (515) T TIGR03140 292 KIETEDGLIVVTLE--SG--EVLKAKSVIVATGARWRK 325 (515) T ss_pred EEECCCCCEEEEEC--CC--CEEEECEEEECCCCCCCC T ss_conf 99727981899987--99--899939799956987355 No 309 >PTZ00318 NADH dehydrogenase; Provisional Probab=97.31 E-value=4.9e-05 Score=55.17 Aligned_cols=19 Identities=47% Similarity=0.788 Sum_probs=9.6 Q ss_pred EEEECCCHHHHHHHHHHHH Q ss_conf 9999898668999999998 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQ 23 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~ 23 (466) +||+||||.|...|-++++ T Consensus 182 fVVVGGGpTGVElAgeLad 200 (514) T PTZ00318 182 TVVVGGGPTGVEFAANLAE 200 (514) T ss_pred EEEECCCCCHHHHHHHHHH T ss_conf 7897777620328999999 No 310 >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Probab=97.31 E-value=2.9e-05 Score=56.85 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=31.2 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 1999989866899999999879939999379971 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) +|+|||||.+++..|..+++.+.+|+||.+.+.+ T Consensus 145 ~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f 178 (555) T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555) T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 6999838889999999999748908999978756 No 311 >KOG1399 consensus Probab=97.30 E-value=5.9e-05 Score=54.56 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=68.1 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC--C------------------------------------- Q ss_conf 3332101234454332013220122011100001112212--2------------------------------------- Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM--D------------------------------------- 214 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~--d------------------------------------- 214 (466) +++++|||+|+.|+=.|-.+.+-|.+|+++||++.+...+ - T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448) T KOG1399 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCC T ss_conf 78548978566888999999877998369970587454586057656554324342104688444257998975457111 Q ss_pred ----CCCCCCCCCCCCCCCC--CCCCCHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCE--EEECC Q ss_conf ----2211222222222222--232200234420146-87216999721332110000023204531--21036 Q gi|254781053|r 215 ----KEIAAHCLKIMSKQGM--NFQLNSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRR--PYTKG 279 (466) Q Consensus 215 ----~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~--Pn~~~ 279 (466) .++-+++....+.-++ .+.+++++.+++..+ +...|..++..+...+..+|.|++|+|-- |++.. T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448) T KOG1399 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448) T ss_pred CCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCC T ss_conf 78888999999999873583462673465799840567741689814886405899638999556768898876 No 312 >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation. Probab=97.30 E-value=0.00066 Score=46.93 Aligned_cols=94 Identities=24% Similarity=0.352 Sum_probs=56.2 Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHH Q ss_conf 99989866899999999879939999379971502513667370989999999999998667558164775328999999 Q gi|254781053|r 6 AVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMS 85 (466) Q Consensus 6 vIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (466) +|||||-=||.||.-|+.+|.+|-+||-.+.+ .++++++.. .++ T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~a-----------------G~l-- 194 (813) T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTA-----------------GRL-- 194 (813) T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHH-----------------HHH-- T ss_conf 58867415889999998779706446764898-----------------999999999-----------------999-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEE----EECCCC---C-CCCCCCCCCCCCCCEEECCCCCCCCCC Q ss_conf 99999998777778764004310110011----100222---1-023575211232210000467665244 Q gi|254781053|r 86 YKKSIVESNTQGINFLLKKNKIITYHGSA----RIVSNN---K-ILVKGSSSEETIEAKNIVIATGSEASG 148 (466) Q Consensus 86 ~~~~~v~~~~~~~~~~~~~~~V~~~~g~a----~~~~~~---~-v~V~~~~~~~~i~ad~iviATGs~p~~ 148 (466) ....+++.|++++-|+. +++... . -.+.-.+|. .+++|-+|.|+|=||+. T Consensus 195 ------------L~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~-~l~aDlvv~A~GirP~~ 252 (813) T TIGR02374 195 ------------LQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS-SLEADLVVFAAGIRPRD 252 (813) T ss_pred ------------HHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC-EEEECEEEEECCCCCCH T ss_conf ------------99999857957986176110576415640123122423897-88703799951566636 No 313 >PRK07538 hypothetical protein; Provisional Probab=97.24 E-value=5e-05 Score=55.12 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=38.6 Q ss_pred CCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22322002344201468721699972-13321100000232045312103 Q gi|254781053|r 230 MNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 230 V~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..++++.++++++.+++++.+++.+. +++..++++|.|+-|-|....+. T Consensus 119 ~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGADGi~S~VR 168 (413) T PRK07538 119 DAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGADGIHSAVR 168 (413) T ss_pred CEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEECCCCCCHHH T ss_conf 68996778989887499529999715788723998488998889875245 No 314 >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Probab=97.23 E-value=5.5e-05 Score=54.78 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=37.3 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222222222232200234420146-872169997213321100000232045312103 Q gi|254781053|r 221 CLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 221 ~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.....|..++++.+..+++..+ +...|++. .+|+..++.||.|+=|-|....+. T Consensus 109 L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~-~dG~~~~l~a~yvVGcDG~~S~vR 166 (392) T PRK08243 109 LMAAREAAGGPIVFEASDVALHDFDGDRPYVTYT-KDGETHRIDCDFIAGCDGFHGVSR 166 (392) T ss_pred HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEE-CCCCEEEEEEEEEEECCCCCCCCC T ss_conf 9999997699799905999999569982599994-499379999846751688987520 No 315 >PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed Probab=97.22 E-value=4.3e-05 Score=55.54 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.7 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC Q ss_conf 13332101234454332013220122011100001 Q gi|254781053|r 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG 207 (466) Q Consensus 173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~ 207 (466) .|++++|||+|..|+-+|..|++.|.+|||+++.+ T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~ 289 (660) T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADE 289 (660) T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 88718998938999999999997899689994798 No 316 >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=97.21 E-value=3.4e-05 Score=56.28 Aligned_cols=137 Identities=25% Similarity=0.313 Sum_probs=68.9 Q ss_pred CC-CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCC-----C----EEEEEECCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 93-31999989866899999999879---939999379971-----5----02513667370989999999999998667 Q gi|254781053|r 1 MV-YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTY-----G----GTCLNIGCIPSKALLHASEMYSHIAKEAG 67 (466) Q Consensus 1 M~-YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~-----G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~ 67 (466) |+ |||+||||||+|+++|+.|+++| .+|++||+..+. + +.+++. .|+-++....++..+..... T Consensus 1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~---~s~~~L~~lGl~~~l~~~~~ 77 (395) T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAA---GTCQQLARLGVWQALADCAT 77 (395) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCC T ss_conf 971898999938999999999996188997499993788544568887744788889---99999998799288786276 Q ss_pred HC-CEEC------CCCCCCHH--------HHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEE--EE-CCCCCCCCCCCC Q ss_conf 55-8164------77532899--------999999999998777778764-004310110011--10-022210235752 Q gi|254781053|r 68 DL-GINI------ASCHLDLK--------KMMSYKKSIVESNTQGINFLL-KKNKIITYHGSA--RI-VSNNKILVKGSS 128 (466) Q Consensus 68 ~~-g~~~------~~~~~d~~--------~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a--~~-~~~~~v~V~~~~ 128 (466) .+ .+.. ....++.. .+++. ..+ ...+...+ +..+|++..+.. .+ .++..+.+..++ T Consensus 78 pi~~i~v~d~~~~~~~~~~~~~~~~~~lg~~v~~-~~l----~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~ 152 (395) T PRK05732 78 PIRHIHVSDRGHAGFVRLDAEDYGVDALGYVVEL-ADV----GQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDD 152 (395) T ss_pred CCEEEEEEECCCCCCEECCHHHCCCCCCCCEEEH-HHH----HHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECC T ss_conf 5428998406867721056332387656543236-999----99999988408996997698899999828927999879 Q ss_pred CCCCCCCEEECCCCCCCC Q ss_conf 112322100004676652 Q gi|254781053|r 129 SEETIEAKNIVIATGSEA 146 (466) Q Consensus 129 ~~~~i~ad~iviATGs~p 146 (466) + +++++|.+|-|-|.+. T Consensus 153 g-~~i~a~lvVgADG~~S 169 (395) T PRK05732 153 G-ETLTARLLVAADGTHS 169 (395) T ss_pred C-CEEEECEEEEECCCCH T ss_conf 9-8998379999289962 No 317 >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity. Probab=97.21 E-value=0.0004 Score=48.56 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=29.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC Q ss_conf 3199998986689999999987----99399993799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~ 35 (466) |||||+|||++|++-|+-|... .+||+|+|..+ T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d 37 (481) T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVD 37 (481) T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCC T ss_conf 9289888857899999997318732023067865234 No 318 >pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Probab=97.19 E-value=4.1e-05 Score=55.70 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=32.5 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 199998986689999999987993999937997150 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ||+|||||.+|+++|.+|+++|.+|+|||++...+| T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~g 36 (309) T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG 36 (309) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC T ss_conf 999999279999999999978995999949998875 No 319 >TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.. Probab=97.19 E-value=0.00042 Score=48.40 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=33.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 3199998986689999999987993999937997150 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ||+||||+|.+|+-+|.+|+..|+||+++|+==-.|| T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGG 37 (506) T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGG 37 (506) T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCC T ss_conf 9478981683178999999854622553220114788 No 320 >KOG2495 consensus Probab=97.19 E-value=0.0013 Score=44.75 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=64.7 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC--CCC---------CCCCCCCCCCCCCCC--CCCCCCCHHHHHH Q ss_conf 332101234454332013220122011100001112--212---------222112222222222--2223220023442 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL--NGM---------DKEIAAHCLKIMSKQ--GMNFQLNSKVSSV 241 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~l~~~--gV~i~~~~~v~~i 241 (466) |+++|+|+|-.|+-+..-+...-.+|+++..++.++ |.. -+.+.+.+....++. +++++ .++...+ T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~~i 134 (491) T KOG2495 56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTKI 134 (491) T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEE-ECCCEEE T ss_conf 539998575288999875266434249964630068731467764462431034556898862257871698-6260760 Q ss_pred HCCCCCCEEEEEEECC--CCCCCEEEEEEECCCCEEEECCC Q ss_conf 0146872169997213--32110000023204531210367 Q gi|254781053|r 242 KKVKGKAQVVYRSTDD--EPINIEADAVLVAAGRRPYTKGL 280 (466) Q Consensus 242 ~~~~~~~~v~~~~~~g--~~~~i~~D~vl~a~G~~Pn~~~l 280 (466) +.....+.+.-...++ .+..+.+|.+++|+|-.|||-+. T Consensus 135 Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491) T KOG2495 135 DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491) T ss_pred CCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCC T ss_conf 66666798764126888612660266899962677777899 No 321 >PTZ00153 lipoamide dehydrogenase; Provisional Probab=97.17 E-value=0.0023 Score=43.05 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=29.4 Q ss_pred CCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCC-CCCCE-EECC-CCEEECC Q ss_conf 11000002320453121036784000012676422333-77633-3026-8487024 Q gi|254781053|r 260 INIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI-GGQFQ-TSIS-TIYAIGD 313 (466) Q Consensus 260 ~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~v-d~~~~-Ts~p-~IyA~GD 313 (466) .++++.-+++|+|.+|.+. .++++|.+. |.+ |+-+. ...| .+-.+|- T Consensus 279 ~~~~aKnIIIATGS~P~~p------pgi~iD~k~-V~TSd~AL~Le~lPk~m~IIGg 328 (673) T PTZ00153 279 KEFKVKNIIIATGSTPNIP------DNIEIDDKS-VFTSDEAVKLEGLKNYMGIIGM 328 (673) T ss_pred CEEECCEEEECCCCCCCCC------CCCCCCCCE-EECHHHHCCHHHCCCEEEEECC T ss_conf 5550230799018877889------987868766-8630331270007865899877 No 322 >TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.. Probab=97.17 E-value=0.00038 Score=48.68 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=55.6 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC----CCCCEEEEEECCCCHHHHH---HHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 999989866899999999879939999379----9715025136673709899---999999999986675581647753 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE----KTYGGTCLNIGCIPSKALL---HASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----~~~GGtC~~~GCiPsK~l~---~~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) |.||||||||-+||-.|++.|.+..|+|+. ++=||. ||=..+- -+.++++...+. -.-++..+.. T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGA------IPLCMv~EF~lP~d~iDRRV~k--Mk~~SPSN~~ 74 (401) T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGA------IPLCMVDEFDLPRDIIDRRVTK--MKMISPSNIA 74 (401) T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC------CCCCCCCHHCCCHHHHHCCCCE--EEEECCCCHH T ss_conf 8897489741689999985031046332056788778886------4412010103786675121102--2421641013 Q ss_pred CCHHHHHHH-------HHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 289999999-------9999998777778764004310110011 Q gi|254781053|r 78 LDLKKMMSY-------KKSIVESNTQGINFLLKKNKIITYHGSA 114 (466) Q Consensus 78 ~d~~~~~~~-------~~~~v~~~~~~~~~~~~~~~V~~~~g~a 114 (466) +|+...+.. +.++. ...++...++.|-++++|.- T Consensus 75 ~d~gr~L~~~~yIgM~RREVL---DsflR~RA~~~GA~li~Glv 115 (401) T TIGR02028 75 VDIGRTLKEHEYIGMVRREVL---DSFLRERAADAGATLINGLV 115 (401) T ss_pred HHHHCCCCCCCCCCCHHHHHH---HHHHHHHHHHCCCEEECCEE T ss_conf 320002788761251457888---89999999864881414445 No 323 >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=97.15 E-value=5.3e-05 Score=54.94 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=36.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+++.+...+++.+++.++..++.+.+++ .+| .++.+|.|+-|-|....+. T Consensus 113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg--~~i~a~llIgADG~~S~vR 168 (386) T PRK07494 113 RALEARAAELPNIDRFDDEAESVRPRGDEVTVTL--ADG--TTLSARLVVAADGRNSPAR 168 (386) T ss_pred HHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEE--CCC--CEEEEEEEEEECCCCCCCC T ss_conf 9999999718997997770689996698489997--899--6999869999058887431 No 324 >PRK08774 consensus Probab=97.15 E-value=9.5e-05 Score=53.08 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=30.2 Q ss_pred CCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22232200234420146872-169997213321100000232045312103 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+..+.+.++..++...++. .+.+...++ +..+.++.++-|-|....+. T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~~~i~a~llVgADG~~S~vR 173 (402) T PRK08774 124 HLRRYRPARCIGVEPVQDGLRAVRLATADG-EQLVRARLVVGADGSHSAVR 173 (402) T ss_pred CCEEEECEEEEEEEEECCCCCEEEEEECCC-CEEEEECEEEECCCCCCCCH T ss_conf 948982228999999536861699993799-57983059999589984523 No 325 >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Probab=97.14 E-value=0.00068 Score=46.85 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=30.2 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC Q ss_conf 933199998986689999999987--993999937997 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT 36 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~ 36 (466) || |+|||||||||..|+-++++ +++|+++|++++ T Consensus 1 Mk--I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~ 36 (770) T PRK08255 1 MR--IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRP 36 (770) T ss_pred CE--EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 94--9997787589999999986589997479842799 No 326 >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype.. Probab=97.11 E-value=0.00062 Score=47.14 Aligned_cols=32 Identities=41% Similarity=0.673 Sum_probs=30.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCC Q ss_conf 1999989866899999999879-----9399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLK-----NKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G-----~~V~lIE~~~ 35 (466) ||+|||||..|++.|+.|.+.+ .||.|||+.. T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~ 37 (425) T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANS 37 (425) T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC T ss_conf 9788856589999999985067755761589865657 No 327 >PRK06996 hypothetical protein; Provisional Probab=97.08 E-value=9.6e-05 Score=53.04 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=66.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCCCCC------EEEEEECCCCHHHHHHHHHHHHHHHH-------- Q ss_conf 3199998986689999999987----99399993799715------02513667370989999999999998-------- Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEKTYG------GTCLNIGCIPSKALLHASEMYSHIAK-------- 64 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~~~G------GtC~~~GCiPsK~l~~~a~~~~~~~~-------- 64 (466) |||+||||||.|++.|+.|++. |.+|+++|+.+.-. -..++. .|..++..-..+..... T Consensus 12 ~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~Ra~al~~---~s~~~L~~lG~w~~~~~~i~~~~v~ 88 (397) T PRK06996 12 YDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDPRAIALSH---GSRVLLETLGAWPADATPIEHIHVS 88 (397) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEECH---HHHHHHHHCCCCCCCCCCEEEEEEE T ss_conf 8889999279999999999601687896699976898666789993999757---8999999879984568742599994 Q ss_pred HHHHCCE-ECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--E-CCCC--CCCCCCCCCCCCCCC Q ss_conf 6675581-64775328999---999999999987777787640043101100111--0-0222--102357521123221 Q gi|254781053|r 65 EAGDLGI-NIASCHLDLKK---MMSYKKSIVESNTQGINFLLKKNKIITYHGSAR--I-VSNN--KILVKGSSSEETIEA 135 (466) Q Consensus 65 ~~~~~g~-~~~~~~~d~~~---~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~--~-~~~~--~v~V~~~~~~~~i~a 135 (466) +...+|. .......+.+. +++. . .+.......++..+++++.+... + .+.. ++...+.++.+++++ T Consensus 89 ~~~~~g~~~~~~~~~~~~~lg~iv~~-~----~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a 163 (397) T PRK06996 89 QRGHFGRTLIDRDDHDVPALGYVVRY-G----SLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQGARTLRA 163 (397) T ss_pred ECCCCCCEECCHHHCCCCCCCCCCCH-H----HHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEEEE T ss_conf 05776621126544288522354437-9----999999999974898798344514577636745899605998659981 Q ss_pred EEECCCCCCCC Q ss_conf 00004676652 Q gi|254781053|r 136 KNIVIATGSEA 146 (466) Q Consensus 136 d~iviATGs~p 146 (466) +.+|-|=|++. T Consensus 164 ~llVgaDG~~S 174 (397) T PRK06996 164 RIAVQAEGGLF 174 (397) T ss_pred CEEEECCCCCH T ss_conf 89999599981 No 328 >PRK08948 consensus Probab=97.04 E-value=7.8e-05 Score=53.70 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=67.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCC---------EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC- Q ss_conf 31999989866899999999879---9399993799715---------0251366737098999999999999866755- Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYG---------GTCLNIGCIPSKALLHASEMYSHIAKEAGDL- 69 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~G---------GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~- 69 (466) |||+||||||+|++.|+.+++++ .+|++||+..+-- ..+++. .|+.++....++..+......+ T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~---~s~~~L~~lGvw~~l~~~~~pi~ 77 (392) T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAA---GTCQQLARIGVWSALADCATAIT 77 (392) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCCHHHHHHCCCCC T ss_conf 949999958999999999986167998499982788754457888843457569---99999998799477785066300 Q ss_pred CEEC------CCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCC Q ss_conf 8164------7753289--------9999999999998777778764004310110011--100-222102357521123 Q gi|254781053|r 70 GINI------ASCHLDL--------KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEET 132 (466) Q Consensus 70 g~~~------~~~~~d~--------~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~ 132 (466) .+.. ....++. ..+++. ..+.+.+.+ ...+..+|+++.+.. .+. +...+.+..+++ ++ T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~~~lg~iv~~-~~l~~~L~~---~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g-~~ 152 (392) T PRK08948 78 HVHVSDRGHAGFVTLAAEDYGVAALGYVVEL-HDVGQRLFA---LLRKAPGVTLHCPARVANVARTQESVTVTLDNG-ET 152 (392) T ss_pred EEEEEECCCCCEEECCHHHCCCCCCHHHHHH-HHHHHHHHH---HHHHCCCCEEECCCEEEEEEECCCCEEEEECCC-CE T ss_conf 7898407877625437666088531127879-999999999---997589987855876899885588279997899-89 Q ss_pred CCCEEECCCCCCCC Q ss_conf 22100004676652 Q gi|254781053|r 133 IEAKNIVIATGSEA 146 (466) Q Consensus 133 i~ad~iviATGs~p 146 (466) ++++.+|-|-|++. T Consensus 153 ~~a~llVgaDG~~S 166 (392) T PRK08948 153 LQGKLLVAADGSHS 166 (392) T ss_pred EEECEEEEECCCCH T ss_conf 98378999189973 No 329 >PRK13977 myosin-cross-reactive antigen; Provisional Probab=96.97 E-value=0.0008 Score=46.32 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=40.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC--CCCEEE--EEEECCCCCCC---EEEEEEECCCCEEE Q ss_conf 2211222222222222232200234420146--872169--99721332110---00002320453121 Q gi|254781053|r 215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK--GKAQVV--YRSTDDEPINI---EADAVLVAAGRRPY 276 (466) Q Consensus 215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~--~~~~~g~~~~i---~~D~vl~a~G~~Pn 276 (466) +.+...+.+.|+++||+++++++|+.++-.. +...++ ....+|+..++ +-|.|++..|..-. T Consensus 226 eSii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~vt~i~~~~~g~~~~i~l~~~DlVfvTnGS~t~ 294 (577) T PRK13977 226 ESLVLPLIKYLEEHGVDFEYGTKVTDIDFDITGGKKTATAIHLTDDGKEESIDLTEDDLVFVTNGSMTE 294 (577) T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCEEEEECCCCCC T ss_conf 479999999999879879779989998985389976899999981896677761888889997886544 No 330 >PRK08013 hypothetical protein; Provisional Probab=96.91 E-value=0.00012 Score=52.24 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=34.3 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222232200234420146872169997213321100000232045312103 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+|+++.+++++++...++...+++. ++ .++.++.|+-|-|....+. T Consensus 125 ~~v~~~~~~~v~~i~~~~~~~~v~l~--~g--~~i~a~lvVgADG~~S~vR 171 (400) T PRK08013 125 SDITLLAPAELQQVAWGENEAFLTLK--DG--SMLTARLVIGADGANSWLR 171 (400) T ss_pred CCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH T ss_conf 98299868668998716971599947--99--8997428999788761323 No 331 >TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae.. Probab=96.90 E-value=0.0013 Score=44.81 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=29.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) .|.|||||-||-.||+++|+.|.+|.|.|-.+ T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP 33 (444) T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRP 33 (444) T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCC T ss_conf 36897188534689999984897279975387 No 332 >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Probab=96.90 E-value=0.00091 Score=45.91 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=33.3 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 1999989866899999999879939999379971502 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) +|.|||+|.+|++||..|+++ ++|+|+|.+..+||- T Consensus 10 ~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447) T COG2907 10 KIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447) T ss_pred CEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCC T ss_conf 168972562014457753235-524788606624675 No 333 >pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=96.89 E-value=0.0032 Score=41.98 Aligned_cols=32 Identities=41% Similarity=0.616 Sum_probs=30.3 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 99998986689999999987993999937997 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT 36 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~ 36 (466) |+|||||+.|+..|..++++|.+|+|||+.+. T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~ 33 (82) T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDR 33 (82) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 99999889999999999863927899812573 No 334 >KOG1298 consensus Probab=96.88 E-value=0.0014 Score=44.59 Aligned_cols=33 Identities=39% Similarity=0.506 Sum_probs=31.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 319999898668999999998799399993799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) +||+|||+|-+|-+.|..|++.|.||.+||++- T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509) T KOG1298 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCC T ss_conf 447998886227899999850785799996345 No 335 >PRK07608 hypothetical protein; Provisional Probab=96.84 E-value=0.00014 Score=51.94 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=36.0 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+.+.+++.+.-..++.++++++..++++.+++. ++ +++.+|.|+-|-|....+. T Consensus 117 ~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~--~g--~~i~a~llVgADG~~S~vR 171 (389) T PRK07608 117 ALDAALRFQGNLTWFDARAQGLDVTPDAATLTLS--DG--QVLEADLVVGADGAHSWVR 171 (389) T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEC--CC--CEEEEEEEEEECCCCHHHH T ss_conf 9999986189869988788899972991799988--99--8999658999669976888 No 336 >KOG2614 consensus Probab=96.83 E-value=0.0022 Score=43.13 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=35.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCEEEEEE Q ss_conf 933199998986689999999987993999937997--15025136 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT--YGGTCLNI 44 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~--~GGtC~~~ 44 (466) |+=+|+|+|||.+|+++|+-+.+.|.+|.+.|+.+. .+|+-+|- T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L 46 (420) T KOG2614 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINL 46 (420) T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE T ss_conf 9974899888389899999998758748998621465558841121 No 337 >PTZ00306 NADH-dependent fumarate reductase; Provisional Probab=96.81 E-value=0.00028 Score=49.62 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=14.0 Q ss_pred CCCCCCCCCEEECCCCCCC Q ss_conf 5211232210000467665 Q gi|254781053|r 127 SSSEETIEAKNIVIATGSE 145 (466) Q Consensus 127 ~~~~~~i~ad~iviATGs~ 145 (466) ++...++.++.+|+|||.- T Consensus 601 eG~~~tI~AkaVVLATGGF 619 (1167) T PTZ00306 601 SGQVMDLLADAVILATGGF 619 (1167) T ss_pred CCCEEEEECCEEEEECCCC T ss_conf 8854998347799968887 No 338 >TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Probab=96.74 E-value=0.00019 Score=50.85 Aligned_cols=53 Identities=13% Similarity=0.254 Sum_probs=36.3 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+.+.+.+. .++++.+++.++..++++.+++.+ |+ +..+|.|+-|-|....+. T Consensus 110 ~L~~~~~~~--~~~~~~~v~~v~~~~~~v~v~f~d--G~--~~~aDlVVGADGi~S~vR 162 (414) T TIGR03219 110 ALLKHLPEG--IASFGKRATQIEEQAEEVQVLFTD--GT--EYRCDLLIGADGIKSALR 162 (414) T ss_pred HHHHHCCCC--EEEECCEEEEEEEECCEEEEEECC--CC--EEECCEEEECCCCCHHHH T ss_conf 998547666--779698999999958927999879--98--872268997476423678 No 339 >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] Probab=96.72 E-value=0.00036 Score=48.85 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=61.3 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC---CCCCC---------CCCCCCCCC-CCCCCCCCHHHHH Q ss_conf 3332101234454332013220122011100001112212---22211---------222222222-2222322002344 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM---DKEIA---------AHCLKIMSK-QGMNFQLNSKVSS 240 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~---d~~~~---------~~~~~~l~~-~gV~i~~~~~v~~ 240 (466) -++++|||||..|++.|--++.+|.+|+|+++.+.+.+++ +.-+. ...+....+ .+|++++.++|++ T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622) T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCHHHCCCHHHHHCCCCCEEEEEEEEEEE T ss_conf 05359986848989999999975980899941786450477652307875532321330233312588614654224653 Q ss_pred HHCCCCCCEEEEEEEC Q ss_conf 2014687216999721 Q gi|254781053|r 241 VKKVKGKAQVVYRSTD 256 (466) Q Consensus 241 i~~~~~~~~v~~~~~~ 256 (466) ++..-+..+|.++... T Consensus 204 v~G~vGnF~vki~kkp 219 (622) T COG1148 204 VSGSVGNFTVKIEKKP 219 (622) T ss_pred ECCCCCCEEEEEECCC T ss_conf 0354353478873065 No 340 >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] Probab=96.69 E-value=0.00034 Score=49.03 Aligned_cols=97 Identities=24% Similarity=0.315 Sum_probs=58.9 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC------------CCCC-----CCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 332101234454332013220122011100001112------------2122-----22112222222222222322002 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL------------NGMD-----KEIAAHCLKIMSKQGMNFQLNSK 237 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll------------~~~d-----~~~~~~~~~~l~~~gV~i~~~~~ 237 (466) -.++|||+|+.|+=.|-+++|.+.+++|+.-.+.+- |+++ +++.+...+..+.-++++.. .. T Consensus 4 ~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305) T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE-EE T ss_conf 28899895889999999998758985699947875886344333357679867775089999999777634708888-99 Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 3442014687216999721332110000023204531210 Q gi|254781053|r 238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +.+++..++ ...++..++ +++++.|++|+|..+.- T Consensus 83 v~~v~~~~~--~F~v~t~~~---~~~ak~vIiAtG~~~~~ 117 (305) T COG0492 83 VEKVELEGG--PFKVKTDKG---TYEAKAVIIATGAGARK 117 (305) T ss_pred EEEEEECCC--EEEEEECCC---EEEEEEEEECCCCCCCC T ss_conf 899860686--099994797---49865699961776567 No 341 >pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent. Probab=96.68 E-value=0.0026 Score=42.57 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=58.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEE-EECCCCC-CC Q ss_conf 211222222222222232200234420146872169997213321100000232045312103678400-0012676-42 Q gi|254781053|r 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEE-IGINIDH-RG 293 (466) Q Consensus 216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~gi~~~~-~G 293 (466) .+++.+.+...++||+... ..|+++...+++....+...+| .++++|..|=|+|++.-. +++ .+.+..+ +. T Consensus 158 k~~~~Lr~~a~~~GV~~i~-~~V~~v~~~~~G~I~sl~l~~G--~~i~aDlfIDCTGF~~lL----i~~~l~~~~~s~s~ 230 (457) T pfam04820 158 LYARFLRRNAEARGVTRVE-GKVVDVQLDADGFVTSLRLEDG--REVEADLFIDCSGFRGLL----IEQALKTGYEDWSD 230 (457) T ss_pred HHHHHHHHHHHHCCCEEEE-EEEEEEEECCCCCEEEEEECCC--CEEEEEEEEECCCCCCCC----CCCCCCCCCCCHHH T ss_conf 9999999988857988998-4787999889996789996789--888764899778741100----00135998515756 Q ss_pred CCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCE Q ss_conf 23337763330268487024333543443000123201 Q gi|254781053|r 294 CIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAV 331 (466) Q Consensus 294 ~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~a 331 (466) .+.+|.-+-...|.- |-. .|-...+|+..|..= T Consensus 231 ~L~~d~Ava~~~~~~----~~~-~pyT~atA~~~GW~W 263 (457) T pfam04820 231 WLPCDRALAVQCESV----GPP-EPYTRATAHDAGWRW 263 (457) T ss_pred CCCCCCEEEEECCCC----CCC-CCCEEEEECCCCEEE T ss_conf 065673256635767----899-750355640487368 No 342 >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] Probab=96.67 E-value=0.00035 Score=48.97 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=23.7 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCC Q ss_conf 3321012344543320132201220-1110000111 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTI 209 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~l 209 (466) .+++|||+|.-|+=.|..|.+.|.. +.++|+++++ T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443) T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 548998987889999999997599867999705766 No 343 >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below .4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process. Probab=96.66 E-value=0.0032 Score=41.95 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=78.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CC----EEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEE Q ss_conf 933199998986689999999987993999937997---15----02513667370989999999999998-66755816 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT---YG----GTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGIN 72 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~---~G----GtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~ 72 (466) ||=-|+|||||||||-..-=|.+.|-..+|+|+... +| |. +-.|.+ .|+.-+..-.++.+ -...-|++ T Consensus 1 MkTqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~dYVlgRIRAGv-LE~g~v---~LL~~agv~~Rm~~eG~~H~G~~ 76 (393) T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRDYVLGRIRAGV-LEQGTV---DLLREAGVDERMDREGLVHEGIE 76 (393) T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCH-HHHHHH---HHHHHHHHHHHHHHCCCCCCCEE T ss_conf 95179997577357899999986698589972357223433210123-578999---99987223223453587325654 Q ss_pred C----CCCCCCHHHHHH------H-HHHHHHHHHH-----HHHHHHHCCCEEEEEEEEEECCCC---CCCCCCCCCCCCC Q ss_conf 4----775328999999------9-9999998777-----778764004310110011100222---1023575211232 Q gi|254781053|r 73 I----ASCHLDLKKMMS------Y-KKSIVESNTQ-----GINFLLKKNKIITYHGSARIVSNN---KILVKGSSSEETI 133 (466) Q Consensus 73 ~----~~~~~d~~~~~~------~-~~~~v~~~~~-----~~~~~~~~~~V~~~~g~a~~~~~~---~v~V~~~~~~~~i 133 (466) + ...++|+.+.-. + ..++.+.+-+ +....++...|++-+-. .+.. +|+...++...++ T Consensus 77 ia~~g~~~riDl~~~tGG~~V~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V~~HD~~---~~~P~gc~VT~~~dG~~~~~ 153 (393) T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLYEAREQAGLKTVYDADDVRLHDLA---GDRPEGCHVTFERDGEEHRI 153 (393) T ss_pred EECCCCEEECCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCCEEEEEECCCEEEE T ss_conf 501782420007660589789997661577889999986389556411432112656---78889525877787917776 Q ss_pred CCEEECCCCC----CCCCCCCCCC-CCCCCEEEEEECCCC Q ss_conf 2100004676----6524445766-532100245305741 Q gi|254781053|r 134 EAKNIVIATG----SEASGLPGMS-IDFDEQVIVSSTGAL 168 (466) Q Consensus 134 ~ad~iviATG----s~p~~iP~~~-~~~~~~~~~t~~~~~ 168 (466) ..|+|.=|=| ||. .||... ..++..+-+-+=+++ T Consensus 154 dCDfIAGCDGFHGvSR~-siP~~~~k~fErVYPFGWLGiL 192 (393) T TIGR02360 154 DCDFIAGCDGFHGVSRA-SIPAEVLKEFERVYPFGWLGIL 192 (393) T ss_pred EEEEEECCCCCCCCCCC-CCCHHHHHCCCCCCCCCCHHHH T ss_conf 40267527888686544-5651241112450676200120 No 344 >KOG2853 consensus Probab=96.65 E-value=0.0023 Score=42.97 Aligned_cols=62 Identities=26% Similarity=0.527 Sum_probs=41.5 Q ss_pred CCEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCC---------CCEEEEEECCCCHH--HHHHHHHHHHHHHHH Q ss_conf 319999898668999999998----7993999937997---------15025136673709--899999999999986 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEKT---------YGGTCLNIGCIPSK--ALLHASEMYSHIAKE 65 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~~---------~GGtC~~~GCiPsK--~l~~~a~~~~~~~~~ 65 (466) -||+|||||-.|.+.|.+|++ .|.+|+++|++.. .||.|-.. .+|-. .-+.+++..++..++ T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF-SlpEnIqmSLF~a~Flr~a~eh 163 (509) T KOG2853 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF-SLPENIQMSLFTAEFLRNAREH 163 (509) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEEC-CCCHHHHHHHHHHHHHHHHHHH T ss_conf 6789988886522658999887643794399996267521001145554443321-4610011356799999877776 No 345 >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Probab=96.63 E-value=0.00024 Score=50.18 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=35.9 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222232200234420146872169997213321100000232045312103 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..+|+++.+.+++.++..++...+++. ++ .++.++.|+-|-|....+. T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~v~~~--~g--~~i~a~llVgaDG~~S~vR 171 (405) T PRK08850 124 QDNVTLLMPARCQSIAVGESEAWLTLD--NG--QALTAKLVVGADGANSWVR 171 (405) T ss_pred CCCCEEECCCEEEEEEECCCCEEEEEC--CC--CEEEEEEEEEECCCCHHHH T ss_conf 899199737535567617971599977--99--8887508999169873789 No 346 >KOG1276 consensus Probab=96.61 E-value=0.0033 Score=41.83 Aligned_cols=37 Identities=41% Similarity=0.592 Sum_probs=33.3 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCE--EEEECCCCCCE Q ss_conf 31999989866899999999879939--99937997150 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKV--AIIEKEKTYGG 39 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V--~lIE~~~~~GG 39 (466) -+|+|+|||.+|+++|.+|++++-++ +|+|+.+.+|| T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491) T KOG1276 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC T ss_conf 669998885368899999985489955999842786665 No 347 >KOG2665 consensus Probab=96.59 E-value=0.0017 Score=43.99 Aligned_cols=231 Identities=22% Similarity=0.256 Sum_probs=109.9 Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC Q ss_conf 33199998986689999999987--9939999379971502--5136673709899999999999986675581647753 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGT--CLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH 77 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGt--C~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~ 77 (466) +||+||||||..|++.|.++.-+ +++|+++|+++.++-. --|.|.| .-|+-....+ T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgVi--------------------HaGIYY~P~S 107 (453) T KOG2665 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVI--------------------HAGIYYKPGS 107 (453) T ss_pred CCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEE--------------------EEEEEECCCC T ss_conf 55479988843222556777631787257754000102155125666505--------------------6434417766 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC--- Q ss_conf 28999999999999987777787640043101100111002221023575211232210000467665244457665--- Q gi|254781053|r 78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSI--- 154 (466) Q Consensus 78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~--- 154 (466) +. +++- ++-..-.++. .+...+-. =+..++|+||++.. +|-++. T Consensus 108 LK-AklC------V~G~~LlY~y----------------c~e~~Ipy--------Kk~GKLIVAt~~~E--iprLd~L~~ 154 (453) T KOG2665 108 LK-AKLC------VEGRELLYEY----------------CDEKKIPY--------KKTGKLIVATESEE--IPRLDALMH 154 (453) T ss_pred CC-HHHH------HCCHHHHHHH----------------HHHCCCCH--------HHCCEEEEEECHHH--CCHHHHHHH T ss_conf 00-0110------3429999998----------------52407973--------45063899717211--503899997 Q ss_pred -----CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -----321002453057411111133321012344543320132201220111000011122122221122222222222 Q gi|254781053|r 155 -----DFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG 229 (466) Q Consensus 155 -----~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~g 229 (466) ...+-..+...++++++..-+ +..+-+--+.-+++-+ .+ ...+.+.++..| T Consensus 155 ~g~qN~v~glrmieg~ei~~~EP~cr---------------gvkAl~sPhtGIvD~~-~v--------~ls~~edF~~~g 210 (453) T KOG2665 155 RGTQNGVPGLRMIEGSEIMEMEPYCR---------------GVKALLSPHTGIVDWG-SV--------TLSFGEDFDFMG 210 (453) T ss_pred HHHHCCCCCEEEECCCHHHHCCHHHH---------------HHHHHCCCCCCEEEHH-HH--------HHHHHHHHHHHC T ss_conf 65225999706531211333173554---------------4465448876604357-89--------999988898745 Q ss_pred CCCCCCHHHHHHHCCCC---CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE--- Q ss_conf 22322002344201468---721699972133211000002320453121036784000012676422333776333--- Q gi|254781053|r 230 MNFQLNSKVSSVKKVKG---KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT--- 303 (466) Q Consensus 230 V~i~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T--- 303 (466) =++++|-+++.+..... +.-+++.++. .+++.+..++-++|.... .+ .+..|+++|++=..--.+|++- T Consensus 211 g~i~~n~~l~g~~~n~~~~~~Ypivv~ngk--~ee~r~~~~vtc~gl~sd--r~-aa~sgc~~dPriVpfrG~ylll~~e 285 (453) T KOG2665 211 GRIYTNFRLQGIAQNKEATFSYPIVVLNGK--GEEKRTKNVVTCAGLQSD--RC-AALSGCELDPRIVPFRGEYLLLKPE 285 (453) T ss_pred CCCCCCCEECCCHHCCCCCCCCCEEEECCC--CCEEEEEEEEEECCCCHH--HH-HHHHCCCCCCEEEECCCHHHHCCHH T ss_conf 412156410120103678888866994585--522577678873363376--78-8974899887041045315531767 Q ss_pred ----ECCCCEEECCC Q ss_conf ----02684870243 Q gi|254781053|r 304 ----SISTIYAIGDV 314 (466) Q Consensus 304 ----s~p~IyA~GDv 314 (466) -.-|||-+=|- T Consensus 286 k~h~vk~niyPvpd~ 300 (453) T KOG2665 286 KLHLVKGNIYPVPDP 300 (453) T ss_pred HHCCCCCCEEECCCC T ss_conf 762426745447888 No 348 >TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm. Probab=96.55 E-value=0.00039 Score=48.64 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=80.8 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC------CCCC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCH Q ss_conf 3210123445433201322012201110000------1112--------2122-----2211222222222222232200 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHS------GTIL--------NGMD-----KEIAAHCLKIMSKQGMNFQLNS 236 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~------~~ll--------~~~d-----~~~~~~~~~~l~~~gV~i~~~~ 236 (466) +++|||+||-|+=-|-+-+|.+.+.-||++. .+|. |+|. +++.+.+.++..+-|.++.++. T Consensus 2 DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~ 81 (321) T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGE 81 (321) T ss_pred CEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC T ss_conf 28998478678889999887467278983577774555333220651368688876628899999999987067366267 Q ss_pred HHHHHHCCCC-----CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCC----CCC--CC-EE Q ss_conf 2344201468-----7216999721332110000023204531210367840000-1267642233----377--63-33 Q gi|254781053|r 237 KVSSVKKVKG-----KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIE----IGG--QF-QT 303 (466) Q Consensus 237 ~v~~i~~~~~-----~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~----vd~--~~-~T 303 (466) .|.+|+..+. -..+. .+ .+++++.||+|+|-.|. .|++++ | =++-.|| |- +|. .+ + T Consensus 82 ~v~~v~~~~~~yE~~~F~~~----~~--~~y~a~avIiAtGa~~r--~lg~~k-GE~ef~GrG-VSyCA~CDGA~~ffk- 150 (321) T TIGR01292 82 EVIRVDKSDRAYESDPFKVK----TG--KEYTAKAVIIATGAEAR--KLGIPK-GEDEFLGRG-VSYCATCDGASPFFK- 150 (321) T ss_pred EEEEEECCCCCCCCCEEEEE----EC--CEEEEEEEEEECCCHHH--HCCCCC-CHHHHCCCC-EEEEEHHCCCCHHHC- T ss_conf 05686337884366103897----17--56886589991387154--237886-645532686-667223105401205- Q ss_pred ECCCCEEECC Q ss_conf 0268487024 Q gi|254781053|r 304 SISTIYAIGD 313 (466) Q Consensus 304 s~p~IyA~GD 313 (466) ...|.++|. T Consensus 151 -~K~V~VvGG 159 (321) T TIGR01292 151 -NKEVAVVGG 159 (321) T ss_pred -CCEEEEECC T ss_conf -988999879 No 349 >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Probab=96.50 E-value=0.00039 Score=48.58 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=23.8 Q ss_pred EECCCCEEECCCCCCC-CCC----CEECCCCCCEEECCCCC Q ss_conf 3026848702433354-344----30001232012011122 Q gi|254781053|r 303 TSISTIYAIGDVVRGP-MLA----HKAEDEGIAVAEIISGQ 338 (466) Q Consensus 303 Ts~p~IyA~GDv~g~~-~l~----~~A~~~g~~aa~~i~~~ 338 (466) +..+|+..+||++|.. +++ +.|+..|.+|++.+... T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aae~i~~~ 306 (396) T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396) T ss_pred EECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 05289899984666748865577399999999999999864 No 350 >PRK09897 hypothetical protein; Provisional Probab=96.47 E-value=0.00065 Score=46.98 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=45.0 Q ss_pred HHHHCCCCH-HHHHH--CCCCC-C-CCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEE Q ss_conf 322012201-11000--01112-2-122221122222222222--22322002344201468721699972133211000 Q gi|254781053|r 192 VWTRLGSCV-KIIEH--SGTIL-N-GMDKEIAAHCLKIMSKQG--MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEA 264 (466) Q Consensus 192 ~~~~lG~~V-tli~~--~~~ll-~-~~d~~~~~~~~~~l~~~g--V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~ 264 (466) .++++|.+- ++=+| -||+| + .|-.++... .+.-++.| |+++.+++|+.+....+++.+...+ +.....+ T Consensus 80 ~L~~~~id~~~l~~rqflPRiLlGeYl~~QF~~L-ve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~---~~~~~~F 155 (535) T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRL-VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ---DLPSETF 155 (535) T ss_pred HHHHCCCCHHHCCCCCEEHHHHHHHHHHHHHHHH-HHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECC---CCCCCCC T ss_conf 8987199832264101004888889999999999-99998659669997576667644369955998337---8876432 Q ss_pred EEEEECCCCE-EEE Q ss_conf 0023204531-210 Q gi|254781053|r 265 DAVLVAAGRR-PYT 277 (466) Q Consensus 265 D~vl~a~G~~-Pn~ 277 (466) |.+++|||-. |.. T Consensus 156 D~vVIaTGH~WP~~ 169 (535) T PRK09897 156 DLAVIATGHVWPDE 169 (535) T ss_pred EEEEEECCCCCCCC T ss_conf 07998079879987 No 351 >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=96.47 E-value=0.0002 Score=50.71 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=35.3 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222232200234420146872169997213321100000232045312103 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+|+++.+.++++++..++...+++. ++ .++.+|.|+-|-|..-.+. T Consensus 124 ~~i~~~~~~~v~~~~~~~~~~~v~l~--~g--~~i~a~llIgADG~~S~vR 170 (384) T PRK08849 124 PNLTLLCPEKLKDLEFSAEGNRVTLE--SG--AEIEAKWVIGADGANSQVR 170 (384) T ss_pred CCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEEEECCCHHHH T ss_conf 99199838778898853881499978--99--9998547999207864667 No 352 >KOG1238 consensus Probab=96.44 E-value=0.0035 Score=41.64 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=31.1 Q ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCC Q ss_conf 33199998986689999999987-993999937997 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQL-KNKVAIIEKEKT 36 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~-G~~V~lIE~~~~ 36 (466) .||.||||||.||-..|.+|++- ..+|+|+|+++. T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623) T KOG1238 57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623) T ss_pred CCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 799899898731278887651388734999956899 No 353 >pfam00996 GDI GDP dissociation inhibitor. Probab=96.42 E-value=0.006 Score=39.95 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=35.8 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3319999898668999999998799399993799715025 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) .|||||+|-|..=--.|..|++.|+||+-+|+++.+||.+ T Consensus 4 eyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~~ 43 (439) T pfam00996 4 EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGES 43 (439) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 5029997998799999999973699899977998778630 No 354 >PRK10157 putative oxidoreductase FixC; Provisional Probab=96.40 E-value=0.00043 Score=48.30 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=33.7 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 222222222223220023442014687216999721332110000023204531210 Q gi|254781053|r 221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +.+..++.|+++++++.|+++...++.+ +-++ .+|+ ++.++.||.|-|....+ T Consensus 114 La~~Ae~aGA~i~~g~~V~~li~~~GrV-vGV~-~~G~--~i~A~vVI~AdGv~s~l 166 (428) T PRK10157 114 LMEQAEEAGAQLITGIRVDNLVQRDGKV-VGVE-ADGD--VIEAKTVILADGVNSIL 166 (428) T ss_pred HHHHHHHCCCEEECCCEEEEEEEECCEE-EEEE-CCCC--EEEEEEEEEECCCHHHH T ss_conf 9999998098898685810014348979-9997-5895--89871799944721777 No 355 >pfam01134 GIDA Glucose inhibited division protein A. Probab=96.28 E-value=0.0008 Score=46.33 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=24.9 Q ss_pred CCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC Q ss_conf 776333-0268487024333543443000123201201112 Q gi|254781053|r 298 GGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG 337 (466) Q Consensus 298 d~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 337 (466) ...||| .+||+|.+|.++|..-. -.|.-||.+|+-|... T Consensus 346 ~~tLe~k~~~~Lf~AGQInGt~GY-eEAaaqGliAGiNaa~ 385 (391) T pfam01134 346 LPTLETKKIPGLFFAGQINGTEGY-EEAAAQGLLAGINAAR 385 (391) T ss_pred CCHHHHCCCCCEEECCCCCCCHHH-HHHHHHHHHHHHHHHH T ss_conf 303540546987876622477079-9999999999999999 No 356 >TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process. Probab=96.20 E-value=0.0073 Score=39.35 Aligned_cols=38 Identities=37% Similarity=0.577 Sum_probs=34.5 Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEE Q ss_conf 199998986689999999987--99399993799715025 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTC 41 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC 41 (466) |++|||||-||---|++|.++ ..+|.|||....+||+= T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNH 40 (392) T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNH 40 (392) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC T ss_conf 9788727335789999875259872899984377668875 No 357 >TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway.. Probab=96.18 E-value=0.0073 Score=39.33 Aligned_cols=40 Identities=30% Similarity=0.490 Sum_probs=36.3 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 9999898668999999998799399993799715025136 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI 44 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~ 44 (466) |+|-|+|-||++||.++..+|+..+++|+.+.+||....| T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW 41 (454) T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAW 41 (454) T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEE T ss_conf 5772274556778878763589626863210035502332 No 358 >KOG3855 consensus Probab=96.16 E-value=0.0063 Score=39.83 Aligned_cols=33 Identities=39% Similarity=0.680 Sum_probs=28.2 Q ss_pred CCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECC Q ss_conf 33199998986689999999987----9939999379 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKE 34 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~ 34 (466) +|||||+||||.|.+-|..+... .+||.|+|.. T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481) T KOG3855 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481) T ss_pred CCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECC T ss_conf 0778998884477899998624985000014677424 No 359 >pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Probab=96.14 E-value=0.0061 Score=39.92 Aligned_cols=52 Identities=29% Similarity=0.272 Sum_probs=38.7 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 12222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ...+...++..|.+|++|++|++|...++++.|... +| +++++|.||+|+.. T Consensus 207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~~--~G--~~~~ad~VI~a~p~ 258 (444) T pfam01593 207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTV--DG--EVIEADAVIVTVPL 258 (444) T ss_pred HHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEEC--CC--CEEECCEEEECCCH T ss_conf 999999974159869958977899996996999988--99--76644868985798 No 360 >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration. Probab=96.07 E-value=0.008 Score=39.06 Aligned_cols=31 Identities=48% Similarity=0.657 Sum_probs=28.7 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEEC Q ss_conf 31999989866899999999879--93999937 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEK 33 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~ 33 (466) -|++|||+|-|||-||+.+++.+ ++|+||.| T Consensus 4 ~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSK 36 (585) T TIGR01176 4 ADIAVIGAGGAGLRAAIAAAEANPHLDVALISK 36 (585) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 236788378446899999984089853789851 No 361 >TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum.. Probab=96.04 E-value=0.01 Score=38.33 Aligned_cols=36 Identities=39% Similarity=0.579 Sum_probs=34.2 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 999989866899999999879939999379971502 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT 40 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt 40 (466) |.|||+|-||+++|..+...|++|-+.|....+||- T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GGk 37 (474) T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGGK 37 (474) T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 578725677899999997389727885243323752 No 362 >TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.. Probab=96.03 E-value=0.0064 Score=39.75 Aligned_cols=32 Identities=41% Similarity=0.612 Sum_probs=27.8 Q ss_pred CEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC Q ss_conf 19999898668999999998----799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~ 35 (466) ||+|||||.+|-=||.+|+. .|+||+|+||.. T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~ 36 (651) T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAA 36 (651) T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 947871785520278999987406883799961146 No 363 >KOG2960 consensus Probab=95.94 E-value=0.0025 Score=42.69 Aligned_cols=41 Identities=41% Similarity=0.494 Sum_probs=29.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEE Q ss_conf 3199998986689999999987--9939999379971502513 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLN 43 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~ 43 (466) -||||+|+|.||++||...++. .++|++||..-..||-... T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328) T KOG2960 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328) T ss_pred CCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC T ss_conf 4569987786654146663036998469999700369974340 No 364 >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Probab=95.93 E-value=0.002 Score=43.38 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=22.1 Q ss_pred CCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC Q ss_conf 22232200234420146872169997213321100000232045 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) ..++.++++|+++...++..+++..++ .....+|.|++++- T Consensus 117 dL~V~~~~rVt~v~~~~~~W~l~~~~g---~~~~~~d~vvla~P 157 (331) T COG3380 117 DLTVVLETRVTEVARTDNDWTLHTDDG---TRHTQFDDVVLAIP 157 (331) T ss_pred CCHHHHHHHHHHHEECCCEEEEEECCC---CCCCCCCEEEEECC T ss_conf 504344223143123387168984688---76455343899368 No 365 >KOG1335 consensus Probab=95.78 E-value=0.019 Score=36.38 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 99998986689999999987993999937997150 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) ++|||+|.-|+.-+.--.++|.+|++||..+.+|| T Consensus 214 ~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506) T KOG1335 214 LTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506) T ss_pred EEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCC T ss_conf 79974745665546688763771799984434446 No 366 >PRK10015 hypothetical protein; Provisional Probab=95.73 E-value=0.0012 Score=45.07 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=34.8 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 222222222223220023442014687216999721332110000023204531210 Q gi|254781053|r 221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +.+..++.|+++++++.|+++..+++. .+-++.++ ..+.++.||.|-|....+ T Consensus 114 La~~Ae~aGa~i~~g~~v~~l~~e~g~-V~GV~tg~---~~l~A~vVI~AdGvns~l 166 (429) T PRK10015 114 LMEQAEQAGAQFIPGVRVDALVREGNK-VTGVQAGD---DILEANVVILADGVNSML 166 (429) T ss_pred HHHHHHHCCCEEECCCEEEEEEEECCE-EEEEECCC---CEEEEEEEEEECCCCHHH T ss_conf 999999759999779589999962998-99998798---268865899815622799 No 367 >PRK12409 D-amino acid dehydrogenase small subunit; Provisional Probab=95.71 E-value=0.0016 Score=44.15 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=34.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 93319999898668999999998799399993799715 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G 38 (466) |+ ||+|||||..|+++|.+|+++|.+|+|||+++..| T Consensus 1 m~-~V~VIGaGivGlstA~~La~~G~~VtviDr~~~~~ 37 (410) T PRK12409 1 MS-HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA 37 (410) T ss_pred CC-CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99-59998983999999999997899189996989987 No 368 >PRK07208 hypothetical protein; Provisional Probab=95.68 E-value=0.0018 Score=43.82 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=41.7 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE-EEEEECCCCCCCEEEEEEECCCC Q ss_conf 1122222222222223220023442014687216-99972133211000002320453 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQV-VYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v-~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +-+.+.+.+.+.|+++++|++|++|...++.... .....++...++.+|.|+.++-. T Consensus 214 l~e~l~~~l~~~G~~i~~n~~V~~I~~~~~~~~~~~~~~~~~~~~~~~~d~vIsT~Pl 271 (474) T PRK07208 214 LWEAAAEKLEAEGVKVVLNAKVTGLHHDGGRIVSVVAEDQDGNETTATGDQVISSMPL 271 (474) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEEECCCCEEEEECCEEEECCCH T ss_conf 9999999998729878669878999834988999999842796369988879998859 No 369 >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Probab=95.67 E-value=0.019 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=31.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+ ++|+|+|--|...|..|.+.|++|++||+++ T Consensus 1 M~--IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~ 33 (455) T PRK09496 1 MK--IIILGAGQVGGTLAERLVGENNDVTVIDTDE 33 (455) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 97--9999988899999999986899799998999 No 370 >pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases. Probab=95.57 E-value=0.024 Score=35.64 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=28.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) .|+|||+|-+|+.||..+..+|.+|.++|.+. T Consensus 22 ~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~ 53 (150) T pfam01262 22 KVVVIGGGVVGLGAAATAKGLGAPVTILDVRP 53 (150) T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 79998987899999999986799899972999 No 371 >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=95.50 E-value=0.0019 Score=43.53 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=28.5 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222232200234420146872169997213321100000232045312103 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..|++..+..+..+...++...+.+ ++ .++.++.++.|-|....+. T Consensus 118 ~~i~~~~~~~~~~~~~~~~~~~~~~---~~--~~i~~~llIgaDG~~S~vR 163 (374) T PRK06617 118 PLITLIDNNQYQEVISHNDYSIIKF---DD--KQIKCNLLIICDGANSKVR 163 (374) T ss_pred CCCEEECCCCEEEEECCCCCEEEEC---CC--CEEEEEEEEEECCCCHHHH T ss_conf 9948975751146652788269963---89--6785358999579851668 No 372 >KOG0029 consensus Probab=95.50 E-value=0.0033 Score=41.81 Aligned_cols=40 Identities=35% Similarity=0.501 Sum_probs=28.9 Q ss_pred CCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCC Q ss_conf 22232200234420146872-169997213321100000232045 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) |.+++++..+.+|.-.+++. .+++.+.++ .++|.|+++.- T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~----~~~d~vvvt~p 268 (501) T KOG0029 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDG----YEADAVVVTVP 268 (501) T ss_pred CCCEEECEEEEEEEEECCCCEEEEEECCCE----EEEEEEEEEEC T ss_conf 863352216688897158834799977984----58407999705 No 373 >TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process. Probab=95.49 E-value=0.0042 Score=41.11 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=34.2 Q ss_pred CCCCCCCCCCCCC-CCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCCCCEEEEEEECCCCEE Q ss_conf 2112222222222-2223220023442014-6872169997213321100000232045312 Q gi|254781053|r 216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEADAVLVAAGRRP 275 (466) Q Consensus 216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P 275 (466) ++.+.+++.+.+. |+.++. .++.++... .....+.. .+| .+|.|-.|+-|.|..| T Consensus 92 ~L~~~l~~~~~~~sG~~~~~-~ka~~~~~~~~~~~~v~~--~~g--~~i~Ar~V~Da~G~~~ 148 (419) T TIGR01790 92 QLHEELLQKCPEGSGVLWLE-AKAIKVEADAVSLSLVEC--AGG--QRIQARLVIDARGFKP 148 (419) T ss_pred HHHHHHHHHHHCCCCEEEEH-HHHHHHHHHHCCCCEEEC--CCC--EEEEEEEEEECCCCCC T ss_conf 99999998620037613301-356666544055111442--897--3784007883257776 No 374 >PRK11883 protoporphyrinogen oxidase; Reviewed Probab=95.47 E-value=0.0024 Score=42.85 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=33.5 Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 222222322002344201468721699972133211000002320453 Q gi|254781053|r 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 226 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ++.|++|++|+.|++|+..++++.++. .++ .++++|.|++|+.- T Consensus 230 ~~lg~~i~l~~~V~~I~~~~~~~~v~~--~~g--~~~~aD~VV~a~p~ 273 (452) T PRK11883 230 EKLPATIHKSTSVTKIDKSGDGYEITL--SNG--GEITADAVIVAVPH 273 (452) T ss_pred HHCCCEEEECCEEEEEEEECCEEEEEE--CCC--CEEECCEEEECCCH T ss_conf 865997996888889999399899998--899--69995989989898 No 375 >TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. Probab=95.46 E-value=0.011 Score=38.18 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=24.2 Q ss_pred CCCCCCCCCCCHHHHHHHCCCC----CCEEEEEEEC------CCCCCCEEEEEEECCCCEEEE Q ss_conf 2222222322002344201468----7216999721------332110000023204531210 Q gi|254781053|r 225 MSKQGMNFQLNSKVSSVKKVKG----KAQVVYRSTD------DEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 225 l~~~gV~i~~~~~v~~i~~~~~----~~~v~~~~~~------g~~~~i~~D~vl~a~G~~Pn~ 277 (466) -.+.|-+++.+ .+++++...+ ...+++++.+ ++..++++|.||=|-|=..+| T Consensus 106 A~kaGAe~~~g-~f~~~~~d~~GWds~~~~~~~~~~G~k~ag~~~~~v~~~~VIGADGA~S~v 167 (408) T TIGR02023 106 AQKAGAELIEG-LFKKLERDEDGWDSRVTLQYREKDGKKEAGEEKKSVEADVVIGADGANSKV 167 (408) T ss_pred HHHHHHHHHHH-HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHH T ss_conf 87621476656-755201567777552589987677751256777737898876044788658 No 376 >pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Probab=95.37 E-value=0.0031 Score=42.00 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=20.5 Q ss_pred CCCCCCCCCCEE------ECCCCEEECCCCCC Q ss_conf 422333776333------02684870243335 Q gi|254781053|r 292 RGCIEIGGQFQT------SISTIYAIGDVVRG 317 (466) Q Consensus 292 ~G~I~vd~~~~T------s~p~IyA~GDv~g~ 317 (466) .|.|.||+++|+ .+||.||+|.|+++ T Consensus 357 ~GGl~id~~~qVld~~g~~IpGLYAaGe~a~g 388 (401) T pfam00890 357 MGGVRTDENGRVLDADGQPIPGLYAAGEVACG 388 (401) T ss_pred CCCEEECCCCEEECCCCCEECCEEEECCCCCC T ss_conf 45817981763878999891898871167656 No 377 >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] Probab=95.29 E-value=0.0085 Score=38.87 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=24.3 Q ss_pred CCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 76333-02684870243335434430001232012011 Q gi|254781053|r 299 GQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 299 ~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) ..++| -++|.|-||-++|.--. ..|..||.+|.-|. T Consensus 352 ~tLEtK~I~GLf~AGQINGTtGY-EEAAaQGliAGiNA 388 (621) T COG0445 352 PTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINA 388 (621) T ss_pred CCHHHCEECCEEECCCCCCCCHH-HHHHHHHHHHHHHH T ss_conf 41322264462775513687336-77876248888999 No 378 >PRK07233 hypothetical protein; Provisional Probab=95.28 E-value=0.0031 Score=42.00 Aligned_cols=37 Identities=32% Similarity=0.647 Sum_probs=35.4 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 9999898668999999998799399993799715025 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) |||||||.+||+||.+|++.|.+|+|+|+++.+||-| T Consensus 2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~ 38 (430) T PRK07233 2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLA 38 (430) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE T ss_conf 8999977899999999983999889995899895997 No 379 >PRK00711 D-amino acid dehydrogenase small subunit; Validated Probab=95.27 E-value=0.0027 Score=42.51 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=32.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 93319999898668999999998799399993799715 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG 38 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G 38 (466) || |+|||||..|+++|.+|+++|.+|+|||+++..| T Consensus 1 m~--VvIIGaGi~G~stA~~La~~G~~V~vler~~~~~ 36 (416) T PRK00711 1 MR--VVVLGSGVVGVTSAWYLARAGHEVTVIDRQPGPA 36 (416) T ss_pred CE--EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 97--9999944999999999996899689996999985 No 380 >KOG2614 consensus Probab=95.24 E-value=0.0051 Score=40.47 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=14.7 Q ss_pred CCEEECCCCCCC--CC---CCEECCCCCCEEECC Q ss_conf 848702433354--34---430001232012011 Q gi|254781053|r 307 TIYAIGDVVRGP--ML---AHKAEDEGIAVAEII 335 (466) Q Consensus 307 ~IyA~GDv~g~~--~l---~~~A~~~g~~aa~~i 335 (466) +|=.+||....+ .+ ..-|...+.+.++-+ T Consensus 289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L 322 (420) T KOG2614 289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECL 322 (420) T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 1899634313368766655432478899999999 No 381 >PRK06185 hypothetical protein; Provisional Probab=95.21 E-value=0.0023 Score=43.02 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=38.1 Q ss_pred CCCCCCCCCHHHHHHHCCCCCCE-EEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 22222322002344201468721-69997213321100000232045312103 Q gi|254781053|r 227 KQGMNFQLNSKVSSVKKVKGKAQ-VVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 227 ~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) ..+++++++++++++..+++.+. +.+...++ +.++.+|.|+-|-|+...+. T Consensus 121 ~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg-~~~i~adlvVGADG~~S~VR 172 (409) T PRK06185 121 YPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDG-ELEIRADLTVGADGRHSRVR 172 (409) T ss_pred CCCCEEEECCEEEEEEEECCCEEEEEEECCCC-CEEEEEEEEEECCCCCCHHH T ss_conf 89959996888899999599089999984898-58999729997389984789 No 382 >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Probab=95.14 E-value=0.037 Score=34.19 Aligned_cols=33 Identities=21% Similarity=0.510 Sum_probs=30.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+ ++|||+|.-|++.|..|.+.|..|++||+++ T Consensus 1 m~--iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225) T COG0569 1 MK--IIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 98--9998985788999999987899089997688 No 383 >PRK11445 putative oxidoreductase; Provisional Probab=95.12 E-value=0.0038 Score=41.41 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=33.1 Q ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222232200234420146872169997213321100000232045312103 Q gi|254781053|r 228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) .+..++.+..+.+++..+++..+++.. +++..++.++.|+-|-|....+. T Consensus 111 ~~~~~~~~~~~~~i~~~~~g~~v~~~~-~g~~~~~~a~~iIGADGanS~Vr 160 (348) T PRK11445 111 ASVEVYHNSLCRKIWREDDGYHVIFRA-DGWEQHITARYLVGADGANSMVR 160 (348) T ss_pred HCCCEEEEEEEEEEEECCCEEEEEEEE-CCEEEEEEECEEEECCCCCCHHH T ss_conf 287389714899999839807999971-89078987378998989775887 No 384 >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process. Probab=95.12 E-value=0.033 Score=34.61 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=22.1 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCC--CCEEEEEEECCCCEE Q ss_conf 222222222222232200234420146872169997213321--100000232045312 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPI--NIEADAVLVAAGRRP 275 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~--~i~~D~vl~a~G~~P 275 (466) +...+.|++.|++++.+ +-+=+ ....+.|.-.++.++.. ++.++.+|+|+|-+| T Consensus 105 ~lY~~~L~~AGv~Ll~G-rA~~v--d~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrp 160 (478) T TIGR01424 105 GLYKKLLAKAGVELLEG-RAELV--DPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRP 160 (478) T ss_pred HHHHHHHHHHCEEEEEC-CEEEE--CCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCC T ss_conf 88899888533044304-33783--6815797410378788316787759999877878 No 385 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=95.05 E-value=0.0031 Score=42.06 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=30.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || |.|||+|.-|...|..|++.|.+|+++.+++ T Consensus 1 Mk--I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~ 33 (307) T PRK06522 1 MK--IAILGAGAIGGLFGARLAQAGHDVTLVARGA 33 (307) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 98--9999914999999999984899889997888 No 386 >PRK12921 2-dehydropantoate 2-reductase; Provisional Probab=94.99 E-value=0.0034 Score=41.75 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=29.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9331999989866899999999879939999379 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) || |+|+|+|.-|...|..|++.|.+|+++-+. T Consensus 1 Mk--I~I~GaGAiG~~~a~~L~~~g~~V~lv~r~ 32 (306) T PRK12921 1 MK--IAVVGAGAVGGTFGARLLEAGRDVTFLGRS 32 (306) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 98--999992499999999998369988999700 No 387 >pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Probab=94.97 E-value=0.044 Score=33.66 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=31.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || |.|||.|.-|+..|..+++.|.+|+-+|.++ T Consensus 1 Mk--I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~ 33 (185) T pfam03721 1 MR--IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33 (185) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 97--9998978748999999994899399997998 No 388 >COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] Probab=94.95 E-value=0.046 Score=33.54 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=34.7 Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3319999898668999999998799399993799715025 Q gi|254781053|r 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) .|||+|.|-|.---..+..++..|++|+.||+++.+|++- T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434) T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434) T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 0018996266899999888622675179970787667533 No 389 >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] Probab=94.90 E-value=0.012 Score=37.81 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=28.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -+|||||-=|+.||..|.+.|.+|.+++-.+ T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~ 178 (793) T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP 178 (793) T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 5897551141678878874797348987336 No 390 >PRK07588 hypothetical protein; Provisional Probab=94.88 E-value=0.0044 Score=40.97 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 9331999989866899999999879939999379971 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) || |+|||||+||+++|..|++.|.+|+|+|+.+.+ T Consensus 1 mk--VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~ 35 (391) T PRK07588 1 MK--IAISGAGIAGATLAHWLQRTGHEPTLIERAPKL 35 (391) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 97--999993289999999998689998999038988 No 391 >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] Probab=94.85 E-value=0.034 Score=34.49 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.9 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 319999898668999999998799399993799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) --|-|||||-||-.||.+++++|.+|.|.|-.+ T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439) T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439) T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEECCC T ss_conf 725897565445199999987698379997045 No 392 >PRK08163 salicylate hydroxylase; Provisional Probab=94.84 E-value=0.005 Score=40.55 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=40.5 Q ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 2222222222-22232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQ-GMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+++. +|++++++++++++..++++.+++. +| .++++|.|+-|-|....+. T Consensus 113 ~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~vR 169 (396) T PRK08163 113 LSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQ--QG--NRWTGDALIGCDGVKSVVR 169 (396) T ss_pred HHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH T ss_conf 999999985698178709999999953997999988--99--8998769996488773688 No 393 >KOG4405 consensus Probab=94.84 E-value=0.035 Score=34.42 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=34.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 3199998986689999999987993999937997150 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG 39 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG 39 (466) |||||||-|.----.|..+++.|.+|+=+|+++.+|| T Consensus 9 fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547) T KOG4405 9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCC T ss_conf 4389981798489999986003770586068655577 No 394 >TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process. Probab=94.69 E-value=0.082 Score=31.71 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=27.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCCC-HHHHHHCC Q ss_conf 5741111113332101234454332013220-1220-11100001 Q gi|254781053|r 165 TGALSFSSVPKNLLVIGAGVIGLELGSVWTR-LGSC-VKIIEHSG 207 (466) Q Consensus 165 ~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~-lG~~-Vtli~~~~ 207 (466) +++++.+-..++++|.|+|+||+ ||-+-++ .|+. |-+.+.++ T Consensus 153 hTvL~~~~~G~~vlv~GaGPiGl-ma~AVAKa~GA~~Vi~~d~ne 196 (341) T TIGR00692 153 HTVLESDLAGEDVLVIGAGPIGL-MAVAVAKAAGARNVIVIDKNE 196 (341) T ss_pred HHHHCCCCCCCCEEEECCCHHHH-HHHHHHHHHCCCEEEEECCCH T ss_conf 46525776887189985774789-999998772784059965864 No 395 >pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Probab=94.63 E-value=0.0088 Score=38.77 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=32.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC Q ss_conf 3321012344543320132201220111000011122 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN 211 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~ 211 (466) -.++|||+|+.|+-.|..|++-|.||.++||+..+-. T Consensus 18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GG 54 (229) T pfam01946 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54 (229) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 6889988781799999999878985999964526888 No 396 >PTZ00188 adrenodoxin reductase; Provisional Probab=94.53 E-value=0.0037 Score=41.53 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=57.8 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HCCCCHHHHHHCCCCCCC--C-----CCC---CCCCCC Q ss_conf 53210024530574111111333210123445433201322-012201110000111221--2-----222---112222 Q gi|254781053|r 154 IDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWT-RLGSCVKIIEHSGTILNG--M-----DKE---IAAHCL 222 (466) Q Consensus 154 ~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~-~lG~~Vtli~~~~~ll~~--~-----d~~---~~~~~~ 222 (466) .++.++.++|+ +..|-|++|||+|+.|+=.|+.|- .-+.+|+++||.|-+... + +|+ +.+.+. T Consensus 25 ~~~~~~~~~~~------~~rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRyGVAPDHpevKnv~~~f~ 98 (506) T PTZ00188 25 LPFTGKCFLTN------EAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYRTFD 98 (506) T ss_pred CCHHHHHCCCC------CCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 33001000247------887657999888838999999996389977988826898874111046889856606899999 Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 222222222322002344201468721699972133211000002320453 Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +.+.+.+++++-|.++-+ + +++ ++..-.+|.|++|+|- T Consensus 99 ~~a~~p~~rF~GNV~vG~----D----itl-----~eL~~~YdAVVlA~GA 136 (506) T PTZ00188 99 LVFSSPNYRFFGNVHVGV----D----LKM-----EELRRHYNCVIFCCGA 136 (506) T ss_pred HHHCCCCEEEEECEEECC----C----CCH-----HHHHHHCCEEEEECCC T ss_conf 996589759994733489----8----899-----9998638999994797 No 397 >KOG1298 consensus Probab=94.48 E-value=0.017 Score=36.60 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=21.3 Q ss_pred CCCCCCCHHHHHHHCCCC-CCEEEEEEECCCCCCCEEEEEEECCCCEE Q ss_conf 222322002344201468-72169997213321100000232045312 Q gi|254781053|r 229 GMNFQLNSKVSSVKKVKG-KAQVVYRSTDDEPINIEADAVLVAAGRRP 275 (466) Q Consensus 229 gV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~i~~D~vl~a~G~~P 275 (466) +|++..+ +|.++.++++ -..|++++..+++.+..+-.-++|-|.-. T Consensus 162 NV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfS 208 (509) T KOG1298 162 NVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFS 208 (509) T ss_pred CEEEEEE-EHHHHHHCCCEEEEEEEECCCCCEEEEECCEEEEECCHHH T ss_conf 7088610-2787873168597589862788557873555899412568 No 398 >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=94.47 E-value=0.02 Score=36.15 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.5 Q ss_pred CCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECC Q ss_conf 42233377633302684870243335434430001 Q gi|254781053|r 292 RGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAED 326 (466) Q Consensus 292 ~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~ 326 (466) .|.|.||.+.||++||.||||.|+++. |-|++ T Consensus 404 MGGI~vD~~~~T~I~GLyAaGE~a~gv---HGANR 435 (638) T PRK07573 404 MGGLWVDYNLMSTIPGLFVIGEANFSD---HGANR 435 (638) T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCC---CCCCC T ss_conf 379668877655258718854347576---54212 No 399 >TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae.. Probab=94.46 E-value=0.012 Score=37.76 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=21.3 Q ss_pred CCEEEEC----CCCCCCCCCCCCCCEE-----ECCCCEEECCCCCC Q ss_conf 8400001----2676422333776333-----02684870243335 Q gi|254781053|r 281 GLEEIGI----NIDHRGCIEIGGQFQT-----SISTIYAIGDVVRG 317 (466) Q Consensus 281 ~Le~~gi----~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~ 317 (466) +|+++-+ -+..+=||.-+.-|.. +..++|++|-.+|. T Consensus 307 gLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGv 352 (444) T TIGR00137 307 GLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGV 352 (444) T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCC T ss_conf 8431478850743111112763565575304771331331400030 No 400 >KOG1439 consensus Probab=94.45 E-value=0.017 Score=36.65 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=34.4 Q ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 93--319999898668999999998799399993799715025 Q gi|254781053|r 1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) |. |||+|+|-|---...+..++..|++|+.||+++.+||+- T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440) T KOG1439 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440) T ss_pred CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCCCC T ss_conf 9875149997377364100000257695899970788777644 No 401 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=94.44 E-value=0.055 Score=32.93 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=30.4 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC Q ss_conf 133321012344543320132201220111000011 Q gi|254781053|r 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT 208 (466) Q Consensus 173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 208 (466) .|-+++|||+|..|+.-+..-.++|..|+.++.++. T Consensus 164 pPAkVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~ 199 (510) T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (510) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 885289974647779999999627978999658788 No 402 >TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Probab=94.44 E-value=0.007 Score=39.50 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=40.6 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC Q ss_conf 11222222222222232200234420146872169997213321100000232045 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) +.+.+.+.+++.|.+|++|+.|++|+..++++.++... ++ +++.+|.|++|+. T Consensus 210 ~~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~~-~g--~~~~ad~VI~a~p 262 (430) T TIGR03467 210 FPEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIRA-GG--ETLTADAVVLAVP 262 (430) T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEEC-CC--EEEECCEEEECCC T ss_conf 99999999996497677698368999979988999950-98--7997799998989 No 403 >pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway. Probab=94.43 E-value=0.0081 Score=39.00 Aligned_cols=31 Identities=23% Similarity=0.511 Sum_probs=27.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|+|+|.-|...|..|++.|.+|+++.+.+ T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150) T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150) T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999668999999999997799289997563 No 404 >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated Probab=94.41 E-value=0.0069 Score=39.54 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=25.6 Q ss_pred CCCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECC Q ss_conf 3776333-02684870243335434430001232012011 Q gi|254781053|r 297 IGGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEII 335 (466) Q Consensus 297 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 335 (466) .+..|+| .++|.|-||-++|.--. -.|..||.+|.-|. T Consensus 352 L~~tLEtK~i~gLf~AGQINGTTGY-EEAAaQGliAGINA 390 (621) T PRK05192 352 LKPTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINA 390 (621) T ss_pred HHHHHCCCCCCCEEECCCCCCCCHH-HHHHHCCHHHHHHH T ss_conf 3335331655987777766775078-99885467989999 No 405 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=94.38 E-value=0.075 Score=31.98 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=27.4 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC Q ss_conf 3210123445433201322012201110000111 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI 209 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l 209 (466) |++|+|+|.+|.=+|..|++.|.+||++.|+++. T Consensus 2 kI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~~ 35 (307) T PRK06522 2 KIAILGAGAIGGLFGARLAQAGHDVTLVARGATL 35 (307) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH T ss_conf 8999991499999999998489988999788889 No 406 >PRK06184 hypothetical protein; Provisional Probab=94.37 E-value=0.007 Score=39.48 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=43.7 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC Q ss_conf 222222222222232200234420146872169997213321100000232045312103 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK 278 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~ 278 (466) +.+.+.+.+.|+++++++++++++++++++.+++.+.++ .+++.+++++-|-|.+..+. T Consensus 116 ~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~-~~~i~a~ylVGaDGa~S~VR 174 (503) T PRK06184 116 EILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAG-EETVRARYLVGADGGRSFVR 174 (503) T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCC-CEEEEEEEEECCCCCCHHHH T ss_conf 999999986798699476688999819989999985997-18999877741577774668 No 407 >PRK08229 2-dehydropantoate 2-reductase; Provisional Probab=94.36 E-value=0.0068 Score=39.58 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9331999989866899999999879939999379 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) ||.-|+|||+|.-|...|..|++.|.+|++|.+. T Consensus 1 ~mmkI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341) T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECH T ss_conf 9477999896799999999998589987999567 No 408 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=94.36 E-value=0.0087 Score=38.78 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=35.4 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC Q ss_conf 1333210123445433201322012201110000111221222 Q gi|254781053|r 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDK 215 (466) Q Consensus 173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~ 215 (466) .|.+++|+|||.+|.|-|-+...+|.+||+++++..-|+..|. T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd 209 (371) T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD 209 (371) T ss_pred CCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHH T ss_conf 7760899877612406999972368706999527788764067 No 409 >TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport. Probab=94.29 E-value=0.024 Score=35.53 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=27.2 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999989866899999999879939999379 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) -+|+|||..-|.||=-|+..|..|++.=|. T Consensus 191 TLvVGasYVALECaGFL~~~g~dV~V~VRS 220 (513) T TIGR01438 191 TLVVGASYVALECAGFLAALGLDVTVLVRS 220 (513) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 578776142357788986339964999988 No 410 >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Probab=94.28 E-value=0.0089 Score=38.72 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=29.6 Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCC Q ss_conf 2222222322002344201468721699972-133211000002320453 Q gi|254781053|r 225 MSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGR 273 (466) Q Consensus 225 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~ 273 (466) -.+.|-.+...++|+++..+++...+.+++. .|++.++.++.|+.|+|- T Consensus 165 A~~~GA~i~ny~~V~~~~~~g~~~~v~~~d~~tg~~~~v~ak~VVNAtGp 214 (503) T PRK13369 165 AAERGATILTRTRCVSARREGGLWRLETRNSDTGETRTFRARALVNAAGP 214 (503) T ss_pred HHHCCCHHHHCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEEEEECCCC T ss_conf 99878523307368877862648999999878995899985389986672 No 411 >PRK12416 protoporphyrinogen oxidase; Provisional Probab=94.20 E-value=0.0079 Score=39.10 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=27.7 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC Q ss_conf 222222222222232200234420146872169997213321100000232045 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) +.+.+.|.+. .+..++.++.++..+++..+++. ++ .++++|.|++|+- T Consensus 230 ~aL~~~L~~~--~i~~~~~~~~i~~~~~~~~v~~~--~~--~~~~~d~VV~a~P 277 (466) T PRK12416 230 DRLEEVLTET--VVKKGAVTTAVSKQGDRYEISFA--NH--ESIQADYVVLAAP 277 (466) T ss_pred HHHHHHHCCC--EEECCCEEEEEEECCCCEEEEEC--CC--CEEEECEEEECCC T ss_conf 9999873535--47848558889876995899957--99--8787366997688 No 412 >TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline. Probab=94.16 E-value=0.04 Score=33.97 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=54.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-EEEEEEECC--CCCCCEEEEEEECCCCE--EE---ECCCC----CE Q ss_conf 211222222222222232200234420146872-169997213--32110000023204531--21---03678----40 Q gi|254781053|r 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKA-QVVYRSTDD--EPINIEADAVLVAAGRR--PY---TKGLG----LE 283 (466) Q Consensus 216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g--~~~~i~~D~vl~a~G~~--Pn---~~~l~----Le 283 (466) ..+.+|...+++.+++|.+.+-+++|.-++... .|++..++. .+.+-..--||++.|-. |. .+++| |. T Consensus 200 aaraYL~pA~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL~lSGiG~aehL~ 279 (540) T TIGR01810 200 AARAYLDPALKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLLQLSGIGDAEHLK 279 (540) T ss_pred HHHHHHHHHHCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHH T ss_conf 44666446640787200142222000330883799888228973300001244578833412135899762897179998 Q ss_pred EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC Q ss_conf 0001267642233377633302684870243335 Q gi|254781053|r 284 EIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG 317 (466) Q Consensus 284 ~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~ 317 (466) +.||++--+ .+=|-++|| .+=-+|.==.|..+ T Consensus 280 e~gI~~~~~-lPGVGeNl~-DHlE~Y~Q~~ck~P 311 (540) T TIGR01810 280 ELGIELKVE-LPGVGENLQ-DHLEVYLQYACKKP 311 (540) T ss_pred HCCCCEEEC-CCCCCCCHH-HHHHHHHHHHCCCC T ss_conf 558960652-787876334-35642322422887 No 413 >PRK06126 hypothetical protein; Provisional Probab=94.13 E-value=0.009 Score=38.69 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=23.0 Q ss_pred CCEEEEEEEE--EEC-CCCCCC--CCC-CCC-CCCCCCEEECCCCCCCC Q ss_conf 4310110011--100-222102--357-521-12322100004676652 Q gi|254781053|r 105 NKIITYHGSA--RIV-SNNKIL--VKG-SSS-EETIEAKNIVIATGSEA 146 (466) Q Consensus 105 ~~V~~~~g~a--~~~-~~~~v~--V~~-~~~-~~~i~ad~iviATGs~p 146 (466) .++++..|+- .|. +...|. +.. +++ .++++++++|=|=|++. T Consensus 140 ~gv~v~~g~~~~~~~qd~~gV~~~~~~~~~g~~~~i~A~ylVGaDGarS 188 (545) T PRK06126 140 PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545) T ss_pred CCCEEECCCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC T ss_conf 9988980778999998389469999989999489998779997478873 No 414 >PRK12839 hypothetical protein; Provisional Probab=94.11 E-value=0.011 Score=38.06 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=35.9 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEEEEECCCCCCCEE-EEEEECCCC Q ss_conf 1122222222222223220023442014687-21-699972133211000-002320453 Q gi|254781053|r 217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVYRSTDDEPINIEA-DAVLVAAGR 273 (466) Q Consensus 217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~~~~~g~~~~i~~-D~vl~a~G~ 273 (466) +...+.+..++.||++++++.++++..++++ +. |.....+++ ..+.+ ..||+|+|= T Consensus 218 l~~~l~~~~~~~Gv~i~~~t~~~~Li~d~~G~V~GV~~~~~~g~-~~i~a~kgVVLATGG 276 (574) T PRK12839 218 LTGRLLTSADDLGVDLRVSTSAVSLNTDNAGRVTGVKVQTPDGL-VDFEATRGVVLATGG 276 (574) T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEEECCCE-EEEEECCEEEECCCC T ss_conf 99999999998298699666147987617984888999817951-999832358990388 No 415 >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] Probab=94.09 E-value=0.016 Score=36.83 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=30.0 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC Q ss_conf 332101234454332013220122011100001112 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL 210 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll 210 (466) ..++|+|+|+.|+-.|.++++-|.+|++++|+-.+- T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G 66 (262) T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG 66 (262) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCC T ss_conf 267998768505789999986796499997301468 No 416 >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Probab=94.06 E-value=0.0034 Score=41.74 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=12.9 Q ss_pred CHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 98899999999998789878996 Q gi|254781053|r 417 SAGEMIHEAAVLMEFGGSSEDLA 439 (466) Q Consensus 417 ~a~eli~~~a~ai~~~~t~~~l~ 439 (466) +..|.+.+....-+.|..+=|.. T Consensus 641 t~edsv~la~~l~~~GvD~IdvS 663 (770) T PRK08255 641 TPDDAVEIARAFKAAGADMIDVS 663 (770) T ss_pred CHHHHHHHHHHHHHCCCCEEEEC T ss_conf 99999999999997499899957 No 417 >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below .4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process. Probab=94.05 E-value=0.02 Score=36.14 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=29.2 Q ss_pred CCCCCCCCCCCCCHHHHHH---HCC-CCCCEEEEEEECCCCCCCEEEEEEECCCCEE Q ss_conf 2222222223220023442---014-6872169997213321100000232045312 Q gi|254781053|r 223 KIMSKQGMNFQLNSKVSSV---KKV-KGKAQVVYRSTDDEPINIEADAVLVAAGRRP 275 (466) Q Consensus 223 ~~l~~~gV~i~~~~~v~~i---~~~-~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P 275 (466) +.-++.|-++.+++.-.++ +.+ +.+..|++.. +|+..+|+||.|-=|-|+.. T Consensus 111 ~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~-dG~~~~~dCDfIAGCDGFHG 166 (393) T TIGR02360 111 EAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFER-DGEEHRIDCDFIAGCDGFHG 166 (393) T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE-CCCEEEEEEEEEECCCCCCC T ss_conf 999863895564114321126567888952587778-79177764026752788868 No 418 >pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes. Probab=94.05 E-value=0.0094 Score=38.54 Aligned_cols=35 Identities=40% Similarity=0.629 Sum_probs=32.2 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 31999989866899999999879939999379971 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY 37 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~ 37 (466) =||+|||||++|+++|..|++.|.+|+|+|+.+.+ T Consensus 2 ~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~ 36 (349) T pfam01494 2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATT 36 (349) T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 97899992889999999998779989999289998 No 419 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=93.97 E-value=0.059 Score=32.75 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=13.2 Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 8986689999999987993999937 Q gi|254781053|r 9 GGGPAGYACAIKAAQLKNKVAIIEK 33 (466) Q Consensus 9 G~G~AG~~aA~~~~~~G~~V~lIE~ 33 (466) |--|++. ..+.+.|++|.+=+. T Consensus 17 altP~~V---~~l~~~GheVlVe~g 38 (371) T COG0686 17 ALTPASV---RELVNHGHEVLVETG 38 (371) T ss_pred CCCHHHH---HHHHHCCCEEEEECC T ss_conf 3575769---999737958999658 No 420 >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype.. Probab=93.92 E-value=0.015 Score=37.13 Aligned_cols=187 Identities=18% Similarity=0.284 Sum_probs=91.2 Q ss_pred CCCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCC--------------CEEEE-EEECCCCCCCEEEEEEECCC-----CE Q ss_conf 2112222222222-2223220023442014687--------------21699-97213321100000232045-----31 Q gi|254781053|r 216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKVKGK--------------AQVVY-RSTDDEPINIEADAVLVAAG-----RR 274 (466) Q Consensus 216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--------------~~v~~-~~~~g~~~~i~~D~vl~a~G-----~~ 274 (466) ++.+.+.+.|.+. .|+++...++.+|+.+.+. ..+++ .++.-.+.++.++.|+.|-| .. T Consensus 119 ~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~ 198 (425) T TIGR01984 119 DLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDAN 198 (425) T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHH T ss_conf 99999999986256651125753211210578630005666655103578883088756405553088985586331356 Q ss_pred EEECCCCCEEEECCCCCCCCCCCC-CCCEEEC-CCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCC--CCCC--C Q ss_conf 210367840000126764223337-7633302-6848702433354344300012320120111-222222--2333--3 Q gi|254781053|r 275 PYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI-STIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHV--NYGI--I 347 (466) Q Consensus 275 Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~-p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~--~~~~--i 347 (466) -... +..+|. ...- +|-||+. -||= +..-+++ .|.+.+. ..+..+ ..+. . T Consensus 199 S~~r----~~~~i~------~~~~R~y~QtAlian~~------------~~~pH~~-~A~ERFt~~GPlALLP~~d~q~~ 255 (425) T TIGR01984 199 SKVR----ELLSIA------TEEHRDYEQTALIANVR------------VEQPHQG-CAFERFTPHGPLALLPLKDNQYR 255 (425) T ss_pred HHHH----HHCCCC------EEEECCCCEEEEEEECC------------CCCCCCC-CEEEEECCCCCEEECCCCCCCCC T ss_conf 7889----963898------17860620033012310------------0357576-06844477778023467899972 Q ss_pred CCCEEEHH-HHHH--HHHCHHHH-HH---CCCCEEEEEEEECCCCHHHHCCCCCEE-EEEEEECC--CCEEEEEEEECCC Q ss_conf 22100014-4551--00147888-62---346658999960447034418898338-99999789--9869999998299 Q gi|254781053|r 348 PSVVYTHP-EVAS--IGKTEEQL-KC---EKKSYKVGKFPFSANGRARSMNSIDGF-VKILANEK--SDRVEGVHIIGGS 417 (466) Q Consensus 348 p~~vft~p-eia~--vGlte~~a-~~---~~~~~~v~~~~~~~~~ra~~~~~~~g~-~kli~~~~--~~~ilG~~~vg~~ 417 (466) -+.|||-| +-|. .+|++++- .+ ....+.-+++ ...++-..| +++++.++ .+|+ -++| + T Consensus 256 ~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~--------~~~G~r~~yPL~l~~a~~~v~~R~---vliG-N 323 (425) T TIGR01984 256 LSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKI--------TQVGERKAYPLKLVIAEEQVSHRV---VLIG-N 323 (425) T ss_pred EEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCCHHHHHHHHHCCCCCE---EEEE-C T ss_conf 388971897899998668988999998651222542057--------432751004366786210146727---9986-5 Q ss_pred HHHHHHHHH-HHHHCCCCHHHHH Q ss_conf 889999999-9998789878996 Q gi|254781053|r 418 AGEMIHEAA-VLMEFGGSSEDLA 439 (466) Q Consensus 418 a~eli~~~a-~ai~~~~t~~~l~ 439 (466) |+..+|++| .-. ++.++|.. T Consensus 324 AAqTlHPIAGQGf--NLGlRDv~ 344 (425) T TIGR01984 324 AAQTLHPIAGQGF--NLGLRDVL 344 (425) T ss_pred CHHHHCCHHHHCC--CCHHHHHH T ss_conf 1333301455301--63289999 No 421 >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Probab=93.91 E-value=0.1 Score=30.97 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=31.0 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || |.|||.|.-|+..|..+++.|.+|+-+|.++ T Consensus 1 Mk--I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~ 33 (411) T TIGR03026 1 MK--IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 97--9998978779999999994899489998999 No 422 >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.. Probab=93.89 E-value=0.062 Score=32.60 Aligned_cols=28 Identities=43% Similarity=0.508 Sum_probs=26.1 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9999898668999999998799399993 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIE 32 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE 32 (466) |+|||+|-||.+||..+++.|..|..+- T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~ 28 (620) T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFS 28 (620) T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9685565347899999986488512544 No 423 >KOG4716 consensus Probab=93.84 E-value=0.15 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=14.3 Q ss_pred EEEEEECCCCCCCEEEEEEECCCCEEEE Q ss_conf 6999721332110000023204531210 Q gi|254781053|r 250 VVYRSTDDEPINIEADAVLVAAGRRPYT 277 (466) Q Consensus 250 v~~~~~~g~~~~i~~D~vl~a~G~~Pn~ 277 (466) +..++.+++...+.++.+++|+|-+|.- T Consensus 148 I~at~~~gk~~~~ta~~fvIatG~RPrY 175 (503) T KOG4716 148 IKATNKKGKERFLTAENFVIATGLRPRY 175 (503) T ss_pred EEEECCCCCEEEEECCEEEEEECCCCCC T ss_conf 8985477845786145389972687789 No 424 >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed Probab=93.82 E-value=0.01 Score=38.32 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=26.5 Q ss_pred CCCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECCC Q ss_conf 3776333-026848702433354344300012320120111 Q gi|254781053|r 297 IGGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS 336 (466) Q Consensus 297 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 336 (466) .+..||| .+||+|-+|-++|.--. -.|..||.+|+-|.+ T Consensus 323 L~~tLe~K~~~~Lf~AGQInGt~GY-eEAAAqGliAGiNAa 362 (434) T PRK05335 323 LDPTLQLKSRPNLFFAGQITGVEGY-VESAASGLLAGINAA 362 (434) T ss_pred CCCCEEECCCCCCEECCCCCCCHHH-HHHHHHHHHHHHHHH T ss_conf 4844163487982771133674188-999998899999999 No 425 >pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis. Probab=93.82 E-value=0.12 Score=30.44 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=32.5 Q ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEECCCCCCEEE Q ss_conf 199998986689999999987----99399993799715025 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEKTYGGTC 41 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~~~GGtC 41 (466) +.-|||+|.|+|+||..|-+- |.++.++|+.+..||.| T Consensus 4 ~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GGs~ 45 (500) T pfam06100 4 SAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGSL 45 (500) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC T ss_conf 599989768999988988642787864138985588898654 No 426 >KOG2844 consensus Probab=93.80 E-value=0.088 Score=31.48 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEE-EECCC Q ss_conf 3199998986689999999987993999-93799 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAI-IEKEK 35 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~l-IE~~~ 35 (466) =|+||||||.+|.++|..++++|.+.++ .|+.. T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ 73 (856) T KOG2844 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSR 73 (856) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 5579985785047899999971465247876411 No 427 >TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown.. Probab=93.76 E-value=0.069 Score=32.24 Aligned_cols=32 Identities=41% Similarity=0.699 Sum_probs=29.4 Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 31999989866899999999879939999379 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) ||++|||+|.||..+|...++.|.++.++-.. T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~ 32 (630) T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLN 32 (630) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEEC T ss_conf 90688617620035677765417513455404 No 428 >PRK08132 hypothetical protein; Provisional Probab=93.72 E-value=0.012 Score=37.87 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=25.0 Q ss_pred CCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 4310110011--100-222--10235752112322100004676652 Q gi|254781053|r 105 NKIITYHGSA--RIV-SNN--KILVKGSSSEETIEAKNIVIATGSEA 146 (466) Q Consensus 105 ~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~ad~iviATGs~p 146 (466) .++++..|+- .|. ++. ++.+...++.++++++++|=|=|++. T Consensus 139 ~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVGaDGarS 185 (549) T PRK08132 139 PNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIACDGARS 185 (549) T ss_pred CCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC T ss_conf 99789957689999984994699998799868999889986377877 No 429 >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Probab=93.72 E-value=0.012 Score=37.87 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=22.9 Q ss_pred CCEEEEEEEE--EEC-CCCCCCC--CC--CCCCCCCCCEEECCCCCCCC Q ss_conf 4310110011--100-2221023--57--52112322100004676652 Q gi|254781053|r 105 NKIITYHGSA--RIV-SNNKILV--KG--SSSEETIEAKNIVIATGSEA 146 (466) Q Consensus 105 ~~V~~~~g~a--~~~-~~~~v~V--~~--~~~~~~i~ad~iviATGs~p 146 (466) .++++..|+- .|. +.+.|.+ .. ++..++++++++|=|=|++. T Consensus 128 ~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ira~ylVGaDGa~S 176 (554) T PRK06183 128 PHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVRARYVVGCDGANS 176 (554) T ss_pred CCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC T ss_conf 9989993889999997188427999977999579999768997178870 No 430 >PRK08267 short chain dehydrogenase; Provisional Probab=93.65 E-value=0.33 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.6 Q ss_pred CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 9331999989866-8999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) || =++|-||+.+ |.+.|..+++.|.+|++.++++ T Consensus 1 MK-~vlITGassGIG~a~A~~~a~~G~~V~~~~r~~ 35 (258) T PRK08267 1 MK-SIFITGAASGIGRATARLFAARGWRVGAYDINE 35 (258) T ss_pred CC-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99-899907226899999999998799999998889 No 431 >COG3349 Uncharacterized conserved protein [Function unknown] Probab=93.65 E-value=0.013 Score=37.51 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=20.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 211222222222222232200234420146 Q gi|254781053|r 216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVK 245 (466) Q Consensus 216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~ 245 (466) -+-..+.+.+++.|.+++....+.++.-.. T Consensus 216 ~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~ 245 (485) T COG3349 216 VLLQPWTEYIPERGRKVHADYPVKELDLDG 245 (485) T ss_pred EEEEHHHHHCCCCCCEEECCCEEEEEECCC T ss_conf 465003331302485310364445543145 No 432 >PRK08229 2-dehydropantoate 2-reductase; Provisional Probab=93.59 E-value=0.12 Score=30.36 Aligned_cols=31 Identities=35% Similarity=0.556 Sum_probs=17.7 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC Q ss_conf 3210123445433201322012201110000 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHS 206 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~ 206 (466) |++|+|+|.+|.=+|..|++.|.+|+++.|. T Consensus 4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341) T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECH T ss_conf 7999896799999999998589987999567 No 433 >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle. Probab=93.51 E-value=0.04 Score=33.95 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=71.1 Q ss_pred CCCCCCCCCCC-CCCCCCCHHHHHHHCCC-CCCEEEEEEE-C-CCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-- Q ss_conf 12222222222-22232200234420146-8721699972-1-33211000002320453121036784000012676-- Q gi|254781053|r 218 AAHCLKIMSKQ-GMNFQLNSKVSSVKKVK-GKAQVVYRST-D-DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-- 291 (466) Q Consensus 218 ~~~~~~~l~~~-gV~i~~~~~v~~i~~~~-~~~~v~~~~~-~-g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-- 291 (466) .+-+.++++.+ |+++++|.+|+.+..+. +...|++++. + |+.++|.+-.|++..|=-. .+ | |.+.||.-.+ T Consensus 181 t~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG~A-L~-l-Lq~SGIpevKGF 257 (487) T TIGR01320 181 TKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGGGA-LP-L-LQKSGIPEVKGF 257 (487) T ss_pred HHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCH-HH-H-HHHCCCCCCCCC T ss_conf 99999997028981676385000110105885378841220888762676677897157416-88-9-886679876653 Q ss_pred CCCCCCCCCCEEECCC--------CEEECCCCCCCCCC Q ss_conf 4223337763330268--------48702433354344 Q gi|254781053|r 292 RGCIEIGGQFQTSIST--------IYAIGDVVRGPMLA 321 (466) Q Consensus 292 ~G~I~vd~~~~Ts~p~--------IyA~GDv~g~~~l~ 321 (466) -||++--.++|.++|- ||---.| |-||+. T Consensus 258 aGFPvSG~fLR~~Npe~~~qH~AKVYG~A~v-GAPPmS 294 (487) T TIGR01320 258 AGFPVSGLFLRCSNPELVEQHRAKVYGQASV-GAPPMS 294 (487) T ss_pred CCCCCCCEECCCCCHHHHHHHCCCCCCCCCC-CCCCCC T ss_conf 3657555000178879998505621577887-648887 No 434 >PRK08274 tricarballylate dehydrogenase; Validated Probab=93.43 E-value=0.011 Score=38.08 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=19.3 Q ss_pred CCCCCCCCCCE------EECCCCEEECCCCCC Q ss_conf 42233377633------302684870243335 Q gi|254781053|r 292 RGCIEIGGQFQ------TSISTIYAIGDVVRG 317 (466) Q Consensus 292 ~G~I~vd~~~~------Ts~p~IyA~GDv~g~ 317 (466) .|.+.+|+++| +.+||.||+|.|+++ T Consensus 394 ~GGl~id~~~qVl~~~g~pI~GLYAaGe~~~G 425 (456) T PRK08274 394 YLGLKVDETARVRFADGRPSPNLFAAGEMMAG 425 (456) T ss_pred CCCCEECCCCCEECCCCCEECCEEECCCCCCC T ss_conf 67825998886578999883998878134646 No 435 >PRK11259 solA N-methyltryptophan oxidase; Provisional Probab=93.38 E-value=0.013 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=38.8 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 12222222222222322002344201468721699972133211000002320453 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) ...+.+..++.|++++.++.|++++..++++. ++..+| ++.+|.|++|+|- T Consensus 152 ~~al~~~a~~~G~~i~~~~~V~~i~~~~~~v~--V~T~~G---~i~A~~VV~AaGa 202 (377) T PRK11259 152 IKAHLRLAREAGAELLFNEPVTAIEHDDDGVT--VTTADG---TYSAKKLVVSAGT 202 (377) T ss_pred HHHHHHHHHHCCCCEEECEEEEEEEECCCEEE--EEECCC---EEECCEEEECCCH T ss_conf 99999999974996581348886787499899--980894---7997979997565 No 436 >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] Probab=93.35 E-value=0.14 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || +.|||.|..|++.|.-+++.|++|+.+|.++ T Consensus 1 Mk--I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414) T COG1004 1 MK--ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414) T ss_pred CC--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 91--5898885568878999987098489995788 No 437 >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Probab=93.34 E-value=0.015 Score=37.12 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.7 Q ss_pred CCCCCCCCCCEE-ECCCCEEECCCCC Q ss_conf 422333776333-0268487024333 Q gi|254781053|r 292 RGCIEIGGQFQT-SISTIYAIGDVVR 316 (466) Q Consensus 292 ~G~I~vd~~~~T-s~p~IyA~GDv~g 316 (466) .|.|.||...+| ++||.||||+|++ T Consensus 346 mGGi~id~~~~~t~I~GLyAaGE~ag 371 (566) T PRK06452 346 MGGIDVDITGRNPDLIGLFAAGEAAC 371 (566) T ss_pred CCCEEECCCCCCCCCCCCEECCCCCC T ss_conf 68824676888677763243367551 No 438 >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=93.29 E-value=0.017 Score=36.71 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=28.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|-.|+++|..|.+.|.+|++.|..+ T Consensus 12 i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450) T PRK02472 12 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999778999999999998869899984886 No 439 >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=93.27 E-value=0.16 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=28.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|..|+++|..|.++|.+|.+.|..+ T Consensus 10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~ 40 (501) T PRK02006 10 VLVLGLGESGLAMARWCARHGCRLRVADTRE 40 (501) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9998336889999999997898499998999 No 440 >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=93.26 E-value=0.018 Score=36.58 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=28.8 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|..|+++|..|.+.|.+|.++|..+ T Consensus 17 v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 47 (481) T PRK01438 17 VVVAGLGVSGFPAADALHELGASVTVVADGD 47 (481) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999575889999999996799899997998 No 441 >PRK05708 2-dehydropantoate 2-reductase; Provisional Probab=93.19 E-value=0.15 Score=29.77 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || +.|||+|.-|-..|..|++.|.+|+++.+++ T Consensus 3 Mk--I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~ 35 (305) T PRK05708 3 MT--WHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCEEEEEECH T ss_conf 88--9998823999999999984899739999478 No 442 >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Probab=92.98 E-value=0.018 Score=36.54 Aligned_cols=41 Identities=39% Similarity=0.592 Sum_probs=38.1 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 93319999898668999999998799399993799715025 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC 41 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC 41 (466) |+|||||||||++||+||..|+++|++|+++|++...||-| T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487) T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCE T ss_conf 97629998988789999999996899799996378887724 No 443 >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process. Probab=92.86 E-value=0.021 Score=35.93 Aligned_cols=89 Identities=17% Similarity=0.313 Sum_probs=42.8 Q ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCCCCEEE Q ss_conf 3220122011100001112212222112222222222-----2223220023442014-687216999721332110000 Q gi|254781053|r 192 VWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-----GMNFQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEAD 265 (466) Q Consensus 192 ~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-----gV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~i~~D 265 (466) -|.++|.+|+|.+-... -+|++.. +-+.|..+ -++ .+|-..+++... -+.+.|++... ..+-.| T Consensus 123 ~~~k~~~~vpl~~L~~~----~~p~i~~-l~~~l~~~v~~~Yt~K-~WGl~~~~~~~~v~~Rvpv~Ls~d----~~YF~d 192 (390) T TIGR00031 123 RFKKFGAHVPLLELQEI----ADPDIQL-LYQFLYRKVYKPYTVK-QWGLPLEEIDPEVIGRVPVVLSED----SSYFPD 192 (390) T ss_pred HHHHHCCCCCHHHHHHC----CCCCHHH-HHHHHHHHHHCCCCCC-CCCCCHHHCCHHHHCCEEEEEECC----CCCCCC T ss_conf 32320461556888411----6853788-9999999862477733-367885776801616353895036----886665 Q ss_pred EEEECCCCEEEECCCC--CEE--EECCCC Q ss_conf 0232045312103678--400--001267 Q gi|254781053|r 266 AVLVAAGRRPYTKGLG--LEE--IGINID 290 (466) Q Consensus 266 ~vl~a~G~~Pn~~~l~--Le~--~gi~~~ 290 (466) +++=++-+-..|..+- |+. +.|.++ T Consensus 193 r~yQg~P~~GYT~~~~kML~~Plidl~Ln 221 (390) T TIGR00031 193 RIYQGLPKGGYTKLFEKMLDHPLIDLKLN 221 (390) T ss_pred CEEECCCCCCHHHHHHHHHCCCEEEEECC T ss_conf 24622367535799899740984676308 No 444 >TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding. Probab=92.82 E-value=0.019 Score=36.37 Aligned_cols=48 Identities=21% Similarity=0.156 Sum_probs=30.0 Q ss_pred HHHHHHHCCCEEEEEEEEEEC----CCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 778764004310110011100----22210235752112322100004676652 Q gi|254781053|r 97 GINFLLKKNKIITYHGSARIV----SNNKILVKGSSSEETIEAKNIVIATGSEA 146 (466) Q Consensus 97 ~~~~~~~~~~V~~~~g~a~~~----~~~~v~V~~~~~~~~i~ad~iviATGs~p 146 (466) .+..-++..|+++++..+.+. ..+.+.|.+.. ..+++|++|+|+|+-. T Consensus 157 AL~~~~~~lGv~i~~~~~v~~~~~~~~~~~~~~~~~--~~~~ad~vV~A~G~wa 208 (357) T TIGR02352 157 ALVKALEKLGVEIIEEVEVQEIEARGEKVTAVVTSS--GDVQADQVVLAAGAWA 208 (357) T ss_pred HHHHHHHHCCCEEEECCCEEEEECCCCEEEEECCCC--CCEECCEEEEECCCCH T ss_conf 999999856947986253356432676698852885--4265574799357333 No 445 >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=92.78 E-value=0.21 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=29.3 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|..|+++|..|.+.|.+|.+.|..+ T Consensus 20 vlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476) T PRK00141 20 VLVAGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 8999227889999999997899799998998 No 446 >PRK07024 short chain dehydrogenase; Provisional Probab=92.77 E-value=0.53 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.8 Q ss_pred CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 9331999989866-8999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.--|+|.||+.+ |.+.|.++++.|.+|+++.++. T Consensus 1 M~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~ 36 (256) T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT 36 (256) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 999899984602999999999998899899998988 No 447 >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=92.74 E-value=0.014 Score=37.20 Aligned_cols=135 Identities=19% Similarity=0.294 Sum_probs=68.6 Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC------CEEEEEECCCCHHHHHHHHHHHHHHHHHHHH-CCEEC Q ss_conf 31999989866899999999879--939999379971------5025136673709899999999999986675-58164 Q gi|254781053|r 3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTY------GGTCLNIGCIPSKALLHASEMYSHIAKEAGD-LGINI 73 (466) Q Consensus 3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~------GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~-~g~~~ 73 (466) +||+||||||+|+++|+.|++.| .+|+++|+.+.. -+.+++.. |..++..-.++..+...... ..+.. T Consensus 2 ~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~---s~~~L~~lGv~~~l~~~~~~i~~~~v 78 (403) T PRK07333 2 RDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAA---ARRMLEALGVWQEIAPEAQPITDMVI 78 (403) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHHCCCCEEEEE T ss_conf 839999946999999999984699966999828866687888768886799---99999987987887751610027999 Q ss_pred C-----C------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCC Q ss_conf 7-----7------5328--------99999999999998777778764004310110011--10-022210235752112 Q gi|254781053|r 74 A-----S------CHLD--------LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEE 131 (466) Q Consensus 74 ~-----~------~~~d--------~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~ 131 (466) . . ..++ +..++.+ ..+ .......+++.+|++..+.. .+ .++..+.|...++ + T Consensus 79 ~d~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~-~~l----~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g-~ 152 (403) T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVEN-RVL----INALRKRAEALGIDLREATSVTDFETRDEGVTVTLADG-S 152 (403) T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEH-HHH----HHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCC-C T ss_conf 84655776664200246434568873687458-999----99999999828998985885789997498079997899-8 Q ss_pred CCCCEEECCCCCCCC Q ss_conf 322100004676652 Q gi|254781053|r 132 TIEAKNIVIATGSEA 146 (466) Q Consensus 132 ~i~ad~iviATGs~p 146 (466) +++++.+|-|-|++. T Consensus 153 ~i~a~llIgaDG~~S 167 (403) T PRK07333 153 TLEARLLVAADGARS 167 (403) T ss_pred EEEEEEEEECCCCCH T ss_conf 999869998348761 No 448 >PRK12921 2-dehydropantoate 2-reductase; Provisional Probab=92.74 E-value=0.22 Score=28.62 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=26.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC Q ss_conf 3210123445433201322012201110000111 Q gi|254781053|r 176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI 209 (466) Q Consensus 176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l 209 (466) |++|+|+|.+|.=+|..|++.|.+|+++.|++++ T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~~~ 35 (306) T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGRDVTFLGRSARA 35 (306) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 8999992499999999998369988999700099 No 449 >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Probab=92.69 E-value=0.2 Score=28.94 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=27.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCC Q ss_conf 3332101234454332013220122-0111000011 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGT 208 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~ 208 (466) +++++|+|+|.+|+=.+.+++.+|. +|.+++..+. T Consensus 121 g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~ 156 (280) T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280) T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 998999907868999999999849987999919989 No 450 >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=92.64 E-value=0.21 Score=28.77 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=8.4 Q ss_pred CCEEECCCCCCCC Q ss_conf 2100004676652 Q gi|254781053|r 134 EAKNIVIATGSEA 146 (466) Q Consensus 134 ~ad~iviATGs~p 146 (466) .+|.+|++.|-.| T Consensus 77 ~~d~vV~SPGI~~ 89 (481) T PRK01438 77 GTELVVTSPGWRP 89 (481) T ss_pred CCCEEEECCCCCC T ss_conf 8999998997899 No 451 >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Probab=92.61 E-value=0.25 Score=28.18 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=30.8 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC Q ss_conf 9331999989866899999999879-9399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~ 35 (466) || +++|||+|--|..+|..|++.+ .+|++.++.. T Consensus 1 m~-~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389) T COG1748 1 MM-KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389) T ss_pred CC-CEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH T ss_conf 97-289989866679999999857896299984888 No 452 >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Probab=92.60 E-value=0.019 Score=36.27 Aligned_cols=44 Identities=27% Similarity=0.505 Sum_probs=29.6 Q ss_pred CCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 22222-222222322002344201468721699972133211000002320453 Q gi|254781053|r 221 CLKIM-SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 221 ~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) +.+.+ ++.|++++.++.|++++.. ++....+ ++.+|.|++|+|- T Consensus 151 l~~~~a~~~Gv~~~~~t~V~~i~~~------~V~T~~G---~i~a~~VVvaaG~ 195 (365) T TIGR03364 151 LAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRG---DVHADQVFVCPGA 195 (365) T ss_pred HHHHHHHHCCCEEEEEEEEEEEEEE------EEEECCC---EEEEEEEEECCCC T ss_conf 9999998579289931289962014------8997892---8997669996684 No 453 >PRK05650 short chain dehydrogenase; Provisional Probab=92.58 E-value=0.58 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.7 Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 999989866-8999999998799399993799 Q gi|254781053|r 5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|-||+.+ |.+.|.++++.|.+|+++++++ T Consensus 3 VlITGassGIG~alA~~la~~G~~V~l~~r~~ 34 (270) T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNE 34 (270) T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99988764999999999998899899997988 No 454 >pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin. Probab=92.56 E-value=0.78 Score=24.56 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=29.1 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|||+|.-|..-|..++..|.+|.++|.++ T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 32 (180) T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISE 32 (180) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 8999978899999999996799399997998 No 455 >PRK06223 malate dehydrogenase; Reviewed Probab=92.37 E-value=0.28 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC Q ss_conf 93319999898668999999998799--399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~ 35 (466) || |.|||+|.-|.++|..+...+. +++|+|..+ T Consensus 1 mK--I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (312) T PRK06223 1 MK--ISIIGAGNVGATLAHLLALKELGKDVVLFDIPE 35 (312) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 97--999996989999999998579987489976999 No 456 >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=92.33 E-value=0.035 Score=34.36 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=11.3 Q ss_pred EEEEEEEECCCHHHHHHHHH Q ss_conf 69999998299889999999 Q gi|254781053|r 407 RVEGVHIIGGSAGEMIHEAA 426 (466) Q Consensus 407 ~ilG~~~vg~~a~eli~~~a 426 (466) ++-.+-++|.++.++...+. T Consensus 383 ~vk~v~l~G~~~~~i~~~l~ 402 (476) T PRK00141 383 RIKAALVLGADRAEIVAAVK 402 (476) T ss_pred HCEEEEEECCCHHHHHHHHH T ss_conf 31099997689899999998 No 457 >TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.. Probab=92.15 E-value=0.028 Score=35.10 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=49.8 Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHCCCC----- Q ss_conf 2101234454332013220122011100001---1122122221122222222--22222322002344201468----- Q gi|254781053|r 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSG---TILNGMDKEIAAHCLKIMS--KQGMNFQLNSKVSSVKKVKG----- 246 (466) Q Consensus 177 ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~---~ll~~~d~~~~~~~~~~l~--~~gV~i~~~~~v~~i~~~~~----- 246 (466) -+.||+-+. += ++|+- ++-+|+.. .+..++ ..+.+.+.+..+ +.|.++.+|++|.+++...+ T Consensus 194 ~l~~Gg~P~-~~--S~Y~L----is~le~~~GV~fP~GG~-~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~ 265 (526) T TIGR02734 194 ALFVGGNPF-TS--SIYAL----ISALEREWGVWFPRGGT-GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVAT 265 (526) T ss_pred CEECCCCCH-HH--HHHHH----HHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEE T ss_conf 321069831-68--99999----98754426740156538-899999999997468746997455311446216742331 Q ss_pred -CCEEEEEEECCCCCCCEEEEEEECCC Q ss_conf -72169997213321100000232045 Q gi|254781053|r 247 -KAQVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 247 -~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) .....+. ..+.+.++||.|+.+.= T Consensus 266 ~~~~~~v~--~~~~~~~~ad~VvSnAD 290 (526) T TIGR02734 266 GGRATAVH--LADGERLDADAVVSNAD 290 (526) T ss_pred CCEEEEEE--CCCCEEEEEEEEEECCC T ss_conf 65243455--06540331127887487 No 458 >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Probab=92.12 E-value=0.25 Score=28.14 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=26.4 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC Q ss_conf 3332101234454332013220122011100001 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG 207 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~ 207 (466) .++++|+|+|.+|+=.+++.+.+|.+|..++.++ T Consensus 167 g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~ 200 (349) T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 9889998974899999999998599799994999 No 459 >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional Probab=92.12 E-value=0.033 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=29.3 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|||.|.-|+..|..+++.|++|+-+|.++ T Consensus 6 I~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415) T PRK11064 6 ISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 9998868778999999996889489998999 No 460 >TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll.. Probab=92.08 E-value=0.031 Score=34.77 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=13.3 Q ss_pred CEEECCCCEEECCCCC Q ss_conf 3330268487024333 Q gi|254781053|r 301 FQTSISTIYAIGDVVR 316 (466) Q Consensus 301 ~~Ts~p~IyA~GDv~g 316 (466) .||-++|.|=|||=+. T Consensus 461 sRTP~~gLWLvGDS~h 476 (499) T TIGR02733 461 SRTPVKGLWLVGDSIH 476 (499) T ss_pred CCCCCCCCEEECCCCC T ss_conf 7887667643035047 No 461 >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional Probab=92.07 E-value=0.3 Score=27.60 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=7.3 Q ss_pred CCEEECCCCCC Q ss_conf 21000046766 Q gi|254781053|r 134 EAKNIVIATGS 144 (466) Q Consensus 134 ~ad~iviATGs 144 (466) .+|.++||.|. T Consensus 75 ~ad~iiI~V~T 85 (415) T PRK11064 75 PADAFLIAVPT 85 (415) T ss_pred HCCEEEEECCC T ss_conf 78999998899 No 462 >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=92.01 E-value=0.27 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=22.1 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 9999998299889999999999878987899637843778899999999986 Q gi|254781053|r 408 VEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSC 459 (466) Q Consensus 408 ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~ 459 (466) +-.+-++|..+..+...+. +.+.+ ++..+++.|+++.|...+ T Consensus 371 vk~v~~~G~~~~~i~~~~~---~~~~~-------~~~~~~l~~Av~~a~~~a 412 (450) T PRK02472 371 VKAMVVFGETAPKLARAAN---KAGIT-------IVEADNVEDAVPKAYALS 412 (450) T ss_pred CCEEEEECCCHHHHHHHHH---HCCCE-------EEECCCHHHHHHHHHHHC T ss_conf 6899996889999999997---37971-------898799999999999858 No 463 >PRK06249 2-dehydropantoate 2-reductase; Provisional Probab=92.01 E-value=0.027 Score=35.18 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999989866899999999879939999379 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) |+|||+|.-|...|.+|++.|.+|+++-++ T Consensus 8 I~IiGaGAiG~~~a~~L~~aG~~V~li~r~ 37 (313) T PRK06249 8 IAIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 999991499999999999669956999675 No 464 >PRK07660 consensus Probab=91.98 E-value=0.0096 Score=38.47 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.7 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -|.|||+|.=|..-|..++..|.+|+|+|..+ T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (283) T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQ 36 (283) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 89998969899999999996698189997988 No 465 >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Probab=91.92 E-value=0.031 Score=34.76 Aligned_cols=45 Identities=29% Similarity=0.282 Sum_probs=32.2 Q ss_pred CCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC Q ss_conf 223337763330268487024333543443000123201201112 Q gi|254781053|r 293 GCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG 337 (466) Q Consensus 293 G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 337 (466) -.|.+|+.+.||++|+|++||.+|.--=-..|.-.|+.+|+.++. T Consensus 437 ~ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~ 481 (486) T COG2509 437 VRIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR 481 (486) T ss_pred EEEEECCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 667616201220234477656555211257876102899999999 No 466 >PRK08275 putative oxidoreductase; Provisional Probab=91.89 E-value=0.029 Score=35.01 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=29.7 Q ss_pred CCCCCCCCCEEECCCCEEECCCCCCCCC-CCEECCCCCCEEECCCC Q ss_conf 2233377633302684870243335434-43000123201201112 Q gi|254781053|r 293 GCIEIGGQFQTSISTIYAIGDVVRGPML-AHKAEDEGIAVAEIISG 337 (466) Q Consensus 293 G~I~vd~~~~Ts~p~IyA~GDv~g~~~l-~~~A~~~g~~aa~~i~~ 337 (466) |.|+||.+.||++||.||||+|++...- ..-|.-.|+.|++++.. T Consensus 357 gGI~vD~~~~T~I~GLyAaGE~a~~g~Nsl~~alV~G~~Ag~~aa~ 402 (554) T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAE 402 (554) T ss_pred CEEEECCCCCEECCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 5399889986503544550023335554126778879999999999 No 467 >KOG0405 consensus Probab=91.85 E-value=0.092 Score=31.35 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=35.7 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC Q ss_conf 12222222222222322002344201468721699972133211000002320453121036 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG 279 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~ 279 (466) ....++.|.+.+|+++.+.- . +. .++. +.+...++....+.+..+|+|+|-+|.... T Consensus 113 ngIY~~~L~k~~V~~i~G~a-~-f~-~~~~--v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn 169 (478) T KOG0405 113 NGIYKRNLAKAAVKLIEGRA-R-FV-SPGE--VEVEVNDGTKIVYTAKHILIATGGRPIIPN 169 (478) T ss_pred HHHHHHHCCCCCEEEEEEEE-E-EC-CCCC--EEEEECCCEEEEEECCEEEEEECCCCCCCC T ss_conf 78988542315406996267-8-75-8994--479953881578721408997378467899 No 468 >PRK07102 short chain dehydrogenase; Provisional Probab=91.76 E-value=0.33 Score=27.31 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=30.0 Q ss_pred CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 9331999989866-8999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) || -|+|.||+.+ |.+.|.++++.|.+|+++.++. T Consensus 1 MK-~vlITGassGIG~a~A~~la~~G~~v~l~~R~~ 35 (243) T PRK07102 1 MK-KILIIGATSDIARACARRYAAAGARLYLAARDT 35 (243) T ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99-799915745999999999998799899998988 No 469 >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli.. Probab=91.68 E-value=0.23 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=25.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCC-CEEEEECCC Q ss_conf 9999898668999999998799-399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKN-KVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~-~V~lIE~~~ 35 (466) |+|||+|.=|-.++.+|+.+|. ++.+||.+. T Consensus 24 VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~ 55 (210) T TIGR02356 24 VLIIGAGGLGSPAALYLAAAGVGTITIVDDDH 55 (210) T ss_pred EEEEEECHHHHHHHHHHHHCCCCEEEEEECCE T ss_conf 59997261456899999828883789985167 No 470 >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Probab=91.65 E-value=0.033 Score=34.61 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=30.7 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC Q ss_conf 1222222222222232200234420146872169997213321100000232045 Q gi|254781053|r 218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG 272 (466) Q Consensus 218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G 272 (466) .+.+.+.++ .+++++++|+++.....+.+.+.. +++ .+.+|.|++++- T Consensus 218 ~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~--~g~--~~~~D~VI~t~p 265 (444) T COG1232 218 IEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDV--GGE--KITADGVISTAP 265 (444) T ss_pred HHHHHHHHH---HCEEECCEEEEEEECCCCCEEEEC--CCC--EEECCEEEECCC T ss_conf 999998743---033516645688872786189976--870--677356899377 No 471 >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] Probab=91.62 E-value=0.047 Score=33.45 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=15.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCC Q ss_conf 22222222222223220023442014 Q gi|254781053|r 219 AHCLKIMSKQGMNFQLNSKVSSVKKV 244 (466) Q Consensus 219 ~~~~~~l~~~gV~i~~~~~v~~i~~~ 244 (466) +.+++.|+..+|++.+|+.-..+... T Consensus 199 ~~~~kMl~hp~I~V~Lntd~~~~~~~ 224 (374) T COG0562 199 AMFEKMLDHPNIDVRLNTDFFDVKDQ 224 (374) T ss_pred HHHHHHHCCCCCEEEECCCHHHHHHH T ss_conf 99999865888269956868887644 No 472 >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. Probab=91.57 E-value=0.32 Score=27.40 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.4 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCC Q ss_conf 3332101234454332013220122-0111000011 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGT 208 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~ 208 (466) .++++|+|+|.+|+=.+++...+|. +|.++++.++ T Consensus 177 g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 212 (358) T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 988999673769999999999839918999919889 No 473 >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] Probab=91.54 E-value=0.064 Score=32.48 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=10.2 Q ss_pred CCEEECCCCCCCCC Q ss_conf 21000046766524 Q gi|254781053|r 134 EAKNIVIATGSEAS 147 (466) Q Consensus 134 ~ad~iviATGs~p~ 147 (466) .+|-++||+|.-+. T Consensus 76 ~adv~fIavgTP~~ 89 (414) T COG1004 76 DADVVFIAVGTPPD 89 (414) T ss_pred CCCEEEEECCCCCC T ss_conf 59779997489999 No 474 >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] Probab=91.52 E-value=0.3 Score=27.65 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=62.7 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH-H-CCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 3332101234454332013220122011100-0-011122------------1222211222222222222232200234 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIE-H-SGTILN------------GMDKEIAAHCLKIMSKQGMNFQLNSKVS 239 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~-~-~~~ll~------------~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 239 (466) |=.++|||||+-|.-.|-+-+|-|.+.-++. | +.++|. ...|.++..+++..++..|++....+.+ T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520) T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520) T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 83499986886316789999861211100156518820000033330056545466899999998764682455334342 Q ss_pred HHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCE Q ss_conf 420146-87216999721332110000023204531 Q gi|254781053|r 240 SVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRR 274 (466) Q Consensus 240 ~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~ 274 (466) ++++.. .+....++..+| -.+.+-.+++++|-+ T Consensus 291 ~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGAr 324 (520) T COG3634 291 KLEPAAVEGGLIEVELANG--AVLKARTVILATGAR 324 (520) T ss_pred CCEECCCCCCCEEEEECCC--CEECCCEEEEECCCC T ss_conf 0201578886079995478--351131699842764 No 475 >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Probab=91.50 E-value=0.032 Score=34.67 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=25.9 Q ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC Q ss_conf 122222222222-22322002344201468721699972133211000002320453 Q gi|254781053|r 218 AAHCLKIMSKQG-MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR 273 (466) Q Consensus 218 ~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~ 273 (466) .+.+.+.+++.| ..+..++.+..++.. + ..+.+....+ ++.+|.|++|+|- T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~t~~g---~~~a~~vv~a~G~ 210 (387) T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG---TIEADKVVLAAGA 210 (387) T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEEECCC---EEECCEEEECCCC T ss_conf 9999999997399189723524677614-7-3589995897---0981989999996 No 476 >pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Probab=91.44 E-value=0.28 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=27.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|.-|...|..|.+.| +|++||+++ T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~ 30 (115) T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDP 30 (115) T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCH T ss_conf 999878889999999998089-999999987 No 477 >TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process. Probab=91.36 E-value=1.1 Score=23.62 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHCCCCEEEEECC Q ss_conf 6899999999879939999379 Q gi|254781053|r 13 AGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 13 AG~~aA~~~~~~G~~V~lIE~~ 34 (466) +|--|=+.|+.-|.+|+||..+ T Consensus 28 SGsQAcKALkEEGy~viLVNsN 49 (1089) T TIGR01369 28 SGSQACKALKEEGYEVILVNSN 49 (1089) T ss_pred HHHHHHHHHHHCCCEEEEECCC T ss_conf 7899999987649579997588 No 478 >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=91.35 E-value=0.45 Score=26.32 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=29.4 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC Q ss_conf 93319999898668999999998799--399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~ 35 (466) || |.|||+|.-|.++|..+...+. +++|+|..+ T Consensus 1 mK--I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~ 35 (308) T cd05292 1 MK--VAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308) T ss_pred CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 97--999994888999999998679988799991889 No 479 >PRK06249 2-dehydropantoate 2-reductase; Provisional Probab=91.35 E-value=0.4 Score=26.68 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=30.5 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC Q ss_conf 11333210123445433201322012201110000 Q gi|254781053|r 172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS 206 (466) Q Consensus 172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~ 206 (466) ..+.|++|+|+|.+|.=+|..|++.|.+||++.|+ T Consensus 3 ~~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~ 37 (313) T PRK06249 3 SETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313) T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 99888999991499999999999669956999675 No 480 >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo Probab=91.34 E-value=0.4 Score=26.67 Aligned_cols=30 Identities=30% Similarity=0.626 Sum_probs=25.9 Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 999989-866899999999879939999379 Q gi|254781053|r 5 VAVVGG-GPAGYACAIKAAQLKNKVAIIEKE 34 (466) Q Consensus 5 vvIIG~-G~AG~~aA~~~~~~G~~V~lIE~~ 34 (466) ++|+|| ||-|..+|..+++.|.+|+|+-++ T Consensus 31 ~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~ 61 (194) T cd01078 31 AVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194) T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9998588578999999999839979999587 No 481 >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.33 E-value=0.38 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=28.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|+|.|-.|+++|..|.+.|.+|.+.|..+ T Consensus 12 v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (457) T PRK01390 12 VALFGLGGSGLATARALKAGGAEVIAWDDNP 42 (457) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999436999999999997899799993992 No 482 >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=91.31 E-value=0.012 Score=37.67 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=29.9 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -|.|||+|.-|-.-|..++..|.+|.++|.++ T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~ 36 (282) T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 89998978899999999995799389997998 No 483 >pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway. Probab=91.24 E-value=0.35 Score=27.10 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=28.7 Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC Q ss_conf 21012344543320132201220111000011 Q gi|254781053|r 177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT 208 (466) Q Consensus 177 ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 208 (466) +.|+|+|.||.=+|..|++.|.+|+++.|+++ T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~~ 32 (150) T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGRH 32 (150) T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCCH T ss_conf 99996689999999999977992899975636 No 484 >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.23 E-value=0.36 Score=27.04 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=30.6 Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 93319999898668999999998799399993799 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) || -|+|+|.|-.|.++|..|.+.|.+|.+.|... T Consensus 3 ~K-kvlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~ 36 (418) T PRK00683 3 LQ-RVVVLGLGVTGKSVARFLAQKGVYVIGVDNSL 36 (418) T ss_pred CC-EEEEEEECHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 86-69998088879999999997829899982981 No 485 >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Probab=91.16 E-value=0.045 Score=33.61 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.8 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC Q ss_conf 332101234454332013220122011100001112 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL 210 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll 210 (466) -.++|||+|+.|+-.|..|++-|.+|.++||+-.+- T Consensus 26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~G 61 (257) T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG 61 (257) T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 688998888279999999986896599997134688 No 486 >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.15 E-value=0.85 Score=24.31 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=29.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|+|-|..|+++|..|.+.|.+|.+.|+.+ T Consensus 17 v~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~ 47 (458) T PRK01710 17 VAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999787889999999997889799998988 No 487 >PRK07109 short chain dehydrogenase; Provisional Probab=91.12 E-value=0.96 Score=23.93 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.1 Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 999989866-8999999998799399993799 Q gi|254781053|r 5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|-|++.+ |.+.|..+++.|.+|+++.+++ T Consensus 11 VvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~ 42 (338) T PRK07109 11 VVITGASAGVGRATARAFARRGAKVVLLARGE 42 (338) T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99948434999999999998799899998999 No 488 >COG2081 Predicted flavoproteins [General function prediction only] Probab=91.11 E-value=0.041 Score=33.88 Aligned_cols=81 Identities=25% Similarity=0.330 Sum_probs=55.3 Q ss_pred HHHHCCCCHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEE Q ss_conf 32201220111000011122122--2211222222222222232200234420146872169997213321100000232 Q gi|254781053|r 192 VWTRLGSCVKIIEHSGTILNGMD--KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLV 269 (466) Q Consensus 192 ~~~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~ 269 (466) .+.++|.+-. .+...|+.|.-| .++.+.+.+.+++.||+++++++|.+++..+.+..+.. .++ .++.||.+++ T Consensus 87 ~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t--~~g--~~i~~d~lil 161 (408) T COG2081 87 WVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT--SSG--ETVKCDSLIL 161 (408) T ss_pred HHHHCCCEEE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEC--CCC--CEEECCEEEE T ss_conf 9986597157-7468525578666689999999999975958981464776763385589985--999--8898048999 Q ss_pred CCC--CEEEE Q ss_conf 045--31210 Q gi|254781053|r 270 AAG--RRPYT 277 (466) Q Consensus 270 a~G--~~Pn~ 277 (466) |+| ..|.+ T Consensus 162 AtGG~S~P~l 171 (408) T COG2081 162 ATGGKSWPKL 171 (408) T ss_pred ECCCCCCCCC T ss_conf 2288677878 No 489 >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated Probab=91.09 E-value=1.1 Score=23.44 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=29.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -|.|||+|.-|..-|..+++.|.+|.++|.++ T Consensus 4 ~VaViGaG~mG~giA~~~a~~G~~V~l~D~~~ 35 (308) T PRK06129 4 SIAIVGAGLIGRAWAIVFARAGHRVRLWDADP 35 (308) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 79997778999999999985899389998988 No 490 >PRK09117 consensus Probab=90.99 E-value=0.014 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.6 Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 19999898668999999998799399993799 Q gi|254781053|r 4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -|.|||+|.-|..-|..++..|.+|.|+|..+ T Consensus 4 ~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 35 (282) T PRK09117 4 TVGIIGAGTMGNGIAQACAVAGLDVVMVDISD 35 (282) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 79998977999999999996799689998988 No 491 >pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Probab=90.99 E-value=0.5 Score=26.00 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=28.9 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |.|||+|.=|.+.|..+++.|.+|.+..+++ T Consensus 3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~ 33 (159) T pfam01210 3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDE 33 (159) T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 9999969999999999998799899999043 No 492 >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=90.97 E-value=0.41 Score=26.61 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=29.0 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|..|+++|..|.+.|.+|.+.|.++ T Consensus 15 V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~ 45 (487) T PRK03369 15 VLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (487) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999156838999999997869799998982 No 493 >PRK09880 L-idonate 5-dehydrogenase; Provisional Probab=90.93 E-value=0.42 Score=26.53 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=26.2 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC Q ss_conf 33321012344543320132201220-111000011 Q gi|254781053|r 174 PKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT 208 (466) Q Consensus 174 P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ 208 (466) .++++|+|+|.+|+=.++.++.+|.+ |.+++.+++ T Consensus 170 g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~ 205 (343) T PRK09880 170 GKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPR 205 (343) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 988999847767999999999869987999979789 No 494 >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=90.93 E-value=0.45 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=28.7 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|+|.|..|+++|..|.+.|.+|.+.|... T Consensus 9 v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~ 39 (438) T PRK03806 9 VVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 39 (438) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999457888999999997899699998999 No 495 >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=90.91 E-value=0.39 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=28.6 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) ++|+|.|-.|+++|..|.+.|.+|.+.|..+ T Consensus 10 ~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~ 40 (448) T PRK03803 10 RIVVGLGKSGMSLVRFLARQGYQFAVTDTRE 40 (448) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 8999989999999999997889599991899 No 496 >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=90.88 E-value=0.41 Score=26.58 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=28.4 Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999898668999999998799399993799 Q gi|254781053|r 5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~ 35 (466) -+|+|.|-.|+++|..|.++|.+|.+.|..+ T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 33 (459) T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND 33 (459) T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9999548999999999997899599998989 No 497 >PRK08251 short chain dehydrogenase; Provisional Probab=90.87 E-value=1.1 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.0 Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC Q ss_conf 999989866-8999999998799399993799 Q gi|254781053|r 5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK 35 (466) Q Consensus 5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~ 35 (466) |+|.||+.+ |...|.++++.|.+|+++.++. T Consensus 5 vlITGAssGIG~alA~~la~~G~~v~l~~r~~ 36 (248) T PRK08251 5 ILITGASSGLGAGMAREFAAKGRDLALCARRT 36 (248) T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 99947863999999999998799899998988 No 498 >KOG1276 consensus Probab=90.81 E-value=0.053 Score=33.08 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=25.8 Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHCCC--CCCC-------CHHHHHHHHHHHHCC Q ss_conf 998899999999998789878996378--4377-------889999999998608 Q gi|254781053|r 416 GSAGEMIHEAAVLMEFGGSSEDLARIC--HAHP-------TMSEAVREAALSCFD 461 (466) Q Consensus 416 ~~a~eli~~~a~ai~~~~t~~~l~~~~--~~hP-------t~~E~l~~aa~~~~~ 461 (466) ++-+|++|...-++++-+.+..-.... |.|+ .=+....++|+.++. T Consensus 402 ~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~ 456 (491) T KOG1276 402 PSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLT 456 (491) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCEECCHHHHHHHHHHHHH T ss_conf 9989999999999999858788765000021520354320226889999999997 No 499 >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process. Probab=90.77 E-value=0.33 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=26.7 Q ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEC Q ss_conf 93319999898668999999998--7993999937 Q gi|254781053|r 1 MVYDVAVVGGGPAGYACAIKAAQ--LKNKVAIIEK 33 (466) Q Consensus 1 M~YDvvIIG~G~AG~~aA~~~~~--~G~~V~lIE~ 33 (466) || |-|||||..|-+.|.++|+ ++.+++|+|= T Consensus 2 kK--isvIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308) T TIGR01763 2 KK--ISVIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308) T ss_pred CE--EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE T ss_conf 55--8997068612589999986740671689850 No 500 >TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process. Probab=90.73 E-value=0.055 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.2 Q ss_pred CCCCCCCCCCCCCCCCHHHHHCC--CCHHHHHHC Q ss_conf 33210123445433201322012--201110000 Q gi|254781053|r 175 KNLLVIGAGVIGLELGSVWTRLG--SCVKIIEHS 206 (466) Q Consensus 175 ~~ivIIGgG~ig~E~A~~~~~lG--~~Vtli~~~ 206 (466) ..++|+|+|+.||-.|.++++-| .||.++||+ T Consensus 22 ~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~ 55 (283) T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERK 55 (283) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 0667987897466899999842998069998511 Done!