Query         gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 466
No_of_seqs    215 out of 11761
Neff          7.6 
Searched_HMMs 39220
Date          Mon May 30 04:31:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781053.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01350 lipoamide_DH dihydro 100.0       0       0 1036.5  27.8  464    2-466     1-481 (481)
  2 PRK06115 dihydrolipoamide dehy 100.0       0       0  870.8  30.4  462    1-466     1-466 (466)
  3 PRK06416 dihydrolipoamide dehy 100.0       0       0  868.4  30.8  460    1-466     3-462 (462)
  4 PRK13748 putative mercuric red 100.0       0       0  866.0  27.8  452    3-464    99-553 (561)
  5 PRK06467 dihydrolipoamide dehy 100.0       0       0  857.2  31.6  462    1-466     1-465 (472)
  6 TIGR02053 MerA mercuric reduct 100.0       0       0  861.6  26.4  462    3-466     1-488 (494)
  7 PRK06327 dihydrolipoamide dehy 100.0       0       0  849.5  32.4  462    2-466     4-475 (475)
  8 PRK07818 dihydrolipoamide dehy 100.0       0       0  849.4  31.0  461    1-466     1-467 (467)
  9 COG1249 Lpd Pyruvate/2-oxoglut 100.0       0       0  850.1  28.9  451    1-456     3-454 (454)
 10 PRK05976 dihydrolipoamide dehy 100.0       0       0  845.7  30.4  457    3-466     5-464 (464)
 11 PRK05249 soluble pyridine nucl 100.0       0       0  845.9  28.0  456    1-463     4-464 (465)
 12 PRK06912 acoL dihydrolipoamide 100.0       0       0  837.8  29.4  455    4-466     2-458 (458)
 13 PRK06292 dihydrolipoamide dehy 100.0       0       0  833.2  29.8  457    1-466     1-460 (460)
 14 PRK07845 flavoprotein disulfid 100.0       0       0  833.0  29.2  454    2-463     1-464 (467)
 15 PRK06370 mercuric reductase; V 100.0       0       0  823.7  30.1  450    2-460     4-456 (459)
 16 PTZ00153 lipoamide dehydrogena 100.0       0       0  823.7  26.6  456    3-463   124-671 (673)
 17 PRK07846 mycothione/glutathion 100.0       0       0  810.0  27.4  447    2-459     1-451 (453)
 18 PRK08010 pyridine nucleotide-d 100.0       0       0  810.8  25.9  433    1-459     1-440 (441)
 19 PRK06116 glutathione reductase 100.0       0       0  803.2  28.8  439    3-454     5-448 (450)
 20 TIGR03452 mycothione_red mycot 100.0       0       0  805.8  26.7  444    2-459     2-452 (452)
 21 PTZ00052 thioredoxin reductase 100.0       0       0  805.0  25.9  445    3-454    42-518 (541)
 22 PRK07251 pyridine nucleotide-d 100.0       0       0  788.0  27.6  431    1-455     2-435 (438)
 23 KOG1335 consensus              100.0       0       0  769.9  29.5  462    3-466    40-506 (506)
 24 TIGR01424 gluta_reduc_2 glutat 100.0       0       0  759.7  21.9  444    2-453     2-475 (478)
 25 TIGR01421 gluta_reduc_1 glutat 100.0       0       0  757.7  17.0  450    2-453     2-472 (475)
 26 TIGR01438 TGR thioredoxin and  100.0       0       0  674.2  21.6  448    2-453     2-493 (513)
 27 KOG0405 consensus              100.0       0       0  652.9  20.4  444    2-453    20-469 (478)
 28 KOG4716 consensus              100.0       0       0  580.1  21.2  447    2-453    19-485 (503)
 29 PRK09564 coenzyme A disulfide  100.0       0       0  538.5  16.6  404    1-454     1-434 (443)
 30 PRK13512 coenzyme A disulfide  100.0       0       0  503.4  14.3  399    1-452     1-427 (438)
 31 TIGR03385 CoA_CoA_reduc CoA-di 100.0       0       0  503.9  13.2  392   16-452     1-420 (427)
 32 TIGR01423 trypano_reduc trypan 100.0       0       0  486.3  17.6  441    3-452     4-467 (486)
 33 PRK04965 nitric oxide reductas 100.0       0       0  356.2   9.3  356    1-424     1-371 (378)
 34 PRK09754 phenylpropionate diox 100.0 5.6E-45       0  345.9  11.6  365    1-436     1-386 (400)
 35 TIGR01292 TRX_reduct thioredox 100.0 1.9E-42       0  327.6   9.4  291    3-335     1-317 (321)
 36 TIGR03143 AhpF_homolog putativ 100.0 2.9E-42       0  326.1  10.2  283    1-334     1-303 (555)
 37 PRK12770 putative glutamate sy 100.0 7.3E-42       0  323.2   8.3  291    3-336    18-344 (350)
 38 pfam07992 Pyr_redox_2 Pyridine 100.0 4.5E-40 1.1E-44  310.2   7.7  273    4-319     1-277 (277)
 39 TIGR03140 AhpF alkyl hydropero 100.0 6.5E-39 1.7E-43  301.8  10.6  286    3-336   213-509 (515)
 40 PRK10262 thioredoxin reductase 100.0 5.8E-37 1.5E-41  287.6   7.9  290    2-336     6-311 (321)
 41 TIGR02374 nitri_red_nirB nitri 100.0   5E-37 1.3E-41  288.0   4.6  362    5-429     1-394 (813)
 42 COG0492 TrxB Thioredoxin reduc 100.0 2.7E-35 6.9E-40  275.4  10.3  285    1-335     2-296 (305)
 43 COG1252 Ndh NADH dehydrogenase 100.0   7E-35 1.8E-39  272.4   4.0  282    3-337     4-329 (405)
 44 PRK11749 putative oxidoreducta 100.0 1.3E-33 3.4E-38  263.1   8.4  276    4-336   142-451 (460)
 45 TIGR03169 Nterm_to_SelD pyridi 100.0 6.3E-34 1.6E-38  265.5   3.8  278    5-337     2-308 (364)
 46 TIGR01316 gltA glutamate synth 100.0 6.2E-33 1.6E-37  258.3   8.5  279    3-336   143-459 (462)
 47 PRK12831 putative oxidoreducta 100.0 1.7E-32 4.3E-37  255.1  10.2  278    5-336   143-457 (464)
 48 PRK09853 putative selenate red 100.0 7.4E-33 1.9E-37  257.7   8.3  278    4-339   552-852 (1032)
 49 PRK12769 putative oxidoreducta 100.0 6.8E-32 1.7E-36  250.7  10.6  276    4-336   329-648 (654)
 50 TIGR03315 Se_ygfK putative sel 100.0   2E-32 5.1E-37  254.5   7.6  275    4-338   539-838 (1012)
 51 PRK12814 putative NADPH-depend 100.0 4.8E-32 1.2E-36  251.8   9.4  273    5-335   196-496 (652)
 52 PRK12810 gltD glutamate syntha 100.0 2.8E-32 7.1E-37  253.5   8.2  279    4-336   145-463 (472)
 53 PRK12809 putative oxidoreducta 100.0 4.2E-31 1.1E-35  244.9  10.8  277    4-337   312-632 (639)
 54 PRK12778 putative bifunctional 100.0 3.6E-31 9.1E-36  245.4   8.8  274    4-336   441-754 (760)
 55 COG1251 NirB NAD(P)H-nitrite r 100.0 1.4E-31 3.6E-36  248.3   6.4  372    3-440     4-392 (793)
 56 TIGR01317 GOGAT_sm_gam glutama 100.0   5E-30 1.3E-34  237.1  10.4  289    4-335   153-505 (517)
 57 PTZ00318 NADH dehydrogenase; P 100.0   5E-31 1.3E-35  244.4   4.8  304    3-363    11-378 (514)
 58 PRK12771 putative glutamate sy 100.0 7.1E-30 1.8E-34  236.0   8.5  273    4-335   139-435 (560)
 59 PRK13984 putative oxidoreducta 100.0 6.3E-30 1.6E-34  236.4   7.7  275    4-336   285-598 (604)
 60 COG0446 HcaD Uncharacterized N 100.0 6.7E-30 1.7E-34  236.2   7.6  386    5-444     1-412 (415)
 61 KOG1336 consensus              100.0   9E-30 2.3E-34  235.2   4.9  363    5-439    77-463 (478)
 62 PRK12779 putative bifunctional 100.0 6.5E-28 1.7E-32  221.7  12.2  278    4-338   308-625 (944)
 63 PRK12775 putative trifunctiona 100.0 1.5E-28 3.8E-33  226.4   7.8  274    4-336   434-749 (993)
 64 pfam02852 Pyr_redox_dim Pyridi  99.9 2.8E-27 7.3E-32  217.0  10.9  110  347-456     1-110 (110)
 65 TIGR01318 gltD_gamma_fam gluta  99.9 2.9E-27 7.3E-32  217.0   9.1  279    5-336   146-475 (480)
 66 COG3634 AhpF Alkyl hydroperoxi  99.9 4.7E-26 1.2E-30  208.2   6.7  289    3-333   212-508 (520)
 67 KOG2495 consensus               99.9   6E-26 1.5E-30  207.4   1.9  285    4-336    57-393 (491)
 68 KOG0404 consensus               99.9 3.6E-24 9.2E-29  194.4   3.8  281    4-330    10-309 (322)
 69 KOG1346 consensus               99.9 2.2E-22 5.6E-27  181.4   6.5  404    5-439   181-649 (659)
 70 COG0493 GltD NADPH-dependent g  99.9 1.9E-22 4.9E-27  181.9   5.8  282    4-336   125-447 (457)
 71 KOG0399 consensus               99.9 3.2E-21 8.3E-26  172.9  10.6  284    3-335  1786-2115(2142)
 72 TIGR01372 soxA sarcosine oxida  99.7 1.2E-17 3.1E-22  146.9   8.8  284    3-335   177-498 (1026)
 73 pfam00743 FMO-like Flavin-bind  99.7 1.2E-17   3E-22  147.1   8.1  311    5-338     4-395 (532)
 74 KOG2755 consensus               99.7 9.9E-18 2.5E-22  147.6   6.5  262    5-316     2-321 (334)
 75 COG1148 HdrA Heterodisulfide r  99.6 1.8E-16 4.6E-21  138.4   5.4  321    4-332   126-537 (622)
 76 COG2072 TrkA Predicted flavopr  99.6 6.7E-16 1.7E-20  134.2   5.8  195    2-209     8-210 (443)
 77 COG3486 IucD Lysine/ornithine   99.5   3E-13 7.8E-18  114.9   9.1  321    3-335     6-411 (436)
 78 PRK05329 anaerobic glycerol-3-  99.5 1.1E-13 2.7E-18  118.2   6.6  118  217-336   264-418 (425)
 79 KOG1399 consensus               99.5   2E-12 5.1E-17  109.0  12.2  303    1-338     5-332 (448)
 80 PRK08641 sdhA succinate dehydr  99.4 2.1E-12 5.4E-17  108.8  11.6   39    1-39      1-40  (589)
 81 pfam00070 Pyr_redox Pyridine n  99.4   8E-15   2E-19  126.4  -1.8   81  176-256     1-81  (82)
 82 PRK08071 L-aspartate oxidase;   99.4 3.7E-12 9.5E-17  107.0   9.2   38    3-41      4-41  (510)
 83 TIGR03378 glycerol3P_GlpB glyc  99.4 8.7E-13 2.2E-17  111.6   5.6  101  217-319   265-396 (419)
 84 PRK08275 putative oxidoreducta  99.4 1.3E-11 3.2E-16  103.1  11.4   36    1-36      8-45  (554)
 85 PRK07804 L-aspartate oxidase;   99.4 1.4E-11 3.5E-16  102.9  11.2   39    3-41     16-54  (533)
 86 PRK08958 sdhA succinate dehydr  99.3 7.7E-12   2E-16  104.7   9.6   38    3-40      8-45  (588)
 87 KOG3851 consensus               99.3 3.5E-13 8.9E-18  114.5   2.0  299    2-346    39-371 (446)
 88 PRK08401 L-aspartate oxidase;   99.3 3.1E-12 7.9E-17  107.6   6.6   39    2-40      1-39  (464)
 89 PRK06263 sdhA succinate dehydr  99.3 1.4E-11 3.5E-16  102.9   9.9   34    1-35      6-39  (539)
 90 PRK05945 sdhA succinate dehydr  99.3 1.8E-11 4.5E-16  102.1   9.9   41    1-41      2-44  (575)
 91 PRK09077 L-aspartate oxidase;   99.3 1.8E-11 4.7E-16  101.9   9.7   45    2-47      8-53  (535)
 92 PRK07395 L-aspartate oxidase;   99.3 1.3E-11 3.4E-16  103.0   8.8   39    2-41     10-48  (556)
 93 COG2081 Predicted flavoprotein  99.3 1.4E-12 3.5E-17  110.1   3.8  137    1-145     2-166 (408)
 94 PRK06452 sdhA succinate dehydr  99.3   2E-11 5.1E-16  101.7   9.7   38    1-38      4-41  (566)
 95 PRK06175 L-aspartate oxidase;   99.3   2E-11   5E-16  101.7   9.5   39    1-40      1-41  (433)
 96 PRK06069 sdhA succinate dehydr  99.3 2.7E-11 6.9E-16  100.7  10.1   41    1-41      4-47  (582)
 97 PRK07803 sdhA succinate dehydr  99.3 2.1E-11 5.3E-16  101.5   8.6   38    2-39      8-45  (631)
 98 PRK12844 3-ketosteroid-delta-1  99.3 8.9E-12 2.3E-16  104.2   6.6   41    3-43      7-47  (552)
 99 PTZ00139 succinate dehydrogena  99.3 1.1E-11 2.7E-16  103.6   7.0   40    2-41     34-73  (622)
100 PRK09078 sdhA succinate dehydr  99.3 5.8E-11 1.5E-15   98.3  10.6   38    2-39     12-49  (598)
101 PRK07512 L-aspartate oxidase;   99.3 4.7E-11 1.2E-15   98.9  10.2   33    2-36      9-41  (507)
102 PRK09231 fumarate reductase fl  99.3 1.5E-11 3.9E-16  102.5   6.9   41    1-41      3-45  (582)
103 pfam03486 HI0933_like HI0933-l  99.3 2.2E-10 5.6E-15   94.1  12.7  136    3-146     1-164 (405)
104 PRK08626 fumarate reductase fl  99.2 1.1E-10 2.7E-15   96.4  10.7   37    3-39      6-42  (657)
105 PRK07057 sdhA succinate dehydr  99.2 2.9E-11 7.5E-16  100.4   7.5   39    1-39     11-49  (591)
106 PRK06134 putative FAD-binding   99.2 5.2E-11 1.3E-15   98.7   8.2   42    2-43     10-51  (579)
107 PRK13800 putative oxidoreducta  99.2 3.5E-10   9E-15   92.6  11.9   35    1-35     12-46  (894)
108 PRK12842 putative succinate de  99.2 7.1E-11 1.8E-15   97.7   8.1   43    1-43      4-46  (567)
109 PTZ00188 adrenodoxin reductase  99.2 2.3E-10 5.9E-15   94.0  10.7  261    3-318    40-417 (506)
110 PRK12843 putative FAD-binding   99.2 1.6E-10 4.2E-15   95.0   9.3   41    3-43     15-55  (576)
111 KOG1800 consensus               99.2 1.3E-10 3.2E-15   95.9   8.3  276    4-336    22-403 (468)
112 PRK11259 solA N-methyltryptoph  99.2   2E-10   5E-15   94.4   8.7   36    1-36      2-37  (377)
113 PRK08205 sdhA succinate dehydr  99.2 3.7E-10 9.4E-15   92.5   9.8   37    2-39      5-41  (583)
114 PRK11728 hypothetical protein;  99.1 4.5E-11 1.2E-15   99.1   4.8  196    1-275     1-205 (400)
115 COG4529 Uncharacterized protei  99.1 1.5E-09 3.8E-14   88.0  11.5  203    2-207     1-231 (474)
116 COG0644 FixC Dehydrogenases (f  99.1 3.1E-10 7.9E-15   93.0   7.5   40    1-40      2-41  (396)
117 PRK06854 adenylylsulfate reduc  99.1 1.3E-09 3.4E-14   88.4  10.7   35    2-36     11-47  (610)
118 PRK06481 fumarate reductase fl  99.1 3.7E-10 9.3E-15   92.5   7.9   41    2-42     60-100 (506)
119 PRK07843 3-ketosteroid-delta-1  99.1 9.6E-10 2.5E-14   89.4   9.3   42    3-44      6-47  (560)
120 TIGR01317 GOGAT_sm_gam glutama  99.1 6.3E-11 1.6E-15   98.1   3.0  192  174-375   151-379 (517)
121 PRK12409 D-amino acid dehydrog  99.0 2.1E-09 5.2E-14   87.0   9.4   77  217-296   199-279 (410)
122 PRK12835 3-ketosteroid-delta-1  99.0 2.9E-09 7.3E-14   86.0  10.0   41    3-43     12-52  (584)
123 TIGR01813 flavo_cyto_c flavocy  99.0 3.4E-09 8.6E-14   85.5   9.1   37    4-40      1-38  (487)
124 PRK07121 hypothetical protein;  99.0   2E-09 5.1E-14   87.1   7.6   41    3-43     21-61  (491)
125 PRK12845 3-ketosteroid-delta-1  99.0 1.2E-09 3.1E-14   88.7   6.4   40    3-43     17-56  (566)
126 PRK12837 3-ketosteroid-delta-1  99.0 2.4E-09 6.1E-14   86.6   7.2   41    3-44     10-50  (515)
127 PRK10015 hypothetical protein;  98.9 2.6E-10 6.7E-15   93.5   1.4  140    2-146     5-164 (429)
128 pfam01134 GIDA Glucose inhibit  98.9 8.6E-09 2.2E-13   82.5   8.6  132    4-144     1-150 (391)
129 TIGR00551 nadB L-aspartate oxi  98.9 4.2E-09 1.1E-13   84.8   5.6   34    1-34      1-34  (546)
130 PRK00711 D-amino acid dehydrog  98.9 1.9E-08 4.9E-13   80.0   8.9   52  218-273   204-255 (416)
131 PRK05192 tRNA uridine 5-carbox  98.9 4.1E-08 1.1E-12   77.5  10.5  135    1-144     5-157 (621)
132 pfam00890 FAD_binding_2 FAD bi  98.8   5E-08 1.3E-12   76.9  10.8   40    4-43      1-40  (401)
133 PRK11445 putative oxidoreducta  98.8 1.5E-08 3.8E-13   80.8   7.9   48    2-52      1-53  (348)
134 COG0029 NadB Aspartate oxidase  98.8   9E-09 2.3E-13   82.3   5.9   32    4-36      9-40  (518)
135 TIGR03364 HpnW_proposed FAD de  98.8 2.8E-07 7.1E-12   71.5  13.3   35    3-37      1-35  (365)
136 COG0579 Predicted dehydrogenas  98.8 3.8E-09 9.8E-14   85.1   3.5  226    1-304     2-237 (429)
137 TIGR03329 Phn_aa_oxid putative  98.8 2.6E-07 6.6E-12   71.7  12.9   48    2-49     24-74  (460)
138 PRK06184 hypothetical protein;  98.8 8.9E-09 2.3E-13   82.4   4.9  139    2-146     6-171 (503)
139 PRK06183 mhpA 3-(3-hydroxyphen  98.8   1E-07 2.7E-12   74.6  10.0   34    3-36     13-46  (554)
140 COG3075 GlpB Anaerobic glycero  98.8 5.4E-08 1.4E-12   76.7   8.6  101  217-319   260-391 (421)
141 PRK08274 tricarballylate dehyd  98.8 4.7E-08 1.2E-12   77.2   8.2   40    3-42      5-46  (456)
142 pfam01266 DAO FAD dependent ox  98.7 3.8E-07 9.6E-12   70.5  12.5   52  217-273   149-200 (309)
143 PRK12839 hypothetical protein;  98.7 1.7E-08 4.3E-13   80.4   4.8   43    3-45     10-52  (574)
144 PRK10157 putative oxidoreducta  98.7 2.4E-08 6.1E-13   79.2   5.5   38    2-39      5-42  (428)
145 COG1233 Phytoene dehydrogenase  98.7 2.9E-08 7.3E-13   78.7   5.5   56  215-273   224-279 (487)
146 PRK08244 hypothetical protein;  98.7 5.1E-08 1.3E-12   76.9   6.7  140    1-146     1-159 (494)
147 PRK08774 consensus              98.7 1.5E-07 3.7E-12   73.6   9.0   35    1-35      1-37  (402)
148 PRK07364 2-octaprenyl-6-methox  98.7 9.9E-08 2.5E-12   74.8   8.1   58  228-290   134-191 (413)
149 PRK12834 putative FAD-binding   98.7 2.5E-08 6.4E-13   79.1   4.7   44    1-44      1-46  (549)
150 PRK07608 hypothetical protein;  98.6   4E-08   1E-12   77.6   5.2   36    1-36      4-39  (389)
151 PRK07494 2-octaprenyl-6-methox  98.6 1.6E-07   4E-12   73.3   7.9   35    3-37      6-40  (386)
152 PRK06185 hypothetical protein;  98.6 2.3E-07 5.9E-12   72.1   8.6   34    3-36      7-40  (409)
153 PRK06126 hypothetical protein;  98.6 9.4E-08 2.4E-12   74.9   6.0   34    3-36      8-41  (545)
154 TIGR01790 carotene-cycl lycope  98.6 8.9E-08 2.3E-12   75.1   5.7  135    4-146     1-148 (419)
155 pfam01494 FAD_binding_3 FAD bi  98.6 6.2E-07 1.6E-11   69.0   9.4   59  220-278   106-165 (349)
156 PRK08163 salicylate hydroxylas  98.6 6.1E-07 1.5E-11   69.1   9.3   35    3-37      5-39  (396)
157 PRK08132 hypothetical protein;  98.6 1.2E-07   3E-12   74.2   5.5   35    2-36     23-57  (549)
158 TIGR02032 GG-red-SF geranylger  98.6 7.2E-08 1.8E-12   75.8   4.4   34    3-36      1-34  (343)
159 PRK09126 hypothetical protein;  98.5 1.4E-07 3.7E-12   73.6   5.1   48  227-278   123-170 (392)
160 TIGR00031 UDP-GALP_mutase UDP-  98.5 1.3E-07 3.3E-12   74.0   4.7   47    2-48      1-48  (390)
161 PRK04176 ribulose-1,5-biphosph  98.5 2.1E-07 5.4E-12   72.4   5.8   44    3-46     26-69  (257)
162 PRK08849 2-octaprenyl-3-methyl  98.5 1.7E-07 4.4E-12   73.0   5.2   35    1-35      1-36  (384)
163 PRK07208 hypothetical protein;  98.5 2.2E-07 5.5E-12   72.3   5.7   41    2-42      3-43  (474)
164 PRK07588 hypothetical protein;  98.5 1.5E-07 3.9E-12   73.4   4.7   54  221-279   109-162 (391)
165 COG0445 GidA Flavin-dependent   98.5 4.6E-07 1.2E-11   69.9   6.8  130    3-144     5-156 (621)
166 PRK07333 2-octaprenyl-6-methox  98.5 1.3E-06 3.4E-11   66.6   9.0   56  219-278   115-170 (403)
167 PRK08013 hypothetical protein;  98.5 2.3E-07 5.9E-12   72.1   5.1   35    1-35      1-36  (400)
168 pfam01946 Thi4 Thi4 family. Th  98.5 1.9E-07   5E-12   72.6   4.6   43    3-45     18-60  (229)
169 PRK07233 hypothetical protein;  98.4 5.2E-07 1.3E-11   69.6   5.2   55  215-273   197-251 (430)
170 PRK05714 2-octaprenyl-3-methyl  98.4 5.2E-07 1.3E-11   69.5   4.9   35    1-35      1-35  (405)
171 TIGR03467 HpnE squalene-associ  98.4 5.6E-07 1.4E-11   69.3   5.0   37    5-41      1-37  (430)
172 KOG0029 consensus               98.4 6.4E-07 1.6E-11   68.9   5.2   38    2-39     15-52  (501)
173 TIGR02352 thiamin_ThiO glycine  98.3 2.2E-06 5.5E-11   65.0   7.2  203    5-274     1-207 (357)
174 TIGR02023 BchP-ChlP geranylger  98.3 5.5E-07 1.4E-11   69.4   3.8   37    3-39      1-41  (408)
175 TIGR00292 TIGR00292 thiazole b  98.3 6.4E-07 1.6E-11   68.9   4.0   39    1-39     20-60  (283)
176 PRK08850 2-octaprenyl-6-methox  98.3 1.3E-06 3.4E-11   66.6   5.2   34    1-34      1-36  (405)
177 PRK05732 2-octaprenyl-6-methox  98.3 1.3E-06 3.3E-11   66.6   5.1   54  221-278   118-172 (395)
178 PRK06834 hypothetical protein;  98.3 1.4E-06 3.6E-11   66.4   5.2  139    1-146     1-156 (488)
179 COG1635 THI4 Ribulose 1,5-bisp  98.3   1E-06 2.6E-11   67.4   4.3   38    3-40     31-68  (262)
180 COG0578 GlpA Glycerol-3-phosph  98.3 4.8E-07 1.2E-11   69.8   2.6   42    1-42     11-52  (532)
181 PRK09897 hypothetical protein;  98.3 2.2E-05 5.7E-10   57.6  11.0  179    1-194     1-211 (535)
182 PRK08773 2-octaprenyl-3-methyl  98.2 1.5E-06 3.9E-11   66.2   4.9   55  220-278   118-172 (392)
183 pfam06039 Mqo Malate:quinone o  98.2 9.9E-07 2.5E-11   67.5   3.9  264    2-308     4-277 (489)
184 COG0654 UbiH 2-polyprenyl-6-me  98.2 1.6E-06 4.2E-11   65.9   4.9   58  218-278   107-165 (387)
185 PRK12810 gltD glutamate syntha  98.2 8.3E-08 2.1E-12   75.3  -1.9   90  174-276   143-242 (472)
186 PRK07573 sdhA succinate dehydr  98.2 1.8E-06 4.6E-11   65.6   4.8   34    2-35     33-66  (638)
187 PTZ00306 NADH-dependent fumara  98.2   2E-06 5.2E-11   65.2   5.1   38    4-41    411-448 (1167)
188 COG0562 Glf UDP-galactopyranos  98.2 1.9E-06 4.8E-11   65.4   4.9   44    2-45      1-44  (374)
189 TIGR02733 desat_CrtD C-3',4' d  98.2 1.5E-06 3.8E-11   66.2   4.4  352    4-410     3-445 (499)
190 PRK09754 phenylpropionate diox  98.2 6.3E-06 1.6E-10   61.6   7.3   95    4-147   146-242 (400)
191 TIGR02485 CobZ_N-term precorri  98.2 2.3E-06 5.9E-11   64.8   5.0   39    3-41      2-42  (467)
192 PRK13339 malate:quinone oxidor  98.2 1.3E-06 3.4E-11   66.5   3.7  260    2-308     6-279 (497)
193 PRK11101 glpA sn-glycerol-3-ph  98.2 2.8E-06 7.1E-11   64.2   5.3   40    1-40      4-43  (545)
194 PRK07045 putative monooxygenas  98.2 2.6E-06 6.7E-11   64.4   5.1   49  228-278   120-168 (388)
195 PRK13984 putative oxidoreducta  98.2 1.1E-07 2.8E-12   74.4  -2.2   87  174-273   283-378 (604)
196 PRK12266 glpD glycerol-3-phosp  98.2 3.2E-06 8.1E-11   63.8   5.3   41    3-43      7-47  (503)
197 PRK08948 consensus              98.2 1.2E-05 3.1E-10   59.6   8.1   54  221-278   115-169 (392)
198 PRK13369 glycerol-3-phosphate   98.2 3.4E-06 8.7E-11   63.6   5.1   41    3-43      7-47  (503)
199 TIGR03385 CoA_CoA_reduc CoA-di  98.2 8.9E-06 2.3E-10   60.6   7.2   94    4-147   139-234 (427)
200 PRK06847 hypothetical protein;  98.2 2.5E-07 6.3E-12   71.9  -0.8   56  219-278   111-166 (375)
201 PRK08020 ubiF 2-octaprenyl-3-m  98.1 3.8E-06 9.8E-11   63.2   5.2   54  221-278   118-172 (391)
202 COG1053 SdhA Succinate dehydro  98.1 3.6E-06 9.1E-11   63.4   5.1   39    1-39      5-43  (562)
203 TIGR02734 crtI_fam phytoene de  98.1 2.6E-06 6.6E-11   64.5   4.2   35    5-39      1-35  (526)
204 PRK12769 putative oxidoreducta  98.1 1.7E-07 4.4E-12   73.0  -2.1   87  174-273   327-422 (654)
205 PRK11883 protoporphyrinogen ox  98.1 5.2E-06 1.3E-10   62.3   5.5   38    4-41      2-41  (452)
206 COG0665 DadA Glycine/D-amino a  98.1 4.8E-06 1.2E-10   62.5   5.3   39    1-39      3-41  (387)
207 KOG2415 consensus               98.1 3.7E-06 9.4E-11   63.3   4.2   45    3-47     77-127 (621)
208 COG2509 Uncharacterized FAD-de  98.1 4.2E-06 1.1E-10   62.9   4.5   59  215-276   173-231 (486)
209 PRK04965 nitric oxide reductas  98.1 1.2E-05 3.1E-10   59.5   6.9   31    5-35    144-174 (378)
210 TIGR01318 gltD_gamma_fam gluta  98.1 4.2E-07 1.1E-11   70.2  -0.7   90  172-274   141-239 (480)
211 PRK12809 putative oxidoreducta  98.1 2.2E-07 5.5E-12   72.3  -2.2   86  175-273   311-405 (639)
212 PRK08294 phenol 2-monooxygenas  98.1 5.6E-06 1.4E-10   62.0   4.8   34    2-35     32-66  (634)
213 PRK08243 4-hydroxybenzoate 3-m  98.1 7.4E-06 1.9E-10   61.1   5.2   35    1-35      1-35  (392)
214 COG3349 Uncharacterized conser  98.1 7.4E-06 1.9E-10   61.1   5.1   42    1-44      1-42  (485)
215 PRK06475 salicylate hydroxylas  98.1   7E-06 1.8E-10   61.3   5.0   35    3-37      3-37  (400)
216 PRK05335 tRNA (uracil-5-)-meth  98.0 7.6E-06 1.9E-10   61.1   4.8   33    1-33      2-34  (434)
217 PRK11749 putative oxidoreducta  98.0 4.1E-07   1E-11   70.3  -1.7   90  174-276   140-239 (460)
218 PRK05675 sdhA succinate dehydr  98.0 2.7E-05   7E-10   57.0   7.5   26   15-40      1-26  (570)
219 PRK06370 mercuric reductase; V  98.0 2.9E-05 7.4E-10   56.8   7.5   33    4-36    172-204 (459)
220 PRK06617 2-octaprenyl-6-methox  98.0 9.9E-06 2.5E-10   60.2   5.1   33    3-35      2-34  (374)
221 PRK06912 acoL dihydrolipoamide  98.0 3.3E-05 8.5E-10   56.4   7.7   95    4-147   172-269 (458)
222 PRK06567 putative bifunctional  98.0 7.7E-06   2E-10   61.0   4.3  218    3-247   402-690 (1048)
223 PRK12814 putative NADPH-depend  98.0 3.5E-07 8.9E-12   70.8  -2.6   88  174-274   193-289 (652)
224 PRK12416 protoporphyrinogen ox  98.0 1.3E-05 3.3E-10   59.3   5.2   38    1-39      1-44  (466)
225 pfam07992 Pyr_redox_2 Pyridine  98.0 9.7E-07 2.5E-11   67.6  -0.5   97  176-278     1-110 (277)
226 pfam03486 HI0933_like HI0933-l  98.0 8.7E-07 2.2E-11   67.9  -0.8   82  191-277    83-168 (405)
227 PRK06847 hypothetical protein;  98.0 1.3E-05 3.4E-10   59.3   5.2   36    1-37      4-39  (375)
228 PRK06753 hypothetical protein;  98.0 1.2E-05 3.1E-10   59.6   5.0   35    1-37      1-35  (373)
229 PRK09564 coenzyme A disulfide   98.0 1.2E-06   3E-11   66.9  -0.3   94    4-147   151-247 (443)
230 PRK13512 coenzyme A disulfide   98.0 1.8E-06 4.6E-11   65.6   0.5   33    4-36    150-182 (438)
231 COG1249 Lpd Pyruvate/2-oxoglut  98.0 5.1E-05 1.3E-09   55.0   7.9   33    5-37    176-208 (454)
232 PRK12771 putative glutamate sy  97.9 6.3E-07 1.6E-11   68.9  -1.9   88  174-274   137-233 (560)
233 KOG2311 consensus               97.9 1.6E-05 4.2E-10   58.6   5.3   33    2-34     28-60  (679)
234 pfam00743 FMO-like Flavin-bind  97.9 1.7E-06 4.4E-11   65.8   0.2   29    5-33    186-214 (532)
235 PRK05976 dihydrolipoamide dehy  97.9   4E-05   1E-09   55.8   7.1   33    4-36    177-209 (464)
236 PRK07818 dihydrolipoamide dehy  97.9 9.7E-05 2.5E-09   53.0   9.0   33    4-36    174-206 (467)
237 PRK02106 choline dehydrogenase  97.9 1.5E-05 3.8E-10   58.9   4.8   34    2-35      5-39  (555)
238 PRK07190 hypothetical protein;  97.9 1.8E-05 4.6E-10   58.3   5.0   34    3-36      6-39  (480)
239 TIGR01816 sdhA_forward succina  97.9 1.2E-05 3.1E-10   59.5   4.0   32    2-33      2-33  (615)
240 PRK07251 pyridine nucleotide-d  97.9 6.1E-05 1.5E-09   54.5   7.6   33    4-36    159-191 (438)
241 PRK05249 soluble pyridine nucl  97.9 8.4E-05 2.1E-09   53.5   8.3   94    4-147   178-274 (465)
242 COG0446 HcaD Uncharacterized N  97.9 6.9E-05 1.7E-09   54.1   7.8   36    4-39    138-173 (415)
243 PRK12831 putative oxidoreducta  97.9 9.3E-07 2.4E-11   67.7  -1.8   90  174-274   140-239 (464)
244 TIGR01350 lipoamide_DH dihydro  97.9 6.1E-05 1.6E-09   54.4   7.5  136    5-192   181-331 (481)
245 TIGR02053 MerA mercuric reduct  97.9 2.2E-05 5.6E-10   57.7   4.9  100    4-153   183-290 (494)
246 PRK13748 putative mercuric red  97.9 8.1E-05 2.1E-09   53.6   7.8   35  172-206    96-130 (561)
247 PRK12778 putative bifunctional  97.9   1E-06 2.6E-11   67.4  -2.1   87  175-273   440-535 (760)
248 KOG2820 consensus               97.9 0.00014 3.7E-09   51.7   8.9   36    1-36      6-41  (399)
249 COG1232 HemY Protoporphyrinoge  97.9 2.5E-05 6.4E-10   57.3   4.9   38    1-40      1-40  (444)
250 PRK06416 dihydrolipoamide dehy  97.9 4.8E-05 1.2E-09   55.2   6.3   33    4-36    174-206 (462)
251 PRK08010 pyridine nucleotide-d  97.8 0.00011 2.8E-09   52.6   8.2   93    4-147   160-255 (441)
252 TIGR03315 Se_ygfK putative sel  97.8 2.1E-06 5.3E-11   65.2  -0.7   86  175-274   538-632 (1012)
253 PRK05868 hypothetical protein;  97.8 2.3E-06 5.9E-11   64.8  -0.7   49  227-279   116-164 (372)
254 PRK07538 hypothetical protein;  97.8 2.8E-05 7.2E-10   56.9   4.9   34    4-37      2-35  (413)
255 PRK06116 glutathione reductase  97.8 0.00012   3E-09   52.4   7.9   33    4-36    169-201 (450)
256 PRK09853 putative selenate red  97.8 2.5E-06 6.3E-11   64.6  -0.7   85  175-274   551-645 (1032)
257 COG0493 GltD NADPH-dependent g  97.8 1.8E-05 4.6E-10   58.3   3.6   89  175-276   124-222 (457)
258 PRK06996 hypothetical protein;  97.8 3.2E-05 8.1E-10   56.5   4.7   59  219-278   119-177 (397)
259 PRK05868 hypothetical protein;  97.8 4.3E-05 1.1E-09   55.6   5.3   35    1-36      1-35  (372)
260 PRK08244 hypothetical protein;  97.8 3.1E-06 7.9E-11   63.9  -0.6   18  446-463   476-493 (494)
261 PRK06834 hypothetical protein;  97.8 2.2E-06 5.7E-11   64.9  -1.4   17  447-463   469-485 (488)
262 PRK06292 dihydrolipoamide dehy  97.8 8.7E-05 2.2E-09   53.4   6.7   34    4-37    171-204 (460)
263 PRK06327 dihydrolipoamide dehy  97.8 0.00013 3.4E-09   52.0   7.6   34    4-37    185-218 (475)
264 PRK01747 mnmC 5-methylaminomet  97.8 3.7E-05 9.4E-10   56.0   4.7   35    4-38    258-292 (660)
265 COG3380 Predicted NAD/FAD-depe  97.8   4E-05   1E-09   55.8   4.8   37    4-40      3-39  (331)
266 PRK06115 dihydrolipoamide dehy  97.8 0.00014 3.7E-09   51.7   7.6   33    4-36    176-208 (466)
267 COG1231 Monoamine oxidase [Ami  97.8 4.8E-05 1.2E-09   55.2   5.1   41    3-43      8-48  (450)
268 KOG0042 consensus               97.7   6E-05 1.5E-09   54.5   5.4   40    2-41     67-106 (680)
269 PRK07045 putative monooxygenas  97.7 6.9E-06 1.8E-10   61.4   0.5   34    3-36      6-39  (388)
270 PRK12770 putative glutamate sy  97.7 4.1E-06   1E-10   63.0  -0.7  103  175-277    18-132 (350)
271 PRK07845 flavoprotein disulfid  97.7 0.00017 4.4E-09   51.2   7.4   94    4-147   180-276 (467)
272 TIGR03219 salicylate_mono sali  97.7 6.6E-05 1.7E-09   54.2   5.1   36    1-38      1-37  (414)
273 PRK06475 salicylate hydroxylas  97.7 5.5E-06 1.4E-10   62.1  -0.5   61  218-279   110-171 (400)
274 TIGR03169 Nterm_to_SelD pyridi  97.7 5.9E-06 1.5E-10   61.8  -0.7   97  176-279     1-111 (364)
275 PRK07236 hypothetical protein;  97.7 7.2E-05 1.8E-09   54.0   4.7   33    3-35      7-39  (386)
276 TIGR01988 Ubi-OHases Ubiquinon  97.7 5.6E-05 1.4E-09   54.7   4.1  197  218-439   126-384 (445)
277 COG2303 BetA Choline dehydroge  97.7 6.6E-05 1.7E-09   54.2   4.5   36    1-36      6-41  (542)
278 PRK05257 malate:quinone oxidor  97.6 4.4E-05 1.1E-09   55.5   3.3  263    1-308     8-282 (499)
279 PRK07846 mycothione/glutathion  97.6 0.00027 6.9E-09   49.8   7.3   34    4-37    170-203 (453)
280 PRK08773 2-octaprenyl-3-methyl  97.6 7.3E-06 1.9E-10   61.2  -0.9  136    2-146     6-169 (392)
281 TIGR01316 gltA glutamate synth  97.6 9.8E-06 2.5E-10   60.2  -0.4   88  175-273   143-239 (462)
282 pfam05834 Lycopene_cycl Lycope  97.6  0.0001 2.7E-09   52.8   4.7   37    4-40      1-41  (374)
283 TIGR01812 sdhA_frdA_Gneg succi  97.6 8.8E-05 2.3E-09   53.3   4.3   30    4-33      1-33  (636)
284 COG1252 Ndh NADH dehydrogenase  97.6 1.1E-05 2.9E-10   59.8  -0.4   99  174-279     3-115 (405)
285 PRK06467 dihydrolipoamide dehy  97.6 0.00094 2.4E-08   45.8   9.3   33    4-36    176-208 (472)
286 KOG0399 consensus               97.6 3.2E-05   8E-10   56.6   1.8   87  175-274  1786-1881(2142)
287 PRK08020 ubiF 2-octaprenyl-3-m  97.6 7.8E-06   2E-10   61.0  -1.3  136    3-146     6-169 (391)
288 PRK12775 putative trifunctiona  97.6 6.4E-06 1.6E-10   61.6  -1.8   88  175-273   433-529 (993)
289 TIGR03452 mycothione_red mycot  97.6  0.0003 7.6E-09   49.4   6.7   34    4-37    171-204 (452)
290 PRK09126 hypothetical protein;  97.5 1.3E-05 3.3E-10   59.4  -0.4  138    1-146     2-167 (392)
291 PRK07364 2-octaprenyl-6-methox  97.5 1.5E-05 3.8E-10   58.9  -0.2  139    1-146    16-180 (413)
292 KOG1336 consensus               97.5 0.00081 2.1E-08   46.3   8.7   96  175-277    75-183 (478)
293 KOG4254 consensus               97.5 9.8E-05 2.5E-09   53.0   3.9   48    2-49     14-61  (561)
294 PRK06753 hypothetical protein;  97.5 1.2E-05 3.1E-10   59.5  -0.8   54  219-278   102-155 (373)
295 PRK05714 2-octaprenyl-3-methyl  97.5 1.1E-05 2.9E-10   59.8  -1.1   63  219-289   116-178 (405)
296 KOG2404 consensus               97.5  0.0013 3.4E-08   44.7   9.4   38    4-41     11-48  (477)
297 COG0654 UbiH 2-polyprenyl-6-me  97.5 1.6E-05 4.1E-10   58.7  -0.5   34    1-34      1-34  (387)
298 PTZ00052 thioredoxin reductase  97.5 0.00055 1.4E-08   47.5   7.2   32    4-35    224-255 (541)
299 COG3573 Predicted oxidoreducta  97.5  0.0002 5.2E-09   50.7   5.0   42    2-43      5-48  (552)
300 TIGR01377 soxA_mon sarcosine o  97.4 0.00016   4E-09   51.5   4.1   68  216-289   149-220 (401)
301 TIGR01373 soxB sarcosine oxida  97.4 0.00023 5.8E-09   50.3   4.5   80    2-86     30-113 (407)
302 PRK07236 hypothetical protein;  97.4 2.5E-05 6.5E-10   57.2  -0.5   45  230-278   113-157 (386)
303 PRK07190 hypothetical protein;  97.4 1.7E-05 4.3E-10   58.6  -1.5   44  102-146   119-165 (480)
304 PRK10262 thioredoxin reductase  97.4   2E-05 5.2E-10   58.0  -1.1   96  175-276     7-118 (321)
305 PRK08294 phenol 2-monooxygenas  97.4 3.7E-05 9.4E-10   56.1   0.3   19  128-146   192-210 (634)
306 PRK12779 putative bifunctional  97.4 1.3E-05 3.3E-10   59.4  -2.1   90  175-276   307-406 (944)
307 KOG0685 consensus               97.3 0.00034 8.7E-09   49.0   4.7   36    5-40     24-60  (498)
308 TIGR03140 AhpF alkyl hydropero  97.3 2.9E-05 7.5E-10   56.8  -0.9  100  174-277   212-325 (515)
309 PTZ00318 NADH dehydrogenase; P  97.3 4.9E-05 1.2E-09   55.2   0.1   19    5-23    182-200 (514)
310 TIGR03143 AhpF_homolog putativ  97.3 2.9E-05 7.3E-10   56.9  -1.0   34    4-37    145-178 (555)
311 KOG1399 consensus               97.3 5.9E-05 1.5E-09   54.6   0.5  106  174-279     6-159 (448)
312 TIGR02374 nitri_red_nirB nitri  97.3 0.00066 1.7E-08   46.9   5.8   94    6-148   151-252 (813)
313 PRK07538 hypothetical protein;  97.2   5E-05 1.3E-09   55.1  -0.4   49  230-278   119-168 (413)
314 PRK08243 4-hydroxybenzoate 3-m  97.2 5.5E-05 1.4E-09   54.8  -0.3   57  221-278   109-166 (392)
315 PRK01747 mnmC 5-methylaminomet  97.2 4.3E-05 1.1E-09   55.5  -0.9   35  173-207   255-289 (660)
316 PRK05732 2-octaprenyl-6-methox  97.2 3.4E-05 8.8E-10   56.3  -1.5  137    1-146     1-169 (395)
317 TIGR01989 COQ6 Ubiquinone bios  97.2  0.0004   1E-08   48.6   3.9   33    3-35      1-37  (481)
318 pfam01266 DAO FAD dependent ox  97.2 4.1E-05 1.1E-09   55.7  -1.2   36    4-39      1-36  (309)
319 TIGR02730 carot_isom carotene   97.2 0.00042 1.1E-08   48.4   3.9   37    3-39      1-37  (506)
320 KOG2495 consensus               97.2  0.0013 3.4E-08   44.7   6.5  105  175-280    56-175 (491)
321 PTZ00153 lipoamide dehydrogena  97.2  0.0023 5.8E-08   43.0   7.5   47  260-313   279-328 (673)
322 TIGR02028 ChlP geranylgeranyl   97.2 0.00038 9.7E-09   48.7   3.5   99    5-114     3-115 (401)
323 PRK07494 2-octaprenyl-6-methox  97.2 5.3E-05 1.3E-09   54.9  -1.0   56  219-278   113-168 (386)
324 PRK08774 consensus              97.2 9.5E-05 2.4E-09   53.1   0.3   49  229-278   124-173 (402)
325 PRK08255 salicylyl-CoA 5-hydro  97.1 0.00068 1.7E-08   46.8   4.5   34    1-36      1-36  (770)
326 TIGR01984 UbiH 2-polyprenyl-6-  97.1 0.00062 1.6E-08   47.1   4.1   32    4-35      1-37  (425)
327 PRK06996 hypothetical protein;  97.1 9.6E-05 2.4E-09   53.0  -0.3  136    3-146    12-174 (397)
328 PRK08948 consensus              97.0 7.8E-05   2E-09   53.7  -1.1  136    3-146     1-166 (392)
329 PRK13977 myosin-cross-reactive  97.0  0.0008   2E-08   46.3   3.7   62  215-276   226-294 (577)
330 PRK08013 hypothetical protein;  96.9 0.00012 3.1E-09   52.2  -0.9   47  228-278   125-171 (400)
331 TIGR00137 gid gid protein; Int  96.9  0.0013 3.3E-08   44.8   4.2   32    4-35      2-33  (444)
332 COG2907 Predicted NAD/FAD-bind  96.9 0.00091 2.3E-08   45.9   3.5   36    4-40     10-45  (447)
333 pfam00070 Pyr_redox Pyridine n  96.9  0.0032 8.1E-08   42.0   6.2   32    5-36      2-33  (82)
334 KOG1298 consensus               96.9  0.0014 3.5E-08   44.6   4.2   33    3-35     46-78  (509)
335 PRK07608 hypothetical protein;  96.8 0.00014 3.5E-09   51.9  -1.2   55  220-278   117-171 (389)
336 KOG2614 consensus               96.8  0.0022 5.6E-08   43.1   4.9   44    1-44      1-46  (420)
337 PTZ00306 NADH-dependent fumara  96.8 0.00028 7.2E-09   49.6   0.2   19  127-145   601-619 (1167)
338 TIGR03219 salicylate_mono sali  96.7 0.00019 4.9E-09   50.8  -1.0   53  220-278   110-162 (414)
339 COG1148 HdrA Heterodisulfide r  96.7 0.00036 9.2E-09   48.9   0.2   83  174-256   124-219 (622)
340 COG0492 TrxB Thioredoxin reduc  96.7 0.00034 8.7E-09   49.0  -0.1   97  175-277     4-117 (305)
341 pfam04820 Trp_halogenase Trypt  96.7  0.0026 6.7E-08   42.6   4.4  104  216-331   158-263 (457)
342 COG2072 TrkA Predicted flavopr  96.7 0.00035 8.9E-09   49.0  -0.2   35  175-209     9-44  (443)
343 TIGR02360 pbenz_hydroxyl 4-hyd  96.7  0.0032 8.1E-08   42.0   4.7  160    1-168     1-192 (393)
344 KOG2853 consensus               96.6  0.0023 5.9E-08   43.0   3.9   62    3-65     87-163 (509)
345 PRK08850 2-octaprenyl-6-methox  96.6 0.00024   6E-09   50.2  -1.2   48  227-278   124-171 (405)
346 KOG1276 consensus               96.6  0.0033 8.5E-08   41.8   4.5   37    3-39     12-50  (491)
347 KOG2665 consensus               96.6  0.0017 4.3E-08   44.0   2.9  231    2-314    48-300 (453)
348 TIGR01292 TRX_reduct thioredox  96.6 0.00039 9.8E-09   48.6  -0.6  126  176-313     2-159 (321)
349 COG0644 FixC Dehydrogenases (f  96.5 0.00039   1E-08   48.6  -0.8   36  303-338   266-306 (396)
350 PRK09897 hypothetical protein;  96.5 0.00065 1.7E-08   47.0   0.2   82  192-277    80-169 (535)
351 PRK08849 2-octaprenyl-3-methyl  96.5  0.0002 5.1E-09   50.7  -2.5   47  228-278   124-170 (384)
352 KOG1238 consensus               96.4  0.0035   9E-08   41.6   3.8   35    2-36     57-92  (623)
353 pfam00996 GDI GDP dissociation  96.4   0.006 1.5E-07   40.0   4.9   40    2-41      4-43  (439)
354 PRK10157 putative oxidoreducta  96.4 0.00043 1.1E-08   48.3  -1.1   53  221-277   114-166 (428)
355 pfam01134 GIDA Glucose inhibit  96.3  0.0008   2E-08   46.3  -0.3   39  298-337   346-385 (391)
356 TIGR01789 lycopene_cycl lycope  96.2  0.0073 1.9E-07   39.3   4.3   38    4-41      1-40  (392)
357 TIGR02731 phytoene_desat phyto  96.2  0.0073 1.9E-07   39.3   4.2   40    5-44      2-41  (454)
358 KOG3855 consensus               96.2  0.0063 1.6E-07   39.8   3.8   33    2-34     36-72  (481)
359 pfam01593 Amino_oxidase Flavin  96.1  0.0061 1.5E-07   39.9   3.7   52  218-273   207-258 (444)
360 TIGR01176 fum_red_Fp fumarate   96.1   0.008   2E-07   39.1   4.0   31    3-33      4-36  (585)
361 TIGR02732 zeta_caro_desat caro  96.0    0.01 2.6E-07   38.3   4.4   36    5-40      2-37  (474)
362 TIGR02061 aprA adenylylsulfate  96.0  0.0064 1.6E-07   39.8   3.3   32    4-35      1-36  (651)
363 KOG2960 consensus               95.9  0.0025 6.5E-08   42.7   1.0   41    3-43     77-119 (328)
364 COG3380 Predicted NAD/FAD-depe  95.9   0.002 5.2E-08   43.4   0.4   41  229-272   117-157 (331)
365 KOG1335 consensus               95.8   0.019 4.8E-07   36.4   4.8   35    5-39    214-248 (506)
366 PRK10015 hypothetical protein;  95.7  0.0012   3E-08   45.1  -1.4   53  221-277   114-166 (429)
367 PRK12409 D-amino acid dehydrog  95.7  0.0016 4.1E-08   44.2  -0.9   37    1-38      1-37  (410)
368 PRK07208 hypothetical protein;  95.7  0.0018 4.5E-08   43.8  -0.7   57  217-273   214-271 (474)
369 PRK09496 trkA potassium transp  95.7   0.019   5E-07   36.2   4.6   33    1-35      1-33  (455)
370 pfam01262 AlaDh_PNT_C Alanine   95.6   0.024   6E-07   35.6   4.7   32    4-35     22-53  (150)
371 PRK06617 2-octaprenyl-6-methox  95.5  0.0019 4.9E-08   43.5  -1.1   46  228-278   118-163 (374)
372 KOG0029 consensus               95.5  0.0033 8.5E-08   41.8   0.1   40  229-272   228-268 (501)
373 TIGR01790 carotene-cycl lycope  95.5  0.0042 1.1E-07   41.1   0.6   55  216-275    92-148 (419)
374 PRK11883 protoporphyrinogen ox  95.5  0.0024 6.1E-08   42.9  -0.7   44  226-273   230-273 (452)
375 TIGR02023 BchP-ChlP geranylger  95.5   0.011 2.7E-07   38.2   2.6   52  225-277   106-167 (408)
376 pfam00890 FAD_binding_2 FAD bi  95.4  0.0031   8E-08   42.0  -0.3   26  292-317   357-388 (401)
377 COG0445 GidA Flavin-dependent   95.3  0.0085 2.2E-07   38.9   1.6   36  299-335   352-388 (621)
378 PRK07233 hypothetical protein;  95.3  0.0031   8E-08   42.0  -0.6   37    5-41      2-38  (430)
379 PRK00711 D-amino acid dehydrog  95.3  0.0027 6.8E-08   42.5  -0.9   36    1-38      1-36  (416)
380 KOG2614 consensus               95.2  0.0051 1.3E-07   40.5   0.4   29  307-335   289-322 (420)
381 PRK06185 hypothetical protein;  95.2  0.0023 5.8E-08   43.0  -1.4   51  227-278   121-172 (409)
382 COG0569 TrkA K+ transport syst  95.1   0.037 9.5E-07   34.2   4.6   33    1-35      1-33  (225)
383 PRK11445 putative oxidoreducta  95.1  0.0038 9.7E-08   41.4  -0.5   50  228-278   111-160 (348)
384 TIGR01424 gluta_reduc_2 glutat  95.1   0.033 8.3E-07   34.6   4.2   54  219-275   105-160 (478)
385 PRK06522 2-dehydropantoate 2-r  95.1  0.0031 7.9E-08   42.1  -1.2   33    1-35      1-33  (307)
386 PRK12921 2-dehydropantoate 2-r  95.0  0.0034 8.7E-08   41.8  -1.1   32    1-34      1-32  (306)
387 pfam03721 UDPG_MGDP_dh_N UDP-g  95.0   0.044 1.1E-06   33.7   4.6   33    1-35      1-33  (185)
388 COG5044 MRS6 RAB proteins gera  94.9   0.046 1.2E-06   33.5   4.6   40    2-41      6-45  (434)
389 COG1251 NirB NAD(P)H-nitrite r  94.9   0.012   3E-07   37.8   1.5   31    5-35    148-178 (793)
390 PRK07588 hypothetical protein;  94.9  0.0044 1.1E-07   41.0  -0.8   35    1-37      1-35  (391)
391 COG1206 Gid NAD(FAD)-utilizing  94.9   0.034 8.6E-07   34.5   3.7   33    3-35      4-36  (439)
392 PRK08163 salicylate hydroxylas  94.8   0.005 1.3E-07   40.5  -0.6   56  219-278   113-169 (396)
393 KOG4405 consensus               94.8   0.035 8.8E-07   34.4   3.7   37    3-39      9-45  (547)
394 TIGR00692 tdh L-threonine 3-de  94.7   0.082 2.1E-06   31.7   5.3   42  165-207   153-196 (341)
395 pfam01946 Thi4 Thi4 family. Th  94.6  0.0088 2.2E-07   38.8   0.3   37  175-211    18-54  (229)
396 PTZ00188 adrenodoxin reductase  94.5  0.0037 9.3E-08   41.5  -1.9  101  154-273    25-136 (506)
397 KOG1298 consensus               94.5   0.017 4.4E-07   36.6   1.5   46  229-275   162-208 (509)
398 PRK07573 sdhA succinate dehydr  94.5    0.02 5.1E-07   36.2   1.8   32  292-326   404-435 (638)
399 TIGR00137 gid gid protein; Int  94.5   0.012 3.1E-07   37.8   0.6   37  281-317   307-352 (444)
400 KOG1439 consensus               94.4   0.017 4.4E-07   36.6   1.4   41    1-41      1-43  (440)
401 PRK09424 pntA NAD(P) transhydr  94.4   0.055 1.4E-06   32.9   4.0   36  173-208   164-199 (510)
402 TIGR03467 HpnE squalene-associ  94.4   0.007 1.8E-07   39.5  -0.6   53  217-272   210-262 (430)
403 pfam02558 ApbA Ketopantoate re  94.4  0.0081 2.1E-07   39.0  -0.3   31    5-35      1-31  (150)
404 PRK05192 tRNA uridine 5-carbox  94.4  0.0069 1.7E-07   39.5  -0.7   38  297-335   352-390 (621)
405 PRK06522 2-dehydropantoate 2-r  94.4   0.075 1.9E-06   32.0   4.6   34  176-209     2-35  (307)
406 PRK06184 hypothetical protein;  94.4   0.007 1.8E-07   39.5  -0.7   59  219-278   116-174 (503)
407 PRK08229 2-dehydropantoate 2-r  94.4  0.0068 1.7E-07   39.6  -0.8   34    1-34      1-34  (341)
408 COG0686 Ald Alanine dehydrogen  94.4  0.0087 2.2E-07   38.8  -0.3   43  173-215   167-209 (371)
409 TIGR01438 TGR thioredoxin and   94.3   0.024 6.2E-07   35.5   1.9   30    5-34    191-220 (513)
410 PRK13369 glycerol-3-phosphate   94.3  0.0089 2.3E-07   38.7  -0.4   49  225-273   165-214 (503)
411 PRK12416 protoporphyrinogen ox  94.2  0.0079   2E-07   39.1  -0.8   48  219-272   230-277 (466)
412 TIGR01810 betA choline dehydro  94.2    0.04   1E-06   34.0   2.8  100  216-317   200-311 (540)
413 PRK06126 hypothetical protein;  94.1   0.009 2.3E-07   38.7  -0.6   42  105-146   140-188 (545)
414 PRK12839 hypothetical protein;  94.1   0.011 2.8E-07   38.1  -0.2   56  217-273   218-276 (574)
415 COG1635 THI4 Ribulose 1,5-bisp  94.1   0.016 4.1E-07   36.8   0.7   36  175-210    31-66  (262)
416 PRK08255 salicylyl-CoA 5-hydro  94.1  0.0034 8.7E-08   41.7  -2.8   23  417-439   641-663 (770)
417 TIGR02360 pbenz_hydroxyl 4-hyd  94.0    0.02 5.1E-07   36.1   1.1   52  223-275   111-166 (393)
418 pfam01494 FAD_binding_3 FAD bi  94.0  0.0094 2.4E-07   38.5  -0.6   35    3-37      2-36  (349)
419 COG0686 Ald Alanine dehydrogen  94.0   0.059 1.5E-06   32.7   3.3   22    9-33     17-38  (371)
420 TIGR01984 UbiH 2-polyprenyl-6-  93.9   0.015 3.7E-07   37.1   0.2  187  216-439   119-344 (425)
421 TIGR03026 NDP-sugDHase nucleot  93.9     0.1 2.6E-06   31.0   4.5   33    1-35      1-33  (411)
422 TIGR01811 sdhA_Bsu succinate d  93.9   0.062 1.6E-06   32.6   3.3   28    5-32      1-28  (620)
423 KOG4716 consensus               93.8    0.15 3.9E-06   29.8   5.2   28  250-277   148-175 (503)
424 PRK05335 tRNA (uracil-5-)-meth  93.8    0.01 2.6E-07   38.3  -0.8   39  297-336   323-362 (434)
425 pfam06100 Strep_67kDa_ant Stre  93.8    0.12 3.1E-06   30.4   4.7   38    4-41      4-45  (500)
426 KOG2844 consensus               93.8   0.088 2.2E-06   31.5   4.0   33    3-35     40-73  (856)
427 TIGR00136 gidA glucose-inhibit  93.8   0.069 1.8E-06   32.2   3.4   32    3-34      1-32  (630)
428 PRK08132 hypothetical protein;  93.7   0.012   3E-07   37.9  -0.6   42  105-146   139-185 (549)
429 PRK06183 mhpA 3-(3-hydroxyphen  93.7   0.012   3E-07   37.9  -0.6   42  105-146   128-176 (554)
430 PRK08267 short chain dehydroge  93.6    0.33 8.4E-06   27.3   6.7   34    1-35      1-35  (258)
431 COG3349 Uncharacterized conser  93.6   0.013 3.3E-07   37.5  -0.5   30  216-245   216-245 (485)
432 PRK08229 2-dehydropantoate 2-r  93.6    0.12 3.2E-06   30.4   4.4   31  176-206     4-34  (341)
433 TIGR01320 mal_quin_oxido malat  93.5    0.04   1E-06   33.9   1.8  100  218-321   181-294 (487)
434 PRK08274 tricarballylate dehyd  93.4   0.011 2.8E-07   38.1  -1.2   26  292-317   394-425 (456)
435 PRK11259 solA N-methyltryptoph  93.4   0.013 3.3E-07   37.5  -0.9   51  218-273   152-202 (377)
436 COG1004 Ugd Predicted UDP-gluc  93.3    0.14 3.5E-06   30.0   4.3   33    1-35      1-33  (414)
437 PRK06452 sdhA succinate dehydr  93.3   0.015 3.8E-07   37.1  -0.6   25  292-316   346-371 (566)
438 PRK02472 murD UDP-N-acetylmura  93.3   0.017 4.3E-07   36.7  -0.4   31    5-35     12-42  (450)
439 PRK02006 murD UDP-N-acetylmura  93.3    0.16 4.1E-06   29.5   4.6   31    5-35     10-40  (501)
440 PRK01438 murD UDP-N-acetylmura  93.3   0.018 4.5E-07   36.6  -0.4   31    5-35     17-47  (481)
441 PRK05708 2-dehydropantoate 2-r  93.2    0.15 3.8E-06   29.8   4.3   33    1-35      3-35  (305)
442 COG1233 Phytoene dehydrogenase  93.0   0.018 4.5E-07   36.5  -0.7   41    1-41      2-42  (487)
443 TIGR00031 UDP-GALP_mutase UDP-  92.9   0.021 5.5E-07   35.9  -0.4   89  192-290   123-221 (390)
444 TIGR02352 thiamin_ThiO glycine  92.8   0.019 4.8E-07   36.4  -0.7   48   97-146   157-208 (357)
445 PRK00141 murD UDP-N-acetylmura  92.8    0.21 5.4E-06   28.7   4.6   31    5-35     20-50  (476)
446 PRK07024 short chain dehydroge  92.8    0.53 1.3E-05   25.8   6.6   35    1-35      1-36  (256)
447 PRK07333 2-octaprenyl-6-methox  92.7   0.014 3.7E-07   37.2  -1.4  135    3-146     2-167 (403)
448 PRK12921 2-dehydropantoate 2-r  92.7    0.22 5.5E-06   28.6   4.6   34  176-209     2-35  (306)
449 TIGR03366 HpnZ_proposed putati  92.7     0.2   5E-06   28.9   4.3   35  174-208   121-156 (280)
450 PRK01438 murD UDP-N-acetylmura  92.6    0.21 5.3E-06   28.8   4.4   13  134-146    77-89  (481)
451 COG1748 LYS9 Saccharopine dehy  92.6    0.25 6.4E-06   28.2   4.8   34    1-35      1-35  (389)
452 TIGR03364 HpnW_proposed FAD de  92.6   0.019 4.9E-07   36.3  -0.9   44  221-273   151-195 (365)
453 PRK05650 short chain dehydroge  92.6    0.58 1.5E-05   25.5   6.6   31    5-35      3-34  (270)
454 pfam02737 3HCDH_N 3-hydroxyacy  92.6    0.78   2E-05   24.6   7.5   31    5-35      2-32  (180)
455 PRK06223 malate dehydrogenase;  92.4    0.28 7.2E-06   27.8   4.8   33    1-35      1-35  (312)
456 PRK00141 murD UDP-N-acetylmura  92.3   0.035   9E-07   34.4   0.1   20  407-426   383-402 (476)
457 TIGR02734 crtI_fam phytoene de  92.2   0.028 7.1E-07   35.1  -0.5   86  177-272   194-290 (526)
458 TIGR03201 dearomat_had 6-hydro  92.1    0.25 6.4E-06   28.1   4.3   34  174-207   167-200 (349)
459 PRK11064 wecC UDP-N-acetyl-D-m  92.1   0.033 8.5E-07   34.6  -0.2   31    5-35      6-36  (415)
460 TIGR02733 desat_CrtD C-3',4' d  92.1   0.031 7.9E-07   34.8  -0.4   16  301-316   461-476 (499)
461 PRK11064 wecC UDP-N-acetyl-D-m  92.1     0.3 7.6E-06   27.6   4.6   11  134-144    75-85  (415)
462 PRK02472 murD UDP-N-acetylmura  92.0    0.27 6.8E-06   28.0   4.3   42  408-459   371-412 (450)
463 PRK06249 2-dehydropantoate 2-r  92.0   0.027 6.9E-07   35.2  -0.7   30    5-34      8-37  (313)
464 PRK07660 consensus              92.0  0.0096 2.5E-07   38.5  -3.1   32    4-35      5-36  (283)
465 COG2509 Uncharacterized FAD-de  91.9   0.031 7.9E-07   34.8  -0.5   45  293-337   437-481 (486)
466 PRK08275 putative oxidoreducta  91.9   0.029 7.3E-07   35.0  -0.7   45  293-337   357-402 (554)
467 KOG0405 consensus               91.8   0.092 2.3E-06   31.3   1.8   57  218-279   113-169 (478)
468 PRK07102 short chain dehydroge  91.8    0.33 8.4E-06   27.3   4.6   34    1-35      1-35  (243)
469 TIGR02356 adenyl_thiF thiazole  91.7    0.23 5.9E-06   28.4   3.7   31    5-35     24-55  (210)
470 COG1232 HemY Protoporphyrinoge  91.7   0.033 8.3E-07   34.6  -0.7   48  218-272   218-265 (444)
471 COG0562 Glf UDP-galactopyranos  91.6   0.047 1.2E-06   33.5   0.1   26  219-244   199-224 (374)
472 TIGR03451 mycoS_dep_FDH mycoth  91.6    0.32 8.1E-06   27.4   4.3   35  174-208   177-212 (358)
473 COG1004 Ugd Predicted UDP-gluc  91.5   0.064 1.6E-06   32.5   0.7   14  134-147    76-89  (414)
474 COG3634 AhpF Alkyl hydroperoxi  91.5     0.3 7.5E-06   27.6   4.1   99  174-274   211-324 (520)
475 COG0665 DadA Glycine/D-amino a  91.5   0.032 8.2E-07   34.7  -0.8   51  218-273   159-210 (387)
476 pfam02254 TrkA_N TrkA-N domain  91.4    0.28 7.1E-06   27.8   3.9   30    5-35      1-30  (115)
477 TIGR01369 CPSaseII_lrg carbamo  91.4     1.1 2.7E-05   23.6   7.9   22   13-34     28-49  (1089)
478 cd05292 LDH_2 A subgroup of L-  91.3    0.45 1.1E-05   26.3   4.9   33    1-35      1-35  (308)
479 PRK06249 2-dehydropantoate 2-r  91.3     0.4   1E-05   26.7   4.6   35  172-206     3-37  (313)
480 cd01078 NAD_bind_H4MPT_DH NADP  91.3     0.4   1E-05   26.7   4.6   30    5-34     31-61  (194)
481 PRK01390 murD UDP-N-acetylmura  91.3    0.38 9.6E-06   26.9   4.5   31    5-35     12-42  (457)
482 PRK05808 3-hydroxybutyryl-CoA   91.3   0.012 3.2E-07   37.7  -3.1   32    4-35      5-36  (282)
483 pfam02558 ApbA Ketopantoate re  91.2    0.35 8.9E-06   27.1   4.3   32  177-208     1-32  (150)
484 PRK00683 murD UDP-N-acetylmura  91.2    0.36 9.1E-06   27.0   4.3   34    1-35      3-36  (418)
485 PRK04176 ribulose-1,5-biphosph  91.2   0.045 1.1E-06   33.6  -0.4   36  175-210    26-61  (257)
486 PRK01710 murD UDP-N-acetylmura  91.2    0.85 2.2E-05   24.3   6.2   31    5-35     17-47  (458)
487 PRK07109 short chain dehydroge  91.1    0.96 2.4E-05   23.9   6.4   31    5-35     11-42  (338)
488 COG2081 Predicted flavoprotein  91.1   0.041   1E-06   33.9  -0.6   81  192-277    87-171 (408)
489 PRK06129 3-hydroxyacyl-CoA deh  91.1     1.1 2.8E-05   23.4   7.2   32    4-35      4-35  (308)
490 PRK09117 consensus              91.0   0.014 3.5E-07   37.4  -3.2   32    4-35      4-35  (282)
491 pfam01210 NAD_Gly3P_dh_N NAD-d  91.0     0.5 1.3E-05   26.0   4.8   31    5-35      3-33  (159)
492 PRK03369 murD UDP-N-acetylmura  91.0    0.41   1E-05   26.6   4.4   31    5-35     15-45  (487)
493 PRK09880 L-idonate 5-dehydroge  90.9    0.42 1.1E-05   26.5   4.4   35  174-208   170-205 (343)
494 PRK03806 murD UDP-N-acetylmura  90.9    0.45 1.1E-05   26.3   4.5   31    5-35      9-39  (438)
495 PRK03803 murD UDP-N-acetylmura  90.9    0.39 9.9E-06   26.8   4.2   31    5-35     10-40  (448)
496 PRK02705 murD UDP-N-acetylmura  90.9    0.41 1.1E-05   26.6   4.4   31    5-35      3-33  (459)
497 PRK08251 short chain dehydroge  90.9     1.1 2.8E-05   23.4   6.5   31    5-35      5-36  (248)
498 KOG1276 consensus               90.8   0.053 1.4E-06   33.1  -0.3   46  416-461   402-456 (491)
499 TIGR01763 MalateDH_bact malate  90.8    0.33 8.4E-06   27.3   3.7   31    1-33      2-34  (308)
500 TIGR00292 TIGR00292 thiazole b  90.7   0.055 1.4E-06   33.0  -0.3   32  175-206    22-55  (283)

No 1  
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00  E-value=0  Score=1036.50  Aligned_cols=464  Identities=48%  Similarity=0.788  Sum_probs=448.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC-CCCCH
Q ss_conf             33199998986689999999987993999937997150251366737098999999999999866755816477-53289
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIAS-CHLDL   80 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~-~~~d~   80 (466)
                      .||||||||||+||-||++||++|+||+|||| +.|||||+|+||||||+||++|++++++.+.+.+||++..+ ..+||
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK-~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~   79 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDW   79 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEE-CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECH
T ss_conf             95189987787727999999864980899980-35687487277675478877667899999889867803367126758


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCCCC-CCCCC
Q ss_conf             99999999999987777787640043101100111002221023575211--2322100004676652444576-65321
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE--ETIEAKNIVIATGSEASGLPGM-SIDFD  157 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~--~~i~ad~iviATGs~p~~iP~~-~~~~~  157 (466)
                      +++++||+.++++++.+++.+++++||++++|+|+|.++++|.|++....  ++++++++||||||+|+.||+. +.+.+
T Consensus        80 ~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~  159 (481)
T TIGR01350        80 EKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDED  159 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99999988987542467898863068059999999985858998356553114787403799338603435777865767


Q ss_pred             CE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             00--2453057411111133321012344543320132201220111000011122122221122222222222-22322
Q gi|254781053|r  158 EQ--VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG-MNFQL  234 (466)
Q Consensus       158 ~~--~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~g-V~i~~  234 (466)
                      .+  .++||+++|+|++.|+|++|||||+||+|||++|++||++||+||..||+||.+|+|+++.+++.|+++| |+|++
T Consensus       160 ~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~  239 (481)
T TIGR01350       160 GKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILT  239 (481)
T ss_pred             CCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             78878983268743224885669987866778899999853980899945750035431689999999997449849854


Q ss_pred             CHHHH--HHHCCCCCCEEEEEEECC-CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE
Q ss_conf             00234--420146872169997213-321100000232045312103678400001267642233377633302684870
Q gi|254781053|r  235 NSKVS--SVKKVKGKAQVVYRSTDD-EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI  311 (466)
Q Consensus       235 ~~~v~--~i~~~~~~~~v~~~~~~g-~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~  311 (466)
                      |++|+  .++..++.+.+.+...++ +..++++|.||+|+||+||+++|||+++||++|+||.|+||++||||+|||||+
T Consensus       240 ~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAI  319 (481)
T TIGR01350       240 NAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAI  319 (481)
T ss_pred             CCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEE
T ss_conf             85442335775287899999987998058898739999842434767646021211887898188798325168966688


Q ss_pred             CCCCCCCCCCCEECCCCCCEEECCCCCCC------CCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             24333543443000123201201112222------222333322100014455100147888623466589999604470
Q gi|254781053|r  312 GDVVRGPMLAHKAEDEGIAVAEIISGQKG------HVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANG  385 (466)
Q Consensus       312 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~------~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~  385 (466)
                      |||++++||||+|.+||++||++|+|+..      ++||..||++|||+||+|+|||||+|||++|++|++++|||+.++
T Consensus       320 GDv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnG  399 (481)
T TIGR01350       320 GDVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANG  399 (481)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCC
T ss_conf             73478702689999878999999818761100001255357887784687366303887999855985899970101042


Q ss_pred             HHHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             3441889-833899999789986999999829988999999999987898789963784377889999999998608977
Q gi|254781053|r  386 RARSMNS-IDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPI  464 (466)
Q Consensus       386 ra~~~~~-~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~  464 (466)
                      ||.++++ ++||+|+|+|+++++|||+||+||+|+|||+.+++||.+++|++||.+++|+|||+||+++|||++++++||
T Consensus       400 kA~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a~g~~i  479 (481)
T TIGR01350       400 KALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAALGKPI  479 (481)
T ss_pred             HHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             12000567876189999647781888998842443268899998774898899998527898888999999999818856


Q ss_pred             CC
Q ss_conf             49
Q gi|254781053|r  465 HM  466 (466)
Q Consensus       465 ~~  466 (466)
                      ||
T Consensus       480 H~  481 (481)
T TIGR01350       480 HM  481 (481)
T ss_pred             CC
T ss_conf             79


No 2  
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=870.85  Aligned_cols=462  Identities=51%  Similarity=0.821  Sum_probs=432.4

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHHHCCEECCCCCC
Q ss_conf             93-3199998986689999999987993999937997150251366737098999999999999-866755816477532
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIA-KEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~~g~~~~~~~~   78 (466)
                      || |||+|||+||||++||++|+++|+||+|||+.+.+||||+|+||||||+|+++++.+.... ..+..+|++. .+.+
T Consensus         1 M~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPsK~Ll~~a~~~~~~~~~~~~~~g~~~-~~~~   79 (466)
T PRK06115          1 MKSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTL   79 (466)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-CCCC
T ss_conf             984698999978899999999997899399996799964652045756699999999999986344020387573-4625


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999999999877777876400431011001110022210235752-11232210000467665244457665321
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      ||++++++++..++.+.++++.+++..+|++++|+|+|.+++++.|...+ ++++++++++||||||+|+.+|+.+  .+
T Consensus        80 d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iiIATGs~P~~~pg~~--~d  157 (466)
T PRK06115         80 NLAQMMKQKDESVTALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVT--ID  157 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC--CC
T ss_conf             8999999999999999999999986189479952599954994189858997799995689999899876999756--59


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             00245305741111113332101234454332013220122011100001112212222112222222222222322002
Q gi|254781053|r  158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK  237 (466)
Q Consensus       158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~  237 (466)
                      +..++||+++++++++|++++|||||+||+|||++|++||++||++++++++||.+|+++++.+++.|+++||+++++++
T Consensus       158 ~~~~~ts~~~~~l~~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~lL~~~D~~~~~~l~~~l~~~gi~i~~~~~  237 (466)
T PRK06115        158 NQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDGETAKTLQKALAKQGMRFKLGSK  237 (466)
T ss_pred             CCEEECCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCE
T ss_conf             95697152400354489679999585899999999986198478998334214343412368888899876949995898


Q ss_pred             HHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC
Q ss_conf             344201468721699972-1332110000023204531210367840000126764223337763330268487024333
Q gi|254781053|r  238 VSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR  316 (466)
Q Consensus       238 v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g  316 (466)
                      +++++..+++..+.+... +++.+++++|.||+|+||+||++.|+|+++|++++++| |.||+++|||+|||||+|||++
T Consensus       238 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gv~~~~~g-i~vd~~~~Ts~~~IyA~GDv~g  316 (466)
T PRK06115        238 VTQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQGLGLESVGLETDKRG-MLANEHHRTSVPGVWVIGDVTS  316 (466)
T ss_pred             EEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEECCCC
T ss_conf             999998499699999975588504897169999416765776567200287217997-7837765447887798423789


Q ss_pred             CCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEE
Q ss_conf             54344300012320120111222222233332210001445510014788862346658999960447034418898338
Q gi|254781053|r  317 GPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGF  396 (466)
Q Consensus       317 ~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~  396 (466)
                      .|+|+|+|.+||+++++++++++.++||+.+|++|||+||+|+||+||+||++++++|++.+++|+.++|++.+++++||
T Consensus       317 ~~~l~h~A~~eg~~~~~~i~g~~~~~~~~~vP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~  396 (466)
T PRK06115        317 GPMLAHKAEDEAVACIERIAGKAHEVNYNLIPGVIYTRPEVASVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGF  396 (466)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEE
T ss_conf             86770589999999999975999765668788899756867988898999987699889999987767456546998379


Q ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  397 VKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       397 ~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      +||++|++|++|||+|++|++|+||||.+++||++++|++||.+++|+|||++|++++||+++++|+||.
T Consensus       397 vKlv~d~~~g~ILGa~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~i~~aa~~~~g~~~h~  466 (466)
T PRK06115        397 AKVLADARTDEVLGVHLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVDGMAMQI  466 (466)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999979799999989999999999999998879799995267789877999999998545986659


No 3  
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=868.40  Aligned_cols=460  Identities=47%  Similarity=0.755  Sum_probs=436.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
Q ss_conf             93319999898668999999998799399993799715025136673709899999999999986675581647753289
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL   80 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~   80 (466)
                      |-|||+|||+||||++||.+++++|++|+|||++. +||||+|+||||||+|+++++.++.. +....+|+......+||
T Consensus         3 ~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~-~~~~~~Gi~~~~~~~d~   80 (462)
T PRK06416          3 FDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERYREA-RHSEDFGIKAENVGFDF   80 (462)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCEEEECCHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCH
T ss_conf             77998999988899999999996899399996799-78620416705069999999999999-87762681267764089


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             99999999999987777787640043101100111002221023575211232210000467665244457665321002
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV  160 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~  160 (466)
                      ++++++++.+++++.++++..+++.+|++++|+|+|++++++.|...+++++|+++++||||||+|+.+|+.+  .++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~a~~iIIATGs~P~~~pg~~--~~~~~  158 (462)
T PRK06416         81 KKVQEWKNGVVARLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVKGEDGEQTYTAKNIILATGSRPRELPGIE--FDGKR  158 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCEEEEECEEEECCCCCCCCCCCCC--CCCCE
T ss_conf             9999999999999878899999877978998389981276045553699669994869999899887799978--78955


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             45305741111113332101234454332013220122011100001112212222112222222222222322002344
Q gi|254781053|r  161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      ++||+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|++.||++++++++++
T Consensus       159 v~ts~~~~~l~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gi~i~~~~~v~~  238 (462)
T PRK06416        159 VITSDEALNLDEVPKSLVVIGGGYIGIEFASAYASLGAEVTIIEALPRILPGFDKEISKLAERALKKRGIKIVTGAMAKK  238 (462)
T ss_pred             EEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEE
T ss_conf             98416645765479769998897878899999997397689974054323345746668999999964985144846999


Q ss_pred             HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC
Q ss_conf             20146872169997213321100000232045312103678400001267642233377633302684870243335434
Q gi|254781053|r  241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML  320 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l  320 (466)
                      ++..+++..+.+.+ +++..++++|.||+|+||+||++.|+|+++|++++ +|+|.||++||||+|||||+|||+++|+|
T Consensus       239 i~~~~~~~~v~~~~-~~~~~~i~~d~vl~a~Gr~Pn~~~L~L~~~gv~~d-~G~I~vd~~~~Ts~~~IyA~GDv~g~~~l  316 (462)
T PRK06416        239 VEQTDDGVTVTLEA-GGEEETIEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIPVDEQMRTNVPNIYAIGDVVGGPML  316 (462)
T ss_pred             EEECCCEEEEEEEC-CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf             99729989999953-98589996329999966401644347430255525-79700566632599745871466788776


Q ss_pred             CCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEE
Q ss_conf             43000123201201112222222333322100014455100147888623466589999604470344188983389999
Q gi|254781053|r  321 AHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKIL  400 (466)
Q Consensus       321 ~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli  400 (466)
                      +|+|.+||+++++|+++++.++||..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++++++++||+|++
T Consensus       317 ~~~A~~eg~~a~~ni~g~~~~~~~~~iP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv  396 (462)
T PRK06416        317 AHKASAEGKIAAEAIAGHPHPVDYRSIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVRFPFAGNGKALALGETDGFVKLI  396 (462)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEE
T ss_conf             58999999999998759995444445712002576369875889999975997799999888673566569985799999


Q ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  401 ANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       401 ~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      +|++|++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|+|++||+++.+||+|-
T Consensus       397 ~d~~~~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~g~~~h~  462 (462)
T PRK06416        397 FDKKTGELLGAHMVGAEASELIQEAQLAINLEATVEDLALTIHPHPTLSEALMEAALAAAGRPLHA  462 (462)
T ss_pred             EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999989799999988999999999999998849899994178779888999999999864998889


No 4  
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00  E-value=0  Score=865.95  Aligned_cols=452  Identities=29%  Similarity=0.467  Sum_probs=413.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      |||+|||+||||++||++|+++|+||+|||++ .+||||+|+||||||+|++++++.+...+....+|+....+.+||.+
T Consensus        99 yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~-~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~~~~Gi~~~~~~vd~~~  177 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATAPTIDRSK  177 (561)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHH
T ss_conf             76899895889999999999789979999479-96886656760448999999999999974501477116775467999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999998777-77876400-431011001110022210235752-1123221000046766524445766532100
Q gi|254781053|r   83 MMSYKKSIVESNTQ-GINFLLKK-NKIITYHGSARIVSNNKILVKGSS-SEETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        83 ~~~~~~~~v~~~~~-~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      ++++++..++.++. .++.+++. .+|++++|+|+|+++++|.|...+ ++++++++++||||||+|+.+|..  ..++.
T Consensus       178 ~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~P~ip--Gl~~~  255 (561)
T PRK13748        178 LLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIP--GLKET  255 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCC--CCCCC
T ss_conf             9999999999987446889974379849998499995398899993589648994186999478876678888--76778


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             24530574111111333210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      .++||+++|+++++|+|++|||||+||+|||++|++||++||+++|+ ++|+.+|+++++.+.+.|+++||+++++++++
T Consensus       256 ~~lTSd~~l~l~~lP~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r~-~ll~~~D~ei~~~l~~~l~~~GI~i~~~~~v~  334 (561)
T PRK13748        256 PYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQAS  334 (561)
T ss_pred             CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf             62774564074438873899898689999999998649848999657-65676499999999999997697997697899


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      +++..+++..+.  ..++   ++++|.||+|+||+||+++|+||++||++|++|+|.||++||||+|||||+|||++.|+
T Consensus       335 ~v~~~~~~~~v~--~~~g---~i~~d~vLvA~GR~PNt~~LgLe~~GV~~d~~G~I~Vd~~~rTs~p~IYA~GDv~g~~~  409 (561)
T PRK13748        335 QVAHDDGEFVLT--TNHG---ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ  409 (561)
T ss_pred             EEEECCCEEEEE--ECCC---EEEECEEEEECCCEEECCCCCHHHCCCEECCCCCEECCCCCCCCCCCEEEEECCCCCCC
T ss_conf             999729989999--6896---69857899960610345442515428714689987248874307862999610167875


Q ss_pred             CCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE
Q ss_conf             44300012320120111222222233332210001445510014788862346658999960447034418898338999
Q gi|254781053|r  320 LAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI  399 (466)
Q Consensus       320 l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl  399 (466)
                      |+|+|.+||+++++|+++.+.++||..+|+++||+||+|+|||||+||+++|+++++.+++|+.++|++++++++||+|+
T Consensus       410 Lah~A~~eG~~aa~ni~g~~~~~d~~~vP~vvFT~PeiA~VGlTE~eA~~~g~~~~~~~~~~~~~~rA~~~~~~~GfvKl  489 (561)
T PRK13748        410 FVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKL  489 (561)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEE
T ss_conf             56899999999999861999545478677499813750778888999987599558999956768268766898579999


Q ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             99789986999999829988999999999987898789963784377889999999998608977
Q gi|254781053|r  400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPI  464 (466)
Q Consensus       400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~  464 (466)
                      ++|+++++|||+|++|++|+||||.+++||++++|++||.+++|+|||++|+|++||. .|.|++
T Consensus       490 v~d~~tg~ILGahivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~hPT~sE~lk~AAq-~f~kdv  553 (561)
T PRK13748        490 VAEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ-TFNKDV  553 (561)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH-HHCCCC
T ss_conf             9999989599999987998999999999998789899993288779887999999999-860682


No 5  
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=857.17  Aligned_cols=462  Identities=39%  Similarity=0.611  Sum_probs=438.5

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             93--3199998986689999999987993999937997150251366737098999999999999866755816477532
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |.  ||||||||||||++||.+++++|++|+|||+.+.+||||+|+||||||+|+++++.+... +.+..+|+....+.+
T Consensus         1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~-~~~~~~Gi~~~~~~~   79 (472)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEA-KALAEHGIVFGEPKI   79 (472)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCC
T ss_conf             9977878999988899999999997899699996379976561235803229999999999998-676745772588742


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             8999999999999987777787640043101100111002221023575211-232210000467665244457665321
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      ||++++++++.+++.+.+++..+++..+|++++|+++|++++++.|.+.++. ++++++++||||||+|..+|..+  .+
T Consensus        80 d~~~~~~~~~~~v~~l~~~~~~~~~~~gV~~i~G~a~f~~~~~v~v~~~~g~~~~l~a~~ivIATGs~p~~~p~~~--~~  157 (472)
T PRK06467         80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTVEVTGEDGKTEVIEFDNAIIAAGSRPIQLPFIP--HE  157 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCC--CC
T ss_conf             7999999999999999889999998779569715067548980364338886489987799994699665689988--78


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             00245305741111113332101234454332013220122011100001112212222112222222222222322002
Q gi|254781053|r  158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK  237 (466)
Q Consensus       158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~  237 (466)
                      +..+++|+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|+++ +++++++.
T Consensus       158 ~~~~~ts~~~l~l~~~P~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~~~~~l~~~-i~i~~~~~  236 (472)
T PRK06467        158 DPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRISKQ-FNIMLETK  236 (472)
T ss_pred             CCEEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEECCE
T ss_conf             87588236651101399559999564728999999985298689996045545434999999999999857-80996447


Q ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC
Q ss_conf             34420146872169997213321100000232045312103678400001267642233377633302684870243335
Q gi|254781053|r  238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG  317 (466)
Q Consensus       238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~  317 (466)
                      +++++..+++..+.+...++...++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||++.
T Consensus       237 v~~~~~~~~~~~v~~~~~~~~~~~~~~D~vlva~Gr~Pn~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~  316 (472)
T PRK06467        237 VTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQ  316 (472)
T ss_pred             EEEEEEECCEEEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             99999939969999980898706998368999078610123457755687317999872499753588635861124688


Q ss_pred             CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE
Q ss_conf             43443000123201201112222222333322100014455100147888623466589999604470344188983389
Q gi|254781053|r  318 PMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV  397 (466)
Q Consensus       318 ~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~  397 (466)
                      ++|+|+|.+||+++++++++++.++||..+|+++||+||+|+||+||+||+++|++|++.+++|+.++|++..++++||+
T Consensus       317 ~~lah~A~~qg~~aa~~i~g~~~~~~~~~vP~~vft~Peia~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~  396 (472)
T PRK06467        317 PMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMT  396 (472)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEE
T ss_conf             77667999999999998669996556665415998155358863889999876998899999787560454379985799


Q ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             999978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      ||++|++|++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||++++||+.+.++++|+
T Consensus       397 Kli~~~~~~~iLGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~i~~Aa~~~~g~~~~~  465 (472)
T PRK06467        397 KLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAVEGSITDL  465 (472)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999999989799999988999999999999998869899994078779888999999999866994337


No 6  
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=100.00  E-value=0  Score=861.63  Aligned_cols=462  Identities=34%  Similarity=0.545  Sum_probs=429.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             31999989866899999999879---939999379971502513667370989999999999998667558164775328
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      ||++|||+|.|+++||+++++.|   .||+|||++. +||||+|+||||||.|+++++..+...+...++|+....+.+|
T Consensus         1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~-~GGTCVNVGCVPSK~llraa~~~~~a~~~~~f~g~~~~~~~v~   79 (494)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGP-LGGTCVNVGCVPSKILLRAAEVAHYARKPPFFVGLLAATVEVD   79 (494)
T ss_pred             CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCC-CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             918998276899999999985488715999963789-7761585232745899999988767634777777535434423


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHCC-CEEEEEEEEEECCCCCCCCCCCCCCCCCCCEE-ECCCCCCCC--CCCCCCCC
Q ss_conf             99999999999998777-778764004-31011001110022210235752112322100-004676652--44457665
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQ-GINFLLKKN-KIITYHGSARIVSNNKILVKGSSSEETIEAKN-IVIATGSEA--SGLPGMSI  154 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~-~~~~~~~~~-~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~-iviATGs~p--~~iP~~~~  154 (466)
                      +.+++++++++++.+++ -|..+++.. +|++++|+|+|.|+++|+|+..+|.+.+.+++ +||||||+|  |+|||+..
T Consensus        80 ~~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~F~d~~~V~v~~~~GG~~~~~~k~~lIATGa~P~~P~IPGLke  159 (494)
T TIGR02053        80 FEELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRARFKDPKTVKVDLAEGGREVVGAKRFLIATGARPAVPPIPGLKE  159 (494)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf             89999998899999877678999851798679986799847878997278885004213866896467788744678004


Q ss_pred             CCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             32100245305741111113--33210123445433201322012201110000111221222211222222222-2222
Q gi|254781053|r  155 DFDEQVIVSSTGALSFSSVP--KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMN  231 (466)
Q Consensus       155 ~~~~~~~~t~~~~~~l~~~P--~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~  231 (466)
                      ......+|||+++|.+++.|  +||+|||||+||+|+||+|+|||++|+|++|++++|+++||++++.+++.|++ +||+
T Consensus       160 ~~~~G~ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~~V~~~l~~eeGi~  239 (494)
T TIGR02053       160 ADKAGRYLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISAAVEEALAEEEGIE  239 (494)
T ss_pred             HHHCCCEECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             53368432137772568799704688886528999999999857761403679986446468889999999841478779


Q ss_pred             CCCCH-HHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCC-CEEEECCCCCCCCCCCCCCCEEECCCCE
Q ss_conf             32200-234420146872169997213321100000232045312103678-4000012676422333776333026848
Q gi|254781053|r  232 FQLNS-KVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLG-LEEIGINIDHRGCIEIGGQFQTSISTIY  309 (466)
Q Consensus       232 i~~~~-~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~-Le~~gi~~~~~G~I~vd~~~~Ts~p~Iy  309 (466)
                      +++.+ ++++++..+++......++++...++++|.+|+||||+||+++|| |+++|+++|++|.|.||++||||+|+||
T Consensus       240 ~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~gL~GLe~~GVk~~~~G~I~Vde~lrTsnp~iY  319 (494)
T TIGR02053       240 VVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPNTDGLNGLEKAGVKLDERGGILVDERLRTSNPGIY  319 (494)
T ss_pred             EEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCEE
T ss_conf             98044035544452798189998558987457431125552787566667742345834668854787262035877724


Q ss_pred             EECCCCCC-CC----CCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECC
Q ss_conf             70243335-43----443000123201201112-2222223333221000144551001478886234665899996044
Q gi|254781053|r  310 AIGDVVRG-PM----LAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSA  383 (466)
Q Consensus       310 A~GDv~g~-~~----l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~  383 (466)
                      |+|||+++ |+    |.++|.+||.+||.|+++ ...++||..+|.+|||+|++|+|||||+||++.|+.+++-..++++
T Consensus       320 AAGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT~P~~AsVGLtE~ea~~~G~~~~~R~~~~~~  399 (494)
T TIGR02053       320 AAGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFTDPAVASVGLTEAEAQKAGIEVDSRTLPLEA  399 (494)
T ss_pred             EEECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEECCCCEEECCCCHHHHHHCCCCEEEEEEEHHH
T ss_conf             62022378746523577787505804520101798815540218836976887121357589898559704566653403


Q ss_pred             CCHHHHCCCCCEEEEEEEECCCCEE-------EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             7034418898338999997899869-------999998299889999999999878987899637843778899999999
Q gi|254781053|r  384 NGRARSMNSIDGFVKILANEKSDRV-------EGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA  456 (466)
Q Consensus       384 ~~ra~~~~~~~g~~kli~~~~~~~i-------lG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa  456 (466)
                      .||++++++++||+||++|+.|+||       ||+|+|+|+|+|+||..++||+.||||+||.+++|+|||++|+|+.||
T Consensus       400 VPra~~~r~t~G~iKlva~~~T~K~svkrGkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt~h~fpT~~EgLKLAA  479 (494)
T TIGR02053       400 VPRARINRETRGFIKLVADPGTGKVSVKRGKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDTLHPFPTMAEGLKLAA  479 (494)
T ss_pred             HHHHHHCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             68898578996148999737873587641427787752311788999999999807837788731154566789999998


Q ss_pred             HHHCCCCCCC
Q ss_conf             9860897749
Q gi|254781053|r  457 LSCFDQPIHM  466 (466)
Q Consensus       457 ~~~~~~~~~~  466 (466)
                      + .|.|+|.+
T Consensus       480 l-~F~~Dv~k  488 (494)
T TIGR02053       480 L-TFYRDVSK  488 (494)
T ss_pred             H-HHCCCCCC
T ss_conf             5-22046111


No 7  
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00  E-value=0  Score=849.47  Aligned_cols=462  Identities=52%  Similarity=0.853  Sum_probs=438.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC------CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC
Q ss_conf             33199998986689999999987993999937------997150251366737098999999999999866755816477
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK------EKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIAS   75 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~------~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~   75 (466)
                      +|||+||||||||++||++|+++|++|+|||+      .+.+||||+|+||||||+|+++++.+....+.+..+|++...
T Consensus         4 ~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPsK~L~~~a~~~~~~~~~~~~~Gi~~~~   83 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGISVDG   83 (475)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCC
T ss_conf             18899999888999999999978991999972577677888801447277013099999999999998789865841467


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             53289999999999999877777876400431011001110022----21023575211232210000467665244457
Q gi|254781053|r   76 CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSN----NKILVKGSSSEETIEAKNIVIATGSEASGLPG  151 (466)
Q Consensus        76 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~----~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~  151 (466)
                      +.+||++++++++.+++.++++++..++.++|++++|+|+|+++    +++.+.+.+ .++++++++||||||+|+.+|+
T Consensus        84 ~~~d~~~~~~~k~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~~~~~v~v~~~~-~~~i~a~~iiIATGs~p~~lp~  162 (475)
T PRK06327         84 VKIDVAKMIGRKDTVVKQMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVKGEG-ETVVKAKNVIIATGSEPRHLPG  162 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCC-CCEEEECEEEECCCCCCCCCCC
T ss_conf             630799999999999999888999998716938999999996147884599983898-5099968799978996666998


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66532100245305741111113332101234454332013220122011100001112212222112222222222222
Q gi|254781053|r  152 MSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN  231 (466)
Q Consensus       152 ~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~  231 (466)
                      ++  +++..++|++++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|++.||+
T Consensus       163 ~~--~~~~~~~ts~~~~~l~~~Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        163 VP--FDNEIILDNEGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEALKAFTKQGLD  240 (475)
T ss_pred             CC--CCCCEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             88--7874387367651613389679999674758999999995498599998536433445878899999988736929


Q ss_pred             CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE
Q ss_conf             32200234420146872169997213321100000232045312103678400001267642233377633302684870
Q gi|254781053|r  232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI  311 (466)
Q Consensus       232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~  311 (466)
                      +++++++++++..+++..+.+.+.+++..++++|.||+++||+||++.|+|+++||++|++|+|.||++||||+|||||+
T Consensus       241 i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~L~l~~~Gv~l~~~G~I~vd~~~~Ts~p~IyA~  320 (475)
T PRK06327        241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAI  320 (475)
T ss_pred             EEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf             97088999999548739999993899879999819999326361454558621387447899865699754699753871


Q ss_pred             CCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCC
Q ss_conf             24333543443000123201201112222222333322100014455100147888623466589999604470344188
Q gi|254781053|r  312 GDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMN  391 (466)
Q Consensus       312 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~  391 (466)
                      |||+++|+|+|+|.+||+++++|+++++.++||..+|++|||+||+|+||+||+||+++|++|++.+++|+.++|++..+
T Consensus       321 GDv~g~~~l~~~A~~eg~~a~~~~~g~~~~~~~~~vP~~vft~Peia~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~  400 (475)
T PRK06327        321 GDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMG  400 (475)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCC
T ss_conf             01478877755999999999998669997665676614884377678665889999876998899999777662430158


Q ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             983389999978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  392 SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       392 ~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      +++||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|++++||+++.+||||.
T Consensus       401 ~~~G~~klv~~~~~~~IlG~~~vg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPT~~E~~~~Aa~~~~~~~~~~  475 (475)
T PRK06327        401 EPDGFVKVIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRALHF  475 (475)
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             984899999999989799999989999999999999998889899994077779888999999999755998889


No 8  
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=849.44  Aligned_cols=461  Identities=37%  Similarity=0.602  Sum_probs=431.6

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             93--3199998986689999999987993999937997150251366737098999999999999866755816477532
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |+  |||+||||||||++||++|+++|+||+|||++ .+||||+|+||||||+|++.+++.+.+.+....+|+. .+..+
T Consensus         1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~gi~-~~~~~   78 (467)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTF   78 (467)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCC
T ss_conf             985687899997889999999999789909999489-9687506176011399999999999999788867977-42416


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             8999999999999987777787640043101100111002221023575-211232210000467665244457665321
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGS-SSEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~-~~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      ||..++++++.+++....+++..+++.+|++++|+|+|++++++.|... ++.++++++++||||||+|+.+|+.+.   
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~~i~a~~iiIATGs~p~~lPg~~~---  155 (467)
T PRK07818         79 DYGAAFDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSL---  155 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC---
T ss_conf             89999999999999987569999986793999430798248513897178962799952689876887665788678---


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             00245305741111113332101234454332013220122011100001112212222112222222222222322002
Q gi|254781053|r  158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK  237 (466)
Q Consensus       158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~  237 (466)
                      ...++++++.+.++++|+|++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|++.||+++++++
T Consensus       156 ~~~~~~~~~~~~~~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l~~~Gi~i~~~~~  235 (467)
T PRK07818        156 SENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQYKKLGVKILTGTK  235 (467)
T ss_pred             CCCEEEEHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCE
T ss_conf             88778535772334589669999987999999999983298777762113135442267899999999866988855976


Q ss_pred             HHHHHCCCCCCEEEEEEEC-CCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC
Q ss_conf             3442014687216999721-332110000023204531210367840000126764223337763330268487024333
Q gi|254781053|r  238 VSSVKKVKGKAQVVYRSTD-DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR  316 (466)
Q Consensus       238 v~~i~~~~~~~~v~~~~~~-g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g  316 (466)
                      +++++..+++..+++...+ ++.+++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||+|
T Consensus       236 v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~~L~L~~~gv~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g  315 (467)
T PRK07818        236 VESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVEGYGLEKTGVALTDRGAIGIDDYMRTNVPHIYAIGDVTA  315 (467)
T ss_pred             EEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCEEEEEECCCC
T ss_conf             89999849939999998889946999952589811675044434641355478799858689988647873999722688


Q ss_pred             CCCCCCEECCCCCCEEECCCCCCCC--CCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCC
Q ss_conf             5434430001232012011122222--22333322100014455100147888623466589999604470344188983
Q gi|254781053|r  317 GPMLAHKAEDEGIAVAEIISGQKGH--VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSID  394 (466)
Q Consensus       317 ~~~l~~~A~~~g~~aa~~i~~~~~~--~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~  394 (466)
                      +++|+|+|.+||+++++|+++.+..  .||+.+|+++||+||+|+||+||+||+++|+++++.+++|+.++|++..++++
T Consensus       316 ~~~Lah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~~~~~~~~~~~~~~ra~~~~~~~  395 (467)
T PRK07818        316 KLQLAHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPS  395 (467)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCC
T ss_conf             87871489999999999865999863345566654997578769973899999864998899998567477777568985


Q ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             389999978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  395 GFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       395 g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      ||+||++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||++|++++||+++.+++||.
T Consensus       396 G~vKlv~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A~~~~~g~~~~~  467 (467)
T PRK07818        396 GFVKLVADAKYGELLGGHLVGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALQEAFHGLAGHMINF  467 (467)
T ss_pred             EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             799999999989699999988999999999999998839899994067789887999999999751788789


No 9  
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00  E-value=0  Score=850.05  Aligned_cols=451  Identities=48%  Similarity=0.758  Sum_probs=421.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
Q ss_conf             93319999898668999999998799399993799715025136673709899999999999986675581647753289
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL   80 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~   80 (466)
                      |+||+||||+||||+.||.+|+++|++|++||+.+.+||||+|+||||||+|+++++.+..+.+....+|++.....+||
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~d~   82 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF   82 (454)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCH
T ss_conf             51548998977779999999996799779993069867655746731449999999999998641423652057785389


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             99999999999987777787640043101100111002221023575211232210000467665244457665321002
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV  160 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~  160 (466)
                      ++++++++.+++.+..+++.+++.++|++++|+|+|+++++|.|.+. +.++++++++||||||+|+.+|...  .++..
T Consensus        83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~~~~~a~~iiIATGS~p~~~~~~~--~~~~~  159 (454)
T COG1249          83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DKETITADNIIIATGSRPRIPPGPG--IDGAR  159 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECC-CCEEEEECEEEEECCCCCCCCCCCC--CCCCE
T ss_conf             99999999999987677999997489889998999888998999068-7549982789990699877899889--88874


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             45305741111113332101234454332013220122011100001112212222112222222222222322002344
Q gi|254781053|r  161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      +++|++++.+.++|+|++|||||+||+|||++|++||++||++++++++||.+|+++++.+.+.|++.|+++++++++++
T Consensus       160 ~~~s~~~l~~~~lP~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~  239 (454)
T COG1249         160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA  239 (454)
T ss_pred             EEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEE
T ss_conf             88353413601079879998988899999999998699789994688778877999999999999858959983536999


Q ss_pred             HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC
Q ss_conf             20146872169997213321100000232045312103678400001267642233377633302684870243335434
Q gi|254781053|r  241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML  320 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l  320 (466)
                      ++..++++.+.+.+  ++..++++|.+|+|+||+||+++|+||++|++++++|+|.||+++|||+|||||+|||+++++|
T Consensus       240 ~~~~~~~v~v~~~~--g~~~~~~ad~vL~AiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~L  317 (454)
T COG1249         240 VEKKDDGVLVTLED--GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPML  317 (454)
T ss_pred             EEECCCEEEEEEEC--CCCCEEEEEEEEEEECCCCCCCCCCCHHCCCEECCCCCEEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf             98169808999946--9776799849999327866888878053291467999887689504389998984515899775


Q ss_pred             CCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE
Q ss_conf             43000123201201112-22222233332210001445510014788862346658999960447034418898338999
Q gi|254781053|r  321 AHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI  399 (466)
Q Consensus       321 ~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl  399 (466)
                      +|+|.+||++|++|+++ +..++||..+|+++||+||+|+||+||+||+++++++++++++|+.++|+..+++++||+|+
T Consensus       318 ah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Kl  397 (454)
T COG1249         318 AHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKL  397 (454)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEE
T ss_conf             67899989999999707997767746799699677975996089999986389759999435763377764687727999


Q ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             997899869999998299889999999999878987899637843778899999999
Q gi|254781053|r  400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAA  456 (466)
Q Consensus       400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa  456 (466)
                      ++|+++++|||+|++|++|+||||.+++||++++|++++.+++|+|||++|.+++|+
T Consensus       398 v~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~  454 (454)
T COG1249         398 VVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA  454 (454)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
T ss_conf             997899919999998999899999999999879918998357767998469899659


No 10 
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00  E-value=0  Score=845.69  Aligned_cols=457  Identities=42%  Similarity=0.687  Sum_probs=427.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH--HHHCCEECCCCCCCH
Q ss_conf             319999898668999999998799399993799715025136673709899999999999986--675581647753289
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKE--AGDLGINIASCHLDL   80 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~--~~~~g~~~~~~~~d~   80 (466)
                      |||+|||+||||++||++|+++|++|+|||++. +||||+|+||||||+|++.++.+....+.  ...+|+....+.+||
T Consensus         5 YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~~~gi~~~~~~~d~   83 (464)
T PRK05976          5 YDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALIHSAEVFHTAKKFAGASPLGISVQAPALDF   83 (464)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCH
T ss_conf             889999978899999999997899299997899-7971363683147999999999999865211100535456765389


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             9999999999998777778764004310110011100222102357521-123221000046766524445766532100
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      .+++++++.+++++...++.+++..+|++++|+++|++++++.|...++ .++++++++||||||+|+.+|+.+.  ++ 
T Consensus        84 ~~~~~~~~~~~~~l~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~--~~-  160 (464)
T PRK05976         84 AKVQAWKDGIVDRLTKGVAALLKKGKVDVFHGIGRILDGKTVSVETATGENEMIIPENLLIATGSRPVELPGLPF--GG-  160 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECEEEECCCCCCCCCCCCCC--CC-
T ss_conf             999999999999987889999986892899726886589811444278873699826699876888616997657--76-


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             24530574111111333210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      .++||+++++++++|++++|||||+||+|+|++|++||++||++++++++|+.+|+++++.+++.|+++||+++++++++
T Consensus       161 ~~~ts~~~~~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~~l~~~gi~i~~~~~v~  240 (464)
T PRK05976        161 EVISSTEALSLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVARLLKKLGVRVLTGAKVL  240 (464)
T ss_pred             CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf             67820463173548955999899689999999999539869999853655433388899999999997697998088899


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      +++..++...+  ...+|+..++++|.||+|+||+||++.|+|+++|++++ +|+|.||++||||+|||||+|||+|.|+
T Consensus       241 ~~~~~~~~~~~--~~~~g~~~~i~~D~vl~a~Gr~Pn~~~l~l~~~gv~~~-~g~I~Vd~~~~Ts~~~IyA~GDv~g~~~  317 (464)
T PRK05976        241 GLTLDGGVLIV--AEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDLDVE-GGFIRIDDFCQTSMRHIYAIGDVIGEPM  317 (464)
T ss_pred             EEEECCCEEEE--EECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCEEEC-CCCEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf             99943998999--98289779998368999148755635577322776621-7836246765358871999605689877


Q ss_pred             CCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEE
Q ss_conf             44300012320120111222222233332210001445510014788862346658999960447034418898338999
Q gi|254781053|r  320 LAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKI  399 (466)
Q Consensus       320 l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kl  399 (466)
                      |+|+|.+||+++++|+++.+.++++..+|+++||+||+|+||+||+||++++++|++.+++|++++|++..++++||+||
T Consensus       318 l~~~A~~~g~~a~~~~~g~~~~~~~~~ip~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~iKl  397 (464)
T PRK05976        318 LAHRAMAQGEMVAEHIAGKKREPIDYAIVAVCFTDPEVVSVGLTPDEAKEAGYDVKVGKFPFAANGRALTYGESDGFVRV  397 (464)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEE
T ss_conf             73289999999999865999743345566030237536886488999987699889999976767111015898389999


Q ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             9978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  400 LANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       400 i~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      ++|+++++|||+|++|++|+||||.+++||++++|+++|++++|+|||++|++++||++++++++|.
T Consensus       398 i~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~~~~~~~h~  464 (464)
T PRK05976        398 VARRDTHDILGVQAVGPHVSELISEFALALEMGARLEDVAGTIHAHPTLSEAVGEAALAALGHALHI  464 (464)
T ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             9999989899999989999999999999998799899992177779878999999999855998779


No 11 
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00  E-value=0  Score=845.92  Aligned_cols=456  Identities=32%  Similarity=0.485  Sum_probs=421.8

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             93-31999989866899999999879939999379971502513667370989999999999998667558164775328
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      |+ |||+||||||||++||.+|+++|+||+|||+.+.+||+|+|+||||||+|++++..+....+ ...++.......+|
T Consensus         4 m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~-~~~~~~~~~~~~~~   82 (465)
T PRK05249          4 MYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQ-NPLYRDYRVKLRIT   82 (465)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC
T ss_conf             77789899997789999999999789929999769997665344461767999999999999875-54246556668628


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999998777778764004310110011100222102357521-12322100004676652444576653210
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLPGMSIDFDE  158 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP~~~~~~~~  158 (466)
                      |++++++++.++++..+.++..+++++|++++|.|+|++++++.|...++ .++++++++||||||+|+.+|+.  ++++
T Consensus        83 ~~~~~~~~~~~v~~~~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~dg~~~~i~a~~iIIATGs~p~~p~~~--~~~~  160 (465)
T PRK05249         83 FADLLARADRVINKQVEVRRGFYARNRVEVIQGRASFVDPHTVEVECPDGSVETLTAEKIVIATGSRPYRPDDV--DFDH  160 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCC--CCCC
T ss_conf             99999999999988878999999868978998478972798404434899628998427999537524567878--9898


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             02453057411111133321012344543320132201220111000011122122221122222222222223220023
Q gi|254781053|r  159 QVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV  238 (466)
Q Consensus       159 ~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v  238 (466)
                      ..+++|+++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+.+.|+++||++++++++
T Consensus       161 ~~v~~sd~~l~l~~~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ll~~~d~~~~~~l~~~l~~~gI~i~~~~~v  240 (465)
T PRK05249        161 PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRLLSFLDDEISDALSYHFRNSGVVIRHNEEY  240 (465)
T ss_pred             CEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEECCEE
T ss_conf             72883678543300797599999982179999999960987789721660002218999999999999879299979889


Q ss_pred             HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC
Q ss_conf             44201468721699972133211000002320453121036784000012676422333776333026848702433354
Q gi|254781053|r  239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP  318 (466)
Q Consensus       239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~  318 (466)
                      ++++..+++..+.+.  +|  .++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|+|
T Consensus       241 ~~i~~~~~~~~v~~~--~g--~~i~~D~Vl~a~Gr~pn~~~L~Le~~Gv~~d~rG~I~VD~~~~Ts~p~IyA~GDv~g~~  316 (465)
T PRK05249        241 EKVEGGDDGVILHLK--SG--KKIKADCLLYANGRTGNTDGLNLENIGLEADSRGQLKVNSNYQTAVPHIYAVGDVIGFP  316 (465)
T ss_pred             EEEEEECCEEEEEEC--CC--CEEEEEEEEECCCCCCCCCCCCCHHCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCC
T ss_conf             999960876799947--99--59987089988766667665660425757899984837979877998707511257876


Q ss_pred             CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE
Q ss_conf             34430001232012011122222223333221000144551001478886234665899996044703441889833899
Q gi|254781053|r  319 MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK  398 (466)
Q Consensus       319 ~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k  398 (466)
                      +|+|+|.+||+++++|++|++.+.+|..+|++|||+||+|+||+||+||++++++|++++++|+.++|++..++++||+|
T Consensus       317 ~lah~A~~qg~~aa~~i~g~~~~~~~~~iP~~vft~PeiA~VG~te~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~GfvK  396 (465)
T PRK05249        317 SLASASMDQGRIAAQHAVGEATAHLVEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLK  396 (465)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEE
T ss_conf             77267899999999997499976554667616625774577508899999769987999998874767876689867999


Q ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99978998699999982998899999999998789---878996378437788999999999860897
Q gi|254781053|r  399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGG---SSEDLARICHAHPTMSEAVREAALSCFDQP  463 (466)
Q Consensus       399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~---t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~  463 (466)
                      +++|++|++|||+|++|++|+||||.++++|....   |+++|.+++|+|||+||++++||+++++|.
T Consensus       397 lv~~~~~~~IlG~~ivG~~A~elI~~~~~~~~~~~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a~~~~  464 (465)
T PRK05249        397 ILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAALDGLNRL  464 (465)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999989799999989987999999999999754316699994788869888999999999876065


No 12 
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00  E-value=0  Score=837.84  Aligned_cols=455  Identities=38%  Similarity=0.639  Sum_probs=427.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC--CCCCCCHH
Q ss_conf             1999989866899999999879939999379971502513667370989999999999998667558164--77532899
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI--ASCHLDLK   81 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~--~~~~~d~~   81 (466)
                      .|+|||+||||++||.+|+++|++|+|||+++ +||||+|+||||||+|+++++.+... +....||+..  ..+.+||+
T Consensus         2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~-~GGtCln~GCiPsK~ll~~a~~~~~~-~~~~~~Gi~~~~~~~~id~~   79 (458)
T PRK06912          2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDIV-RKANHYGITLNNGSISIDWK   79 (458)
T ss_pred             EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC-CCCEEEEECHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCHH
T ss_conf             49999008899999999997859599995899-78740336848789999999999999-76674595012787552899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999999877777876400431011001110022210235752112322100004676652444576653210024
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVI  161 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~~  161 (466)
                      +++++++.++..+.++++..++..+|++++|.|+|++++++.|.+.+++++++++++||||||+|..+|..  ++++..+
T Consensus        80 ~~~~~~~~~v~~~~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~i~a~~iiIATGs~P~~~p~~--~~d~~~~  157 (458)
T PRK06912         80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGGKEEVVDAEQFIIATGSEPTELPFA--PFDGKWI  157 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCC--CCCCCEE
T ss_conf             99999999999999999999973891899152798038868998699618997418999889877469978--8788769


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             53057411111133321012344543320132201220111000011122122221122222222222223220023442
Q gi|254781053|r  162 VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSV  241 (466)
Q Consensus       162 ~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i  241 (466)
                      ++|+++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++.++++
T Consensus       158 ~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi~i~~~~~v~~i  237 (458)
T PRK06912        158 LNSSHAMSLPSIPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGVEIFTGAALKGL  237 (458)
T ss_pred             EECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEE
T ss_conf             84655406122796599989974799999999965987999984466783056789999999998669599828879999


Q ss_pred             HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCC
Q ss_conf             01468721699972133211000002320453121036784000012676422333776333026848702433354344
Q gi|254781053|r  242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLA  321 (466)
Q Consensus       242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~  321 (466)
                      +..++...+  . .+++..++++|.||+|+||+||++.|+|+++|++++++| |.||++||||+|||||+|||++.++|+
T Consensus       238 ~~~~~~~~~--~-~~~~~~~~~~d~vl~a~Gr~Pn~~~l~l~~~gv~~~~~g-I~Vd~~~~Ts~p~IyA~GDv~g~~~l~  313 (458)
T PRK06912        238 NNYKKQASF--E-YEGSIQEVNPDFVLVAVGRKPRVQQLNLEKAGIQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA  313 (458)
T ss_pred             ECCCCEEEE--E-ECCCEEEEECCEEEEECCCCCCCCCCCHHHCCEEECCCC-EECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             866987999--9-589638996479999048766425567144183676995-474666676876499962378987773


Q ss_pred             CEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEE
Q ss_conf             30001232012011122222223333221000144551001478886234665899996044703441889833899999
Q gi|254781053|r  322 HKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILA  401 (466)
Q Consensus       322 ~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli~  401 (466)
                      |+|.+||+++++|++|++.+++|..+|+++||+||+|+|||||+||++++.++++.+++|++++|+.++++++||+||++
T Consensus       314 h~A~~~g~~aa~~~~g~~~~~~~~~vP~~ift~Peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~G~vKlv~  393 (458)
T PRK06912        314 HVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFSANGKALIIGEQTGKVKVIV  393 (458)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEE
T ss_conf             28999999999975799863124667359982666599858899998759986999997566703411699848999999


Q ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             78998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  402 NEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       402 ~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      |++|++|||+|++|++|+|+||.++++|++++|+++|++++|+|||++|++++|++++++|+||-
T Consensus       394 d~~~~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~A~~~a~g~~~h~  458 (458)
T PRK06912        394 EPKYQEIVGISIIGPHATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVHA  458 (458)
T ss_pred             ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             99989699999989999999999999998879899994167689875999999999864998899


No 13 
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00  E-value=0  Score=833.18  Aligned_cols=457  Identities=46%  Similarity=0.688  Sum_probs=421.8

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             93-31999989866899999999879939999379971502513667370989999999999998667558164775328
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      |+ |||+||||||||++||.+|+++|++|+|||+++ +||||+|+||||||+|+++++.+... +....+|+.. ...+|
T Consensus         1 M~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~gi~~-~~~i~   77 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP-LGGTCLNVGCMPSKALIAAAEAFHEA-KHAAKFGIHV-DPKID   77 (460)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCEEECHHHHHHHHHHHHHHHHH-HHHHHCCCCC-CCCCC
T ss_conf             981698999977899999999996979099995899-88610505715159999999999999-7534148666-78409


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999998777778-76400431011001110022210235752112322100004676652444576653210
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGIN-FLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE  158 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~  158 (466)
                      |++++++++..++.+...+. ...+..+|++++|.++|++++++.|.+   .+++++|++||||||+|+.+|+.. ..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~~~~~v~v~~---~~~i~a~~vIIATGs~~~~iPg~~-~~~~  153 (460)
T PRK06292         78 GKKVMARVRSERDRFVGGVVEGLEKKPKIDKIKGTARFIDPNTVEVGN---GEEIEAKNIVIATGSRPPVIPGSW-LILG  153 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECC---CEEEEECEEEEECCCCCCCCCCCC-CCCC
T ss_conf             999999999999998656899997338819998489963798899789---779961589996089999999841-2488


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             02453057411111133321012344543320132201220111000011122122221122222222222223220023
Q gi|254781053|r  159 QVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKV  238 (466)
Q Consensus       159 ~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v  238 (466)
                      ..++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++ |++++++++
T Consensus       154 ~~~~t~~~~~~~~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~~d~~~~~~~~~~l~~~-i~i~~~~~v  232 (460)
T PRK06292        154 DRLITSDDAFELDDLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLTDPEISDQAQKLLSKE-FKIKLGAKV  232 (460)
T ss_pred             CCEEECHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC-CEEEECCEE
T ss_conf             7289464453355588569999986788799999984698699996247543214999999999998609-889928779


Q ss_pred             HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC
Q ss_conf             44201468721699972133211000002320453121036784000012676422333776333026848702433354
Q gi|254781053|r  239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP  318 (466)
Q Consensus       239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~  318 (466)
                      ++++..+++..+....+ ++.+++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|++
T Consensus       233 ~~i~~~~~~~~v~~~~~-~~~~~i~~D~vl~aiG~~Pn~~~L~l~~~gi~ld~~G~I~VD~~~~Ts~p~IyA~GDv~g~~  311 (460)
T PRK06292        233 TSVERKGDKVEVEYEKG-GKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDPHTQTNVPGIYAAGDVNGGP  311 (460)
T ss_pred             EEEEECCCEEEEEEECC-CCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             99997599799999549-96289995289991375135556572311863179998814887302887358740357887


Q ss_pred             CCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE
Q ss_conf             344300012320120111222-2222333322100014455100147888623466589999604470344188983389
Q gi|254781053|r  319 MLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV  397 (466)
Q Consensus       319 ~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~  397 (466)
                      +|+|+|.+||+++++|+++.+ .+++|..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++..++++||+
T Consensus       312 ~la~~A~~qg~~a~~~i~~~~~~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G~i  391 (460)
T PRK06292        312 PLLHEAADEGIIAAENAAYPQVGPVDYRVIPSVVFTDPQIASVGKTEEELKAAGIDYVVGKVPFEAQGRARVMGKNDGFV  391 (460)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCCCEEE
T ss_conf             76789999999999997279984420035523786365279876889999876997799999878770211058983899


Q ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             999978998699999982998899999999998789878996378437788999999999860897749
Q gi|254781053|r  398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM  466 (466)
Q Consensus       398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~~~~  466 (466)
                      ||++|++|++|||+|++|++|+|+||.++++|++++|++||++++|+|||++|++++||+++.+|+||-
T Consensus       392 Kli~d~~~~~ilG~~ivg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPt~sE~~~~a~~~~~~~~~h~  460 (460)
T PRK06292        392 KVYADKKTGRLLGAHIIGPEAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLEEGLRTALRDLAAKLIHG  460 (460)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999799999989999999999999998859899994177779886999999999864788899


No 14 
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00  E-value=0  Score=832.97  Aligned_cols=454  Identities=29%  Similarity=0.473  Sum_probs=421.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC--CCCCC
Q ss_conf             3319999898668999999998799399993799715025136673709899999999999986675581647--75328
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA--SCHLD   79 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~--~~~~d   79 (466)
                      ||||+||||||||++||++|+++|++|+|||++. +||||+|+||||||+|+++++....+. ....+|++..  ...+|
T Consensus         1 M~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~-~GGtC~n~GCiPsK~Li~~a~~~~~~~-~~~~~G~~~~~~~~~~d   78 (467)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-VGGAAVLTDCVPSKTLIASAEVRTELR-RAADLGVRFDLEDAKVD   78 (467)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCEEECCCHHHHHHHHHHHHHHHHHH-HHHHCCEECCCCCCCCC
T ss_conf             9819998748899999999997879599996799-784676778366799999999999997-63525804478755506


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC------CCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             999999999999987777787640043101100111002------2210235752-112322100004676652444576
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS------NNKILVKGSS-SEETIEAKNIVIATGSEASGLPGM  152 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~------~~~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~  152 (466)
                      |++++++++.++.....++...++..+|++++|+|+|++      +++|.|...+ +.++++++++||||||+|+.+|+.
T Consensus        79 ~~~~~~r~~~~~~~~~~~~~~~l~~~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIATGs~P~~lp~~  158 (467)
T PRK07845         79 LPQVNARVKRLARAQSADIRAQLERAGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIATGASPRILPTA  158 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCC
T ss_conf             99999999999998666699998757968997389992066567787799993589758999296999589987779997


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65321002453057411111133321012344543320132201220111000011122122221122222222222223
Q gi|254781053|r  153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i  232 (466)
                      .  .++..++||+++++++++|++++|||||+||+|+|++|+++|++||++++++++||.+|+++++.+++.|+++||++
T Consensus       159 ~--~dg~~~~ts~~~~~l~~~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~~~l~~~gv~i  236 (467)
T PRK07845        159 E--PDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLEEVFARRGMTL  236 (467)
T ss_pred             C--CCCCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf             8--89851782055317100898699989879999999999973987999995574454318889999999999769099


Q ss_pred             CCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf             22002344201468721699972133211000002320453121036784000012676422333776333026848702
Q gi|254781053|r  233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG  312 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G  312 (466)
                      ++++++++++..+++..++.  .++  +++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|
T Consensus       237 ~~~~~~~~v~~~~~~~~v~~--~~g--~~i~~d~vl~a~Gr~Pn~~~lgL~~~gv~~~~~G~I~vd~~~rTs~~~IyA~G  312 (467)
T PRK07845        237 LKRSRAESVTRTGDGVLVTL--TDG--RTVEGSHALMAVGSVPNTAGLGLEEVGVELGPGGHITVDRVSRTSVPGIYAAG  312 (467)
T ss_pred             ECCCEEEEEEECCCEEEEEE--CCC--CEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             72887999998098269998--899--79987799995450255255570321875477885667987665877099970


Q ss_pred             CCCCCCCCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCC
Q ss_conf             433354344300012320120111222-2222333322100014455100147888623466589999604470344188
Q gi|254781053|r  313 DVVRGPMLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMN  391 (466)
Q Consensus       313 Dv~g~~~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~  391 (466)
                      ||++.++|+|+|.+||+++++|+++++ .+++|+.+|+++||+||+|+|||||+||+++++++++.+++|+.++|+++++
T Consensus       313 Dv~g~~~l~h~A~~qg~ia~~n~~g~~~~~~~~~~ip~~vft~PeiA~VGlte~ea~~~~~~~~~~~~~~~~~~ra~~~~  392 (467)
T PRK07845        313 DCTGVLPLASVAAMQGRIAMYHALGEGVSPIRLRTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSG  392 (467)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHCCC
T ss_conf             45788676558999999999997079975443455624896574334003889999877997699999777585764079


Q ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             983389999978998699999982998899999999998789878996378437788999999999860897
Q gi|254781053|r  392 SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP  463 (466)
Q Consensus       392 ~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~  463 (466)
                      .++||+|+++|+++++|||+|++|++|+|+||.+++||++++|++||.+++|+|||+||++++||+.++.++
T Consensus       393 ~~~G~~Kli~~~~~~~iLG~~ivG~~A~elI~~~a~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~l~~~~  464 (467)
T PRK07845        393 LRDGFVKIFCRPGTGVVIGGVVVAPRASELILPIAVAVQNRLTVDDLAQTFAVYPSLSGSITEAARRLMAHD  464 (467)
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             982699999999989699999989998999999999998839899993167779878999999999865787


No 15 
>PRK06370 mercuric reductase; Validated
Probab=100.00  E-value=0  Score=823.67  Aligned_cols=450  Identities=32%  Similarity=0.516  Sum_probs=415.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC-CCCCCH
Q ss_conf             3319999898668999999998799399993799715025136673709899999999999986675581647-753289
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA-SCHLDL   80 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~-~~~~d~   80 (466)
                      +||||||||||||++||.+|+++|++|+|||++ .+||+|+|+||||||+|+++++.+... +....+|+... .+.+||
T Consensus         4 ~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~-~~GG~Cln~GCiPsK~l~~~a~~~~~~-~~~~~~g~~~~~~~~~d~   81 (459)
T PRK06370          4 RYDAVVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLA-RRAAEYGVSIGGPVAVDF   81 (459)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEECCCHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCCCH
T ss_conf             175899998889999999999689919999689-977432146835289999999999999-776607922588677689


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             999999999999877777876400-4310110011100222102357521123221000046766524445766532100
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      ++++++++.++..+..++...+++ .+|+++.|.|+|.+++++.|.+    ++++++++||||||+|+.+|..  ..+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~~~tv~v~~----~~~~a~~iiIATGs~p~~p~ip--G~~~~  155 (459)
T PRK06370         82 KAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEGPNTVRVGG----ELLRAKRIFINTGARAAVPPIP--GLDEV  155 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCC----EEEEEEEEEECCCCCCCCCCCC--CCCCC
T ss_conf             99999999999875233898852258729999689971567535698----5997628998889865457778--87878


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             24530574111111333210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      .++|++++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|++.||+++++++++
T Consensus       156 ~~~ts~~~~~l~~~P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gi~i~~~~~v~  235 (459)
T PRK06370        156 GYLTNETVFSLDELPEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILEREGIDVRLDAKCL  235 (459)
T ss_pred             CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             78744687371548954999898477999999999639889999965734555475678999999985298620275789


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      +++..+++..+.+.. +++..++++|.||+++||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|.++
T Consensus       236 ~i~~~~~~~~v~~~~-~~~~~~i~~d~vl~a~Gr~Pnt~~L~Le~~gv~~d~~G~I~Vd~~~~Ts~p~IyA~GDv~g~~~  314 (459)
T PRK06370        236 RVARDGDGIAVGLDC-AGGAPEIAGSHILVAVGRVPNTDDLGLEAAGVATDARGYIKVDDQLRTTNPGIYAAGDCNGRGA  314 (459)
T ss_pred             EEEEECCEEEEEEEE-CCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEEEECCCCCCC
T ss_conf             999829989999997-9973899975899961431465554710038632899858879975637874498311468867


Q ss_pred             CCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE
Q ss_conf             443000123201201112-2222223333221000144551001478886234665899996044703441889833899
Q gi|254781053|r  320 LAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK  398 (466)
Q Consensus       320 l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k  398 (466)
                      |+|+|.+||+++++|+++ .+.+++|..+|+++||+||+|+||+||+||+++|+++++++++|+.++|++..++++||+|
T Consensus       315 lah~A~~eg~~a~~n~~~~~~~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vK  394 (459)
T PRK06370        315 FTHTAYNDAEIVAANLLDGGPRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMK  394 (459)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEE
T ss_conf             74589999999999983699743202443046622754688538999998769987999998885755654589847999


Q ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             99978998699999982998899999999998789878996378437788999999999860
Q gi|254781053|r  399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCF  460 (466)
Q Consensus       399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~  460 (466)
                      |++|++|++|||+|++|++|+||||.+++||++++|++||.+++|+|||+||+|++||+.+-
T Consensus       395 lv~~~~t~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~dl~~~i~~hPT~sE~l~~aa~~~~  456 (459)
T PRK06370        395 VHVDADTDRILGATILGVHGDEMIHEILDAMTAGAPYTTLSRAMHIHPTVSELIPTLAQALR  456 (459)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999989799999988999999999999998889899994077779886999999999744


No 16 
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=823.68  Aligned_cols=456  Identities=32%  Similarity=0.538  Sum_probs=403.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHH--HHHHCCEEC------
Q ss_conf             319999898668999999998799399993799-71502513667370989999999999998--667558164------
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPSKALLHASEMYSHIAK--EAGDLGINI------   73 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~~g~~~------   73 (466)
                      |||+|||+||+|+.||++|+++|+||+|||.++ .+||||+||||||||+|+++++.++.+.+  +...||+..      
T Consensus       124 YDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~g~~  203 (673)
T PTZ00153        124 YDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAFGKN  203 (673)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             79899998762899999999849869999368787477242777321199998735799886145565337511323433


Q ss_pred             -------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-------EEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             -------------775328999999999999987777787640043-------101100111002221023575211232
Q gi|254781053|r   74 -------------ASCHLDLKKMMSYKKSIVESNTQGINFLLKKNK-------IITYHGSARIVSNNKILVKGSSSEETI  133 (466)
Q Consensus        74 -------------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~-------V~~~~g~a~~~~~~~v~V~~~~~~~~i  133 (466)
                                   ...++|+.+++++++.++++++.++...+++.+       |+++.|++++.+++++.++..  .+++
T Consensus       204 ~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~~~~~v~~~~~--~~~~  281 (673)
T PTZ00153        204 GKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHIIDKNIIKGEKS--GKEF  281 (673)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEECCCCEEEECCC--CCEE
T ss_conf             32221111222354211569999999999999875017767540676666663599933037714634774378--8555


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC
Q ss_conf             21000046766524445766532100245305741111113332101234454332013220122011100001112212
Q gi|254781053|r  134 EAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM  213 (466)
Q Consensus       134 ~ad~iviATGs~p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~  213 (466)
                      +++++||||||+|+.+|+++  .+++.++|||++++|+.+|++++|||||+||+|||++|++||++||++|..|++||.+
T Consensus       282 ~aKnIIIATGS~P~~ppgi~--iD~k~V~TSd~AL~Le~lPk~m~IIGgGvIGlEFAsvy~aLGseVTvIE~~~~ILP~~  359 (673)
T PTZ00153        282 KVKNIIIATGSTPNIPDNIE--IDDKSVFTSDEAVKLEGLKNYMGIIGMGIIGIEFADIYTALGSEIIFFDYSPELLPII  359 (673)
T ss_pred             ECCEEEECCCCCCCCCCCCC--CCCCEEECHHHHCCHHHCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             02307990188778899878--6876686303312700078658998776401319999997698699995366568988


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEEEEC-------------CCCCCCEEEEEEECCCCEEEECC
Q ss_conf             222112222222-2222223220023442014687216999721-------------33211000002320453121036
Q gi|254781053|r  214 DKEIAAHCLKIM-SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTD-------------DEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       214 d~~~~~~~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~-------------g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      |+|+++.+++.| +++||++++++.++.++...++..|++...+             ++..++++|.+|+|+||+|||++
T Consensus       360 D~DIsk~ler~flK~rGI~i~~gt~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~leaD~vLVAvGR~PnT~~  439 (673)
T PTZ00153        360 DADVAKYFERVFIKNKPMNVHLNTEIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELHVDSCLVATGRKPNTNN  439 (673)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCC
T ss_conf             99999999999864049489962179999863898579996223344444332223566516871899985265027788


Q ss_pred             CCCEEEECCCCCCCCCCCCCCCEEECCC------CEEECCCCCCCCCCCEECCCCCCEEECCCCCC--------------
Q ss_conf             7840000126764223337763330268------48702433354344300012320120111222--------------
Q gi|254781053|r  280 LGLEEIGINIDHRGCIEIGGQFQTSIST------IYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK--------------  339 (466)
Q Consensus       280 l~Le~~gi~~~~~G~I~vd~~~~Ts~p~------IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~--------------  339 (466)
                      |+||++||+++ +|+|.||++||||+|+      |||+|||+++|+|||+|.+||++++++|.|+.              
T Consensus       440 LGLE~~GI~~~-rG~I~VDe~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~Gk~g~~~~~d~~~~~~~  518 (673)
T PTZ00153        440 LGLEKLKIQMK-RGYVQVDDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIEAKEGEALKIDPENGSHS  518 (673)
T ss_pred             CCCHHHCEEEC-CCEEEECCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             88364182533-79799799637568888667787999856885256879998679999987254554333453334433


Q ss_pred             ----CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEE-----------------EEEECCC--------CHHHHC
Q ss_conf             ----22223333221000144551001478886234665899-----------------9960447--------034418
Q gi|254781053|r  340 ----GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVG-----------------KFPFSAN--------GRARSM  390 (466)
Q Consensus       340 ----~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~-----------------~~~~~~~--------~ra~~~  390 (466)
                          .++||+.||+++||+||+|+|||||+|||+.+.++.++                 .++|..+        ++|.++
T Consensus       519 ~~~~~Pi~Y~~IPs~iYT~PEIAsVGlTE~eAKe~g~~~~vGv~~~~fKan~kalae~~~f~F~~~~~~~a~~~GkA~~~  598 (673)
T PTZ00153        519 DWASKPIIYKNIPSVCYTNPELAFIGLTEKEAKQLHPPDNVGVEISFYKANSKILCEHNDISFNNLKKNNSYNKGKYNIN  598 (673)
T ss_pred             CCCCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             33456655687770775787404610089999850666553501210134301110023345553222211234300025


Q ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             8983389999978998699999982998899999999998789878996378437788999999999860897
Q gi|254781053|r  391 NSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP  463 (466)
Q Consensus       391 ~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~~~  463 (466)
                      ++++||+|+|+|+++++|||+|++|++|+|||+.+++||.+++|++||++++|+|||+||+|.+|-.++.+-.
T Consensus       599 get~GfvKiI~dk~T~eILGahIiG~~AtELI~E~~lA~~~~~t~edla~tIHaHPTLSEvl~~afk~~~~~~  671 (673)
T PTZ00153        599 DHTNGMVKIIFKEDSKEILGMFIVGNYASILIHEAVLAINLKLSAFDLAHMVHSHPTISEVLDAAFKAIAKIR  671 (673)
T ss_pred             CCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             7888649999978999599999988989999999999998599999996123789988998999999864132


No 17 
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=100.00  E-value=0  Score=810.04  Aligned_cols=447  Identities=27%  Similarity=0.452  Sum_probs=407.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             33199998986689999999987993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      +|||+|||+||||+.+|.++  .|+||+|||++. +||||+|+||||||+|+++++.+..+ +....+|++.....+||+
T Consensus         1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~-~GGtCln~GCiPsK~ll~~a~~~~~~-~~~~~~gi~~~~~~~~~~   76 (453)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVAQTI-REASRLGVDAHIDRVRWP   76 (453)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCHH
T ss_conf             97789989888999999998--299299997899-77817161668899999999999999-765626820677841999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             999999999998777-7787640043101100111002221023575211232210000467665244457665321002
Q gi|254781053|r   82 KMMSYKKSIVESNTQ-GINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV  160 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~-~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~  160 (466)
                      +++++++..++.+.. +.+.+++..+|++++|+|+|++++++.|..+++.++|+++++||||||+|+.+|..  ..++..
T Consensus        77 ~~~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~~~~~v~v~~~~~~~~i~a~~iiIATGS~P~~p~~~--g~~~~~  154 (453)
T PRK07846         77 DIVSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFVDADGLYTLRTGDGEEITADQIVIAAGSRPVIPPAI--ADSGVR  154 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCEEEEECEEEEECCCCCCCCCCC--CCCCCE
T ss_conf             999999999999987569997158991899848999159867861379846998164999028877789986--657877


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             45305741111113332101234454332013220122011100001112212222112222222222222322002344
Q gi|254781053|r  161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      ++||+++++++++|+|++|||||+||+|||++|++||++||++++++++|+.+|+++++.+.+.++ .++++++++.+++
T Consensus       155 ~~ts~~~l~l~~lP~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~~-~~i~i~~~~~v~~  233 (453)
T PRK07846        155 YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIAG-KKWDLRLGRNVVG  233 (453)
T ss_pred             EEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-CCEEEEECCEEEE
T ss_conf             986643001543886499989975799999999952992689974653244347899999999986-4859995768999


Q ss_pred             HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCC
Q ss_conf             20146872169997213321100000232045312103678400001267642233377633302684870243335434
Q gi|254781053|r  241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPML  320 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l  320 (466)
                      ++..++++.++..  ++  .++++|.||+|+||+||++.|+|+++|++++++|+|.||++||||+|||||+|||+++++|
T Consensus       234 ~~~~~~~~~v~~~--~g--~~i~~d~vl~a~GR~Pn~~~l~l~~~gi~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~l  309 (453)
T PRK07846        234 VSQDGSGVTLRLD--DG--STVDADVLLVATGRVSNGDLLDAEAAGVDVHEDGRVKVDEYQRTSARGVFALGDVSSPYQL  309 (453)
T ss_pred             EEEECCEEEEEEC--CC--CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCC
T ss_conf             9970983599947--99--6998549999777566635558331477445468543267446478729998746887676


Q ss_pred             CCEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE
Q ss_conf             4300012320120111222--22223333221000144551001478886234665899996044703441889833899
Q gi|254781053|r  321 AHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK  398 (466)
Q Consensus       321 ~~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k  398 (466)
                      +|+|.+||+++++|+++..  ..+||..+|+++||+||+|+||+||+||+++|++|.+..++|+.+++++.+++++||+|
T Consensus       310 ah~A~~qg~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~vK  389 (453)
T PRK07846        310 KHVANHEARVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVK  389 (453)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEE
T ss_conf             22899999999999725899732246764159981786799869999998769977999997787611000279858999


Q ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH
Q ss_conf             999789986999999829988999999999987898789963784-3778899999999986
Q gi|254781053|r  399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAVREAALSC  459 (466)
Q Consensus       399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l~~aa~~~  459 (466)
                      +++|+++++|||+|++|++|+||||.+++||++++|++||++++| +|||++|++++|++.+
T Consensus       390 li~d~~~~~IlG~~ivg~~A~ElI~~~alai~~~~t~~dla~~~~~~HPT~sE~i~~A~~~l  451 (453)
T PRK07846        390 LIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLTAREMARGQYWIHPALPEVVENALLGL  451 (453)
T ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf             99999989899999988999999999999998779599994188667996289999999636


No 18 
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00  E-value=0  Score=810.83  Aligned_cols=433  Identities=30%  Similarity=0.505  Sum_probs=396.2

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             93-3199998986689999999987993999937997-150251366737098999999999999866755816477532
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |+ |||+||||||||++||.+|+++|++|+|||+++. +||||+|+||||||+|++.++.                  ..
T Consensus         1 M~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPsK~Li~~a~~------------------~~   62 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------------------HT   62 (441)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH------------------CC
T ss_conf             997898999978899999999997899299997589987732456685888999999987------------------25


Q ss_pred             CHHHHHHHHHHHHHHHHH-HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCC
Q ss_conf             899999999999998777-778764004310110011100222102357521123221000046766524--44576653
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQ-GINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSID  155 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~-~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~--~iP~~~~~  155 (466)
                      ||.+.+++++..++.+++ .++.+.+..+|++++|+|+|+++++++|...+++++++++++||||||+|.  ++|+..  
T Consensus        63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~l~a~~ivIATGs~p~~p~ipg~~--  140 (441)
T PRK08010         63 DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPDGNLEIHGEKIFINTGAQSVVPPIPGIT--  140 (441)
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCC--
T ss_conf             799999879999999875539888542695899989998579823776489989998258999337765455568757--


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21002453057411111133321012344543320132201220111000011122122221122222222222223220
Q gi|254781053|r  156 FDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLN  235 (466)
Q Consensus       156 ~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~  235 (466)
                       +...++||+++++++++|+|++|||||+||+|+|++|++||++||++++.+++|+.+|+++++.+++.|+++||+++++
T Consensus       141 -~~~~v~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il~~~D~~~~~~l~~~l~~~Gi~i~~~  219 (441)
T PRK08010        141 -TTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILN  219 (441)
T ss_pred             -CCCEEECHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEECC
T ss_conf             -8753985078525211696799989858999999999975987889704673266311468999999998788599738


Q ss_pred             HHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCC
Q ss_conf             02344201468721699972133211000002320453121036784000012676422333776333026848702433
Q gi|254781053|r  236 SKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV  315 (466)
Q Consensus       236 ~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~  315 (466)
                      +.+++++..+++..+.  ..+   .++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||+
T Consensus       220 ~~v~~i~~~~~~~~v~--~~~---~~~~~d~vlva~Gr~Pn~~~L~le~~gv~~~~~G~I~Vd~~~~Ts~~~IyA~GDv~  294 (441)
T PRK08010        220 AHVERISHHENQVQVH--SEH---AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVT  294 (441)
T ss_pred             CEEEEEEECCCEEEEE--ECC---CEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCEEEEECCC
T ss_conf             6799999539989999--768---67866489994476655444560322853578898866898873887689970268


Q ss_pred             CCCCCCCEECCCCCCEEECCCCC--CCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCC
Q ss_conf             35434430001232012011122--2222233332210001445510014788862346658999960447034418898
Q gi|254781053|r  316 RGPMLAHKAEDEGIAVAEIISGQ--KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSI  393 (466)
Q Consensus       316 g~~~l~~~A~~~g~~aa~~i~~~--~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~  393 (466)
                      |.++|+|+|.+||+++++++++.  ....||..+|+++||+||+|+||+||+||+++|++|.+.+++|+.++|++.++++
T Consensus       295 g~~~lah~A~~e~~~~~~~i~~~~~~~~~~~~~vP~~vft~PeiA~VGlte~~a~~~G~~~~~~~~~~~~~~ra~~~~~~  374 (441)
T PRK08010        295 GGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT  374 (441)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCC
T ss_conf             98676368999999999998367997545445662476137632788689999986599889999987767242341898


Q ss_pred             CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             338999997899869999998299889999999999878987899637843778899999999986
Q gi|254781053|r  394 DGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSC  459 (466)
Q Consensus       394 ~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~  459 (466)
                      +||+|+++|+++++|||+|++|++|+|+||.+++||++++|++||++++|+|||+||+|+++.+.+
T Consensus       375 ~G~~Klv~d~~t~~ILGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~HPTlsE~l~e~~~~~  440 (441)
T PRK08010        375 RGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV  440 (441)
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             389999999996989999998999899999999999878989999317777987489999999842


No 19 
>PRK06116 glutathione reductase; Validated
Probab=100.00  E-value=0  Score=803.17  Aligned_cols=439  Identities=30%  Similarity=0.489  Sum_probs=404.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      |||+||||||||++||.+|+++|++|+|||++ .+||||+|+||||||+|++++++...+.+.+..+|++.....+||++
T Consensus         5 YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d~~~   83 (450)
T PRK06116          5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-ELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFDWKK   83 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             88899998889999999999687969999379-97852541571646999999999999997787558136877528999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             99999999998777778764004310110011100222102357521123221000046766524445766532100245
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIV  162 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~~~  162 (466)
                      ++++++..++++.+.+...++..+|++++|.|+|+++++++|.+    ++++++++||||||+|+. |.++  . .+..+
T Consensus        84 ~~~~~~~~i~~l~~~~~~~~~~~~V~~~~g~a~f~~~~tv~v~~----~~i~a~~ivIATGs~p~~-p~ip--G-~e~~~  155 (450)
T PRK06116         84 LIANRDAYIDRLHGSYRRGLENNGVDLIEGFARFVDAHTVEVNG----ETYTADHILIATGGRPSI-PDIP--G-AEYGI  155 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC----EEEEEEEEEECCCCCCCC-CCCC--C-CCEEE
T ss_conf             99999999999999999998768968997068872687403598----298541799987897758-9998--8-11266


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             30574111111333210123445433201322012201110000111221222211222222222222232200234420
Q gi|254781053|r  163 SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVK  242 (466)
Q Consensus       163 t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~  242 (466)
                      ||+++|+++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++.+++++
T Consensus       156 tsd~~~~l~~lP~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l~~~gi~i~~~~~v~~v~  235 (450)
T PRK06116        156 TSDGFFALEELPKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIQLHTNAVPKAVE  235 (450)
T ss_pred             ECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEE
T ss_conf             14452254547977999999666999999999609848999944840120487777999999986497896398899999


Q ss_pred             CCCCC-CEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCC
Q ss_conf             14687-21699972133211000002320453121036784000012676422333776333026848702433354344
Q gi|254781053|r  243 KVKGK-AQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLA  321 (466)
Q Consensus       243 ~~~~~-~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~  321 (466)
                      ..+++ ..+.+  .++  +++++|.||+|+||+||++.|+|+++||++|++|+|.||+++|||+|||||+|||++.++|+
T Consensus       236 ~~~~g~~~v~~--~~g--~~~~~d~vl~a~Gr~Pnt~~l~L~~~gv~l~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~la  311 (450)
T PRK06116        236 KNADGSLTLTL--EDG--ETLTVDCLIWAIGREPNTDNLGLENTGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELT  311 (450)
T ss_pred             ECCCCCEEEEE--CCC--CEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf             85996289998--799--79997089991784205565675014767757887657877777886337500146876766


Q ss_pred             CEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCHHHHCCCCCEEE
Q ss_conf             300012320120111222--22223333221000144551001478886234--66589999604470344188983389
Q gi|254781053|r  322 HKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGRARSMNSIDGFV  397 (466)
Q Consensus       322 ~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~ra~~~~~~~g~~  397 (466)
                      |+|.+||+++++|+++.+  .+++|+.+|+++||+||+|+||+||+||++++  .++.+++.+|.+++++...+.++||+
T Consensus       312 h~A~~~g~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~~~v~v~~~~~~~~~~a~~~~~~~g~~  391 (450)
T PRK06116        312 PVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGDDNVKVYRSSFTPMYTALTGHRQPCLM  391 (450)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCEEE
T ss_conf             89999999999998189997652568633688526401888789999997379975899992257515563189886799


Q ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
Q ss_conf             999978998699999982998899999999998789878996378437788999999
Q gi|254781053|r  398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVRE  454 (466)
Q Consensus       398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~  454 (466)
                      ||++|++|++|||+|++|++|+|+||.+++||++++|++||.+++|+|||++|.|..
T Consensus       392 Klv~d~~t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i~~hPT~sE~f~~  448 (450)
T PRK06116        392 KLVVDGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVT  448 (450)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf             999999979799999989999999999999998789899992367669862334642


No 20 
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00  E-value=0  Score=805.77  Aligned_cols=444  Identities=27%  Similarity=0.451  Sum_probs=399.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             33199998986689999999987993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      +|||+|||+||||+.+|.++  .|++|+|||++. +||||+|+||||||+|+++++.+..+ ++...+|++.....+||+
T Consensus         2 ~YDviVIGaGpgG~~~a~~~--ag~kValvEk~~-~GGtCln~GCIPsK~ll~~a~~~~~~-~~~~~~Gi~~~~~~~~~~   77 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSI-GESARLGIDAEIDSVRWP   77 (452)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHCCEECCCCCCCHH
T ss_conf             47689999868999999998--299099997899-27858023588899999999999999-777735832566730799


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999999----9999987777787640043101100111002221023575211232210000467665244457665321
Q gi|254781053|r   82 KMMSYK----KSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        82 ~~~~~~----~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      ++++++    .+.+....+.+...++..+|++++|+|+|++++++.+..   .++++++++||||||+|+.+|..  ..+
T Consensus        78 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~~~tv~v~~---g~~~~a~~iiIATGs~P~~p~~~--~~~  152 (452)
T TIGR03452        78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGD---GEEITGDQIVIAAGSRPYIPPAI--ADS  152 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEECCC---CCEEEECEEEECCCCCCCCCCCC--CCC
T ss_conf             9999998767899975599998536778869999899993785798189---87898466999379988788876--778


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             00245305741111113332101234454332013220122011100001112212222112222222222222322002
Q gi|254781053|r  158 EQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSK  237 (466)
Q Consensus       158 ~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~  237 (466)
                      +..++||+++|+++++|++++|||||+||+|||++|++||++||++++++++|+.+|+++++.+.+. .++++++++++.
T Consensus       153 ~~~~~ts~~~l~l~~lP~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~~-~~~~~~i~~~~~  231 (452)
T TIGR03452       153 GVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEI-AKKKWDIRLGRN  231 (452)
T ss_pred             CCEEECCHHHHCCHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH-HHCCEEEEECCE
T ss_conf             9868655655433005866999888689999999999619949999967622333488999999999-756829993238


Q ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC
Q ss_conf             34420146872169997213321100000232045312103678400001267642233377633302684870243335
Q gi|254781053|r  238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG  317 (466)
Q Consensus       238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~  317 (466)
                      +.+++..+++..+++.+  +  .++++|.||+|+||+||++.|+|+++||+++++|+|.||++||||+|||||+|||++.
T Consensus       232 v~~~~~~~~~~~v~~~~--g--~~~~~d~vl~a~GR~Pn~~~L~l~~~gv~~~~~g~I~vd~~~~Ts~~~IyA~GDv~g~  307 (452)
T TIGR03452       232 VTAVEQDGDGVTLTLDD--G--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP  307 (452)
T ss_pred             EEEEEECCCEEEEEECC--C--CEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             99999739803999469--9--7998228999248766636668012296435798730287678689739997406887


Q ss_pred             CCCCCEECCCCCCEEECCCCCC--CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCE
Q ss_conf             4344300012320120111222--22223333221000144551001478886234665899996044703441889833
Q gi|254781053|r  318 PMLAHKAEDEGIAVAEIISGQK--GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDG  395 (466)
Q Consensus       318 ~~l~~~A~~~g~~aa~~i~~~~--~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g  395 (466)
                      ++|+|+|.+||+++++|+++.+  .+++|..+|+++||+||+|+||+||+||+++|+++++.+++|+.+++++.+++++|
T Consensus       308 ~~Lah~A~~eg~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G  387 (452)
T TIGR03452       308 YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTG  387 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCE
T ss_conf             57700899999999999707899741257765149982576799858999999759977999997787611111379838


Q ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHHHHH
Q ss_conf             899999789986999999829988999999999987898789963784-3778899999999986
Q gi|254781053|r  396 FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAVREAALSC  459 (466)
Q Consensus       396 ~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l~~aa~~~  459 (466)
                      |+|+++|+++++|||+|++|++|+|+||.+++||++++|++||++++| +|||+||++++|++++
T Consensus       388 ~vKlv~d~~~~~ILG~~ivG~~A~ElI~~~a~ai~~~~t~~dl~~~~~~~HPTlsE~i~eA~lal  452 (452)
T TIGR03452       388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL  452 (452)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf             99999999989799999989999999999999998869799994187557996289999998459


No 21 
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00  E-value=0  Score=805.00  Aligned_cols=445  Identities=27%  Similarity=0.392  Sum_probs=394.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf             319999898668999999998799399993799--------715025136673709899999999999986675581647
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA   74 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~   74 (466)
                      ||||||||||||+.||++|+++|+||+|||+.+        .+||||+|+||||||+|+++++.++.+.+....+|+...
T Consensus        42 YDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~~~~~Gi~~~  121 (541)
T PTZ00052         42 YDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLDSQMYGWKTS  121 (541)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99899997889999999999889909999424556668717795011783628999999999999999756886583278


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC---CCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             7532899999999999998777778764004310110011100222102357---5211232210000467665244457
Q gi|254781053|r   75 SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG---SSSEETIEAKNIVIATGSEASGLPG  151 (466)
Q Consensus        75 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~---~~~~~~i~ad~iviATGs~p~~iP~  151 (466)
                      ...+||+++++++++.++.+...+...++..+|++++|+|+|++++++.|..   .+..++++++++||||||+|..+|+
T Consensus       122 ~~~~d~~~l~~~~~~~i~~l~~~~~~~l~~~~V~~i~G~a~f~~~~tV~v~~~~~~g~~~~i~a~~iIIATGS~P~iP~~  201 (541)
T PTZ00052        122 SLSHEWGKLVETVQSHIRSLNFSYRTGLRSSNVKYINGLAKLKDPHTVEYYLKGDNSQEETITSKYILIATGCRPHIPED  201 (541)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCC
T ss_conf             76316999999999999998888998887689689985899836987899842588852799952799857888767888


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66532100245305741111113332101234454332013220122011100001112212222112222222222222
Q gi|254781053|r  152 MSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMN  231 (466)
Q Consensus       152 ~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~  231 (466)
                      +  +...+..+||+++|+++++|+|++|||||+||+|||++|++||++||++.| +++|+.+|+++++.+.+.|+++||+
T Consensus       202 i--pg~~~~~ltS~~~l~l~~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r-~~~L~~~D~di~~~l~~~l~~~GV~  278 (541)
T PTZ00052        202 V--EGAIELSITSDDIFSLKKSPGKTLVVGASYVALECAGFLNSLGFDVTVAVR-SIVLRGFDRQCAEKVKEYMEEQGVK  278 (541)
T ss_pred             C--CCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             7--767630206532206534896289989869999999999975985899953-7767565777999999999850749


Q ss_pred             CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCC-CCCCCCCEEECCCCEE
Q ss_conf             322002344201468721699972133211000002320453121036784000012676422-3337763330268487
Q gi|254781053|r  232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGC-IEIGGQFQTSISTIYA  310 (466)
Q Consensus       232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~-I~vd~~~~Ts~p~IyA  310 (466)
                      +++++.+.+++..+++..+++.+  ++  ...+|.||+|+||+||+++|+||++||+++++|+ |.+|+++|||+|||||
T Consensus       279 i~~~~~v~~v~~~~~~~~v~~~d--g~--~~~~d~vLvA~GR~Pnt~~LgLe~~Gv~~~~~G~~i~~d~~~~Ts~p~IyA  354 (541)
T PTZ00052        279 FKVGVLPKKLEKVNDKIKVSFSD--GT--VELYDTVLYATGRKGDIKGLNLEALNVEVSKSGNKIIPKDLSCTNVPSIFA  354 (541)
T ss_pred             EECCEEEEEEEECCCEEEEEECC--CC--EEEEEEEEEECCCCCCCCCCCCHHCCEEECCCCCEEEEECCCCCCCCEEEE
T ss_conf             97454899999739826999768--94--788128999226556457778422065887899889513366677773999


Q ss_pred             ECCCC-CCCCCCCEECCCCCCEEECCCC-CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCH
Q ss_conf             02433-3543443000123201201112-2222223333221000144551001478886234--665899996044703
Q gi|254781053|r  311 IGDVV-RGPMLAHKAEDEGIAVAEIISG-QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGR  386 (466)
Q Consensus       311 ~GDv~-g~~~l~~~A~~~g~~aa~~i~~-~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~r  386 (466)
                      +|||+ |.|+|+|+|.+||+++++|+++ .+..+||+.+|+++||+||+|+|||||+||++++  .++.+...+|...+.
T Consensus       355 iGDV~~G~p~Lah~A~~eg~vaa~~i~~g~~~~~d~~~IP~vvfT~PEiA~VGlTEeeA~~~~~~~~v~v~~~~f~~~~~  434 (541)
T PTZ00052        355 VGDVAEGVPELAPVAIKAGEILARRLFKGSNEIMDYDFIPTTIYTPIEYGACGYSEEKAYEKYGESNVEVFLQEFNNLEI  434 (541)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCHHH
T ss_conf             50546896424899999999999998469996556589985997589626688999999973688876898762255013


Q ss_pred             HHHCC---------------CCCEEEEEEE-ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH
Q ss_conf             44188---------------9833899999-7899869999998299889999999999878987899637843778899
Q gi|254781053|r  387 ARSMN---------------SIDGFVKILA-NEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSE  450 (466)
Q Consensus       387 a~~~~---------------~~~g~~kli~-~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E  450 (466)
                      +....               ...||+|+++ +++++||||+|++||+|+||||.+++||++++|++||++++|+|||+||
T Consensus       435 a~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~rILG~hivGp~AsELI~e~alAm~~g~t~~dla~tih~HPTlSE  514 (541)
T PTZ00052        435 SAVHREKHERAQKDEYDFDVSSTCLAKLVCLKSEDNRVVGFHYVGPNAGEVTQGMALALRLKATKKDFDDCIGIHPTDAE  514 (541)
T ss_pred             HHCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHH
T ss_conf             21001110110134323344567249999992898989999998699899999999999879999999318677998799


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254781053|r  451 AVRE  454 (466)
Q Consensus       451 ~l~~  454 (466)
                      +|.+
T Consensus       515 a~~~  518 (541)
T PTZ00052        515 SFMN  518 (541)
T ss_pred             HHHH
T ss_conf             9986


No 22 
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00  E-value=0  Score=787.99  Aligned_cols=431  Identities=31%  Similarity=0.495  Sum_probs=395.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             933199998986689999999987993999937997-1502513667370989999999999998667558164775328
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      |+|||+||||||||++||.+|+++|++|+|||+++. +||||+|+||||||+|+++++                  ..++
T Consensus         2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPsk~ll~~a~------------------~~~~   63 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPTKTLLVAAE------------------KNLS   63 (438)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH------------------CCCC
T ss_conf             9558799997889999999999788949999469987685547787040157898766------------------2799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999998777778764004310110011100222102357521123221000046766524445766532100
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      |++++++++.++++++......++..+|++++|.++|+++++++|...+..++++++++||||||+|+.+|. +...+.+
T Consensus        64 ~~~~~~~k~~~~~~l~~~~~~~~~~~gv~~~~g~a~~~~~~~v~V~~~~~~~~~~a~~iIIATGs~p~~l~i-pG~~d~~  142 (438)
T PRK07251         64 FEEVMATKNTVTSRLNAKNYAMLAGTGVDIYDAEAHFVSNKVIEVTAGDEKQELTAETIVINTGAVSNVLPI-PGLADSK  142 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCC-CCCCCCC
T ss_conf             999999999999999889999997489489997999816848999559972999976898726787866998-8656875


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             24530574111111333210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      .+++++++++++++|++++|||||+||+|+|++|+++|++|||+++++++|+.+|+++++.+++.|++.||++++++++.
T Consensus       143 ~v~~s~~~~~l~~~p~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gv~i~~~~~v~  222 (438)
T PRK07251        143 HVYDSTGIQNLEKLPKRLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFLPREEPSIAALAKQYMEEDGIEFLQNAHTT  222 (438)
T ss_pred             EEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf             69801787646537976999888645889999998348768999846100244463668999999986695999688799


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      +++.+++...+..   ++  .++++|.||+|+||+||++.|+|+++||+++++|+|+||++||||+|||||+|||++.++
T Consensus       223 ~v~~~~~~~~v~~---~~--~~~~~d~vl~a~Gr~Pnt~~l~le~~gi~~~~~G~I~vd~~~rTs~~~IyA~GDv~g~~~  297 (438)
T PRK07251        223 EVKNDGDQVVVVT---ED--ETYRFDALLYATGRKPNTEPLQLENTDIELTERGAIKVDKHCQTSVPGVFAVGDVNGGLQ  297 (438)
T ss_pred             EEEECCCEEEEEE---EC--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf             9995699799998---27--789861899925876666656741147442789978018977667862999225578867


Q ss_pred             CCCEECCCCCCEEECCCCCCC--CCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEE
Q ss_conf             443000123201201112222--222333322100014455100147888623466589999604470344188983389
Q gi|254781053|r  320 LAHKAEDEGIAVAEIISGQKG--HVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFV  397 (466)
Q Consensus       320 l~~~A~~~g~~aa~~i~~~~~--~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~  397 (466)
                      |+|+|.+||+++++++++...  ..+|..+|+++||+||+|+||+||+||++++++|++.+++|+.++|++..++++||+
T Consensus       298 l~~~A~~~~~~~~~~~~g~~~~~~~~~~~vP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~  377 (438)
T PRK07251        298 FTYISLDDFRIVFSYLTGDGSYTLEDRGNVPTSMFITPPLSQVGLTEKQAKEAGLPYAVKELPVAAMPRGHVNNDLRGAF  377 (438)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEE
T ss_conf             73688999999999970899875455556655897277669997889999866997799999877584664479870899


Q ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             9999789986999999829988999999999987898789963784377889999999
Q gi|254781053|r  398 KILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREA  455 (466)
Q Consensus       398 kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~a  455 (466)
                      |+++|+++++|||+|++|++|+||||.+++||++++|++||++++|+|||++|+|+++
T Consensus       378 Kli~d~~~~~IlGa~ivg~~A~elI~~~~lai~~~~t~~dl~~~i~~hPT~sE~l~e~  435 (438)
T PRK07251        378 KAVVNTETKEILGATLFGAGSHEIINIITMAMDNKIPYTYFTKQIFTHPTMAENLNDL  435 (438)
T ss_pred             EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             9999999698999999899989999999999988398999940577798647587687


No 23 
>KOG1335 consensus
Probab=100.00  E-value=0  Score=769.93  Aligned_cols=462  Identities=54%  Similarity=0.880  Sum_probs=441.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEECCCCCCCHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998-66755816477532899
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGINIASCHLDLK   81 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~~~~~~~d~~   81 (466)
                      |||+|||+||+|+.||++++++|++++.||+...+||||+|+||||||+|++.+++++...+ ++..+|++....++|++
T Consensus        40 ~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~  119 (506)
T KOG1335          40 YDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQ  119 (506)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHH
T ss_conf             78899877872589999998715416887315753654564363353887633378998876689860931132004789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             9999999999987777787640043101100111002221023575211-232210000467665244457665321002
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQV  160 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~~~~  160 (466)
                      ++++.+++.++.+..+++.++++++|+++.|++.|++|++|.+...++. ..++++++||||||...++||+.  .+++.
T Consensus       120 ~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~--IDekk  197 (506)
T KOG1335         120 AMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGIT--IDEKK  197 (506)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCEE--ECCCE
T ss_conf             9998777789997668998876348389951376538746888535897337863169996177567789757--63766


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             45305741111113332101234454332013220122011100001112212222112222222222222322002344
Q gi|254781053|r  161 IVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       161 ~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      +++|+.++.|++.|++++|||+|+||+||++.|++||++||++|..+++.+.+|.|+++.+++.|.+.|+++++++.+.+
T Consensus       198 IVSStgALsL~~VPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgi~F~l~tkv~~  277 (506)
T KOG1335         198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTS  277 (506)
T ss_pred             EEECCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf             87147734331175157997474566554668876377179998443444655889999999999863823672327887


Q ss_pred             HHCCCC-CCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC
Q ss_conf             201468-721699972-133211000002320453121036784000012676422333776333026848702433354
Q gi|254781053|r  241 VKKVKG-KAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP  318 (466)
Q Consensus       241 i~~~~~-~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~  318 (466)
                      ++...+ .+.+++.+. +++..+++||.+|+++||+|.|++|+||+.|++.|++|++.||..++|.+||||++|||+.+|
T Consensus       278 a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gp  357 (506)
T KOG1335         278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGP  357 (506)
T ss_pred             EEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCCCC
T ss_conf             51068885799997557785068884289998066445466880430655365664002650134588458832567741


Q ss_pred             CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEE
Q ss_conf             34430001232012011122222223333221000144551001478886234665899996044703441889833899
Q gi|254781053|r  319 MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVK  398 (466)
Q Consensus       319 ~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~k  398 (466)
                      ||+|.|..||+++.+-|.+...+++|..+|+++||+||+|+||+||+|+++.|++|+++++||+.+.|+++..+++||+|
T Consensus       358 MLAhkAe~egI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~ykvgkfpF~aNsRaktn~d~eg~vK  437 (506)
T KOG1335         358 MLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVK  437 (506)
T ss_pred             HHHHHHHHHCHHHEEEECCCCCCCCCCCCCCEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCCEEE
T ss_conf             43101024142230000466755656788723531673135225556687658534763100003421102577663058


Q ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCC
Q ss_conf             999789986999999829988999999999987898789963784377889999999998608-97749
Q gi|254781053|r  399 ILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFD-QPIHM  466 (466)
Q Consensus       399 li~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~~~-~~~~~  466 (466)
                      +++|++|+||||+|++||+|+|||+..++||..|.+.+|+++.+|+|||+||+|++|.+.++. |+||.
T Consensus       438 vl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~~k~Ih~  506 (506)
T KOG1335         438 VLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYDGKPIHF  506 (506)
T ss_pred             EEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             986278882788886269778899998998871864777864457898478999999988650687789


No 24 
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324   These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00  E-value=0  Score=759.71  Aligned_cols=444  Identities=31%  Similarity=0.495  Sum_probs=410.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf             3319999898668999999998799399993799---------7150251366737098999999999999866755816
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK---------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN   72 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~---------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~   72 (466)
                      -||+-|||||++|+.||+.+|.+|+||++-|...         -+||||+=+||||+|.|+|+++.-.++ +++..|||+
T Consensus         2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~l-edA~gYGW~   80 (478)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEEL-EDAKGYGWT   80 (478)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHH-HHHHCCCCE
T ss_conf             7630687067166899999987299089821567873512237746747882440750357212230233-555248846


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC---CCCCC--CCCCEEECCCCCCCC
Q ss_conf             -477532899999999999998777778764004310110011100222102357---52112--322100004676652
Q gi|254781053|r   73 -IASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG---SSSEE--TIEAKNIVIATGSEA  146 (466)
Q Consensus        73 -~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~---~~~~~--~i~ad~iviATGs~p  146 (466)
                       .++.++||++++..|+..+.++..-|...|+++++++++|.|+++++|||+|..   .+..+  +|+|+|++||||+||
T Consensus        81 i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrp  160 (478)
T TIGR01424        81 IVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRP  160 (478)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCC
T ss_conf             87211157789876577888866688899888533044304337836815797410378788316787759999877878


Q ss_pred             -C--CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             -4--4457665321002453057411111133321012344543320132201220111000011122122221122222
Q gi|254781053|r  147 -S--GLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLK  223 (466)
Q Consensus       147 -~--~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~  223 (466)
                       .  .+||      .++.+|||++|+|+.+|||++|+||||||+|||.+|+-||++|||+.|++.+|++||+|+...+.+
T Consensus       161 s~kP~lPG------~ElgITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~R~~~~~  234 (478)
T TIGR01424       161 SVKPELPG------HELGITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDDDMRAELAE  234 (478)
T ss_pred             CCCCCCCC------CCCCCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             78888568------521304132417200554689986760012022232367832523451665467686899999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCC----------C
Q ss_conf             222222223220023442014687216999721332110000023204531210367840000126764----------2
Q gi|254781053|r  224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR----------G  293 (466)
Q Consensus       224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~----------G  293 (466)
                      .|+++||+++..+.+++|++.+++..+...+++ ...++.+|.||+|+||.||+++||||++||++++.          |
T Consensus       235 ~le~~Gi~i~~~~~~~~i~~~~~GR~~~~~sGe-~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sieGPGystmg  313 (478)
T TIGR01424       235 ELEERGIRIVPKDSVTSIEKVDDGRLKVTLSGE-KDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIEGPGYSTMG  313 (478)
T ss_pred             HHHCCCEEEEECCHHHHHHCCCCCCEEEEEECC-CCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCCCCCCCCC
T ss_conf             875297389501044364207898789997468-9981654332320088776576361011506510101478744125


Q ss_pred             CCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC-
Q ss_conf             2333776333026848702433354344300012320120111-22222223333221000144551001478886234-
Q gi|254781053|r  294 CIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK-  371 (466)
Q Consensus       294 ~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~-  371 (466)
                      .|.||+|.|||.|+|||+||||++.+|+|||.+||..-++.-| +++++++|++|.++|||.||++.|||||+||+++- 
T Consensus       314 Ai~Vd~YS~T~~P~IyAvGDvTdRinLTPVAi~Ea~aFa~teF~gnpt~~~h~~vA~AVFS~P~~~~vGlsE~EA~~~~~  393 (478)
T TIGR01424       314 AIAVDEYSRTSVPSIYAVGDVTDRINLTPVAIREAAAFAETEFGGNPTEFDHDLVATAVFSQPPVGTVGLSEEEAREKFT  393 (478)
T ss_pred             CEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHC
T ss_conf             36651546788577788603125445784788764777645417789886702133633058871111067799998817


Q ss_pred             CCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHH
Q ss_conf             66589999604470344188983389999978998699999982998899999999998789878996378437788999
Q gi|254781053|r  372 KSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEA  451 (466)
Q Consensus       372 ~~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~  451 (466)
                      .++.|++.+|++.-....-.+.+.++|||+|.+++||||+||+||+|+||||.++.|+++|.|..|+..++.+|||.+|.
T Consensus       394 ~~i~vy~a~FrPMk~t~~G~qEk~lmKLvV~~~~~kv~Gah~~G~dAaEi~Q~~AIAlk~G~TK~~FD~T~avHPs~AEE  473 (478)
T TIGR01424       394 GDIEVYRAEFRPMKATFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGVAIALKMGATKKDFDSTVAVHPSSAEE  473 (478)
T ss_pred             CEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCEECCCCHHH
T ss_conf             91899982787743311387336888876447787388988737984899999999984688732154811006661321


Q ss_pred             HH
Q ss_conf             99
Q gi|254781053|r  452 VR  453 (466)
Q Consensus       452 l~  453 (466)
                      |-
T Consensus       474 lV  475 (478)
T TIGR01424       474 LV  475 (478)
T ss_pred             HC
T ss_conf             11


No 25 
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00  E-value=0  Score=757.66  Aligned_cols=450  Identities=29%  Similarity=0.470  Sum_probs=412.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC----CCC
Q ss_conf             3319999898668999999998799399993799715025136673709899999999999986675581647----753
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA----SCH   77 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~----~~~   77 (466)
                      .||.+|||||++|++.|.||+.+|+|++|||..+ +||||+|+||||+|.||++|++...+.++..+||+...    ...
T Consensus         2 ~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~-LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld~~~   80 (475)
T TIGR01421         2 EYDYLVIGGGSGGIASARRAAEHGAKALLVEEKK-LGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLDKEN   80 (475)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHC-CCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             7546998368615788898885076078762000-488068501137623200567778875221027854336410036


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC--CCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             --2899999999999998777778764004310110011100222--10235752-112322100004676652444576
Q gi|254781053|r   78 --LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN--KILVKGSS-SEETIEAKNIVIATGSEASGLPGM  152 (466)
Q Consensus        78 --~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~--~v~V~~~~-~~~~i~ad~iviATGs~p~~iP~~  152 (466)
                        +||+++.+.|+..+++++..|+..|++++||+++|+|+|++++  ||+|++.. ..+.|+|.||+||||++|. +|..
T Consensus        81 l~F~f~~l~~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nttevy~A~HIliATGG~p~-~phe  159 (475)
T TIGR01421        81 LKFNFKELKEKRDAYVDRLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENTTEVYTAPHILIATGGKPS-IPHE  159 (475)
T ss_pred             CEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCCCC-CCCC
T ss_conf             600779998766789999888752486505543898678874888963477364243025762705894487247-8754


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65321002453057411111133321012344543320132201220111000011122122221122222222222223
Q gi|254781053|r  153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i  232 (466)
                      +.-+..+.-.+||++|.|+++|+|++|||+||||+|||.+|+.||++.+|+.|.+++|+.||.-+++.+.+.+++.|+++
T Consensus       160 ~~IPG~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~~i~~~~~~~~~~~G~~v  239 (475)
T TIGR01421       160 ENIPGAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDSMISEKVVEEYEKEGLEV  239 (475)
T ss_pred             CCCCCCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             67784010577002002201787179990738988888887312640225773673667401466426689999679602


Q ss_pred             CCCHHHHHHHCCCCC--CEEEEEEECCC----CCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf             220023442014687--21699972133----211000002320453121036784000012676422333776333026
Q gi|254781053|r  233 QLNSKVSSVKKVKGK--AQVVYRSTDDE----PINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSIS  306 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~--~~v~~~~~~g~----~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p  306 (466)
                      |....+.+++++-++  ..+++.++.|.    ....++|.||||+||+||+++|+||++||++|++|+|+||+|.-|+++
T Consensus       240 h~~~~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR~Pn~~~L~le~~gv~ld~kg~i~vDeyQNT~v~  319 (475)
T TIGR01421       240 HKLSKPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWAIGRKPNTKGLGLEKVGVKLDEKGYIIVDEYQNTNVE  319 (475)
T ss_pred             CCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCC
T ss_conf             15660479984157864799996688865310234305678740588567355442132125668873887441067318


Q ss_pred             CCEEECCCCCCCCCCCEECCCCCCEEECCCCCC----CCCCCCCCCCCEEEHHHHHHHHHCHHHHH-HCCCC-EEEEEEE
Q ss_conf             848702433354344300012320120111222----22223333221000144551001478886-23466-5899996
Q gi|254781053|r  307 TIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK----GHVNYGIIPSVVYTHPEVASIGKTEEQLK-CEKKS-YKVGKFP  380 (466)
Q Consensus       307 ~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~----~~~~~~~ip~~vft~peia~vGlte~~a~-~~~~~-~~v~~~~  380 (466)
                      ||||+|||+|...|+|||+..||-+++.||+.+    .++||.+||++|||+|++++|||||+||- +.|.| +||++.+
T Consensus       320 gIYAlGDV~Gk~~LTPVAIaAGR~LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~Ai~~YG~e~vKvY~ss  399 (475)
T TIGR01421       320 GIYALGDVVGKVELTPVAIAAGRKLSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEAIEKYGKENVKVYKSS  399 (475)
T ss_pred             CEEEECCEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECC
T ss_conf             85872226811007737877303678763687300013465024880387377843003787899986087544374046


Q ss_pred             ECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf             0447034418898338999997899869999998299889999999999878987899637843778899999
Q gi|254781053|r  381 FSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR  453 (466)
Q Consensus       381 ~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~  453 (466)
                      |.+.+-|.....+++-.||||--+..||+|.|++|....||+|.||+||+||.|.-|+..++-+|||-||.|-
T Consensus       400 Ft~MY~A~~~~k~~~~~Klvcag~eEKvVGLH~~G~g~dEmLQGFAVAiKMGATKADFDntVAIHPTsSEElV  472 (475)
T TIGR01421       400 FTPMYYALTKEKQKCRMKLVCAGKEEKVVGLHGIGLGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELV  472 (475)
T ss_pred             CHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCEEECCCCCCCHHC
T ss_conf             4257888726888665178973898667877420452233231140243347854541570000777600000


No 26 
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338   This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=100.00  E-value=0  Score=674.18  Aligned_cols=448  Identities=29%  Similarity=0.455  Sum_probs=393.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--------CCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEE
Q ss_conf             331999989866899999999879939999379--------971502513667370989999999999998-66755816
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE--------KTYGGTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGIN   72 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~--------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~   72 (466)
                      +||+|||||||+||+||.+||++|++|+|+|-=        .-+||||+|+||||+|+|.+++.+ .+..+ ++..|||+
T Consensus         2 dyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPKKLMHqAa~~-G~~lklds~~YGWn   80 (513)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPKKLMHQAALL-GKALKLDSKKYGWN   80 (513)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH-HHHHHHHHHHCCCC
T ss_conf             64279985897346899999860991899963356988821476753575055483567888887-68875535651888


Q ss_pred             CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCC--C---CCCCCCCCEEECCCCCC
Q ss_conf             477---532899999999999998777778764004310110011100222102357--5---21123221000046766
Q gi|254781053|r   73 IAS---CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKG--S---SSEETIEAKNIVIATGS  144 (466)
Q Consensus        73 ~~~---~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~--~---~~~~~i~ad~iviATGs  144 (466)
                      ..+   .+.||+++.+.+++.++.++..|...|...+|.++++.|+|+|++++.|..  .   +.++.+++.+++||||.
T Consensus        81 ~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~kGd~~ke~~~sa~~~lIaTG~  160 (513)
T TIGR01438        81 VEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATDKGDKKKEEILSAKRVLIATGL  160 (513)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECCEEEEECCC
T ss_conf             53664322237899998864555400320000101540266300244278468999860678763204503636980478


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             52444576653210024530574111111333210123445433201322012201110000111221222211222222
Q gi|254781053|r  145 EASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI  224 (466)
Q Consensus       145 ~p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~  224 (466)
                      ||+ +|+ +++++.+..+||||+|.|.+.|.+.+|||+||+|+|+|.+|+.||.+||++.|+ -+|++||++++..+..+
T Consensus       161 RP~-yp~-~ipGaKEl~ItSDDlFsL~~~PGKTLvVGasYVALECaGFL~~~g~dV~V~VRS-I~LrGFDqdca~kv~eh  237 (513)
T TIGR01438       161 RPK-YPD-DIPGAKELSITSDDLFSLKKVPGKTLVVGASYVALECAGFLAALGLDVTVLVRS-ILLRGFDQDCAVKVKEH  237 (513)
T ss_pred             CCC-CCC-CCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEE-EECCCCCHHHHHHHHHH
T ss_conf             888-888-888840110130122036688686578776142357788986339964999988-52347577899999988


Q ss_pred             CCCCCCCCCCCHHHHHHHCCCC------CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCC
Q ss_conf             2222222322002344201468------721699972133211000002320453121036784000012676-422333
Q gi|254781053|r  225 MSKQGMNFQLNSKVSSVKKVKG------KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEI  297 (466)
Q Consensus       225 l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~v  297 (466)
                      |++.||.+..+..+.+++..++      +..+.+++.+|++..=++|.||||+||.|+++.||||++|+.+|+ +|.|.+
T Consensus       238 m~e~Gvkfk~~~~p~kve~~~~GtPGrlk~~v~ftD~~G~~~~eeYdTVl~AiGR~~~~~~lnLen~gv~~nk~~gKI~a  317 (513)
T TIGR01438       238 MKEQGVKFKEQVVPKKVEKVDSGTPGRLKVLVKFTDKDGNTIEEEYDTVLYAIGRKADLKKLNLENVGVKVNKKSGKILA  317 (513)
T ss_pred             HHCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf             64089688701467876651588995178999984578874442301156662587664431632132076155787750


Q ss_pred             CCCCEEECCCCEEECCCC-CCCCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHH-CCC-C
Q ss_conf             776333026848702433-35434430001232012011122222-2233332210001445510014788862-346-6
Q gi|254781053|r  298 GGQFQTSISTIYAIGDVV-RGPMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKC-EKK-S  373 (466)
Q Consensus       298 d~~~~Ts~p~IyA~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~-~~~-~  373 (466)
                      |+.-|||+|.|||+||+. +.+.|+|+|++.|+++|+.||+.... +||..||++|||..|++++|+|||+|-+ .|. +
T Consensus       318 de~~~tn~p~iyAvGDi~e~~~ELtPvAIqaG~lLA~RLf~~S~~i~dy~~vpTtvfTPlEyg~cGlsEEkA~ek~Ge~n  397 (513)
T TIGR01438       318 DELERTNVPSIYAVGDIVEDKLELTPVAIQAGKLLADRLFKDSKEIVDYENVPTTVFTPLEYGACGLSEEKAVEKYGEEN  397 (513)
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCHHHCCCCCCHHHHHHHHCCCC
T ss_conf             32335788827886456548655543778877999987414882688426778414441341236765789998739850


Q ss_pred             EEEEEEEECCC---------C-HHHHC-----CCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf             58999960447---------0-34418-----8983389999978-9986999999829988999999999987898789
Q gi|254781053|r  374 YKVGKFPFSAN---------G-RARSM-----NSIDGFVKILANE-KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSED  437 (466)
Q Consensus       374 ~~v~~~~~~~~---------~-ra~~~-----~~~~g~~kli~~~-~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~  437 (466)
                      ++|+...|.++         . |++-.     -...+++|+||.+ ++.||||.|++||+|+|++|.+|+|++-+++.+|
T Consensus       398 vEVfhs~F~plE~~~p~r~~~iraqkdeydldvs~~CyaK~VC~~~e~~rv~GfH~vGPNAgEV~QG~A~Alr~g~~k~d  477 (513)
T TIGR01438       398 VEVFHSEFTPLEYSVPSRKDSIRAQKDEYDLDVSSKCYAKVVCLKDEDERVVGFHFVGPNAGEVTQGYAVALRVGVKKKD  477 (513)
T ss_pred             EEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             79972013650489753566310123211222268514999832146872799975377625788898878754761466


Q ss_pred             HHCCCCCCCCHHHHHH
Q ss_conf             9637843778899999
Q gi|254781053|r  438 LARICHAHPTMSEAVR  453 (466)
Q Consensus       438 l~~~~~~hPt~~E~l~  453 (466)
                      |..+|.+||+.+|.|.
T Consensus       478 ldntIgIHP~~aE~F~  493 (513)
T TIGR01438       478 LDNTIGIHPVSAEEFV  493 (513)
T ss_pred             HCCCCEECCCCHHCEE
T ss_conf             2062300567710000


No 27 
>KOG0405 consensus
Probab=100.00  E-value=0  Score=652.91  Aligned_cols=444  Identities=30%  Similarity=0.466  Sum_probs=406.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC-CCCCCCH
Q ss_conf             331999989866899999999879939999379971502513667370989999999999998667558164-7753289
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI-ASCHLDL   80 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~-~~~~~d~   80 (466)
                      .||..+||||.+|+.+|++++++|.+|.|+|..-.+||||+|+||+|+|.||+++.... ..+++.+|||.. ...++||
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~-~~~da~~yG~~~~~~~~fdW   98 (478)
T KOG0405          20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSE-EMEDAKDYGFPINEEGSFDW   98 (478)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHH-HHHHHHHCCCCCCCCCCCCH
T ss_conf             23669984786136776778753853799863778674478604564136774445567-75456642985344467767


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999987777787640043101100111002221023575211-23221000046766524445766532100
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      +.+.+.++..+.+++.-|+..+.+.+|+++.|+|+|+++++++|+-.++. ..|++++++||||++|. +|.++   ..+
T Consensus        99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp---G~E  174 (478)
T KOG0405          99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP---GAE  174 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCC-CCCCC---CHH
T ss_conf             99875116899988789885423154069962678758994479953881578721408997378467-89998---523


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             24530574111111333210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  160 VIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       160 ~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      .-++||.+|+|+++|+|++|+|+||||+|||.+|+.||++++|+.|.+.+|+.||+++++.+.+.|+..||++|.++.++
T Consensus       175 ~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~  254 (478)
T KOG0405         175 LGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVT  254 (478)
T ss_pred             HCCCCCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHHCCEEECCCCCCE
T ss_conf             14166423141116851799746458877555775348703799961213303418889889987640452641455402


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      ++.+.+++..+.....+   ..-.+|.+|||+||.||+.+|+||+.|++++++|.|+||+|.+||+|+|||+||++|...
T Consensus       255 ~v~K~~~g~~~~i~~~~---~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~  331 (478)
T KOG0405         255 KVIKTDDGLELVITSHG---TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN  331 (478)
T ss_pred             EEEECCCCCEEEEEECC---CCCCCCEEEEEECCCCCCCCCCCHHCCEEECCCCCEEEECCCCCCCCCEEEECCCCCCEE
T ss_conf             35652787258997246---040354799871578774556622103066788988974222478872587303338474


Q ss_pred             CCCEECCCCCCEEECCCC--CCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCC--CCEEEEEEEECCCCHHHHCCCCCE
Q ss_conf             443000123201201112--2222223333221000144551001478886234--665899996044703441889833
Q gi|254781053|r  320 LAHKAEDEGIAVAEIISG--QKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEK--KSYKVGKFPFSANGRARSMNSIDG  395 (466)
Q Consensus       320 l~~~A~~~g~~aa~~i~~--~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~--~~~~v~~~~~~~~~ra~~~~~~~g  395 (466)
                      |+|+|.++|+..++.+|+  ++.+.||.++|++||++|+++.|||||+||-++.  .+++|+...|.+...+......+.
T Consensus       332 LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt  411 (478)
T KOG0405         332 LTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKT  411 (478)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCE
T ss_conf             30188764026777761689888666023866897058753125777999987275655898247742676763687642


Q ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf             8999997899869999998299889999999999878987899637843778899999
Q gi|254781053|r  396 FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR  453 (466)
Q Consensus       396 ~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~  453 (466)
                      +.||||..++.+++|.|++|+++.|++|.+++|+++|+|..|+..++.+|||.+|.|-
T Consensus       412 ~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElV  469 (478)
T KOG0405         412 LMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELV  469 (478)
T ss_pred             EEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHCCCEEECCCCHHHHE
T ss_conf             7999996687717899974598489973344110027544310451234677778823


No 28 
>KOG4716 consensus
Probab=100.00  E-value=0  Score=580.13  Aligned_cols=447  Identities=28%  Similarity=0.439  Sum_probs=389.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--------CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf             331999989866899999999879939999379--------971502513667370989999999999998667558164
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE--------KTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI   73 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~--------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~   73 (466)
                      +||++|||||.+|++||.+++.+|++|+++|--        .-+||||+|+||||+|.|..+ .+..+..+++..|||+.
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQA-allG~al~da~kyGW~~   97 (503)
T KOG4716          19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQA-ALLGEALHDARKYGWNV   97 (503)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHHHHHHHCCCC
T ss_conf             74479986885136677998860870799961245788874555854665365318988888-87778877788628777


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC
Q ss_conf             77--532899999999999998777778764004310110011100222102357521-123221000046766524445
Q gi|254781053|r   74 AS--CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEASGLP  150 (466)
Q Consensus        74 ~~--~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p~~iP  150 (466)
                      .+  .+.||..+.+..++.++.+++.++..+...+|+++++.+.|++++++..++.++ ++.++++++|||||-||+. |
T Consensus        98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY-p  176 (503)
T KOG4716          98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY-P  176 (503)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEEEECCEEEEEECCCCCC-C
T ss_conf             623355468999999987766235258987310101356021454266258985477845786145389972687789-9


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76653210024530574111111333210123445433201322012201110000111221222211222222222222
Q gi|254781053|r  151 GMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGM  230 (466)
Q Consensus       151 ~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV  230 (466)
                      +  ++.+.++.+||||+|.+...|.+.+|||+||+++|+|.+|+.||-+||+..|+ -+|++||+++++.+.+.|++.||
T Consensus       177 ~--IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gi  253 (503)
T KOG4716         177 D--IPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGI  253 (503)
T ss_pred             C--CCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCEEEEEE-EECCCCCHHHHHHHHHHHHHHCC
T ss_conf             9--99842521123321055689994489745134542135675338885799987-41025269999999999997097


Q ss_pred             CCCCCHHHHHHHCCCCCC-EEEEEEECC-CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCCCCCCEEECCC
Q ss_conf             232200234420146872-169997213-3211000002320453121036784000012676-4223337763330268
Q gi|254781053|r  231 NFQLNSKVSSVKKVKGKA-QVVYRSTDD-EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEIGGQFQTSIST  307 (466)
Q Consensus       231 ~i~~~~~v~~i~~~~~~~-~v~~~~~~g-~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~vd~~~~Ts~p~  307 (466)
                      ++...+.+.++++.+++. .|..++.+. +..+-++|.|+||+||.|+++.|||+++|++.++ .|.|.+|+.-+||+|+
T Consensus       254 kf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~  333 (503)
T KOG4716         254 KFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPY  333 (503)
T ss_pred             CEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf             33403353010220477279996125566444102232031224511010038875332532447864457677357871


Q ss_pred             CEEECCCC-CCCCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHH-CC-CCEEEEEEEECC
Q ss_conf             48702433-35434430001232012011122222-2233332210001445510014788862-34-665899996044
Q gi|254781053|r  308 IYAIGDVV-RGPMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKC-EK-KSYKVGKFPFSA  383 (466)
Q Consensus       308 IyA~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~-~~-~~~~v~~~~~~~  383 (466)
                      |||+||+. +.|.|+|+|.+.|+..|+.+++.... +||..+|++|||..|++.+||||++|-+ .| .+..|....|.+
T Consensus       334 vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P  413 (503)
T KOG4716         334 VYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKP  413 (503)
T ss_pred             EEEECCEECCCCCCCHHHHHHCHHHHHHHHCCCCEEEECCCCCEEEECCHHCCCCCCCHHHHHHHHCCCCEEEEECCCCC
T ss_conf             68850000698656525435356999987468615641267760353430002357777899987186537971103464


Q ss_pred             CCHHHHC-CCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHH
Q ss_conf             7034418-8983389999978-99869999998299889999999999878987899637843778899999
Q gi|254781053|r  384 NGRARSM-NSIDGFVKILANE-KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVR  453 (466)
Q Consensus       384 ~~ra~~~-~~~~g~~kli~~~-~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~  453 (466)
                      ..-.... +...+++|.||++ ++.||+|.|++||+|+|.|+.++.|++.++|..+|.+++.+|||.+|.|.
T Consensus       414 ~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft  485 (503)
T KOG4716         414 LEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFT  485 (503)
T ss_pred             EEEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHEE
T ss_conf             388755566771688775313687248989974686367778899999825539877521460665343326


No 29 
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00  E-value=0  Score=538.54  Aligned_cols=404  Identities=25%  Similarity=0.290  Sum_probs=308.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             9331999989866899999999879--9399993799715-025136673709899999999999986675581647753
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYG-GTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~G-GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      ||  |||||+||||++||.++++++  .+|+++|+++.++ +.|    |+|..           ..       -...   
T Consensus         1 Mk--vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp~~-----------~~-------~~~~---   53 (443)
T PRK09564          1 MK--IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLPYF-----------VG-------GFFD---   53 (443)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHHHH-----------HC-------CCCC---
T ss_conf             96--9999960999999999981493999999948898777655----20344-----------40-------5558---


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEE--CCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCC
Q ss_conf             289999999999999877777876400431011001-110--022210235752112--322100004676652444576
Q gi|254781053|r   78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARI--VSNNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGM  152 (466)
Q Consensus        78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~--~~~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~  152 (466)
                       +...++.+.       .    ..+++.++++..++ ..-  .+.+++.+......+  +++||++||||||+|+.+|..
T Consensus        54 -~~~~~~~~~-------~----~~~~~~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs~p~~p~i~  121 (443)
T PRK09564         54 -DPNNMIART-------P----EEFIKSGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIK  121 (443)
T ss_pred             -CHHHHHHHC-------H----HHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCC
T ss_conf             -989987419-------9----9999879999938889999746864899846876166134678999616752369988


Q ss_pred             CCCCCCEEEEE---ECCCCCCCC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCC
Q ss_conf             65321002453---057411111-----1333210123445433201322012201110000111221-22221122222
Q gi|254781053|r  153 SIDFDEQVIVS---STGALSFSS-----VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLK  223 (466)
Q Consensus       153 ~~~~~~~~~~t---~~~~~~l~~-----~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~  223 (466)
                      ....  ..+++   .+|+..+++     .||+++|||||+||+|+|++|+++|++||++++++++|+. +|+++++.+++
T Consensus       122 g~~~--~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~  199 (443)
T PRK09564        122 NINL--ENVYTLRSMEDGLALKKLLKKKEIKRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEE  199 (443)
T ss_pred             CCCC--CCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             7566--66567657899999999765127965999997099999999998669889999957834556678999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf             22222222322002344201468721699972133211000002320453121036784000012676422333776333
Q gi|254781053|r  224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT  303 (466)
Q Consensus       224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T  303 (466)
                      .|+++||++++++.+++++..++...+.  ..+   .++++|.||+|+|++||++.|  + ..+.++++|+|.||++|||
T Consensus       200 ~l~~~gv~i~~~~~v~~i~~~~~~~~v~--~~~---~~i~~D~vi~a~G~~Pn~~~l--~-~~~~~~~~g~I~Vde~~~T  271 (443)
T PRK09564        200 ELREKGVELHTSEFVKSLIGEDKVEGVV--TNK---GEYEADVVILSTGIKPNTEFL--E-DQLKTLKNGAIIVDEYGET  271 (443)
T ss_pred             HHHHCCCEEEECCEEEEEEECCCEEEEE--ECC---CEEEEEEEEECCCCCCCHHHH--H-CCCEECCCCEEEECCCCCC
T ss_conf             9997797999899899999269899999--779---889723899955885350787--6-2842034997986898027


Q ss_pred             ECCCCEEECCCCC-------C---CCCCCEECCCCCCEEECCCCCCCCCC-CCCCCCCEEEHHHHHHHHHCHHHHHHCCC
Q ss_conf             0268487024333-------5---43443000123201201112222222-33332210001445510014788862346
Q gi|254781053|r  304 SISTIYAIGDVVR-------G---PMLAHKAEDEGIAVAEIISGQKGHVN-YGIIPSVVYTHPEVASIGKTEEQLKCEKK  372 (466)
Q Consensus       304 s~p~IyA~GDv~g-------~---~~l~~~A~~~g~~aa~~i~~~~~~~~-~~~ip~~vft~peia~vGlte~~a~~~~~  372 (466)
                      |+|+|||+|||+.       .   .+|+|.|.+||+++++|+++++.++. +...|++.|++||+|+|||||+||++.|+
T Consensus       272 s~~~IyA~GD~~~~~~~~~~~~~~~~l~~~A~~~g~iaa~n~~g~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~g~  351 (443)
T PRK09564        272 SIENIYSAGDCATVYNIVSGKNVYVPLATTANKLGRIVGENLAGKDVYFKGTLGSACIKVLSLEAARTGLTEEEAKKLGI  351 (443)
T ss_pred             CCCCEEEEECCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCHHHHHHCCC
T ss_conf             88999999657310355578856865478899998999986059974667866665899947602420188999997799


Q ss_pred             CEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCCC-CCHHH
Q ss_conf             658999960447034418898338999997899869999998299-8899999999998789878996378437-78899
Q gi|254781053|r  373 SYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICHAH-PTMSE  450 (466)
Q Consensus       373 ~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~~h-Pt~~E  450 (466)
                      ++++..... .+.+++..+.++||+||++|++|++|||+|++|++ |+|+||.+++||++++|++||+.+.|.| |++|+
T Consensus       352 ~~~~~~~~~-~~~~~~~~~~~~~~~Kli~d~~t~~IlGa~ivg~~~a~e~I~~~a~AI~~~~tv~dL~~~~~ay~P~~s~  430 (443)
T PRK09564        352 DYKTVFIKD-KNHTNYYPGQEDIYVKLIYEAETKVLLGGQIIGKKGAVLRINALAVAITSKMTTQELGMMDFCYAPPFSR  430 (443)
T ss_pred             CEEEEEECC-CCHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCC
T ss_conf             769999667-8756527899739999999999898999999997349999999999998799799995586557999885


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254781053|r  451 AVRE  454 (466)
Q Consensus       451 ~l~~  454 (466)
                      .+..
T Consensus       431 ~~d~  434 (443)
T PRK09564        431 TWDA  434 (443)
T ss_pred             CHHH
T ss_conf             3429


No 30 
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00  E-value=0  Score=503.35  Aligned_cols=399  Identities=21%  Similarity=0.317  Sum_probs=296.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             9331999989866899999999879--939999379971502513667-3709899999999999986675581647753
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGC-IPSKALLHASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GC-iPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      || .+||||+|+||++||.++++++  .+|++||+++.+.    +..| +|.           .+           ....
T Consensus         1 M~-kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~----y~~~~lp~-----------~~-----------~~~~   53 (438)
T PRK13512          1 MP-KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPY-----------VI-----------GEVV   53 (438)
T ss_pred             CC-EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCHHHH-----------HH-----------CCCC
T ss_conf             98-0999898499999999999439199999996899888----76236679-----------87-----------7886


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCC
Q ss_conf             289999999999999877777876400431011001-1100--22210235752112--322100004676652444576
Q gi|254781053|r   78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGM  152 (466)
Q Consensus        78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~  152 (466)
                      -+...++.+.          -+.+.+..+|++..++ ..-+  ..+++.+......+  ++.||+|||||||+|+. |+.
T Consensus        54 ~~~~~~~~~~----------~~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs~p~~-~g~  122 (438)
T PRK13512         54 EDRKYALAYT----------PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF  122 (438)
T ss_pred             CCHHHHHCCC----------HHHHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCCCCCC-CCC
T ss_conf             6524322069----------89999877979992768999806667899950666742321345899967988876-687


Q ss_pred             CCCCCCEE-EEEECCCCCCCC-----CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65321002-453057411111-----133321012344543320132201220111000011122122221122222222
Q gi|254781053|r  153 SIDFDEQV-IVSSTGALSFSS-----VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMS  226 (466)
Q Consensus       153 ~~~~~~~~-~~t~~~~~~l~~-----~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~  226 (466)
                      +  .++.. +.+.+|+..+++     .+|+++|||||+||+|+|..|+++|++||++++++++++.+|+++++.+++.|+
T Consensus       123 ~--~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~  200 (438)
T PRK13512        123 E--SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELD  200 (438)
T ss_pred             C--CCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             8--99879979999999999988617997799989558999999999972990899993573120049999999999998


Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf             22222322002344201468721699972133211000002320453121036784000012676422333776333026
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSIS  306 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p  306 (466)
                      ++||++++++++++++..    .+++.+  |  ..+++|.|++|+|++||++.  ++..|++++++|+|+||++||||+|
T Consensus       201 ~~gv~~~~~~~v~~i~~~----~v~~~~--g--~~~~~D~vi~a~G~~Pn~~~--~~~~gi~~~~~G~I~Vd~~~~Ts~~  270 (438)
T PRK13512        201 KREIPYRLNEEIDAINGN----EITFKS--G--KVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVP  270 (438)
T ss_pred             HCCCEEEECCEEEEEECC----EEEEEE--C--CEEEECEEEEEEECCCCHHH--HHHCCCCCCCCCCEEECCCEECCCC
T ss_conf             689999958779999797----999932--8--89740789996710027367--8853876578872987882214899


Q ss_pred             CCEEECCCCCC----------CCCCCEECCCCCCEEECCCCCCCCCCCCC--CCCCEEEHHHHHHHHHCHHHHHHCCCCE
Q ss_conf             84870243335----------43443000123201201112222222333--3221000144551001478886234665
Q gi|254781053|r  307 TIYAIGDVVRG----------PMLAHKAEDEGIAVAEIISGQKGHVNYGI--IPSVVYTHPEVASIGKTEEQLKCEKKSY  374 (466)
Q Consensus       307 ~IyA~GDv~g~----------~~l~~~A~~~g~~aa~~i~~~~~~~~~~~--ip~~vft~peia~vGlte~~a~~~~~~~  374 (466)
                      ||||+|||+..          .||++.|.+||+++++|+.|.+..-.++.  .+.+.|++|++|+|||||+||++.+  +
T Consensus       271 ~IyA~GD~a~~~~~~t~~~~~~pla~~A~~~g~iaa~nl~g~~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~~--~  348 (438)
T PRK13512        271 NIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFD--Y  348 (438)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCC--C
T ss_conf             99999425673013478753123517889999999998549986666882677789988862699444598871089--6


Q ss_pred             EEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCC-CCCHHHHH
Q ss_conf             8999960447034418898338999997899869999998299-889999999999878987899637843-77889999
Q gi|254781053|r  375 KVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICHA-HPTMSEAV  452 (466)
Q Consensus       375 ~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~~-hPt~~E~l  452 (466)
                      ++.+......++ +..+.+++++||++|++|+||||+|++|++ ++|+||.+++||++++|++||..+-+. +|.+|..+
T Consensus       349 ~~v~~~~~~~~~-~~~~~~~~~~Kli~d~~t~~ILGaqiig~~~~~~~In~la~AI~~~~Tv~dL~~~d~~y~Ppfs~~~  427 (438)
T PRK13512        349 KMVEVTQGAHAN-YYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPK  427 (438)
T ss_pred             EEEEEECCCCCC-CCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf             199980587613-0799975999999999989899999999756999999999999879979998507273799989850


No 31 
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00  E-value=0  Score=503.87  Aligned_cols=392  Identities=23%  Similarity=0.296  Sum_probs=298.9

Q ss_pred             HHHHHHHHCC--CCEEEEECCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999999879--939999379971502513667-3709899999999999986675581647753289999999999999
Q gi|254781053|r   16 ACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGC-IPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMSYKKSIVE   92 (466)
Q Consensus        16 ~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GC-iPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~v~   92 (466)
                      |||.+++++.  .+|+|||+++.+.    +..| +|            +.   ..  | ...    +.+.++.+      
T Consensus         1 saA~~~rrl~p~~eI~vi~~~~~~~----y~~c~lp------------~~---l~--g-~i~----~~~~l~~~------   48 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTEDVS----FANCGLP------------YV---IG--G-VID----DRNKLLAY------   48 (427)
T ss_pred             CHHHHHHHHCCCCCEEEEECCCCCC----CHHHHHH------------HH---HC--C-CCC----CHHHCCCC------
T ss_conf             9779888439899789996799864----3564556------------97---77--7-227----87872167------


Q ss_pred             HHHHHHHHHHHCCCEEEEEEE-EEECC--CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCEEEE-EECC
Q ss_conf             877777876400431011001-11002--2210235752112--3221000046766524445766532100245-3057
Q gi|254781053|r   93 SNTQGINFLLKKNKIITYHGS-ARIVS--NNKILVKGSSSEE--TIEAKNIVIATGSEASGLPGMSIDFDEQVIV-SSTG  166 (466)
Q Consensus        93 ~~~~~~~~~~~~~~V~~~~g~-a~~~~--~~~v~V~~~~~~~--~i~ad~iviATGs~p~~iP~~~~~~~~~~~~-t~~~  166 (466)
                          .-+.+.++.+|++..++ ..=+|  .++|.+......+  ++.||+|||||||+|+.+|....+..+...+ +.+|
T Consensus        49 ----~~e~~~~~~~I~v~~~~~V~~ID~~~k~V~~~~~~~~~~~~~~YDkLiiATGs~p~~p~i~g~~~~~V~~lr~~~D  124 (427)
T TIGR03385        49 ----TPEKFIEKRGIDVKTNHEVIKVNDERQTVVVKNNKTNETYEESYDYLILSPGASPIIPNIEGINLDITFTLRNLED  124 (427)
T ss_pred             ----CHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCHHH
T ss_conf             ----9899998789499918979999899999999667989664457899999769985679999867898899799999


Q ss_pred             CCCCC-----CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             41111-----1133321012344543320132201220111000011122-12222112222222222222322002344
Q gi|254781053|r  167 ALSFS-----SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-GMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       167 ~~~l~-----~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      +..++     ..|++++|||||+||+|+|+.|+++|++||++++++++|+ .+|+++++.+++.|+++||++++++.+++
T Consensus       125 a~~i~~~l~~~~~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~  204 (427)
T TIGR03385       125 TDAIKQYIDANKVDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDS  204 (427)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEE
T ss_conf             99999987507998899999639999999999976998999984683365548999999999999975979997988999


Q ss_pred             HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC---
Q ss_conf             20146872169997213321100000232045312103678400001267642233377633302684870243335---
Q gi|254781053|r  241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG---  317 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~---  317 (466)
                      ++..+  ..+.+.  ++  .++++|.|++|+|++||++.  ++++|++++++|.|+||++||||+|+|||+|||+..   
T Consensus       205 i~~~~--~~~~l~--~g--~~i~~D~vi~a~G~~Pn~~~--~~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA~GD~a~~~~~  276 (427)
T TIGR03385       205 IIGEE--RVGVIT--SG--GVYQADMVILAIGVKPNSEL--AKDSQLKLGRTGAIWVNEKFQTSVPNIYAAGDVAESKNI  276 (427)
T ss_pred             EECCC--CEEEEE--CC--CEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEECCCCCCCCCCCEEEEECEEECCCC
T ss_conf             98788--789994--69--99972899988774676424--325561665888685276554368999998210411455


Q ss_pred             -------CCCCCEECCCCCCEEECCCCCCCCCC-CCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHH
Q ss_conf             -------43443000123201201112222222-3333221000144551001478886234665899996044703441
Q gi|254781053|r  318 -------PMLAHKAEDEGIAVAEIISGQKGHVN-YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARS  389 (466)
Q Consensus       318 -------~~l~~~A~~~g~~aa~~i~~~~~~~~-~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~  389 (466)
                             .+|++.|.+||+++++|++|++.++. +...|.++|++||+|+|||||+||++.|+++++..+.....++ ..
T Consensus       277 ~t~~~~~~~l~~~A~~qgriaa~ni~g~~~~~~~~~~~~~~~~~~~~iA~vGlTE~eA~~~g~~~~~~~~~~~~~~~-~~  355 (427)
T TIGR03385       277 VTKKPAWIPLAWGANKMGRIVGENIAGNDIEFKGTLGTSITKFFDLTIASTGVTENEAKRLNIDYKTVFVKAKTHAN-YY  355 (427)
T ss_pred             CCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCHHH-HC
T ss_conf             56884234156899999999999745998677886676689988925599738499998779987999986687276-54


Q ss_pred             CCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHH
Q ss_conf             8898338999997899869999998299-88999999999987898789963784-377889999
Q gi|254781053|r  390 MNSIDGFVKILANEKSDRVEGVHIIGGS-AGEMIHEAAVLMEFGGSSEDLARICH-AHPTMSEAV  452 (466)
Q Consensus       390 ~~~~~g~~kli~~~~~~~ilG~~~vg~~-a~eli~~~a~ai~~~~t~~~l~~~~~-~hPt~~E~l  452 (466)
                      .+.+++++||++|++|+||||+|++|++ ++++||.+++||++++|++||+++-+ +||+++..+
T Consensus       356 ~~~~~~~vKli~d~~t~rILGaqiiG~~~a~~~I~~la~AI~~g~Tv~dL~~~d~~y~P~f~~~~  420 (427)
T TIGR03385       356 PGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVW  420 (427)
T ss_pred             CCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf             79986899999999989899899998721999999999999879979998468465799999861


No 32 
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864   Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione   Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=100.00  E-value=0  Score=486.25  Aligned_cols=441  Identities=27%  Similarity=0.470  Sum_probs=386.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC
Q ss_conf             31999989866899999999879-9399993799--------71502513667370989999999999998667558164
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEK--------TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINI   73 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~--------~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~   73 (466)
                      ||+||||+|.+|+.|.+.++.+- ++|++||-..        .+||||+|+||+|+|.|+..++..+.+ +....|||+.
T Consensus         4 ~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~-resaGfGWe~   82 (486)
T TIGR01423         4 YDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTL-RESAGFGWEL   82 (486)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHH-HHHCCCCEEC
T ss_conf             578998247774100101233210316899842247993000108726872343630011005788888-7623764000


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCCCC-----CCCCCCEEECCCCCCC
Q ss_conf             77--53289999999999999877777876400-4310110011100222102357521-----1232210000467665
Q gi|254781053|r   74 AS--CHLDLKKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSNNKILVKGSSS-----EETIEAKNIVIATGSE  145 (466)
Q Consensus        74 ~~--~~~d~~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~~~v~V~~~~~-----~~~i~ad~iviATGs~  145 (466)
                      ..  .+.+|+.++.-++.-+....+.++.++++ .|.+++.|++.+.+.+++.|+....     .+++.+++++|||||-
T Consensus        83 d~~~~~~nWk~liaakn~av~~in~sye~mf~dteGl~f~~G~Gal~~~~~v~vre~adP~s~v~e~l~~e~i~~atGsW  162 (486)
T TIGR01423        83 DAESVKANWKALIAAKNKAVLDINDSYEDMFKDTEGLEFFLGFGALEDKNVVLVRESADPKSKVKERLDAEYILLATGSW  162 (486)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf             32454466789998766777767655777741024402220112001475799962788525786510433599971677


Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC---CCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             244457665321002453057411111133321012344543320132201---22011100001112212222112222
Q gi|254781053|r  146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRL---GSCVKIIEHSGTILNGMDKEIAAHCL  222 (466)
Q Consensus       146 p~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~l---G~~Vtli~~~~~ll~~~d~~~~~~~~  222 (466)
                      |..+.   .+. ...+++|+++|.|++.|+|++.+|||||.+|||.+|+.+   |-+|+|.+|.+.+|++||.++.+.+.
T Consensus       163 Pq~l~---i~G-~~~Ci~sneafyl~e~P~r~l~vGGG~is~efaGifnayk~~GG~v~l~yr~~~ilrGfd~~lr~~lt  238 (486)
T TIGR01423       163 PQMLK---IEG-IELCISSNEAFYLEEAPKRVLTVGGGYISVEFAGIFNAYKAVGGKVDLAYRNDMILRGFDSELRKELT  238 (486)
T ss_pred             CCCCC---CCC-CCEEEECCCCEECCCCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCEEEECCCHHHHHHHH
T ss_conf             32003---566-42033023201004788548986474799862001232315797589987387033032278999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             22222222232200234420146872-16999721332110000023204531210367840000126764223337763
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF  301 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~  301 (466)
                      ++|..+||++.++..+.+++...++. .+++..+    .+++.|.|++|+||.|+++.|.|+++|+++.++|.|.||+|.
T Consensus       239 ~ql~anGi~~~t~enP~k~~~n~dG~~hv~fesG----~~~d~dvvm~aiGr~Pr~~~lql~~~Gv~~~~~Gai~vd~~s  314 (486)
T TIGR01423       239 KQLVANGIDVRTNENPAKVEKNADGSKHVVFESG----KELDVDVVMLAIGRLPRSQTLQLDKVGVELADKGAIKVDEYS  314 (486)
T ss_pred             HHHHHCCCEEEECCCCHHEEECCCCCEEEEECCC----CCCCEEEEEEEECCCCCCCEEEEECCCEEEECCCCEEECCHH
T ss_conf             8876266136644770011007898446886267----733401788762367764313400003011137644430000


Q ss_pred             EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC-CCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEE
Q ss_conf             3302684870243335434430001232012011122-222223333221000144551001478886234665899996
Q gi|254781053|r  302 QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ-KGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFP  380 (466)
Q Consensus       302 ~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~-~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~  380 (466)
                      +|+++||||+||++++.+|+|+|..+|....+.+++. ++..|+..+..++|+.|+++.+|++|++|.+....+.|+...
T Consensus       315 ~tnv~niyaiGdvt~r~mltPvaineGa~~vdt~f~~kPr~tdht~va~avfsiPP~G~CG~~ee~aak~~~~vavy~s~  394 (486)
T TIGR01423       315 KTNVDNIYAIGDVTDRVMLTPVAINEGAAVVDTVFASKPRKTDHTKVASAVFSIPPIGVCGLVEEEAAKKYEKVAVYLSS  394 (486)
T ss_pred             CCCCCCEEEECCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEEHH
T ss_conf             04633135520213605762232015640101322378875433122445550587640354201553202002222011


Q ss_pred             ECCCCHHHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             044703441889-833899999789986999999829988999999999987898789963784377889999
Q gi|254781053|r  381 FSANGRARSMNS-IDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV  452 (466)
Q Consensus       381 ~~~~~ra~~~~~-~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l  452 (466)
                      |.++-....-.. .+-.+|++.+..+|.++|.|++|+...|+|+.++++|+.+..+.|+-+++..|||.+|.|
T Consensus       395 ftPlmhnisGs~ykkf~~~i~t~h~dG~v~Gvh~lGdssPeiiq~v~iC~k~~akisdfyntiGvhPtsaeel  467 (486)
T TIGR01423       395 FTPLMHNISGSKYKKFVVKIVTDHADGEVLGVHLLGDSSPEIIQAVAICLKLNAKISDFYNTIGVHPTSAEEL  467 (486)
T ss_pred             CCHHHHHCCCCHHHEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHH
T ss_conf             0002321242014213233343058860899997448876688764432210450102321035565664554


No 33 
>PRK04965 nitric oxide reductase; Provisional
Probab=100.00  E-value=0  Score=356.19  Aligned_cols=356  Identities=20%  Similarity=0.280  Sum_probs=250.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             93319999898668999999998799--3999937997150251366737098999999999999866755816477532
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |+=-|||||+|+||++||.++++++.  +++||++++..    .+.-|+-|+.|..               +    .   
T Consensus         1 M~~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~----~Y~rp~Ls~~~~~---------------~----~---   54 (378)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNKPDLSHVFSQ---------------G----Q---   54 (378)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC----CCCCCCCHHHHCC---------------C----C---
T ss_conf             989999998829999999999711949869999899998----8767816698828---------------9----9---


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999999999877777876400431011001-11002221023575211232210000467665244457665321
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      +...+..          .....+.++.+|++..+. ..-+|...-.|..+  .+++.||++||||||+|+.+|...   .
T Consensus        55 ~~~~l~~----------~~~~~~~~~~~I~l~~~~~V~~ID~~~k~V~~~--g~~~~YDkLVLATGa~p~~ppi~G---~  119 (378)
T PRK04965         55 RADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQ--GNQWQYDKLVLATGASAFVPPVPG---R  119 (378)
T ss_pred             CHHHHHC----------CCHHHHHHHCCEEEECCCEEEEECCCCCEEEEC--CCEEECCEEEEECCCCCCCCCCCC---C
T ss_conf             9689531----------798999874897998698999984646379958--919846879993588755789999---6


Q ss_pred             CEEEEEECCCCC---CC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             002453057411---11---11333210123445433201322012201110000111221-222211222222222222
Q gi|254781053|r  158 EQVIVSSTGALS---FS---SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGM  230 (466)
Q Consensus       158 ~~~~~t~~~~~~---l~---~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV  230 (466)
                       ..+++.+++.+   ++   ...++++|||||+||+|+|..|+..|.+||++++.+++|++ +|+++++.+++.|+++||
T Consensus       120 -~~v~tlr~l~d~~~~~~~l~~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~~~~~l~~~l~~~GV  198 (378)
T PRK04965        120 -ELMLTLNSQQEYRACETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGV  198 (378)
T ss_pred             -EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf             -4799819999999999775149789998983889999999996798899976667442211789999999999997890


Q ss_pred             CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEE
Q ss_conf             23220023442014687216999721332110000023204531210367840000126764223337763330268487
Q gi|254781053|r  231 NFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYA  310 (466)
Q Consensus       231 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA  310 (466)
                      ++++++.+++++..+++..+.+.+  |  .++++|.|++|+|.+||++.  ++.+|++++ +| |.||++||||.|||||
T Consensus       199 ~~~~~~~v~~i~~~~~~~~v~l~d--G--~~i~aD~Vv~a~Gv~Pnt~l--a~~aGl~~~-~G-I~Vd~~l~TS~p~IyA  270 (378)
T PRK04965        199 HLLLKSQLQGLEKTESGIRATLDD--G--RSIEVDAVIAAAGLRPNTAL--ARRAGLAVN-RG-ICVDSYLQTSAPDIYA  270 (378)
T ss_pred             EEEECCEEEEEEECCCEEEEEECC--C--CEEECCEEEECCCCCCCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCEEE
T ss_conf             999698899999659989999859--9--79984999989477548278--986698669-98-8999998549999999


Q ss_pred             ECCCCCC----CCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCEEE-HHHHHHHHHCHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             0243335----434430001232012011122222223333221000-14455100147888623466589999604470
Q gi|254781053|r  311 IGDVVRG----PMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYT-HPEVASIGKTEEQLKCEKKSYKVGKFPFSANG  385 (466)
Q Consensus       311 ~GDv~g~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft-~peia~vGlte~~a~~~~~~~~v~~~~~~~~~  385 (466)
                      +|||+..    +++..-++.|++++|++|.|.+.++.+...|..+-| ..++...|-+..+      +           .
T Consensus       271 ~GDcAe~~g~~~~~v~p~~~~a~~lA~~l~G~~~~~~~~~~~~~~K~~~~~i~~~g~~~~~------~-----------~  333 (378)
T PRK04965        271 LGDCAEINGQVLPFLQPIQLSANALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ------D-----------L  333 (378)
T ss_pred             EEEEEEECCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEECCCCCCC------C-----------C
T ss_conf             8752898999750289999999999997079985310487358985068512864788899------8-----------4


Q ss_pred             HHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHH
Q ss_conf             344188983389999978998699999982998899999
Q gi|254781053|r  386 RARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHE  424 (466)
Q Consensus       386 ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~  424 (466)
                      ......+.+|..+.++++ +++|+|+-++|..+.+-..+
T Consensus       334 ~~~~~~~~~g~~~~~~~~-~g~l~G~vl~Gd~~~~~~~l  371 (378)
T PRK04965        334 RWQINAESQGMVAKAFDE-AGQLRGFVVSEDRMKEAFPL  371 (378)
T ss_pred             EEEEEECCCCEEEEEECC-CCCEEEEEEECHHHHHHHHH
T ss_conf             399995599808999946-99699999978888877788


No 34 
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00  E-value=5.6e-45  Score=345.92  Aligned_cols=365  Identities=18%  Similarity=0.201  Sum_probs=247.7

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             93-319999898668999999998799--399993799715025136673709899999999999986675581647753
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      |+ ++|||||+|+||++||..+++.|.  +++||++++.+    .+.-|.=||.++..                  ..  
T Consensus         1 M~~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~----PY~Rp~Lsk~~l~~------------------~~--   56 (400)
T PRK09754          1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL----PYERPPLSKSMLLE------------------DS--   56 (400)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC----CCCCHHCCHHHHCC------------------CC--
T ss_conf             9967299997759999999999806949979999899999----88651073998769------------------97--


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             289999999999999877777876400431011001-1100222102357521123221000046766524445766532
Q gi|254781053|r   78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDF  156 (466)
Q Consensus        78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~  156 (466)
                         +...        .+.  -..++++.+|++..|. +.-++...-.|...++ +++.||++|||||++|+.+|..+...
T Consensus        57 ---~~~~--------~l~--~~~~y~~~~I~l~~g~~v~~id~~~~~V~l~~g-~~~~YD~LviATGa~p~~lp~~~~~~  122 (400)
T PRK09754         57 ---PQLQ--------QVL--PANWWQENNVHLHSGVTIKTLGRDTRELVLTNG-ESWHWDQLFIATGAAARPLPLLDALG  122 (400)
T ss_pred             ---HHHH--------HCC--CHHHHHHCCCEEECCCEEEEECCCCCEEEECCC-CEEECCEEEECCCCCCCCCCCCCCCC
T ss_conf             ---2443--------248--987998789699889889997188988998799-88872605887788875689988888


Q ss_pred             CCEEEE-EECCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             100245-3057411111---1333210123445433201322012201110000111221-2222112222222222222
Q gi|254781053|r  157 DEQVIV-SSTGALSFSS---VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMN  231 (466)
Q Consensus       157 ~~~~~~-t~~~~~~l~~---~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV~  231 (466)
                      ++...+ |.+|+..+++   ..++++|||||+||+|+|..++++|.+||++++.+++|++ +++++++.+.+.++++||+
T Consensus       123 ~~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~  202 (400)
T PRK09754        123 ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVR  202 (400)
T ss_pred             CCEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             99899779999999998761587399988558999999999975994899953463410026989999999999978989


Q ss_pred             CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE
Q ss_conf             32200234420146872169997213321100000232045312103678400001267642233377633302684870
Q gi|254781053|r  232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI  311 (466)
Q Consensus       232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~  311 (466)
                      +++++.++++.. ++..  .+...+|  .++++|.|++++|.+||++.  ++.+|++.+  |.|.||++||||.|+|||+
T Consensus       203 ~~~~~~v~~~~~-g~~~--~v~l~~G--~~l~aD~VivaiGv~Pnt~l--a~~agL~~~--~GI~VD~~~~Ts~p~IyAa  273 (400)
T PRK09754        203 ILLNNAIEHVVD-GEKV--ELTLQSG--ETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAG  273 (400)
T ss_pred             EEECCEEEEEEC-CCEE--EEEECCC--CEEECCEEEECCCCCCCHHH--HHHCCCCCC--CEEEECCCCCCCCCCEEEE
T ss_conf             995875899978-9779--9998689--99985899989767537589--987799759--9399997876489899999


Q ss_pred             CCCCCCCC-------C--CCEECCCCCCEEECCCCCCCCCCCCCCCCCEEEH---HHHHHHHHCHHHHHHCCCCEEEEEE
Q ss_conf             24333543-------4--4300012320120111222222233332210001---4455100147888623466589999
Q gi|254781053|r  312 GDVVRGPM-------L--AHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTH---PEVASIGKTEEQLKCEKKSYKVGKF  379 (466)
Q Consensus       312 GDv~g~~~-------l--~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~vft~---peia~vGlte~~a~~~~~~~~v~~~  379 (466)
                      |||+..+.       +  .+.|..||++||+||.|.+.++  ..+||. ||+   -.+-.+|.+.      +.+.. .+-
T Consensus       274 GDvA~~~~~~g~~~r~e~w~~A~~qg~~aa~nm~G~~~~~--~~~P~f-wsdq~~~~lq~~G~~~------~d~~~-~~g  343 (400)
T PRK09754        274 GDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPL--LPPPWF-WSDQYSDNLQFIGDMR------GDDWL-CRG  343 (400)
T ss_pred             ECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCE-EEHHCCCCEEEEECCC------CCEEE-EEE
T ss_conf             5520354888888772365788899999999842999887--899847-7011598649986799------97599-982


Q ss_pred             EECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Q ss_conf             604470344188983389999978998699999982998899999999998789878
Q gi|254781053|r  380 PFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSE  436 (466)
Q Consensus       380 ~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~  436 (466)
                      +          .+...|+.+++ + +++++|+-.++.  ..-+....-+|+.+.+++
T Consensus       344 d----------~~~~~~~~~~~-~-~~~lv~~~~~n~--~~~~~~~r~li~~~~~~~  386 (400)
T PRK09754        344 N----------PETQKAIWFNL-Q-NGVLIGAVTLNQ--GREIRPIRKWIQSGKTFD  386 (400)
T ss_pred             C----------CCCCEEEEEEE-E-CCEEEEEEEECC--HHHHHHHHHHHHCCCCCC
T ss_conf             2----------79975999998-1-998999998688--389999999997887889


No 35 
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00  E-value=1.9e-42  Score=327.57  Aligned_cols=291  Identities=27%  Similarity=0.376  Sum_probs=209.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             319999898668999999998799399993799715---02513667370989999999999998667558164775328
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG---GTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      |||+||||||||++||++++|.+++++|||+.. .|   |.=..           +    ..+ .+.+  |.   ...+.
T Consensus         1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~-~G~aGGql~~-----------T----~~v-ENYP--Gf---~e~i~   58 (321)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGME-PGIAGGQLTT-----------T----TEV-ENYP--GF---PEGIS   58 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCC-CCCCCCCCCC-----------C----CEE-ECCC--CC---CCCCC
T ss_conf             928998478678889999887467278983577-7745553332-----------2----065-1368--68---88766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEE-ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--C-CCCC
Q ss_conf             9999999999999877777876400-43101100111-0022210235752112322100004676652444--5-7665
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSAR-IVSNNKILVKGSSSEETIEAKNIVIATGSEASGL--P-GMSI  154 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~-~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P-~~~~  154 (466)
                      -..+++..++...++-.    .... ..|..+.-..+ +- +..+.|.+.   ++|++|.+|||||++++++  | +. .
T Consensus        59 G~~L~~~M~~Qa~~fG~----~~~~G~~v~~v~~~~~~yE-~~~F~~~~~---~~y~a~avIiAtGa~~r~lg~~kGE-~  129 (321)
T TIGR01292        59 GPELMEKMKEQAKKFGA----EIIYGEEVIRVDKSDRAYE-SDPFKVKTG---KEYTAKAVIIATGAEARKLGIPKGE-D  129 (321)
T ss_pred             HHHHHHHHHHHHHHCCC----CEEECCEEEEEECCCCCCC-CCEEEEEEC---CEEEEEEEEEECCCHHHHCCCCCCH-H
T ss_conf             28899999999987067----3662670568633788436-610389717---5688658999138715423788664-5


Q ss_pred             CCCCE--EEE-EECC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             32100--245-3057--41111113332101234454332013220122011100001112212222112222222222-
Q gi|254781053|r  155 DFDEQ--VIV-SSTG--ALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-  228 (466)
Q Consensus       155 ~~~~~--~~~-t~~~--~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-  228 (466)
                      ++.++  .++ ++|.  .|- +.  |+|+|||||..|+|=|.+|++++++||||+|+|.+-      ....++++++++ 
T Consensus       130 ef~GrGVSyCA~CDGA~~ff-k~--K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~fR------A~k~~~~r~~~~~  200 (321)
T TIGR01292       130 EFLGRGVSYCATCDGASPFF-KN--KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKFR------AEKILLDRLKKNP  200 (321)
T ss_pred             HHCCCCEEEEEHHCCCCHHH-CC--CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC------CCHHHHHHHHHCC
T ss_conf             53268666722310540120-59--889998798248888899985387679997798636------3289998998378


Q ss_pred             --CCCCCCCHHHHHHHCCC--CCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCCCCCC--
Q ss_conf             --22232200234420146--8721699972-1332110000023204531210367840000-12676422333776--
Q gi|254781053|r  229 --GMNFQLNSKVSSVKKVK--GKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIEIGGQ--  300 (466)
Q Consensus       229 --gV~i~~~~~v~~i~~~~--~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~vd~~--  300 (466)
                        +|+|++|++|++|..++  ....|.+++. ++++.++++|-|++++|..|||+.  |+..| +++|+.|+|+||+.  
T Consensus       201 eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~D~~GyI~t~~~~G  278 (321)
T TIGR01292       201 EGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLELDEGGYIVTDEGLG  278 (321)
T ss_pred             CCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEECCCCCEEECCCCC
T ss_conf             98789964868999961783155335899623884889984447898412032057--6507834676998688617548


Q ss_pred             --CEEECCCCEEECCCCC--CCCCCCEECCCCCCEEECC
Q ss_conf             --3330268487024333--5434430001232012011
Q gi|254781053|r  301 --FQTSISTIYAIGDVVR--GPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       301 --~~Ts~p~IyA~GDv~g--~~~l~~~A~~~g~~aa~~i  335 (466)
                        ||||+|+|||||||.+  .+..+-+|.-+|.+||..+
T Consensus       279 n~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a  317 (321)
T TIGR01292       279 NTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSA  317 (321)
T ss_pred             CEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHH
T ss_conf             612306686897304406886137678700068999999


No 36 
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00  E-value=2.9e-42  Score=326.13  Aligned_cols=283  Identities=23%  Similarity=0.316  Sum_probs=190.6

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC---CCHHHHHHHHHHHHHHHHHHHHCCEECCC
Q ss_conf             93--31999989866899999999879939999379971502513667---37098999999999999866755816477
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC---IPSKALLHASEMYSHIAKEAGDLGINIAS   75 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC---iPsK~l~~~a~~~~~~~~~~~~~g~~~~~   75 (466)
                      |.  ||+|||||||||++||++++|+|++|++||++. +||+|.....   .|...-+...++...+.+++..|      
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~-~GGqi~~t~~VeNYPG~~~isG~eL~~~m~~qA~~~------   73 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDF------   73 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHC------
T ss_conf             9844729999956889999999997899679996688-686556368568788877986899999999999977------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CC
Q ss_conf             532899999999999998777778764004310110011100--22210235752112322100004676652444--57
Q gi|254781053|r   76 CHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PG  151 (466)
Q Consensus        76 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~  151 (466)
                                                    |+++..+...-+  +.....|.+.+  .+|+++.+|||||++|+.+  ||
T Consensus        74 ------------------------------Gve~~~~~V~~i~~~g~~k~V~t~~--g~~~ak~VIIATGa~pr~LgipG  121 (555)
T TIGR03143        74 ------------------------------GVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPG  121 (555)
T ss_pred             ------------------------------CCEEEEEEEEEEECCCCCEEEEECC--CEEEECEEEECCCCCCCCCCCCC
T ss_conf             ------------------------------9699965699997379958999889--78996979999999714389997


Q ss_pred             CCC-CCCCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             665-32100245-30574111111333210123445433201322012201110000111221222211222222-2222
Q gi|254781053|r  152 MSI-DFDEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKI-MSKQ  228 (466)
Q Consensus       152 ~~~-~~~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~-l~~~  228 (466)
                      ... ...+..++ ++|..|.   ..|+++|||||.+|+|.|.+|++++++|||++|++.+..      .+.+.+. +...
T Consensus       122 E~ef~GrGVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~a------~~~~~e~~~~~~  192 (555)
T TIGR03143       122 EEEFTGRGVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC------AKLIAEKVKNHP  192 (555)
T ss_pred             HHHCCCCCEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCC------CHHHHHHHHHCC
T ss_conf             32216871377403763241---798699983888999999999974890899997875685------899999998579


Q ss_pred             CCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEE------EEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             222322002344201468721699972-133211000------0023204531210367840000126764223337763
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEA------DAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF  301 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~------D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~  301 (466)
                      +|++++++++.++..++....+.+.+. +++..++++      |-|++++|+.|||+   |.+.++++|++|+|+||++|
T Consensus       193 kI~v~~nt~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m  269 (555)
T TIGR03143       193 KIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDM  269 (555)
T ss_pred             CEEEEECCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCC
T ss_conf             859997888999986785489999998889789960465667628999979965415---66073258889719739997


Q ss_pred             EEECCCCEEECCCCCCC-CCCCEECCCCCCEEEC
Q ss_conf             33026848702433354-3443000123201201
Q gi|254781053|r  302 QTSISTIYAIGDVVRGP-MLAHKAEDEGIAVAEI  334 (466)
Q Consensus       302 ~Ts~p~IyA~GDv~g~~-~l~~~A~~~g~~aa~~  334 (466)
                      |||+|||||||||+..+ ...-+|..+|-+||-.
T Consensus       270 ~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~  303 (555)
T TIGR03143       270 ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATS  303 (555)
T ss_pred             CCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHH
T ss_conf             0599988988345289877354708757999999


No 37 
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00  E-value=7.3e-42  Score=323.24  Aligned_cols=291  Identities=24%  Similarity=0.279  Sum_probs=185.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC-CCCHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775-32899
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASC-HLDLK   81 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~-~~d~~   81 (466)
                      .+|+|||||||||+||.+|+++|++|+|||+.+. +|.|+++|| |++.+-.  +.+.+..+.....|+.+... .+.  
T Consensus        18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~-~GG~~~~gi-p~~~~p~--~~~~~~~~~l~~~g~~~~~~~~v~--   91 (350)
T PRK12770         18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPE-PGGLMVFGI-PEFRIPI--ERVREGVRELEELGVVFHTRTKVY--   91 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEEEEE-CCCCCCH--HHHHHHHHHHHHHCCEEECCEEEE--
T ss_conf             9899999558899999999978998599953696-982899834-7976668--899999999997097697320998--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCC--CCCCCCCCC
Q ss_conf             999999999998777778764004310110011100222102357521123221000046766-52444--576653210
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASGL--PGMSIDFDE  158 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~i--P~~~~~~~~  158 (466)
                                           ..  .......    ....+.......+...++|.+|||||+ +|+.+  |+.+.+   
T Consensus        92 ---------------------~~--~~~~~~~----~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~l~ipG~~~~---  141 (350)
T PRK12770         92 ---------------------CD--EPPHEEE----GDEFVEDFVSLEELVEEYDAVLIATGTWKSRKLGIPGENLP---  141 (350)
T ss_pred             ---------------------EE--CCEEEEE----CCEEEEEEEEHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC---
T ss_conf             ---------------------50--2011330----32035776018987741899999658997735898874567---


Q ss_pred             EEEEEECC-----------CCCCCC----CCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             02453057-----------411111----133321012344543320132201220-11100001112212222112222
Q gi|254781053|r  159 QVIVSSTG-----------ALSFSS----VPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCL  222 (466)
Q Consensus       159 ~~~~t~~~-----------~~~l~~----~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~  222 (466)
                       .+++..+           ......    .+|+++|||||++|+|+|..|+++|++ |+++.|++...    ........
T Consensus       142 -gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~~----~~~~~~~~  216 (350)
T PRK12770        142 -GVYSALEYLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTINE----APAGKYEI  216 (350)
T ss_pred             -CEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHC----CCCCHHHH
T ss_conf             -8086478787765343533553446655898899989864567999999975996899996665002----86189999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEE----------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEE
Q ss_conf             22222222232200234420146872169997----------------21332110000023204531210367840000
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRS----------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIG  286 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~----------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g  286 (466)
                      +.+.+.|++++.+..+.++...+....+.+.+                .+++..++++|.||+++|++||++.  ++++|
T Consensus       217 ~~l~~~gv~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~--~~~~g  294 (350)
T PRK12770        217 ERLIERGVEFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPF--KKELG  294 (350)
T ss_pred             HHHHHCCCEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCH--HHHCC
T ss_conf             9999769889974522999827967899999988605666774553121374103105789999777788413--54159


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             12676422333776333026848702433354344300012320120111
Q gi|254781053|r  287 INIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       287 i~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      +++|++|+|.||++||||+|||||+|||+++|+++|+|..||+.||.++.
T Consensus       295 v~ld~~G~I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~  344 (350)
T PRK12770        295 IELNRDGEIKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIH  344 (350)
T ss_pred             EEECCCCEEEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             12889981986989744899999801687888899999999999999999


No 38 
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=100.00  E-value=4.5e-40  Score=310.21  Aligned_cols=273  Identities=37%  Similarity=0.572  Sum_probs=195.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      ||+||||||||++||.+|+++|++|+|||++   ++.|.+++|+|++.+......                 ..+.+...
T Consensus         1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~---~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~   60 (277)
T pfam07992         1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKE---GGTCYNRGCIPKKLLLEAAEV-----------------GKLDLRPL   60 (277)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEECCCCCCCCCCCCCH-----------------HHHHHHHH
T ss_conf             9999997699999999998499979999379---993575577477116454331-----------------45618999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100-111002221023575211232210000467665244--457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHG-SARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g-~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~~  160 (466)
                                      ......+++++.+ ....++...-.|...++ ++++||++|||||++|+.  +||.+  ..+..
T Consensus        61 ----------------~~~~~~~i~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~ipG~~--~~~~~  121 (277)
T pfam07992        61 ----------------EQYKDEGIEVLLGTGVTAIDKAGKKVTLDDG-KELTYDKLVIATGARPRRPPIPGVE--LDGVF  121 (277)
T ss_pred             ----------------HHHHHCCCEEEECCEEEEEECCCCEEEECCC-CEEECCEEEECCCCCCCCCCCCCCC--CCCCE
T ss_conf             ----------------9998759799968779999789998998789-3998599999879986225778744--45623


Q ss_pred             EEEECCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             45305741111113-33210123445433201322012201110000111221222211222222222222232200234
Q gi|254781053|r  161 IVSSTGALSFSSVP-KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       161 ~~t~~~~~~l~~~P-~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      +++..+++.++..| ++++|||||++|+|+|..++++|++||++++++++++.++++......+.+...++..+....+.
T Consensus       122 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (277)
T pfam07992       122 YLTSDDALALREKPKKRVVVVGGGYIGLELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVE  201 (277)
T ss_pred             ECCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEE
T ss_conf             23699998756174566999799875999999999729937999865723444478999999999997398999966788


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCC
Q ss_conf             42014687216999721332110000023204531210367840000126764223337763330268487024333543
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPM  319 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~  319 (466)
                      ..........  .....++..++++|.+++++|..|+..  .++..|++++++|+|.||++||||+|||||+|||+++++
T Consensus       202 ~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~g~~~~~~--~~~~~gl~~~~~G~I~vd~~~~Ts~~~VyA~GDva~g~~  277 (277)
T pfam07992       202 VVVEVVEGVV--VKVVLEDGIEADADLVAIGRGPNPNTL--LLEKAGLELDERGYIVVDEYLRTSVPGIYAAGDVAEGRP  277 (277)
T ss_pred             EEEECCEEEE--EECCCCEEEEEEEEEEEEEEEECCCCC--HHHHCCCCCCCCCCEEECCCCEECCCCEEEEEECCCCCC
T ss_conf             9883003689--860565279970899999974158951--377779248899958679297409999999886889999


No 39 
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00  E-value=6.5e-39  Score=301.77  Aligned_cols=286  Identities=26%  Similarity=0.346  Sum_probs=197.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      |||+||||||||++||++++|.|++++||++.  +||.+.....|                .  ...|+    +.+.-.+
T Consensus       213 YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~--~GGqv~~t~~I----------------e--NypG~----~~i~G~e  268 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGI----------------E--NLISV----PYTTGSQ  268 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCCCEECCCE----------------E--ECCCC----CCCCHHH
T ss_conf             88899896789999999999779976999248--77531303460----------------0--44898----7775799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEEC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--CCCCC-CC
Q ss_conf             9999999999877777876400431011001-1100--22210235752112322100004676652444--57665-32
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIV--SNNKILVKGSSSEETIEAKNIVIATGSEASGL--PGMSI-DF  156 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~i--P~~~~-~~  156 (466)
                      +.+...           ...++.+++++.+. ...+  ......|..+++ ++++++.+|||||++|+.+  ||... ..
T Consensus       269 L~~~~~-----------~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g-~~~~aktVIiATGa~~r~l~vpGE~e~~G  336 (515)
T TIGR03140       269 LAANLE-----------EHIKQYPIDLMENQRAKKIETEDGLIVVTLESG-EVLKAKSVIVATGARWRKLGVPGEKEYIG  336 (515)
T ss_pred             HHHHHH-----------HHHHHCCCEEEECCEEEEEECCCCCEEEEECCC-CEEEECEEEECCCCCCCCCCCCCHHHCCC
T ss_conf             999999-----------999974968991336999972798189998799-89993979995698735589996787038


Q ss_pred             CCEEEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             100245-30574111111333210123445433201322012201110000111221222211222222222-2222322
Q gi|254781053|r  157 DEQVIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQL  234 (466)
Q Consensus       157 ~~~~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~  234 (466)
                      .+..++ ++|..| ++  .|+++|||||..|+|.|.+|+++.++|||++|++.+-.  |+    .+++.+++ .+|++++
T Consensus       337 kGVsYCa~CDG~~-fk--gK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~  407 (515)
T TIGR03140       337 KGVAYCPHCDGPF-FK--GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILT  407 (515)
T ss_pred             CCCCEECCCCCHH-CC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEE
T ss_conf             7401001078101-18--97699989977999999999841771699736523343--38----8999998389868997


Q ss_pred             CHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf             00234420146872-1699972-133211000002320453121036784000012676422333776333026848702
Q gi|254781053|r  235 NSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG  312 (466)
Q Consensus       235 ~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G  312 (466)
                      ++.++++..+++.+ .+.+++. +++..++++|.|++++|..||++.+  +.. ++++++|+|.||++||||+|||||||
T Consensus       408 ~~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~~-v~l~~~G~I~vD~~~~TnvpGVFAAG  484 (515)
T TIGR03140       408 SAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAAG  484 (515)
T ss_pred             CCEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HCH-HCCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf             988899987898589999998899977999868999984997662565--151-11079973982998707999879856


Q ss_pred             CCCCCCC-CCCEECCCCCCEEECCC
Q ss_conf             4333543-44300012320120111
Q gi|254781053|r  313 DVVRGPM-LAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       313 Dv~g~~~-l~~~A~~~g~~aa~~i~  336 (466)
                      ||++.|. ..-+|.-+|..||-..+
T Consensus       485 Dvt~~~~kQi~~A~G~Ga~AAlsA~  509 (515)
T TIGR03140       485 DVTTVPYKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             ECCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf             6738986678786664799999999


No 40 
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00  E-value=5.8e-37  Score=287.58  Aligned_cols=290  Identities=21%  Similarity=0.275  Sum_probs=193.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             33199998986689999999987993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      +|||+||||||||++||++|+++|+++++||+.+ .||.|.+...               +.+ .  .|.   ...+.-+
T Consensus         6 ~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~-~GG~l~~~~~---------------i~n-~--pg~---~~~i~G~   63 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTE---------------VEN-W--PGD---PNDLTGP   63 (321)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCC---------------EEE-C--CCC---CCCCCHH
T ss_conf             6009999976899999999998699679996059-6874200560---------------356-1--788---8764779


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCC
Q ss_conf             99999999999877777876400431011001110--0222102357521123221000046766524--4457665321
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI--VSNNKILVKGSSSEETIEAKNIVIATGSEAS--GLPGMSIDFD  157 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~--~~~~~v~V~~~~~~~~i~ad~iviATGs~p~--~iP~~~~~~~  157 (466)
                      .++++..+...+           .+++++...-.-  ...+.+.|.++.+  +++++.+|||||++|+  .+|+.+ .+.
T Consensus        64 ~l~~~~~~q~~~-----------~~~~i~~~~v~~i~~~~~~f~v~t~~g--~~~a~aViiAtG~~~r~l~ipge~-~~~  129 (321)
T PRK10262         64 LLMERMHEHATK-----------FETEIIFDHINKVDLQNRPFRLTGDSG--EYTCDALIIATGASARYLGLPSEE-AFK  129 (321)
T ss_pred             HHHHHHHHHHHH-----------HCCEEEECCCCEEEEECCCEEEECCCC--EEEEEEEEEEECCCCCCCCCCCHH-HHC
T ss_conf             999999999997-----------087489412315774036519975898--899989999646865537999714-306


Q ss_pred             CEE--E-EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             002--4-5305741111113332101234454332013220122011100001112212222112222222222222322
Q gi|254781053|r  158 EQV--I-VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQL  234 (466)
Q Consensus       158 ~~~--~-~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~  234 (466)
                      +..  + .+++. +.  ..+|+++|+|||..|+|.|.+|++++++||+++|++.+..  ++...+.+.+.+++.+|.+++
T Consensus       130 g~gv~~~~~cd~-~~--~~~k~VaViGgG~~A~d~A~~L~~~a~~V~lv~rr~~~~a--~~~~~~~~~~~~e~~~i~~~~  204 (321)
T PRK10262        130 GRGVSACATCDG-FF--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--EKILIKRLMDKVENGNIILHT  204 (321)
T ss_pred             CCCEEEEEEECC-HH--CCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CHHHHHHHHHHHHCCCEEEEC
T ss_conf             886689885053-00--1898799991888899999999976198999974465562--788999999776358558743


Q ss_pred             CHHHHHHHCCCCCC-EEEEEEECC--CCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCC-----CCEEECC
Q ss_conf             00234420146872-169997213--321100000232045312103678400001267642233377-----6333026
Q gi|254781053|r  235 NSKVSSVKKVKGKA-QVVYRSTDD--EPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG-----QFQTSIS  306 (466)
Q Consensus       235 ~~~v~~i~~~~~~~-~v~~~~~~g--~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~-----~~~Ts~p  306 (466)
                      +..+.+++..+.++ .+.+.+...  ..+++++|.+++++|+.||+..+  + ..+++ ++|+|.||+     ++|||+|
T Consensus       205 ~~~i~~i~g~~~~v~gv~l~~~~~~~~~~~~~~d~v~v~~G~~pn~~~~--~-~~l~l-~~g~i~vd~~~~~~~~~Tsip  280 (321)
T PRK10262        205 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLEL-ENGYIKVQSGIHGNATQTSIP  280 (321)
T ss_pred             CCEEEEEECCCCEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCHHHH--C-CCEEC-CCCEEEECCCCCCCCCCCCCC
T ss_conf             7078999778765899999937778667998602389995576784775--5-85402-399699688876787768989


Q ss_pred             CCEEECCCCCCC-CCCCEECCCCCCEEECCC
Q ss_conf             848702433354-344300012320120111
Q gi|254781053|r  307 TIYAIGDVVRGP-MLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       307 ~IyA~GDv~g~~-~l~~~A~~~g~~aa~~i~  336 (466)
                      ||||+|||+.++ .+...|.-+|..||..+.
T Consensus       281 GifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~  311 (321)
T PRK10262        281 GVFAAGDVMDHIYRQAITSAGTGCMAALDAE  311 (321)
T ss_pred             CEEEEEECCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf             9899994778988768780785899999999


No 41 
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=100.00  E-value=5e-37  Score=288.02  Aligned_cols=362  Identities=20%  Similarity=0.267  Sum_probs=243.1

Q ss_pred             EEEECCCHHHHHHHHHHHH----CCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE-CCCCCCC
Q ss_conf             9999898668999999998----7993999937997150251366737098999999999999866755816-4775328
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN-IASCHLD   79 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~-~~~~~~d   79 (466)
                      +||||-|.||.-+--...+    ..++++++=.++..     |+               .++       .++ +-+.+.|
T Consensus         1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~-----~Y---------------dRv-------~LSs~l~G~~~   53 (813)
T TIGR02374         1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEPHP-----AY---------------DRV-------LLSSVLQGEAD   53 (813)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC---------------CCE-------EECEEECCCCC
T ss_conf             9787047410347776751210177308998258895-----43---------------602-------21101046455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999877777876400431011001110--02221023575211232210000467665244457665321
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARI--VSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~--~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      .+.           +.-.-+.+.++++|.++.++-.+  -..++..++  +..++..||+||+||||.|+-+|....+. 
T Consensus        54 ~~~-----------l~L~~~D~y~~~~i~ly~ge~vi~id~~~k~v~t--~a~r~~~YD~LilATGS~pfilPipG~D~-  119 (813)
T TIGR02374        54 LED-----------LTLNSKDWYEKHGIKLYTGERVIQIDREEKSVIT--DAGRTLSYDKLILATGSYPFILPIPGADK-  119 (813)
T ss_pred             HHH-----------CCCCCCCCCCCCCEEEEECCEEEEEECCCCEEEC--CCCCCCCCCEEEEECCCCCCCCCCCCCCC-
T ss_conf             778-----------0668788312275489876888998357645870--47763357517873066573086688888-


Q ss_pred             CEEEEEECCCCCCC------CCCCCC------CCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-CCCCCCCCCCCCC
Q ss_conf             00245305741111------113332------1012344543320132201220111000011122-1222211222222
Q gi|254781053|r  158 EQVIVSSTGALSFS------SVPKNL------LVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-GMDKEIAAHCLKI  224 (466)
Q Consensus       158 ~~~~~t~~~~~~l~------~~P~~i------vIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-~~d~~~~~~~~~~  224 (466)
                       +.++-.+++-+++      +.-++-      +|||||..|+|-|..|..||.+|++|+.+|.||. .+|+...+.+++.
T Consensus       120 -~~v~~fRti~D~~A~~~~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~  198 (813)
T TIGR02374       120 -KGVYVFRTIEDLDAILAAAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRE  198 (813)
T ss_pred             -CCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -8615870567999999999863126766785588674158899999987797064467648989999999999999999


Q ss_pred             CCCCCCCCCC--CHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             2222222322--00234420146-87216999721332110000023204531210367840000126764223337763
Q gi|254781053|r  225 MSKQGMNFQL--NSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF  301 (466)
Q Consensus       225 l~~~gV~i~~--~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~  301 (466)
                      |++.||+||+  +.+-.++-+.+ ....-.++..||+  .+++|.|++|+|.+||++ | ..++||++++||.|+||++|
T Consensus       199 le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~--~l~aDlvv~A~GirP~~~-L-A~~aGl~v~~RrGiivnd~~  274 (813)
T TIGR02374       199 LEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS--SLEADLVVFAAGIRPRDE-L-AAEAGLKVNDRRGIIVNDSM  274 (813)
T ss_pred             HHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC--EEEECEEEEECCCCCCHH-H-HHHCCCCCCCCCCEEECCCC
T ss_conf             9857957986176110576415640123122423897--887037999515666368-9-98659735476767872622


Q ss_pred             EEECCCCEEECCCCCC----CCCCCEECCCCCCEEECCCCCC-CCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEE-
Q ss_conf             3302684870243335----4344300012320120111222-222233332210001445510014788862346658-
Q gi|254781053|r  302 QTSISTIYAIGDVVRG----PMLAHKAEDEGIAVAEIISGQK-GHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYK-  375 (466)
Q Consensus       302 ~Ts~p~IyA~GDv~g~----~~l~~~A~~~g~~aa~~i~~~~-~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~-  375 (466)
                      |||.|||||+|.|+..    +-|.-=-+.||.++|++|.|-+ .+| ....|++               ++|=.|+|+- 
T Consensus       275 qTs~P~IYAvGEcA~~~G~~YGLVAPlY~~A~v~a~h~lG~~~~~y-~gs~LSa---------------~LK~~GvdV~S  338 (813)
T TIGR02374       275 QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHILGVETEEY-EGSDLSA---------------KLKLLGVDVAS  338 (813)
T ss_pred             CCCCCCEEEEEEEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCC-CCCCHHH---------------HHHHCCEEEEE
T ss_conf             3788873356655510885897107614789999998648987767-6765456---------------54032224552


Q ss_pred             EEEEE-ECCCCHH-HHCCCC-CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             99996-0447034-418898-338999997899869999998299889999999999
Q gi|254781053|r  376 VGKFP-FSANGRA-RSMNSI-DGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLM  429 (466)
Q Consensus       376 v~~~~-~~~~~ra-~~~~~~-~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai  429 (466)
                      .+.+. -+..-++ ++.++. .-|-|+|+..+...|+|+-+||+ +++--+++.+..
T Consensus       339 ~Gd~~G~~e~~~~~~~~De~~~iYkk~vl~~d~~TL~GavL~GD-~s~~~~L~~~v~  394 (813)
T TIGR02374       339 AGDAQGETEEAKSIKIYDEQKGIYKKLVLSDDKKTLLGAVLVGD-TSDYGRLLDMVL  394 (813)
T ss_pred             ECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEE-CCCCCHHHHHHH
T ss_conf             06544789984068887266451567888448826887899863-055425888865


No 42 
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=2.7e-35  Score=275.43  Aligned_cols=285  Identities=26%  Similarity=0.371  Sum_probs=195.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             933199998986689999999987993-9999379971502513667370989999999999998667558164775328
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~-V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      |+|||+|||||||||+||+++++++++ ++|+|+. ..||.       |+++           .......|+.   ..+.
T Consensus         2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~-~~gg~-------~~~~-----------~~venypg~~---~~~~   59 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQ-------LTKT-----------TDVENYPGFP---GGIL   59 (305)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCC-------CCCC-----------EEECCCCCCC---CCCC
T ss_conf             42288998958899999999987589856999478-75886-------3443-----------3335767986---7775


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-CC-CCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCC
Q ss_conf             999999999999987777787640043101100111002-22-1023575211232210000467665244--4576653
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS-NN-KILVKGSSSEETIEAKNIVIATGSEASG--LPGMSID  155 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~-~~-~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~  155 (466)
                      .+.+++...+..           +..+++++.....-++ .. .+.|.+.++.  ++++++|||||+.++.  +|+.. +
T Consensus        60 g~~L~~~~~~~a-----------~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~--~~ak~vIiAtG~~~~~~~~~~e~-e  125 (305)
T COG0492          60 GPELMEQMKEQA-----------EKFGVEIVEDEVEKVELEGGPFKVKTDKGT--YEAKAVIIATGAGARKLGVPGEE-E  125 (305)
T ss_pred             HHHHHHHHHHHH-----------HHCCEEEEEEEEEEEEECCCEEEEEECCCE--EEEEEEEECCCCCCCCCCCCCCH-H
T ss_conf             089999999777-----------634708888998998606860999947974--98656999617765678898725-4


Q ss_pred             CCC--EEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             210--024-5305741111113332101234454332013220122011100001112212222112222222222-222
Q gi|254781053|r  156 FDE--QVI-VSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-GMN  231 (466)
Q Consensus       156 ~~~--~~~-~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-gV~  231 (466)
                      +.+  ..+ .+++. +.   ..++++|||||..++|.|.+|++.+++||++.|++.+-.  +    +.+++.|++. +|+
T Consensus       126 ~~g~gv~yc~~cdg-~~---~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~----~~~~~~l~~~~~i~  195 (305)
T COG0492         126 FEGKGVSYCATCDG-FF---KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--E----EILVERLKKNVKIE  195 (305)
T ss_pred             HCCCCEEEEEECCC-CC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCC--C----HHHHHHHHHCCCEE
T ss_conf             35887599773476-35---798499999987899999998853683999965866682--7----99999987358828


Q ss_pred             CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEE
Q ss_conf             32200234420146872169997213321100000232045312103678400001267642233377633302684870
Q gi|254781053|r  232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAI  311 (466)
Q Consensus       232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~  311 (466)
                      +++++.+.++...+ ...+.+++..++...+++|.+++++|..||++.  ++..++ ++++|+|+||+.+|||+|+||||
T Consensus       196 ~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAa  271 (305)
T COG0492         196 VLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAA  271 (305)
T ss_pred             EEECCEEEEECCCC-CCEEEEEECCCCEEEEEEEEEEEECCCCCCHHH--HHCCCC-CCCCCCEECCCCCEECCCCEEEC
T ss_conf             99787035871666-326999935783689872579996178883466--530244-36896487289827045888986


Q ss_pred             CCCCCCCC-CCCEECCCCCCEEECC
Q ss_conf             24333543-4430001232012011
Q gi|254781053|r  312 GDVVRGPM-LAHKAEDEGIAVAEII  335 (466)
Q Consensus       312 GDv~g~~~-l~~~A~~~g~~aa~~i  335 (466)
                      |||+..+. +.-.|..+|..|+..+
T Consensus       272 GDv~~~~~rqi~ta~~~G~~Aa~~a  296 (305)
T COG0492         272 GDVADKNGRQIATAAGDGAIAALSA  296 (305)
T ss_pred             HHHCCCCCCEEEEHHCCHHHHHHHH
T ss_conf             2331563212200215389999999


No 43 
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00  E-value=7e-35  Score=272.44  Aligned_cols=282  Identities=22%  Similarity=0.323  Sum_probs=200.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
Q ss_conf             31999989866899999999879--9399993799715025136673709899999999999986675581647753289
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL   80 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~   80 (466)
                      =-|||||||.||+.+|..+.+.-  .+++|||+....          +-+.+++.          ....-++......++
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h----------l~~plL~e----------va~g~l~~~~i~~p~   63 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH----------LFTPLLYE----------VATGTLSESEIAIPL   63 (405)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC----------CCCHHHHH----------HHCCCCCHHHEECCH
T ss_conf             5699989867999999976416788718999188766----------66303355----------632877756521308


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCC--CCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCC
Q ss_conf             999999999999877777876400-431011001110022--21023575211232210000467665244--4576653
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKK-NKIITYHGSARIVSN--NKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSID  155 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~a~~~~~--~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~  155 (466)
                                        ...+.. .+|.++.++..=+|.  ++|.+..   .+.+.||++|||+||.+..  +||... 
T Consensus        64 ------------------~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~---~~~i~YD~LVvalGs~~~~fgi~G~~E-  121 (405)
T COG1252          64 ------------------RALLRKSGNVQFVQGEVTDIDRDAKKVTLAD---LGEISYDYLVVALGSETNYFGIPGAAE-  121 (405)
T ss_pred             ------------------HHHHCCCCCEEEEEEEEEEECCCCCEEEECC---CCCCCCCEEEEECCCCCCCCCCCCHHH-
T ss_conf             ------------------9984235744899978999715679899578---870236389994587667689978787-


Q ss_pred             CCCEEEEEECCCCCCC-----------CCCC-----CCCCCCCCCCCCCCCHHHHHCC-------------CCHHHHHHC
Q ss_conf             2100245305741111-----------1133-----3210123445433201322012-------------201110000
Q gi|254781053|r  156 FDEQVIVSSTGALSFS-----------SVPK-----NLLVIGAGVIGLELGSVWTRLG-------------SCVKIIEHS  206 (466)
Q Consensus       156 ~~~~~~~t~~~~~~l~-----------~~P~-----~ivIIGgG~ig~E~A~~~~~lG-------------~~Vtli~~~  206 (466)
                       ....+.+.+|+..++           ..++     +++|+|||++|+|+|..++.+-             .+|+|++++
T Consensus       122 -~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~  200 (405)
T COG1252         122 -YAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG  200 (405)
T ss_pred             -HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             -0777788999999999999999986335643441189998988238999999999999876533478653189998257


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEE-E
Q ss_conf             111221222211222222222222232200234420146872169997213321100000232045312103678400-0
Q gi|254781053|r  207 GTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEE-I  285 (466)
Q Consensus       207 ~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~  285 (466)
                      |++||.|++++++.+++.|++.||++++++.|++++++.    +++.+++  . +|++|.++|++|.+|+.-   +++ .
T Consensus       201 p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~--~-~I~~~tvvWaaGv~a~~~---~~~l~  270 (405)
T COG1252         201 PRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGE--E-EIPADTVVWAAGVRASPL---LKDLS  270 (405)
T ss_pred             CHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEECCCC--E-EEECCEEEECCCCCCCHH---HHHCC
T ss_conf             121358888999999999998797898698148976991----7975588--3-776277998577757866---66327


Q ss_pred             ECCCCCCCCCCCCCCCEE-ECCCCEEECCCCC------CCCCCCEECCCCCCEEECCCC
Q ss_conf             012676422333776333-0268487024333------543443000123201201112
Q gi|254781053|r  286 GINIDHRGCIEIGGQFQT-SISTIYAIGDVVR------GPMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       286 gi~~~~~G~I~vd~~~~T-s~p~IyA~GDv~g------~~~l~~~A~~~g~~aa~~i~~  337 (466)
                      |++.|++|++.||+++|+ +.|+|||+|||+.      .|+.+..|.+||..+++||..
T Consensus       271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~  329 (405)
T COG1252         271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA  329 (405)
T ss_pred             HHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             02213489777578751699898699711103768887998118899999999999999


No 44 
>PRK11749 putative oxidoreductase; Provisional
Probab=100.00  E-value=1.3e-33  Score=263.14  Aligned_cols=276  Identities=27%  Similarity=0.389  Sum_probs=188.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|+|||||||||+||.+|+++|++|+++|+.+..||. +.+| ||..-                          +. +.+
T Consensus       142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl-l~~G-IP~~r--------------------------lp-k~v  192 (460)
T PRK11749        142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL-LRYG-IPEFR--------------------------LP-KDI  192 (460)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CCCCC--------------------------CC-HHH
T ss_conf             8999896789999999999769847997047878755-7545-89975--------------------------54-479


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCC--CCCCCCCCCCEE
Q ss_conf             9999999998777778764004310110011100222102357521123221000046766-5244--457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASG--LPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~--iP~~~~~~~~~~  160 (466)
                             +++..    ..++..||++..+.. + + +.+.++.    -.-+||.++||||+ +|+.  +||.+.    ..
T Consensus       193 -------~~~ei----~~i~~~GV~~~~n~~-v-G-~ditl~~----L~~~ydAV~lAtGa~~~r~l~ipGe~~----~G  250 (460)
T PRK11749        193 -------VDREV----ERLLKLGVEIRTNTA-V-G-RDITLDE----LRAEYDAVFIGTGLGLPRFLGIPGENL----GG  250 (460)
T ss_pred             -------HHHHH----HHHHHCCCEEECCEE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC
T ss_conf             -------99999----999853978985558-5-6-6432887----741148899944789886479998668----88


Q ss_pred             EEEECCCCC------------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             453057411------------111133321012344543320132201220-1110000111-22122221122222222
Q gi|254781053|r  161 IVSSTGALS------------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTI-LNGMDKEIAAHCLKIMS  226 (466)
Q Consensus       161 ~~t~~~~~~------------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~l-l~~~d~~~~~~~~~~l~  226 (466)
                      +++.-+++.            ....+|+++|||||.+|+++|..+.++|.+ ||+++|+++- +|....++     +..+
T Consensus       251 V~~a~dfL~~~~~~~~~~~~~~~~~Gk~VvVIGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei-----~~A~  325 (460)
T PRK11749        251 VYSAVDFLTRVNQDAVADDDTLIAVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEV-----EHAK  325 (460)
T ss_pred             EEEHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHH-----HHHH
T ss_conf             78989999997436544457755448748998984669998999998289846330007520099899999-----9887


Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCE-EEEE---------------EECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCC
Q ss_conf             22222322002344201468721-6999---------------7213321100000232045312103678400001267
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQ-VVYR---------------STDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINID  290 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~  290 (466)
                      ++||+++++..+.++...++++. +.+.               ..+++..++++|.|++|+|+.|+.+.+ .+..+++++
T Consensus       326 ~eGv~~~~~~~p~ei~~~~~~v~gv~~~~~~l~~~d~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~g~~~~  404 (460)
T PRK11749        326 EEGVEFVWLAAPVAILGDEGRVTGVKFERMELGEPDAGRRRPVPIEGSEFTLEADMVIKAIGQTPNPLIL-ATTPGLAVT  404 (460)
T ss_pred             HCCEEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCCEEC
T ss_conf             4570888266878999659957999999988615777873524079957999899999998789884100-346681276


Q ss_pred             CCCCCCCC-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             64223337-76333026848702433354344300012320120111
Q gi|254781053|r  291 HRGCIEIG-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       291 ~~G~I~vd-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ++|.+.+| +++|||+|+|||+|||..++.++..|+.+|+.||..|.
T Consensus       405 ~~g~i~~~d~~~~Ts~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~  451 (460)
T PRK11749        405 RWGTIIADDETGRTSLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIH  451 (460)
T ss_pred             CCCCEEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             89998846899722899999945877670599999999999999999


No 45 
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00  E-value=6.3e-34  Score=265.47  Aligned_cols=278  Identities=21%  Similarity=0.303  Sum_probs=192.4

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             99998986689999999987---993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      |||||||.||+++|.++++.   +.+|+|||+++.+    ....+.|.        .   +   .+.  ++..+..++  
T Consensus         2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~----~y~~~lp~--------~---~---~g~--~~~~~i~~~--   59 (364)
T TIGR03169         2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PYSGMLPG--------M---I---AGH--YSLDEIRID--   59 (364)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC----EECCHHHH--------H---H---HCC--CCHHHEECC--
T ss_conf             999996099999999970417899839999998865----16251699--------9---7---404--779992216--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCE
Q ss_conf             9999999999987777787640043101100111002221023575211232210000467665244--45766532100
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFDEQ  159 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~~~  159 (466)
                                      +..++...+++++.++..=+|+..=.|..+++ +++.||++||||||++..  +|+..     +
T Consensus        60 ----------------~~~~~~~~gv~~i~~~V~~ID~~~k~V~~~~g-~~l~YD~LViAtGs~~~~~~i~G~~-----e  117 (364)
T TIGR03169        60 ----------------LRRLARQAGARFVIAEATGIDPDRRKVLLANR-PPLSYDVLSLDVGSTTPLSGVEGAA-----D  117 (364)
T ss_pred             ----------------HHHHHHHCCCEEEEEEEEEEECCCCEEEECCC-CEEECCEEEEECCCCCCCCCCCCCC-----C
T ss_conf             ----------------89999777949996378999768898998899-8873688999436777889999720-----2


Q ss_pred             EEEEE---CCCCC----------CCCCCCCCCCCCCCCCCCCCCHHHHH----CCCCH-HHHHHCCCCCCCCCCCCCCCC
Q ss_conf             24530---57411----------11113332101234454332013220----12201-110000111221222211222
Q gi|254781053|r  160 VIVSS---TGALS----------FSSVPKNLLVIGAGVIGLELGSVWTR----LGSCV-KIIEHSGTILNGMDKEIAAHC  221 (466)
Q Consensus       160 ~~~t~---~~~~~----------l~~~P~~ivIIGgG~ig~E~A~~~~~----lG~~V-tli~~~~~ll~~~d~~~~~~~  221 (466)
                      ..+..   +++..          ....+.+++|+|+|++|+|+|..++.    .|.+. .++...+++|+.+++.+++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~~~~~~~~~~~  197 (364)
T TIGR03169       118 LAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLV  197 (364)
T ss_pred             CCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHHH
T ss_conf             64224779999999999998764057996458978581799999999999874687427998357751012599999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             22222222223220023442014687216999721332110000023204531210367840000126764223337763
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF  301 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~  301 (466)
                      ++.|++.||++++++.+++++...    +.+  .++  .++++|.++|++|.+||.-   +.+.++++|++|+|.||++|
T Consensus       198 ~~~l~~~gI~v~~~~~v~~v~~~~----v~l--~~g--~~i~~d~vi~~~G~~p~~~---~~~~~l~~d~~G~I~Vd~~l  266 (364)
T TIGR03169       198 LRLLARRGIEVHEGAPVTRGPDGA----LIL--ADG--RTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTL  266 (364)
T ss_pred             HHHHHHCCCEEEECCEEEEECCCC----EEE--CCC--CEEEEEEEEECCCCCCCHH---HHHCCCCCCCCCCEEECCCC
T ss_conf             999997795698375368977995----183--799--7896308998888778865---77446630789978878873


Q ss_pred             EE-ECCCCEEECCCCCC-----CCCCCEECCCCCCEEECCCC
Q ss_conf             33-02684870243335-----43443000123201201112
Q gi|254781053|r  302 QT-SISTIYAIGDVVRG-----PMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       302 ~T-s~p~IyA~GDv~g~-----~~l~~~A~~~g~~aa~~i~~  337 (466)
                      |+ +.|||||+|||+..     |..+..|.+||.++|+||..
T Consensus       267 q~~~~~~VfAiGD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~  308 (364)
T TIGR03169       267 QSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             EECCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             768999999971543688999997438899999999999999


No 46 
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=99.98  E-value=6.2e-33  Score=258.26  Aligned_cols=279  Identities=28%  Similarity=0.410  Sum_probs=201.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      +=|.|||+|||||++|..+|+.|++|+++|.-+-.||. +.                         |||  .+.++| +.
T Consensus       143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~-------------------------YGI--PefRLp-Ke  193 (462)
T TIGR01316       143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LA-------------------------YGI--PEFRLP-KE  193 (462)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE-------------------------ECC--CCCCCC-HH
T ss_conf             77999846821468899997479869999714899856-75-------------------------368--885487-57


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCC--CCCCCCCCCCCE
Q ss_conf             99999999998777778764004310110011100222102357521123221000046766-524--445766532100
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EAS--GLPGMSIDFDEQ  159 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~--~iP~~~~~~~~~  159 (466)
                      ++++   .+        ..|++.||++..++  ++ .++++.+  .=-+.|-+|.+-|+||+ +|+  +|||..+    .
T Consensus       194 i~~~---E~--------k~LkklGv~fr~~~--lv-Gkt~TL~--eL~~~YGfDAVFIgtGAG~pkl~NipG~~L----~  253 (462)
T TIGR01316       194 IVET---EV--------KKLKKLGVKFRTDY--LV-GKTVTLE--ELLEKYGFDAVFIGTGAGLPKLLNIPGEEL----K  253 (462)
T ss_pred             HHHH---HH--------HHHHHCCEEEEECC--EE-CCCHHHH--HHHHHCCCCEEEEEECCCCCEECCCCCHHH----C
T ss_conf             8898---88--------87632663799443--75-0511288--888751970799950689870016784343----4


Q ss_pred             EEEEECCCCC---------C--CCCC----CCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             2453057411---------1--1113----3321012344543320132201220-111000011122122221122222
Q gi|254781053|r  160 VIVSSTGALS---------F--SSVP----KNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAAHCLK  223 (466)
Q Consensus       160 ~~~t~~~~~~---------l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~~~~~  223 (466)
                      .+++..|++.         +  .+.|    ||++|||||++|+..|-.-.|||.+ ||+++|+.|=    |-...+.=.+
T Consensus       254 gvysA~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtRe----dmtAr~EEi~  329 (462)
T TIGR01316       254 GVYSANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTRE----DMTAREEEIK  329 (462)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCC----CCHHHHHHHH
T ss_conf             002234688777776542366788756544768998785367877766645284236998854777----5136699999


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE--C----------------CCCCCCEEEEEEECCCCEEEECCCCCEEE
Q ss_conf             22222222322002344201468721699972--1----------------33211000002320453121036784000
Q gi|254781053|r  224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST--D----------------DEPINIEADAVLVAAGRRPYTKGLGLEEI  285 (466)
Q Consensus       224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~--~----------------g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~  285 (466)
                      +++++||+||+=++++++-.++.+....++..  +                ++...++||.||+|+|..||-  |-.+..
T Consensus       330 ha~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Np--i~~e~~  407 (462)
T TIGR01316       330 HAEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANP--IIAEDS  407 (462)
T ss_pred             HHHHCCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCC--EEEECC
T ss_conf             885389289987421689865765189999885376881145781243049951788626599974589883--033067


Q ss_pred             -ECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             -012676422333776333026848702433354344300012320120111
Q gi|254781053|r  286 -GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       286 -gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                       +|+++++|.|.|||.++||.|||||-||++.+-...=.|+-||+-||..|.
T Consensus       408 r~lkt~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~  459 (462)
T TIGR01316       408 RSLKTSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID  459 (462)
T ss_pred             CEEEECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf             3333458865787476304767574267277458669985003568999874


No 47 
>PRK12831 putative oxidoreductase; Provisional
Probab=99.98  E-value=1.7e-32  Score=255.11  Aligned_cols=278  Identities=24%  Similarity=0.339  Sum_probs=186.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
                      |.|||+|||||+||.+|+++|++|+++|+.+..||... +| ||.                          .+++-..++
T Consensus       143 VAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~-yG-IP~--------------------------~RLpk~~vl  194 (464)
T PRK12831        143 VAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLV-YG-IPE--------------------------FRLPKETVV  194 (464)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE-EC-CCC--------------------------CCCCHHHHH
T ss_conf             99989768999999999976991799827888898044-51-688--------------------------876678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC--CCCCCCCCCEEE
Q ss_conf             9999999987777787640043101100111002221023575211232210000467665-2444--576653210024
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGL--PGMSIDFDEQVI  161 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~i--P~~~~~~~~~~~  161 (466)
                      ++       ..    ..++..||++..+.. + + +.+.+.  +-.+.-.||.++||||+. |+.+  ||.+.    ..+
T Consensus       195 ~~-------ei----~~l~~~GV~~~~n~~-v-G-~dis~~--~L~~~~~yDAV~la~Ga~~~r~l~ipG~~~----~gV  254 (464)
T PRK12831        195 KK-------EI----ENIKKLGVKIETNVI-V-G-RTVTID--ELLEEEGFDAVFIGSGAGLPKFMGIPGENL----NGV  254 (464)
T ss_pred             HH-------HH----HHHHHCCCEEEECCC-C-C-CCCCHH--HHHHCCCCCEEEEECCCCCCCCCCCCCCCC----CCE
T ss_conf             99-------99----999852938991574-2-7-876799--996356998899944888764378887668----886


Q ss_pred             EEECCCCCC--------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             530574111--------------11133321012344543320132201220111000011-122122221122222222
Q gi|254781053|r  162 VSSTGALSF--------------SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDKEIAAHCLKIMS  226 (466)
Q Consensus       162 ~t~~~~~~l--------------~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~~~~~~~~~~l~  226 (466)
                      ++..+++..              -...|+++|||||.+|+.+|....|+|++|++++|+++ -+|....+    + +...
T Consensus       255 ~~a~~fL~~~n~~~~~~~~~~~~~~~Gk~VvVIGGGntA~D~arta~R~GaeV~ivyrr~~~~mpa~~~E----~-~~a~  329 (464)
T PRK12831        255 FSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----V-HHAK  329 (464)
T ss_pred             EEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH----H-HHHH
T ss_conf             8979999998730012665667422587789988855689999988742977999704572138987012----3-3787


Q ss_pred             CCCCCCCCCHHHHHHHCCCCC-CE-EE---EEE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECC
Q ss_conf             222223220023442014687-21-69---997-------------2133211000002320453121036784000012
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGK-AQ-VV---YRS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN  288 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~-~~-v~---~~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~  288 (466)
                      ++||++++.+.+.++..++++ +. +.   ...             .++++.++++|.|++|+|+.|+...+ .+..|++
T Consensus       330 eeGv~~~~~~~p~~i~~~e~G~v~gv~~~~~~l~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~~~~~~~-~~~~gi~  408 (464)
T PRK12831        330 EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVMEVDTVIMSLGTSPNPLIS-STTPGLE  408 (464)
T ss_pred             HCCCEEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEE
T ss_conf             489789965685588754888388789999884355788877137649937999899999998689874300-1366802


Q ss_pred             CCCCCCCCCC-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             6764223337-76333026848702433354344300012320120111
Q gi|254781053|r  289 IDHRGCIEIG-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       289 ~~~~G~I~vd-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ++++|+|.+| +.++||.|+|||+|||..++.+...|+.+|+.||+.|.
T Consensus       409 ~~~~g~i~~~~~~~~Ts~~gVFa~GD~~~G~~~vV~Ai~~Gr~AA~~I~  457 (464)
T PRK12831        409 INKRGCIVADEETGLTSIEGVYAGGDAVTGAATVILAMGAGKKAAKAID  457 (464)
T ss_pred             ECCCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             7799988847899842899999827867683399999999999999999


No 48 
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.98  E-value=7.4e-33  Score=257.69  Aligned_cols=278  Identities=22%  Similarity=0.318  Sum_probs=191.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  .+=.||.                          .+++ +.+
T Consensus       552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm--L~yGIP~--------------------------fRLP-k~v  602 (1032)
T PRK09853        552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGV--VKNIIPE--------------------------FRIP-AEL  602 (1032)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH
T ss_conf             7999896889999999999779936998158978842--6735887--------------------------6789-999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24445766532100245
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVIV  162 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~~  162 (466)
                             +++..    ..++..||++..+.++     .+.++.   -+.=.||.++||||+. |+.++.   +++...++
T Consensus       603 -------IdreI----~~l~~~GV~f~tnvg~-----ditle~---L~~eGyDAVfLa~GA~~~r~L~I---pGe~~gV~  660 (1032)
T PRK09853        603 -------IQHDI----DFVAAHGVKFEYGCSP-----DLTVEQ---LKNQGYHYVLLAIGADKNGGLKL---AGDNQNVW  660 (1032)
T ss_pred             -------HHHHH----HHHHHCCCEEEECCCC-----CCCHHH---HHHCCCCEEEEECCCCCCCCCCC---CCCCCCEE
T ss_conf             -------99999----9999779699969999-----888999---96579999999458898887999---98657807


Q ss_pred             EECCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHC-CC-CHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3057411-------111133321012344543320132201-22-0111000011-122122221122222222222223
Q gi|254781053|r  163 SSTGALS-------FSSVPKNLLVIGAGVIGLELGSVWTRL-GS-CVKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       163 t~~~~~~-------l~~~P~~ivIIGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i  232 (466)
                      ..-+++.       -..+.|+++|||||.+|+.+|-.-.|+ |+ +||+++|+.+ -+|....++    . ..+++||++
T Consensus       661 ~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtivYRRt~~eMPA~~eEi----e-~A~eEGVef  735 (1032)
T PRK09853        661 KSLPFLREYNKGTADLKLGKHVVVVGAGNTAMDCARAALRVPGVEKVTVVYRRTLKEMPAWREEY----E-EALHDGVEF  735 (1032)
T ss_pred             EHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHH----H-HHHHCCEEE
T ss_conf             77999998743898766899389989847999999998750688658996058632089998999----9-887547499


Q ss_pred             CCCHHHHHHHCCCCCCEEEEEEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             22002344201468721699972------------133211000002320453121036784000012676422333776
Q gi|254781053|r  233 QLNSKVSSVKKVKGKAQVVYRST------------DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ  300 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~~~v~~~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~  300 (466)
                      ++.+.+.+++.++.......+.+            .|+..++++|.||.|+|..|+...  ++..||++|++|.|.||+.
T Consensus       736 ~~L~aP~~i~~dG~l~~~~M~LGEpDasGRrrPV~~Ge~~~i~aDtVI~AIGq~~d~~~--le~~GIeld~~G~I~vDe~  813 (1032)
T PRK09853        736 KFLLNPESFDADGTLTCRVMSLGEPDASGRRRPVETGETVTLHADTLITAIGEQVDTEL--LNAMGIPLDKNGWPDVNHN  813 (1032)
T ss_pred             EEECCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEEECCC
T ss_conf             98018869943785899999976858888876506996489988999998878998651--0256811889998877989


Q ss_pred             CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCCC
Q ss_conf             333026848702433354344300012320120111222
Q gi|254781053|r  301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQK  339 (466)
Q Consensus       301 ~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~  339 (466)
                      +|||.|||||+|||..+|.+.-.|+.+|+.||+.|.++.
T Consensus       814 ~~TS~pGVFAaGD~v~GpSTVV~AIadGRkAA~aIl~~~  852 (1032)
T PRK09853        814 GETNLTNVFMIGDVQRGPSSIVAAIADARRATDAILSRE  852 (1032)
T ss_pred             CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987899977730767677899999999999999998532


No 49 
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97  E-value=6.8e-32  Score=250.67  Aligned_cols=276  Identities=25%  Similarity=0.336  Sum_probs=188.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  ..-.||.                          .+++-   
T Consensus       329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGl--L~yGIP~--------------------------fRLpk---  377 (654)
T PRK12769        329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGL--LTFGIPA--------------------------FKLDK---  377 (654)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE--EEECCCC--------------------------CCCCH---
T ss_conf             8999897789999999999769757995257778866--7524862--------------------------22778---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
                           +++++..    ..++..||++..+.. + + +.+.+..    -.=+||.++||||+. |+  .+||.+.    ..
T Consensus       378 -----~vv~~ei----~~l~~lGV~f~~n~~-V-G-kDitl~e----L~~~yDAVfla~Ga~~~r~l~IpGedl----~G  437 (654)
T PRK12769        378 -----SLLARRR----EIFSAMGIHFELNCE-V-G-KDISLES----LLEDYDAVFVGVGTYRSMKAGLPNEDA----PG  437 (654)
T ss_pred             -----HHHHHHH----HHHHHCCCEEECCCE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC
T ss_conf             -----9999999----999826988983717-6-8-7658999----973699899951788786699899778----88


Q ss_pred             EEEECCCC--------CCC---C------CCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCC
Q ss_conf             45305741--------111---1------13332101234454332013220122-01110000111-221222211222
Q gi|254781053|r  161 IVSSTGAL--------SFS---S------VPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHC  221 (466)
Q Consensus       161 ~~t~~~~~--------~l~---~------~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~  221 (466)
                      +++.-+++        .+.   +      ..|+++|||||.+|+..|-...|+|. +||+++|+++- +|....++    
T Consensus       438 V~~AleFL~~~~~~~~g~~~~~~~~~i~~~GK~VvVIGGGntAmDcaRtA~RlGA~~Vt~vYRR~~~eMPA~~~Ev----  513 (654)
T PRK12769        438 VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV----  513 (654)
T ss_pred             CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH----
T ss_conf             3878888999888651775556667655557558998887246999999997599836604546723499875665----


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEE---EE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf             22222222223220023442014687-21-699---97-------------21332110000023204531210367840
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVY---RS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE  283 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~---~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le  283 (466)
                       +..+++||++++...+.++..++++ +. +.+   +.             .+|++..+++|.||+|+|+.|+-.. .++
T Consensus       514 -~~A~EEGV~f~~~~~P~ei~~de~G~V~gv~~~r~~lgepD~sGRr~p~~v~gse~~i~aD~VI~AiG~~p~~~~-~~~  591 (654)
T PRK12769        514 -KNAREEGANFEFNVQPVALVLDEQGHVCGIRFLRTRLGEPDAQGRRRPVPIEGSEFVMPADAVIMAFGFNPHGMP-WLE  591 (654)
T ss_pred             -HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCC-CCC
T ss_conf             -578856878994468579997799729999999988556277787620564896699989999999889998875-322


Q ss_pred             EEECCCCCCCCCCCCCC----CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             00012676422333776----333026848702433354344300012320120111
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQ----FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~----~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ..|++++++|.|.+|..    +|||+|+|||+||+..++.+.-.|+.+|+.||+.|.
T Consensus       592 ~~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId  648 (654)
T PRK12769        592 SHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII  648 (654)
T ss_pred             CCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             568137699988736777765448999989807856682899999999999999999


No 50 
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97  E-value=2e-32  Score=254.53  Aligned_cols=275  Identities=23%  Similarity=0.333  Sum_probs=188.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  .+=.||.                          .+++ +.+
T Consensus       539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm--L~yGIP~--------------------------fRLP-kev  589 (1012)
T TIGR03315       539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV--VKNIIPE--------------------------FRIS-AES  589 (1012)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH
T ss_conf             8999897789999999999779956998158978854--7855887--------------------------7789-999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24445766532100245
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVIV  162 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~~  162 (466)
                             +++..    ..++..||++..+.+     ..+.++.   -+.=.||.++||+|+. |+.++..   .+...++
T Consensus       590 -------I~reI----~~i~~~GV~f~tnvg-----~ditlee---L~~egYDAVfLa~GA~~~r~L~Ip---Gd~~gV~  647 (1012)
T TIGR03315       590 -------IQKDI----ELVKFHGVEFKYGCS-----PDLTVAE---LKNQGYKYVILAIGAWKHGPLRLE---GGGERVL  647 (1012)
T ss_pred             -------HHHHH----HHHHHCCEEEEECCC-----CCCCHHH---HHHCCCCEEEEECCCCCCCCCCCC---CCCCCCE
T ss_conf             -------99999----999968969997998-----8888999---965899999995689988779999---7656858


Q ss_pred             EECCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHC-CC-CHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3057411-------111133321012344543320132201-22-0111000011-122122221122222222222223
Q gi|254781053|r  163 SSTGALS-------FSSVPKNLLVIGAGVIGLELGSVWTRL-GS-CVKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       163 t~~~~~~-------l~~~P~~ivIIGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i  232 (466)
                      ..-+++.       ...+.|+++|||||.+|+.+|-.-.|+ |+ +||+++|+.+ -+|....++    . ...+.||++
T Consensus       648 ~AleFL~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtvvYRRt~~eMPA~~eEi----e-~A~EEGVef  722 (1012)
T TIGR03315       648 KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----E-EALEDGVDF  722 (1012)
T ss_pred             EHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHHH----H-HHHHCCEEE
T ss_conf             67999997211799656899589989847999999998750788757998258621089998999----8-777538179


Q ss_pred             CCCHHHHHHHCCCCCCEE-EEEEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCC
Q ss_conf             220023442014687216-99972------------13321100000232045312103678400001267642233377
Q gi|254781053|r  233 QLNSKVSSVKKVKGKAQV-VYRST------------DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGG  299 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~~~v-~~~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~  299 (466)
                      ++...+.+++  ++...+ ..+.+            .++..++++|.||+|+|..|+++.  +++.|+++|++|.|.||+
T Consensus       723 ~~L~aP~~ie--dG~l~~~~m~LgepD~sGRrrPv~~ge~~~i~aDtVI~AIGQ~~d~~~--l~~~GIeld~rG~I~vD~  798 (1012)
T TIGR03315       723 KELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQ  798 (1012)
T ss_pred             EEEECCEEEE--CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCH--HHCCCCEECCCCCEEECC
T ss_conf             9954885898--887999999976727888887517996489988999998788998540--212484088998988688


Q ss_pred             -CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC
Q ss_conf             -633302684870243335434430001232012011122
Q gi|254781053|r  300 -QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ  338 (466)
Q Consensus       300 -~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~  338 (466)
                       .+|||+|||||+|||..+|.+.-.|+.+|+.||+.|+++
T Consensus       799 ~t~~TS~pGVFAaGD~v~GpstVV~AIadGR~AA~aIl~~  838 (1012)
T TIGR03315       799 ATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR  838 (1012)
T ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8787899998880066757789999999999999999864


No 51 
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97  E-value=4.8e-32  Score=251.77  Aligned_cols=273  Identities=24%  Similarity=0.358  Sum_probs=190.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
                      |.|||||||||+||.+|+++|++|+++|+.+..||-  .+=-||.                          .++. +.+ 
T Consensus       196 VAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm--lryGIP~--------------------------yRLP-k~v-  245 (652)
T PRK12814        196 VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM--MRYGIPR--------------------------FRLP-ESV-  245 (652)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC-HHH-
T ss_conf             999683789999999999779906998158888986--7644863--------------------------3389-999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCCCCEEE
Q ss_conf             9999999987777787640043101100111002221023575211232210000467665-244--4576653210024
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASG--LPGMSIDFDEQVI  161 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~--iP~~~~~~~~~~~  161 (466)
                            +++.   ++ .+.+.||++..+.. +-.+  +.+.    +-.=.||.++||+|+. ++.  +||.+.    ..+
T Consensus       246 ------ld~E---I~-~i~~~GV~~~~n~~-vG~d--itl~----~L~~~yDAVflaiGa~~~r~L~ipGedl----~gV  304 (652)
T PRK12814        246 ------IDAD---IA-PLRAMGAEFRFNTV-FGRD--ITLE----ELQKEFDAVLLAVGAQKASKMGIPGEEL----PGV  304 (652)
T ss_pred             ------HHHH---HH-HHHHCCCEEEEEEE-ECCC--CCHH----HHHHHCCEEEEEECCCCCCCCCCCCCCC----CCE
T ss_conf             ------9999---99-99971985886679-4774--7799----9986589999975578774479888878----772


Q ss_pred             EEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             53057411------111133321012344543320132201220-111000011-1221222211222222222222232
Q gi|254781053|r  162 VSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHCLKIMSKQGMNFQ  233 (466)
Q Consensus       162 ~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~gV~i~  233 (466)
                      +..-+++.      ...+.|+++|||||.+|+..|-...|+|.+ ||+++|+.+ -||..+.++    .. .+++||+++
T Consensus       305 ~~avdfL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei----~e-A~eEGV~~~  379 (652)
T PRK12814        305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EE-ALAEGVSLR  379 (652)
T ss_pred             EEHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHH----HH-HHHCCCCEE
T ss_conf             7689999985269866678852486688138999999987489758998337633199986777----78-886798469


Q ss_pred             CCHHHHHHHCCCCCCEEEEE-E---------------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCC
Q ss_conf             20023442014687216999-7---------------2133211000002320453121036784000012676422333
Q gi|254781053|r  234 LNSKVSSVKKVKGKAQVVYR-S---------------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI  297 (466)
Q Consensus       234 ~~~~v~~i~~~~~~~~v~~~-~---------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~v  297 (466)
                      +.+.+.++...+++..+... .               .++++.++++|.||+|+|+.++.+  .++..|++++++|.|.+
T Consensus       380 ~l~~P~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~--~~~~~gl~~~~~G~i~v  457 (652)
T PRK12814        380 ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP--IAEAAGIGTSRNGTVKV  457 (652)
T ss_pred             ECCCCEEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCC--HHHCCCCCCCCCCCEEE
T ss_conf             7615589998689689999999996887889772456599669961788998458788833--22245863668998885


Q ss_pred             C-CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             7-7633302684870243335434430001232012011
Q gi|254781053|r  298 G-GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       298 d-~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      | +.++||.|+|||+||+..+|.++-.|+.+|+.||.+|
T Consensus       458 d~~t~~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~I  496 (652)
T PRK12814        458 DPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI  496 (652)
T ss_pred             CCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             888874399999989888768449999999999999999


No 52 
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97  E-value=2.8e-32  Score=253.48  Aligned_cols=279  Identities=25%  Similarity=0.351  Sum_probs=185.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||||||||+||.+|+++|++|+++|+.+..||.  ..-+||+.                          +++ +.+
T Consensus       145 kVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGl--l~yGIP~~--------------------------RLp-k~v  195 (472)
T PRK12810        145 KVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGL--LRYGIPDF--------------------------KLE-KDV  195 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCCC--------------------------CCC-HHH
T ss_conf             8999897789999999998669758997257777754--65317885--------------------------553-589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCC--CCCCCCCCCCEE
Q ss_conf             9999999998777778764004310110011100222102357521123221000046766-5244--457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS-EASG--LPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs-~p~~--iP~~~~~~~~~~  160 (466)
                      ++       +..    ..++..||++..+.. + + +.+.+.    +-.-+||.++||||+ +|+.  +||.+  ..  .
T Consensus       196 ~~-------~ei----~~l~~~GV~~~~n~~-V-G-~dit~~----~L~~~yDAV~la~Ga~~~r~l~ipG~~--~~--G  253 (472)
T PRK12810        196 ID-------RRI----ELMEGEGIEFRTGVE-V-G-KDITAE----QLLAEYDAVFLGGGAYKPRDLGIPGRD--LD--G  253 (472)
T ss_pred             HH-------HHH----HHHHHCCCEEEECEE-C-C-CCCCHH----HHHCCCCEEEEECCCCCCCCCCCCCCC--CC--C
T ss_conf             99-------999----999857978990523-1-8-757699----985057989990377878527877766--78--8


Q ss_pred             EEEECCCCC--------------CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCCCC------
Q ss_conf             453057411--------------111133321012344543320132201220-11100001112212222112------
Q gi|254781053|r  161 IVSSTGALS--------------FSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEIAA------  219 (466)
Q Consensus       161 ~~t~~~~~~--------------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~~~------  219 (466)
                      ++..-+++.              .....|+++|||||.+|+++|....|+|.+ |+..+..+  +|..+.+...      
T Consensus       254 V~~A~dfL~~~~~~~~~~~~~~~~~~~Gk~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~--mp~~~~~~~~~~~~~~  331 (472)
T PRK12810        254 VHFAMDFLIQNTRVLGGEKDEPFILAKGKHVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMP--MPPSRRNKNNPWPYWP  331 (472)
T ss_pred             EEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC--CCCCCCCCCCCHHHHH
T ss_conf             58869999999875337876666322476589989866899999999973896899975114--8813233237232334


Q ss_pred             -CC-CCCCCCCCCCCCCCHHHHHHHCCCCCCE-EEE---EE---------ECCCCCCCEEEEEEECCCCEEEECCCCCEE
Q ss_conf             -22-2222222222322002344201468721-699---97---------213321100000232045312103678400
Q gi|254781053|r  220 -HC-LKIMSKQGMNFQLNSKVSSVKKVKGKAQ-VVY---RS---------TDDEPINIEADAVLVAAGRRPYTKGLGLEE  284 (466)
Q Consensus       220 -~~-~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~---~~---------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~  284 (466)
                       .. .+...++||+++++..+.++...++.+. +.+   ..         ..+++.++++|.|++|+|+.|+...+ ++.
T Consensus       332 ~~~ev~~A~eEGv~~~~~~~p~~i~~~~g~v~gv~~~~~~~~~g~~~~~~~~g~e~~i~aD~VI~AiGq~~~~~~~-~~~  410 (472)
T PRK12810        332 MKFEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVETELGKGRRKFEPVPGSEFVLPADLVLLAMGFTGPEPEW-LAQ  410 (472)
T ss_pred             HHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCCCCC-CCC
T ss_conf             6888999997488257335736998149869999999977617887625669954999899999988888886322-225


Q ss_pred             EECCCCCCCCCCCCC-CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             001267642233377-6333026848702433354344300012320120111
Q gi|254781053|r  285 IGINIDHRGCIEIGG-QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       285 ~gi~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      .|+++|++|.|.||+ .+|||+|+|||+|||..++.++..|+.+|+.||..|.
T Consensus       411 ~gl~~d~~G~i~vd~~~~~Ts~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~  463 (472)
T PRK12810        411 FGVELDERGRVAADEGAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID  463 (472)
T ss_pred             CCCEECCCCCEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             68028799988868998745999999836877781699999999999999999


No 53 
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97  E-value=4.2e-31  Score=244.92  Aligned_cols=277  Identities=23%  Similarity=0.306  Sum_probs=187.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  ..=.||.                          .+++-   
T Consensus       312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGl--L~yGIP~--------------------------fRLPK---  360 (639)
T PRK12809        312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM--LTFGIPP--------------------------FKLDK---  360 (639)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEECCCC--------------------------CCCCH---
T ss_conf             8999897589999999999759906999368888986--8535874--------------------------52777---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
                           +++++..    ..++..||++..+.-  ++ +.+.+.    +-.=+||.++|+||+. |+  .+||.+.    ..
T Consensus       361 -----~vv~rei----~~l~~lGV~f~~n~~--VG-kDit~~----eL~~~yDAVflg~Ga~~~~~l~IpGedl----~G  420 (639)
T PRK12809        361 -----TVLSQRR----EIFTAMGIDFHLNCE--IG-RDITFS----DLTSEYDAVFIGVGTYGMMRADLPHEDA----PG  420 (639)
T ss_pred             -----HHHHHHH----HHHHHCCCEEEECCE--EC-CCCCHH----HHHHHCCEEEEEECCCCCCCCCCCCCCC----CC
T ss_conf             -----8999999----999864988991967--79-868899----9973179899973678885489887778----78


Q ss_pred             EEEECCCCC-----------CCCC------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCC
Q ss_conf             453057411-----------1111------3332101234454332013220122-01110000111-221222211222
Q gi|254781053|r  161 IVSSTGALS-----------FSSV------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHC  221 (466)
Q Consensus       161 ~~t~~~~~~-----------l~~~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~  221 (466)
                      ++..-+++.           ..+.      .|+++|||||.+|+..|-...|+|. +||+++|+++- +|....+    +
T Consensus       421 V~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~eMPA~~~E----v  496 (639)
T PRK12809        421 VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKE----V  496 (639)
T ss_pred             CEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEE----C
T ss_conf             387699999999864388644457754556777999899821899999999839987752154774579997003----0


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEE---EE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf             22222222223220023442014687-21-699---97-------------21332110000023204531210367840
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVY---RS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE  283 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~---~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le  283 (466)
                       ...+++||+++++..+.+|..++++ +. +.+   ..             ..|++..+++|.||+|+|++|+... .++
T Consensus       497 -~~A~EEGV~f~~~~~P~~i~~de~G~V~gv~~vr~~lgepd~~GRr~p~~i~Gse~~i~aD~VI~AiG~~~~~~~-~~~  574 (639)
T PRK12809        497 -VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP-WLQ  574 (639)
T ss_pred             -CCHHHCCEEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEECCEEEECCCCCCCCCC-CCC
T ss_conf             -101218738982788579996798639999999999567588888734760893699989999998878998875-334


Q ss_pred             EEECCCCCCCCCCCCCC----CEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC
Q ss_conf             00012676422333776----3330268487024333543443000123201201112
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQ----FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~----~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~  337 (466)
                      ..|++++++|.|.+|+.    +|||+|+|||+||+..++.+.-.|+.+|+.||+.|..
T Consensus       575 ~~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~G~stVV~AI~~Gr~AA~sI~~  632 (639)
T PRK12809        575 GSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             CCCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6785588999886178777676689999998278786736999999999999999999


No 54 
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97  E-value=3.6e-31  Score=245.43  Aligned_cols=274  Identities=26%  Similarity=0.324  Sum_probs=187.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  ..=.||.                          .+++  + 
T Consensus       441 KVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~--L~yGIP~--------------------------fRLP--k-  489 (760)
T PRK12778        441 KVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGV--LKYGIPE--------------------------FRLP--N-  489 (760)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE--EEECCCC--------------------------CCCC--H-
T ss_conf             8999897789999999999779906998058888975--7654861--------------------------1087--8-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC---CCEEECCCCCCC-CCC--CCCCCCCCC
Q ss_conf             99999999987777787640043101100111002221023575211232---210000467665-244--457665321
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI---EAKNIVIATGSE-ASG--LPGMSIDFD  157 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i---~ad~iviATGs~-p~~--iP~~~~~~~  157 (466)
                           +++++..    ..+++.||++..+.. + + +.+.+      +.+   .||.++||||+. |+.  +||.+.   
T Consensus       490 -----~iv~~eI----~~l~~lGV~~~~n~~-v-G-kdit~------~eL~~egyDAVfla~Ga~~pr~l~IpGe~l---  548 (760)
T PRK12778        490 -----KIVDVEI----ENLVKMGVTFEKDCI-V-G-KTISV------EELEEEGFKGIFVASGAGLPNFMNIPGENS---  548 (760)
T ss_pred             -----HHHHHHH----HHHHHCCCEEECCCE-E-C-CCCCH------HHHHHCCCCEEEEECCCCCCCCCCCCCCCC---
T ss_conf             -----9999999----999864979989957-7-8-86899------999758899999940678775289998667---


Q ss_pred             CEEEEEECCCCC---C-------C----CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf             002453057411---1-------1----1133321012344543320132201220-111000011-1221222211222
Q gi|254781053|r  158 EQVIVSSTGALS---F-------S----SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT-ILNGMDKEIAAHC  221 (466)
Q Consensus       158 ~~~~~t~~~~~~---l-------~----~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-ll~~~d~~~~~~~  221 (466)
                       ..+++..+++.   +       .    ...|+++|||||.+|+.+|....|+|++ |++++|+++ -+|...    +.+
T Consensus       549 -~gV~~a~eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~----~Ei  623 (760)
T PRK12778        549 -INIMSSNEYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARL----EEV  623 (760)
T ss_pred             -CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCH----HHH
T ss_conf             -785877999999764430266678742269889999997609999999998399869997037721199998----999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCE--EE---EEE-------------ECCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf             2222222222322002344201468721--69---997-------------21332110000023204531210367840
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQ--VV---YRS-------------TDDEPINIEADAVLVAAGRRPYTKGLGLE  283 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~--v~---~~~-------------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le  283 (466)
                       +..+++||++++.+.+.++..++++..  +.   ...             .+|++.++++|.|++|+|..||...+ ..
T Consensus       624 -~~A~eEGV~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~-~~  701 (760)
T PRK12778        624 -KHAKEEGIEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVP-SS  701 (760)
T ss_pred             -HHHHHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CC
T ss_conf             -9998579889916897899977996699999999997553777888735659946999999999998689886521-13


Q ss_pred             EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             00012676422333776333026848702433354344300012320120111
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ..|++++++|.|.+|+.+|||.|+|||+|||..++.+.-.|+.+|+.||..|.
T Consensus       702 ~~gl~~~~~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id  754 (760)
T PRK12778        702 IPGLELGRKGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMN  754 (760)
T ss_pred             CCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             66725779997883989634898999867867680599999999999999999


No 55 
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.97  E-value=1.4e-31  Score=248.34  Aligned_cols=372  Identities=20%  Similarity=0.291  Sum_probs=240.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             31999989866899999999879---939999379971502513667370989999999999998667558164775328
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      =-+||||-|+||..+..++.+..   ..++++-.++..     |+               ..+ ....     +-...-+
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-----nY---------------~Ri-~Ls~-----vl~~~~~   57 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-----NY---------------NRI-LLSS-----VLAGEKT   57 (793)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----CC---------------CCE-EECC-----CCCCCCC
T ss_conf             04899924640267999998308655048995267776-----64---------------410-0000-----0289866


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999877777876400431011001-110022210235752112322100004676652444576653210
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE  158 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~  158 (466)
                      .+++           .-....+.++++|+++.+. +-+++...-.|..+. .+++.||++|+||||.|..+|.......+
T Consensus        58 ~edi-----------~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~-g~~~~YDkLilATGS~pfi~PiPG~d~~~  125 (793)
T COG1251          58 AEDI-----------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-GRTVSYDKLIIATGSYPFILPIPGSDLPG  125 (793)
T ss_pred             HHHH-----------HCCCHHHHHHCCCEEECCCEEEEECCCCCEEECCC-CCEEECCEEEECCCCCCCCCCCCCCCCCC
T ss_conf             8887-----------60322058775918971880478516765688468-85840432787057655656789987787


Q ss_pred             EEE-EEECCCCCC---CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             024-530574111---1113332101234454332013220122011100001112-21222211222222222222232
Q gi|254781053|r  159 QVI-VSSTGALSF---SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-NGMDKEIAAHCLKIMSKQGMNFQ  233 (466)
Q Consensus       159 ~~~-~t~~~~~~l---~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-~~~d~~~~~~~~~~l~~~gV~i~  233 (466)
                      ... -|.+|.+.+   .+--++-+|||||..|+|.|..|..+|.+||+++.++.+| ..+|+.....+++.|++.||+++
T Consensus       126 v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~  205 (793)
T COG1251         126 VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVL  205 (793)
T ss_pred             EEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             12783199999999998606885897551141678878874797348987336688976526889999999886060453


Q ss_pred             CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECC
Q ss_conf             20023442014687216999721332110000023204531210367840000126764223337763330268487024
Q gi|254781053|r  234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGD  313 (466)
Q Consensus       234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GD  313 (466)
                      ++...+++...+...  .++..+|.  .+++|.|++|+|.+||++.  ...+|+.+++ | |.||++||||+|+|||+|+
T Consensus       206 l~~~t~ei~g~~~~~--~vr~~DG~--~i~ad~VV~a~GIrPn~el--a~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGE  277 (793)
T COG1251         206 LEKNTEEIVGEDKVE--GVRFADGT--EIPADLVVMAVGIRPNDEL--AKEAGLAVNR-G-IVVNDYMQTSDPDIYAVGE  277 (793)
T ss_pred             CCCHHHHHHCCCCEE--EEEECCCC--CCCCEEEEEECCCCCCCHH--HHHCCCCCCC-C-EEECCCCCCCCCCEEEHHH
T ss_conf             132024564576403--67605687--3442069996230466176--7861766589-8-0563655556777665176


Q ss_pred             CCCC----CCCCCEECCCCCCEEECCCCCCCC-CCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCE-EEEEEEECCCCHH
Q ss_conf             3335----434430001232012011122222-223333221000144551001478886234665-8999960447034
Q gi|254781053|r  314 VVRG----PMLAHKAEDEGIAVAEIISGQKGH-VNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSY-KVGKFPFSANGRA  387 (466)
Q Consensus       314 v~g~----~~l~~~A~~~g~~aa~~i~~~~~~-~~~~~ip~~vft~peia~vGlte~~a~~~~~~~-~v~~~~~~~~~ra  387 (466)
                      |+..    +.|.--++.|++++++|+.+.... +. ..++   +|.            +|-.|+|+ ..+.+.-....+.
T Consensus       278 cae~~g~~yGLVaP~yeqa~v~a~hl~~~~~~~y~-gsv~---stk------------LKv~Gvdl~S~GD~~e~~~~~~  341 (793)
T COG1251         278 CAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYE-GSVT---STK------------LKVSGVDVFSAGDFQETEGAES  341 (793)
T ss_pred             HHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCC-CCCC---HHH------------HCCCCCCEEECCCHHHCCCCCE
T ss_conf             89761844001268999999999875067444554-5542---454------------3155663330111322489944


Q ss_pred             HH-CCCCCE-EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf             41-889833-899999789986999999829988999999999987898789963
Q gi|254781053|r  388 RS-MNSIDG-FVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLAR  440 (466)
Q Consensus       388 ~~-~~~~~g-~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~  440 (466)
                      +. .+..++ +-|++. ++ ++|+|+-++|+.+. - +-+--+|..+..+.++.+
T Consensus       342 iv~~D~~~~iYKrlvL-~d-d~IvgavL~GDt~d-~-~~l~~li~~~~~~se~r~  392 (793)
T COG1251         342 IVFRDEQRGIYKKLVL-KD-DKIVGAVLYGDTSD-G-GWLLDLILKGADISEIRD  392 (793)
T ss_pred             EEEECCCCCCEEEEEE-EC-CEEEEEEEEEECCC-C-HHHHHHHHCCCCCCCCCH
T ss_conf             8986541130048998-68-90999999742365-2-479999862788643552


No 56 
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.97  E-value=5e-30  Score=237.10  Aligned_cols=289  Identities=25%  Similarity=0.300  Sum_probs=182.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||-+|.++|+.||++||++..||.            |              .|||  .+.++|=..+
T Consensus       153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGL------------L--------------~YGI--PnmKLdK~e~  204 (517)
T TIGR01317       153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGL------------L--------------RYGI--PNMKLDKEEI  204 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC------------C--------------CCCC--CCCCCCHHHH
T ss_conf             6899756757999999985358838997436788863------------0--------------2488--8743373889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEE--E------EECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCC
Q ss_conf             999999999877777876400431011001--1------1002221023575211232210000467665-244457665
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGS--A------RIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSI  154 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~--a------~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~  154 (466)
                      ++||-           .+|+..||++..+.  |      ++++-.++.|..  .+-.=+||.||+||||. ||+||....
T Consensus       205 v~RRi-----------~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~--~~L~~~fDAVVLa~Ga~~pRDLpI~GR  271 (517)
T TIGR01317       205 VDRRI-----------DLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA--DELKEDFDAVVLATGATKPRDLPIPGR  271 (517)
T ss_pred             HHHHH-----------HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH--HHHHHHCCEEEEECCCCCCCCCCCCCC
T ss_conf             99999-----------99874784201783004653444200022342687--998714693898337886010355776


Q ss_pred             CCCCEEE----EEE-------CCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCC------
Q ss_conf             3210024----530-------5741111------1133321012344543320132201220-11100001112------
Q gi|254781053|r  155 DFDEQVI----VSS-------TGALSFS------SVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTIL------  210 (466)
Q Consensus       155 ~~~~~~~----~t~-------~~~~~l~------~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll------  210 (466)
                      ++.+.++    +++       +++.+..      -..|+|||||||.+|..|-..=.|-|+. |+-++-.|++=      
T Consensus       272 EL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~  351 (517)
T TIGR01317       272 ELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKD  351 (517)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf             64660378655467548560885366678873542286789975787562245632355435523025688877677278


Q ss_pred             ---CCCCCCCC-CCCCCCCCC-CC--CCCCCCHHHHHHHCCC-CCCE----------------EEEEEECCCCCCCEEEE
Q ss_conf             ---21222211-222222222-22--2232200234420146-8721----------------69997213321100000
Q gi|254781053|r  211 ---NGMDKEIA-AHCLKIMSK-QG--MNFQLNSKVSSVKKVK-GKAQ----------------VVYRSTDDEPINIEADA  266 (466)
Q Consensus       211 ---~~~d~~~~-~~~~~~l~~-~g--V~i~~~~~v~~i~~~~-~~~~----------------v~~~~~~g~~~~i~~D~  266 (466)
                         |.+..-+. ++..+..++ -|  .+-+ ...-+++..++ +.++                -.+..-.|.++..+||.
T Consensus       352 npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdL  430 (517)
T TIGR01317       352 NPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADL  430 (517)
T ss_pred             CCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHE
T ss_conf             648657511330266898985179560123-1001335676884487888899999877898288886079752011012


Q ss_pred             EEECCCCEE-EECCCCCEEEECCCCCCCCCC-CCCCCE---EECCC--CEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             232045312-103678400001267642233-377633---30268--4870243335434430001232012011
Q gi|254781053|r  267 VLVAAGRRP-YTKGLGLEEIGINIDHRGCIE-IGGQFQ---TSIST--IYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       267 vl~a~G~~P-n~~~l~Le~~gi~~~~~G~I~-vd~~~~---Ts~p~--IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      ||+|+|++. ...+ .|+..+|+.+.||.|. ..+..+   ||+||  |||||||-.+..|.-+|++|||.||...
T Consensus       431 VLLAmGFvGPE~~G-lL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EGR~aA~aV  505 (517)
T TIGR01317       431 VLLAMGFVGPEQAG-LLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEGRKAARAV  505 (517)
T ss_pred             EEEECCCCCCCCCC-CHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             33202675764200-3144444437787466323677765887189726876248988037788888878999986


No 57 
>PTZ00318 NADH dehydrogenase; Provisional
Probab=99.96  E-value=5e-31  Score=244.37  Aligned_cols=304  Identities=18%  Similarity=0.274  Sum_probs=189.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      =-|||||||.||+++|..|.+...+|+||++...+                    +++.+..+..       ...++...
T Consensus        11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~--------------------lF~PLL~qvA-------tGtLe~r~   63 (514)
T PTZ00318         11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHM--------------------VFTPLLPQTT-------TGTLEFRS   63 (514)
T ss_pred             CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCC--------------------CCCHHHHHHH-------HCCCCHHH
T ss_conf             85899997699999999738689828999999985--------------------0102167662-------05777577


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCC---CCC-------CCCCCCCEEECCCCCCCCCC--
Q ss_conf             999999999987777787640043101100111002--2210235---752-------11232210000467665244--
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVK---GSS-------SEETIEAKNIVIATGSEASG--  148 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~---~~~-------~~~~i~ad~iviATGs~p~~--  148 (466)
                      +.+-...+.        ..+...+..++.+.+.=+|  .++|...   ..+       ...++.||+||||+||.++.  
T Consensus        64 I~~Pir~i~--------~~~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FG  135 (514)
T PTZ00318         64 VCEPITRIQ--------PALAKLPNRFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFN  135 (514)
T ss_pred             EECCHHHHH--------HHHCCCCCEEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCC
T ss_conf             222178876--------765136745999999887121078999740124665444456636428878986786556789


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCC----------CCC-------C---CCCCCCCCCCCCCCCHHHHHCC-----------
Q ss_conf             45766532100245305741111----------113-------3---3210123445433201322012-----------
Q gi|254781053|r  149 LPGMSIDFDEQVIVSSTGALSFS----------SVP-------K---NLLVIGAGVIGLELGSVWTRLG-----------  197 (466)
Q Consensus       149 iP~~~~~~~~~~~~t~~~~~~l~----------~~P-------~---~ivIIGgG~ig~E~A~~~~~lG-----------  197 (466)
                      +||...  ..-.+-+-+++..++          .+|       +   +.+|||||++|+|+|..|+.+-           
T Consensus       136 ipGv~E--~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l  213 (514)
T PTZ00318        136 VPGVEE--RAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSL  213 (514)
T ss_pred             CCCHHH--HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             998798--466578899999999999999998507889978932420278977776203289999999998876428123


Q ss_pred             ---CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             ---20111000011122122221122222222222223220023442014687216999721332110000023204531
Q gi|254781053|r  198 ---SCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       198 ---~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                         .+|+|++.+ ++|+.||+.+++..++.|++.||+++++. +.++.  ++.  +..  .+|  +.++++.++|++|.+
T Consensus       214 ~~~~~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~--~~~--v~~--~~G--e~i~~~tvVWtAGV~  283 (514)
T PTZ00318        214 VPFCKVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVT--DKE--VFT--KSG--EVLPTGLVVWSTGVG  283 (514)
T ss_pred             CCCCEEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEE--CCE--EEE--CCC--CEEECCEEEEECCCC
T ss_conf             010037886050-01210898999999999987894998362-89986--895--896--798--199866899915887


Q ss_pred             EEECCCCCEEEECCCCCCCCCCCCCCCEE-----ECCCCEEECCCCC-----CCCCCCEECCCCCCEEECCCC----CC-
Q ss_conf             21036784000012676422333776333-----0268487024333-----543443000123201201112----22-
Q gi|254781053|r  275 PYTKGLGLEEIGINIDHRGCIEIGGQFQT-----SISTIYAIGDVVR-----GPMLAHKAEDEGIAVAEIISG----QK-  339 (466)
Q Consensus       275 Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g-----~~~l~~~A~~~g~~aa~~i~~----~~-  339 (466)
                      |+--   .+.++++.+++|+|.||++||.     +.|||||+|||+.     .|+++++|.+||+.+|+||..    ++ 
T Consensus       284 a~pl---~~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~~  360 (514)
T PTZ00318        284 PSPL---TKALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKPM  360 (514)
T ss_pred             CCCH---HHHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6703---6656886457983788998676788899997688423346789989993078999999999999998639998


Q ss_pred             -CCCCCCCCCCCEEEHHHHHHHHHC
Q ss_conf             -222233332210001445510014
Q gi|254781053|r  340 -GHVNYGIIPSVVYTHPEVASIGKT  363 (466)
Q Consensus       340 -~~~~~~~ip~~vft~peia~vGlt  363 (466)
                       .+|.|....       .+|++|..
T Consensus       361 ~~pF~Y~~~G-------smA~IG~~  378 (514)
T PTZ00318        361 MAPFVYRSLG-------SMVSLGDN  378 (514)
T ss_pred             CCCCEECCCC-------EEEEECCC
T ss_conf             9996134666-------47884684


No 58 
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.96  E-value=7.1e-30  Score=235.99  Aligned_cols=273  Identities=23%  Similarity=0.320  Sum_probs=182.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||||||||+||.+|+++|++|+++|+.+.+||. +.+ .||.                          .++.- ++
T Consensus       139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~-GIP~--------------------------yRLP~-~v  189 (560)
T PRK12771        139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRY-GIPG--------------------------YRLPR-DV  189 (560)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EEC-CCCC--------------------------CCCCH-HH
T ss_conf             8999897789999999999769858996767888988-835-6875--------------------------44758-99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
                             ++..   ++ .+.+.||++..+.. +-.+  +.+..    -.=.||.++||+|+. ++  .+|+.+.    ..
T Consensus       190 -------l~~e---i~-~i~~~GV~~~~n~~-vg~d--it~~~----L~~~yDAV~la~Ga~~~r~l~i~G~d~----~g  247 (560)
T PRK12771        190 -------LDAE---IQ-RILDLGVEVKLGVR-VGED--ITLEQ----LEGDYDAVFVAIGAQLGKRLPIPGEDA----AN  247 (560)
T ss_pred             -------HHHH---HH-HHHHCCCEEEECCE-ECCC--CCHHH----HHCCCCEEEECCCCCCCCCCCCCCCCC----CC
T ss_conf             -------9999---99-99964967983878-4465--67999----717788899916878776089788776----55


Q ss_pred             EEEECCCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             453057411------11113332101234454332013220122-01110000111-22122221122222222222223
Q gi|254781053|r  161 IVSSTGALS------FSSVPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       161 ~~t~~~~~~------l~~~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~~~~~~l~~~gV~i  232 (466)
                      +++.-+++.      ...+.++++|||||.+|+..|....|+|. +||+++|+++- +|..+.+    +. ..+++||++
T Consensus       248 V~~al~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~E----i~-~A~eEGV~~  322 (560)
T PRK12771        248 VLDAVSFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFE----ID-DALREGVEI  322 (560)
T ss_pred             CEEHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH----HH-HHHHCCCEE
T ss_conf             2405999999756897556886899899822899999999738976999831442028999899----98-787479568


Q ss_pred             CCCHHHHHHHCCCCCCE-EEEEE----------ECCCCCCCEEEEEEECCCCEEEECCCCCEE-EECCCCCCCCCCCC-C
Q ss_conf             22002344201468721-69997----------213321100000232045312103678400-00126764223337-7
Q gi|254781053|r  233 QLNSKVSSVKKVKGKAQ-VVYRS----------TDDEPINIEADAVLVAAGRRPYTKGLGLEE-IGINIDHRGCIEIG-G  299 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~~~-v~~~~----------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~gi~~~~~G~I~vd-~  299 (466)
                      ++...+.++...++.+. +.+..          ..++..++++|.|++|+|+.|+.+.|  +. .+++.+ +|.|.+| +
T Consensus       323 ~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~  399 (560)
T PRK12771        323 NWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRN  399 (560)
T ss_pred             EECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCC
T ss_conf             96346479980698598999999998899887889972675468999922578873000--236554717-998884787


Q ss_pred             CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             633302684870243335434430001232012011
Q gi|254781053|r  300 QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       300 ~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      +++||.|+|||+||+..+|.+.-.|+.+|+.||..|
T Consensus       400 ~~~Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~I  435 (560)
T PRK12771        400 FRMTGRPGVFAGGDMVPGERTVTTAVGHGKKAARHI  435 (560)
T ss_pred             CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             665799886743654668418999999999999999


No 59 
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96  E-value=6.3e-30  Score=236.38  Aligned_cols=275  Identities=24%  Similarity=0.337  Sum_probs=177.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||.+|+++|++|+++|+.+..||.  ..                        |||.  +.+++- .+
T Consensus       285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGl--L~------------------------yGIP--~fRLpk-~v  335 (604)
T PRK13984        285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGV--MR------------------------YGIP--SYRLPD-EA  335 (604)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE--EE------------------------ECCC--CCCCCH-HH
T ss_conf             8999898689999999999869868997456778972--33------------------------1587--222878-99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-244--457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASG--LPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~--iP~~~~~~~~~~  160 (466)
                             +++..    ..++..||++..+.- + + +.+.+..    -.=.||.++||||+. |+.  +||.+.    ..
T Consensus       336 -------v~rei----~~i~~~GV~f~~n~~-V-G-kDit~ee----L~~~yDAVfLa~Ga~~~r~L~IpGedl----~G  393 (604)
T PRK13984        336 -------LDKDI----AFIEALGVKIHTNTR-V-G-KDISLEE----LREKHDAVFVSTGFTLGRSTRIPGSDH----PN  393 (604)
T ss_pred             -------HHHHH----HHHHHCCCEEECCCE-E-C-CCCCHHH----HHHCCCEEEEECCCCCCCCCCCCCCCC----CC
T ss_conf             -------99999----999972989976857-7-9-8478999----970589999953888776689899888----88


Q ss_pred             EEEECCCCC-----------CCCCCCCCCCCCCCCCCCCCCHHHHHC-----C-CCHHHH-HHC-CCCCCCCCCCCCCCC
Q ss_conf             453057411-----------111133321012344543320132201-----2-201110-000-111221222211222
Q gi|254781053|r  161 IVSSTGALS-----------FSSVPKNLLVIGAGVIGLELGSVWTRL-----G-SCVKII-EHS-GTILNGMDKEIAAHC  221 (466)
Q Consensus       161 ~~t~~~~~~-----------l~~~P~~ivIIGgG~ig~E~A~~~~~l-----G-~~Vtli-~~~-~~ll~~~d~~~~~~~  221 (466)
                      +++.-+++.           ..+++|+++|||||.+|+.+|-...|+     | .+|+++ .++ ..-+|....+    +
T Consensus       394 V~~AldfL~~~~~~~~g~~~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~E----v  469 (604)
T PRK13984        394 VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEE----I  469 (604)
T ss_pred             CEEHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHH----H
T ss_conf             176799999998654257876666975899898188999999998730132477430551787873428998898----8


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCE-EEEE------E---------ECCCCCCCEEEEEEECCCCEEEECCCCCEEE
Q ss_conf             2222222222322002344201468721-6999------7---------2133211000002320453121036784000
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQ-VVYR------S---------TDDEPINIEADAVLVAAGRRPYTKGLGLEEI  285 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~------~---------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~  285 (466)
                       +..+++||++++...+.++...++.+. +.+.      +         .++++..+++|.||+|+|+.|+.+.|. +..
T Consensus       470 -~~A~EEGV~f~~~~~P~ei~~e~GkV~gv~~~~~l~~~D~~GR~~p~~~~gse~~i~aD~VI~AiGq~p~~~~l~-~~~  547 (604)
T PRK13984        470 -EEGLEEGVKIYPGWGPMEVVIENDKVKGVKFKKCLEVFDEEGRFNPKFDESEKIVVDADMVVEAIGQAPDYSYLP-EEI  547 (604)
T ss_pred             -HHHHHCCCEEEECCCCEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCHHH-HHH
T ss_conf             -999868878994777689994199699999999987798999880155699569998999999985888710002-353


Q ss_pred             ECCCC-CCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             01267-6422333776333026848702433354344300012320120111
Q gi|254781053|r  286 GINID-HRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       286 gi~~~-~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      +..++ .+|.|.+|+++|||+|+|||+||+..++. .-.|+.+|+.||+.|.
T Consensus       548 ~~~l~~~rG~I~~d~~~~Ts~pgVFAgGD~v~G~s-VV~AIa~GR~AA~~Id  598 (604)
T PRK13984        548 KSKLEFVRGRIKTNEYRQTSVPWLFAGGDIVHGPD-IIHGVADGYWAAKGID  598 (604)
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCH-HHHHHHHHHHHHHHHH
T ss_conf             11232568859858998778999887778687628-9999999999999999


No 60 
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.96  E-value=6.7e-30  Score=236.18  Aligned_cols=386  Identities=24%  Similarity=0.270  Sum_probs=254.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             999989866899999999879--93999937997150-251366737098999999999999866755816477532899
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG-TCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GG-tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      ++|||+|+||+++|..+.+..  .++.++..++.... .|.    +| +                   .+  .....+..
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~----~~-~-------------------~~--~~~~~~~~   54 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP----LS-L-------------------YV--GGGIASLE   54 (415)
T ss_pred             CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----CC-E-------------------EE--CCCCCCCH
T ss_conf             98982559999999999850777885999523544555576----23-0-------------------53--34423400


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             99999999999877777876400431011001-11002221023575211232210000467665244457665321002
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGS-ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQV  160 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~~  160 (466)
                      .++...       .    .. ...+++...+. ...+++..-.|...++  .+.||++++|||++|...|+.    ....
T Consensus        55 ~~~~~~-------~----~~-~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~yd~LvlatGa~~~~~~~~----~~~~  116 (415)
T COG0446          55 DLRYPP-------R----FN-RATGIDVRTGTEVTSIDPENKVVLLDDG--EIEYDYLVLATGARPRPPPIS----DWEG  116 (415)
T ss_pred             HHCCCC-------C----HH-HCCCEEECCCCEEEECCCHHCEEEECCC--CCCCCCEEECCCCCCCCCCCC----CCCC
T ss_conf             211564-------2----34-3167286036468722612356991587--072652588147655667754----2224


Q ss_pred             EEEEC---CCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf             45305---741111---1133321012344543320132201220111000011122122-2211222222222222232
Q gi|254781053|r  161 IVSST---GALSFS---SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMD-KEIAAHCLKIMSKQGMNFQ  233 (466)
Q Consensus       161 ~~t~~---~~~~l~---~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d-~~~~~~~~~~l~~~gV~i~  233 (466)
                      .++..   ++..++   ..+++++|+|+|++|+|+|..+++.|.+||+++..+++++.+- +++++.+.+.|++.||+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~  196 (415)
T COG0446         117 VVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELL  196 (415)
T ss_pred             CCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf             43246899998765356677739998934999999999987799389997566423311218899999999997294898


Q ss_pred             CCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCCCCCCCEEE-CCCCEEE
Q ss_conf             20023442014687216999721332110000023204531210367840000-126764223337763330-2684870
Q gi|254781053|r  234 LNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIEIGGQFQTS-ISTIYAI  311 (466)
Q Consensus       234 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~vd~~~~Ts-~p~IyA~  311 (466)
                      ++..+.+++...+...... ........+++|.+++++|.+||+...  +..+ ......|+|.||++++|+ .++|||+
T Consensus       197 ~~~~v~~i~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~vya~  273 (415)
T COG0446         197 LGTKVVGVEGKGNTLVVER-VVGIDGEEIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAA  273 (415)
T ss_pred             CCCEEEEEEECCCCEEEEE-EEEEEEEEECCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCEEEECCCCEECCCCEEEE
T ss_conf             2652699992586215544-566530352233698789757761015--4654440137872999824542166888980


Q ss_pred             CCCCCCC----------CCCCEECCCCCCEEECCCCCCCCCCCCCCCCCE--EEHHHHHHHHHCHHHHHHCCCCEEEEEE
Q ss_conf             2433354----------344300012320120111222222233332210--0014455100147888623466589999
Q gi|254781053|r  312 GDVVRGP----------MLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVV--YTHPEVASIGKTEEQLKCEKKSYKVGKF  379 (466)
Q Consensus       312 GDv~g~~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~ip~~v--ft~peia~vGlte~~a~~~~~~~~v~~~  379 (466)
                      |||+..+          ++.+.|..++.+++.++.+. .++ ...+++..  ..+...+.+|+++.  ++...+ .+..+
T Consensus       274 GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~  348 (415)
T COG0446         274 GDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVV  348 (415)
T ss_pred             CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC-CCCCCCEEEECCCEEEEEEEECCC--CEEEEE-EEEEE
T ss_conf             3320024432220123101244554300245540344-333-323451144047614677750355--223345-55664


Q ss_pred             EECCCCHHHHCC-CCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             604470344188-98338999997899869999998299889999999999878987899637843
Q gi|254781053|r  380 PFSANGRARSMN-SIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHA  444 (466)
Q Consensus       380 ~~~~~~ra~~~~-~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~  444 (466)
                      ......++.... ......|+.++.++++++|++. -. ....++.++.++..+.++.++......
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (415)
T COG0446         349 SGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALDAI  412 (415)
T ss_pred             CCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHHHHHCCCCHHHHHCCCC
T ss_conf             14565311126776433303541155210022101-36-888864455541010120021201002


No 61 
>KOG1336 consensus
Probab=99.96  E-value=9e-30  Score=235.24  Aligned_cols=363  Identities=22%  Similarity=0.322  Sum_probs=228.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             9999898668999999998799--39999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKN--KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      ++|||+||+|..|+..+++.|.  +.+|+-++..+          |          +.. .+... +             
T Consensus        77 fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------p----------ydr-~~Ls~-~-------------  121 (478)
T KOG1336          77 FVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------P----------YDR-ARLSK-F-------------  121 (478)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC----------C----------CCC-HHCCC-C-------------
T ss_conf             99976882033557667752887660787423347----------6----------540-00133-2-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-EC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             999999999987777787640043101100111-00--222102357521123221000046766524445766532100
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSAR-IV--SNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~-~~--~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                          .....+.+.......++..+|+++.+..- =+  ..+++.-   ++.++++|++++|||||+|+.+|.......+ 
T Consensus       122 ----~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~---~~Ge~~kys~LilATGs~~~~l~~pG~~~~n-  193 (478)
T KOG1336         122 ----LLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVL---GNGETLKYSKLIIATGSSAKTLDIPGVELKN-  193 (478)
T ss_pred             ----EEECCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCCEEEE---CCCCEEECCEEEEEECCCCCCCCCCCCCCCC-
T ss_conf             ----01014562105826676538237970305886414657996---7983530106999615766658988715611-


Q ss_pred             EEEEECCCCCCC------CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             245305741111------11333210123445433201322012201110000111221-22221122222222222223
Q gi|254781053|r  160 VIVSSTGALSFS------SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQGMNF  232 (466)
Q Consensus       160 ~~~t~~~~~~l~------~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i  232 (466)
                       +.+-+++-+.+      ...++++++|+|++|+|+|..+..-+.+||++++.+.++++ |-+++++.+++.++++||++
T Consensus       194 -v~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~  272 (478)
T KOG1336         194 -VFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKF  272 (478)
T ss_pred             -EEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             -4665157888999987155856999775288999999997458357997267641043441778999999998459399


Q ss_pred             CCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEEC
Q ss_conf             22002344201468721699972133211000002320453121036784000012676422333776333026848702
Q gi|254781053|r  233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIG  312 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~G  312 (466)
                      ++++.+.+++....+....+...++  .++++|.+++.+|.+|||+.  ++. |+.++++|+|.||+++|||+|||||+|
T Consensus       273 ~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~--~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiG  347 (478)
T KOG1336         273 YLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSF--LEK-GILLDSKGGIKVDEFFQTSVPNVYAIG  347 (478)
T ss_pred             EEECCEEECCCCCCCCEEEEEECCC--CEECCCEEEEEECCCCCCCC--CCC-CCEECCCCCEEEHHCEEECCCCCCCCC
T ss_conf             9804200012478873799981248--77426769980166246654--434-410024687750000120358700114


Q ss_pred             CCCCCCCC--C------C--EECCCCCCE--EECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEE
Q ss_conf             43335434--4------3--000123201--2011122222223333221000144551001478886234665899996
Q gi|254781053|r  313 DVVRGPML--A------H--KAEDEGIAV--AEIISGQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFP  380 (466)
Q Consensus       313 Dv~g~~~l--~------~--~A~~~g~~a--a~~i~~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~  380 (466)
                      ||+..|.-  .      |  .|..+|+-+  +-++..+..   |+.+|..   .+-+.  ++.   .+..|..+.  ...
T Consensus       348 Dva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~---~~~lPyf---~t~~f--~~~---~~~~G~g~~--~~v  414 (478)
T KOG1336         348 DVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA---YDYLPYF---YTRFF--SLS---WRFAGDGVG--DVV  414 (478)
T ss_pred             CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHH---HHHHH--HHH---CCCCCCCCC--CEE
T ss_conf             1440001333443544278899998876656443267664---1013147---77775--210---103576756--525


Q ss_pred             ECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             04470344188983389999978998699999982998899999999998789878996
Q gi|254781053|r  381 FSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLA  439 (466)
Q Consensus       381 ~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~  439 (466)
                      .-      ...+...|+.-.++   +..+++-.-+ +-.|..+.++-.++++-.++.+.
T Consensus       415 ~~------G~~e~~~f~ay~~k---~~~v~a~~~~-g~~~~~~~~a~l~~~~~~v~~~~  463 (478)
T KOG1336         415 LF------GDLEPGSFGAYWIK---GDKVGAVAEG-GRDEEVSQFAKLARQGPEVTSLK  463 (478)
T ss_pred             EE------CCCCCCCCEEEEEE---CCEEEEEECC-CCCHHHHHHHHHHHCCCCCHHHH
T ss_conf             64------46666521456751---4179999536-88767899999986398620344


No 62 
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.95  E-value=6.5e-28  Score=221.70  Aligned_cols=278  Identities=24%  Similarity=0.308  Sum_probs=186.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+||||++||..|++.|.+|+++|+.+..||... +| ||.                          .++. +.+
T Consensus       308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~-YG-IPe--------------------------FRLP-K~I  358 (944)
T PRK12779        308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLR-YG-IPE--------------------------FRLP-NQL  358 (944)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-EC-CCC--------------------------CCCC-HHH
T ss_conf             679988576899999999977993399944787885589-55-876--------------------------6687-899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
                             ++...    ..+++.||++....-  + .+++.++.-   ..=.||.+.||||+. |+  .+||...    ..
T Consensus       359 -------V~~EI----~~l~~lGV~f~~n~~--V-Gk~~tl~eL---~~eGydAVfIg~GAg~p~~l~IpGE~L----~G  417 (944)
T PRK12779        359 -------IDDVV----EKIKLLGGRFVKNFV--V-GKTATLEDL---KAEGFWKIFVGTGAGLPTFMNVPGEHL----LG  417 (944)
T ss_pred             -------HHHHH----HHHHHCCEEEEECCE--E-CCCCCHHHH---HHCCCCEEEEEECCCCCCCCCCCCCCC----CC
T ss_conf             -------99999----999967839997856--4-776889999---768999899974788875689888777----68


Q ss_pred             EEEECCCCC---C-------------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCCCCCCCCCC
Q ss_conf             453057411---1-------------11133321012344543320132201220111000011-122122221122222
Q gi|254781053|r  161 IVSSTGALS---F-------------SSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDKEIAAHCLK  223 (466)
Q Consensus       161 ~~t~~~~~~---l-------------~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~~~~~~~~~  223 (466)
                      +++..+++.   +             ....|+++|||||.+|+.+|-.-.|+|.+||+++|+.+ =||.-.++    + .
T Consensus       418 V~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EE----i-~  492 (944)
T PRK12779        418 VMSANEFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----L-H  492 (944)
T ss_pred             EEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHH----H-H
T ss_conf             2568999998643123566456864267898799989956699999998852987899984587658988999----9-8


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEE---EE---EEE------------CCCCCCCEEEEEEECCCCEEEECCCCCEE-
Q ss_conf             222222223220023442014687216---99---972------------13321100000232045312103678400-
Q gi|254781053|r  224 IMSKQGMNFQLNSKVSSVKKVKGKAQV---VY---RST------------DDEPINIEADAVLVAAGRRPYTKGLGLEE-  284 (466)
Q Consensus       224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v---~~---~~~------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-  284 (466)
                      ..+++||++.+=+.+.++..++.+..+   .+   ..+            .+++..+++|.|++|+|..||-- + .+. 
T Consensus       493 hA~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpl-i-~~t~  570 (944)
T PRK12779        493 HALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-M-KDAE  570 (944)
T ss_pred             HHHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC-C-CCCC
T ss_conf             8985792899814966552446897788999998535898877897887779716977799999057899951-0-1368


Q ss_pred             EECCCCCCCCCCCCC-CCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCCC
Q ss_conf             001267642233377-633302684870243335434430001232012011122
Q gi|254781053|r  285 IGINIDHRGCIEIGG-QFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQ  338 (466)
Q Consensus       285 ~gi~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~  338 (466)
                      -|++++++|.|.||+ .++||.|+|||.||++.+....-.|+..|+.||+-|.|.
T Consensus       571 p~L~~~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~  625 (944)
T PRK12779        571 PGLKTNKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGE  625 (944)
T ss_pred             CCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7730167851998855576677777633550245678988755459999998546


No 63 
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.95  E-value=1.5e-28  Score=226.37  Aligned_cols=274  Identities=25%  Similarity=0.350  Sum_probs=185.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|.|||+|||||+||..|+++|++|+++|+.+..||. +.                         |||.  +.++.  + 
T Consensus       434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGv-L~-------------------------YGIP--eFRLP--K-  482 (993)
T PRK12775        434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGV-LQ-------------------------YGIP--SFRLP--R-  482 (993)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-EE-------------------------ECCC--CCCCC--H-
T ss_conf             0899783788999999999779964897168889972-68-------------------------4377--76788--8-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC----CCEEECCCCCCC-CC--CCCCCCCCC
Q ss_conf             99999999987777787640043101100111002221023575211232----210000467665-24--445766532
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI----EAKNIVIATGSE-AS--GLPGMSIDF  156 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i----~ad~iviATGs~-p~--~iP~~~~~~  156 (466)
                           ++++...    ..+++.||++..+.-  + .+++.+      +.+    .||.+.|+||+. |+  .+||.+.. 
T Consensus       483 -----~IV~~EI----~~l~~lGVef~~n~~--V-Gkditl------~eL~~e~gyDAVFIg~GA~~~~~lgIpGE~l~-  543 (993)
T PRK12775        483 -----DIIDREI----QRLKDIGVKFETNKV--V-GKTFTI------PQLMNDRGFDAVFVAAGAGAPTFLGIPGEFAG-  543 (993)
T ss_pred             -----HHHHHHH----HHHHHCCEEEECCCE--E-CCCCCH------HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC-
T ss_conf             -----9999999----999878949983888--6-560789------99953459898999558786731898988887-


Q ss_pred             CCEEEEEECCCCC------CC-----C----CCCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCCC
Q ss_conf             1002453057411------11-----1----13332101234454332013220122-01110000111-2212222112
Q gi|254781053|r  157 DEQVIVSSTGALS------FS-----S----VPKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIAA  219 (466)
Q Consensus       157 ~~~~~~t~~~~~~------l~-----~----~P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~~  219 (466)
                         .+++..+++.      ..     +    +.|+++|||||.+++..|-.-.|+|. +||+++|+++- ||.-..+   
T Consensus       544 ---GV~sA~eFLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~VtivYRRte~EMPA~~eE---  617 (993)
T PRK12775        544 ---RVYSANEFLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAATVRCVYRRSEAEAPARIEE---  617 (993)
T ss_pred             ---CCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHH---
T ss_conf             ---81777999999763357767756786457996999899436999889999769986799996885638988999---


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCE--EE---EEEE--C----------CCCCCCEEEEEEECCCCEEEECCCCC
Q ss_conf             222222222222322002344201468721--69---9972--1----------33211000002320453121036784
Q gi|254781053|r  220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQ--VV---YRST--D----------DEPINIEADAVLVAAGRRPYTKGLGL  282 (466)
Q Consensus       220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~--v~---~~~~--~----------g~~~~i~~D~vl~a~G~~Pn~~~l~L  282 (466)
                       + ...+++||++++.+.+.++..++++..  +.   ...+  |          ++..++++|.|++|+|..||--.+ -
T Consensus       618 -V-~~A~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~pnpl~~-~  694 (993)
T PRK12775        618 -I-RHAKEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTKPNPIIG-Q  694 (993)
T ss_pred             -H-HHHHHCCCEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCC-C
T ss_conf             -9-879865939996269716786588639899999816679898889478678854888879999957799983100-3


Q ss_pred             EEEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             0000126764223337763-33026848702433354344300012320120111
Q gi|254781053|r  283 EEIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       283 e~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ..-|++++++|.|.||+.. +||.|+|||.||++.++.+.-.|+.+|+.||+.|.
T Consensus       695 ~~pgL~~~kwGtI~vDe~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAArsId  749 (993)
T PRK12775        695 ATPGLALNKWGNIAADDDTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAAKSIA  749 (993)
T ss_pred             CCCCCEECCCCCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6888222587708989887766888876365612557699999870899999999


No 64 
>pfam02852 Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerization domain. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases.
Probab=99.95  E-value=2.8e-27  Score=217.03  Aligned_cols=110  Identities=54%  Similarity=0.856  Sum_probs=107.8

Q ss_pred             CCCCEEEHHHHHHHHHCHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf             32210001445510014788862346658999960447034418898338999997899869999998299889999999
Q gi|254781053|r  347 IPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGEMIHEAA  426 (466)
Q Consensus       347 ip~~vft~peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~g~~kli~~~~~~~ilG~~~vg~~a~eli~~~a  426 (466)
                      ||+++||+||+|+||+||+||++++.++++.+.+|++++|++.+++++||+|+++|++|++|||+|++|++|+|+||.++
T Consensus         1 iP~~vft~PeiA~VGlte~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~~~ilGa~ivg~~A~elI~~~~   80 (110)
T pfam02852         1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAA   80 (110)
T ss_pred             CCEEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHH
T ss_conf             99488276802688688999997289861788667751888866898610799984478966899999098878999999


Q ss_pred             HHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             999878987899637843778899999999
Q gi|254781053|r  427 VLMEFGGSSEDLARICHAHPTMSEAVREAA  456 (466)
Q Consensus       427 ~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa  456 (466)
                      ++|++++|+++|.+++|+|||++|++++|+
T Consensus        81 ~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa  110 (110)
T pfam02852        81 LAIKMGATVEDLANTIHAHPTLSEALVEAA  110 (110)
T ss_pred             HHHHCCCCHHHHHHCCCCCCCHHHHHHHHC
T ss_conf             999869989999527667987789999759


No 65 
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.94  E-value=2.9e-27  Score=217.00  Aligned_cols=279  Identities=25%  Similarity=0.352  Sum_probs=192.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
                      |.|||||||||.||-.|+|.|.+|+++||.+.+||.  +                        .|||.  ..++| +.++
T Consensus       146 VAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGL--L------------------------tFGIP--sFKLd-K~V~  196 (480)
T TIGR01318       146 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL--L------------------------TFGIP--SFKLD-KAVL  196 (480)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC--C------------------------CCCCC--CHHHH-HHHH
T ss_conf             899778860257999875178559997477030760--1------------------------36888--51102-7899


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC---CCCCCCCCCCCC---
Q ss_conf             99999999877777876400431011001110022210235752112322100004676652---444576653210---
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA---SGLPGMSIDFDE---  158 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p---~~iP~~~~~~~~---  158 (466)
                      .++.           .+|+..||++--+. ++ + +-|..+    .-.=+||.+-|-.|+.-   -.+|+.+.+.--   
T Consensus       197 ~~Rr-----------~if~~MGi~F~Ln~-Ev-G-rD~~l~----~LLe~YDAVFlGvGTY~~~~ggLP~eDa~GV~~AL  258 (480)
T TIGR01318       197 SRRR-----------EIFTAMGIEFKLNT-EV-G-RDISLD----DLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKAL  258 (480)
T ss_pred             HHHH-----------HHHHHCCCEEECCC-EE-E-CCCCHH----HHHHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             9999-----------99975892786581-65-0-325554----44311484896114334312877887742166642


Q ss_pred             EEEE-EECCCCCCCC-----------C------CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC-CCCCCCCCC
Q ss_conf             0245-3057411111-----------1------3332101234454332013220122-01110000111-221222211
Q gi|254781053|r  159 QVIV-SSTGALSFSS-----------V------PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI-LNGMDKEIA  218 (466)
Q Consensus       159 ~~~~-t~~~~~~l~~-----------~------P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l-l~~~d~~~~  218 (466)
                      ..++ +.+.++.+++           .      .|+|||+|||.++|.+-=.--|+|. +||=++|+|.- ||+--+   
T Consensus       259 PFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrr---  335 (480)
T TIGR01318       259 PFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRR---  335 (480)
T ss_pred             HHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH---
T ss_conf             47766152123788877744677766774234776689858887525788999981776131266536778787755---


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE------------------CCCCCCCEEEEEEECCCCEEEECCC
Q ss_conf             2222222222222322002344201468721699972------------------1332110000023204531210367
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST------------------DDEPINIEADAVLVAAGRRPYTKGL  280 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~------------------~g~~~~i~~D~vl~a~G~~Pn~~~l  280 (466)
                       ++.+ -+++||+|.+|.++.+|+.++++...-++..                  .|.+..+++|.||+|-|+.|.... 
T Consensus       336 -EV~N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p-  412 (480)
T TIGR01318       336 -EVAN-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP-  412 (480)
T ss_pred             -HHCC-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC-
T ss_conf             -5266-1111711321003158887788852335652356678677768777104786515146558971067898864-


Q ss_pred             CCEEEECCCCCCCCCCCC-------CCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             840000126764223337-------76333026848702433354344300012320120111
Q gi|254781053|r  281 GLEEIGINIDHRGCIEIG-------GQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       281 ~Le~~gi~~~~~G~I~vd-------~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      .|++-||++|++|.|.++       ..+||++|.|||-||+..+--|.-+|+.+||-||+-|.
T Consensus       413 WL~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~  475 (480)
T TIGR01318       413 WLAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGIL  475 (480)
T ss_pred             HHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf             445177556346327751345567765335688475167701467220006676689999999


No 66 
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93  E-value=4.7e-26  Score=208.18  Aligned_cols=289  Identities=25%  Similarity=0.337  Sum_probs=182.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      |||+|+||||||-+||+++++.|.+.-++-  +.|||+-+..-.                   -.+| +  ..+.-.-++
T Consensus       212 yDVLvVGgGPAgaaAAIYaARKGiRTGl~a--erfGGQvldT~~-------------------IENf-I--sv~~teGpk  267 (520)
T COG3634         212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMG-------------------IENF-I--SVPETEGPK  267 (520)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCHHHHHH--HHHCCEECCCCC-------------------HHHE-E--CCCCCCCHH
T ss_conf             349998688631678999986121110015--651882000003-------------------3330-0--565454668


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCC-CE
Q ss_conf             999999999987777787640043101100111002221023575211232210000467665244--457665321-00
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSIDFD-EQ  159 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~~~~-~~  159 (466)
                      +.......+++..-++-..-+.  +.+.. .+  ....-++|+..++. .++++.+|+|||+|.+.  +||...-.. +.
T Consensus       268 l~~ale~Hv~~Y~vDimn~qra--~~l~~-a~--~~~~l~ev~l~nGa-vLkaktvIlstGArWRn~nvPGE~e~rnKGV  341 (520)
T COG3634         268 LAAALEAHVKQYDVDVMNLQRA--SKLEP-AA--VEGGLIEVELANGA-VLKARTVILATGARWRNMNVPGEDEYRNKGV  341 (520)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHH--HCCEE-CC--CCCCCEEEEECCCC-EECCCEEEEECCCCHHCCCCCCHHHHHHCCE
T ss_conf             9999999876468245533434--20201-57--88860799954783-5113169984276420089985688731782


Q ss_pred             EEE-EECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHH
Q ss_conf             245-30574111111333210123445433201322012201110000111221222211222222222-2222322002
Q gi|254781053|r  160 VIV-SSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQLNSK  237 (466)
Q Consensus       160 ~~~-t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~~~~  237 (466)
                      .++ .+|.-+ +  ..|+++|||||..|+|.|--|+..-..|||++-.+.+-      .-+.+++.|+. .+|++.+|+.
T Consensus       342 ayCPHCDGPL-F--~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ii~na~  412 (520)
T COG3634         342 AYCPHCDGPL-F--KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTIITNAQ  412 (520)
T ss_pred             EECCCCCCCC-C--CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH------HHHHHHHHHHCCCCCEEEECCE
T ss_conf             6688899865-1--79647998888612888876775555131121060321------5789999973279848982231


Q ss_pred             HHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCC
Q ss_conf             34420146872-1699972-133211000002320453121036784000012676422333776333026848702433
Q gi|254781053|r  238 VSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVV  315 (466)
Q Consensus       238 v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~  315 (466)
                      -+++..+.+++ .+.+++. .++...++-+-|++-+|..|||+.  |+.. ++++++|-|.||.+..||+|+|||+|||+
T Consensus       413 Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-Vel~~rGEIivD~~g~T~vpGvFAAGD~T  489 (520)
T COG3634         413 TTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVFAAGDCT  489 (520)
T ss_pred             EEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHH--HHCH-HHCCCCCCEEEECCCCCCCCCEEECCCCC
T ss_conf             46876477501132778536785467874015899703468167--6151-11176764788557876787235337535


Q ss_pred             CCCC-CCCEECCCCCCEEE
Q ss_conf             3543-44300012320120
Q gi|254781053|r  316 RGPM-LAHKAEDEGIAVAE  333 (466)
Q Consensus       316 g~~~-l~~~A~~~g~~aa~  333 (466)
                      ..|. .--.|+-+|.-|+-
T Consensus       490 ~~~yKQIIIamG~GA~AaL  508 (520)
T COG3634         490 TVPYKQIIIAMGEGAKASL  508 (520)
T ss_pred             CCCCCEEEEEECCCCHHHH
T ss_conf             7741048998267513333


No 67 
>KOG2495 consensus
Probab=99.91  E-value=6e-26  Score=207.42  Aligned_cols=285  Identities=22%  Similarity=0.344  Sum_probs=190.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -|||+|+|=+|.+....+-.--.+|++|.+...+==|-+    .||-                       ....++++-+
T Consensus        57 ~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----LpS~-----------------------~vGTve~rSI  109 (491)
T KOG2495          57 RVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----LPST-----------------------TVGTVELRSI  109 (491)
T ss_pred             EEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEEC----CCCC-----------------------CCCCEEEHHH
T ss_conf             399985752889998752664342499646300687314----6776-----------------------4462431034


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC--CCCCCCCC-----CCCCCCCCEEECCCCCCCCC--CCCCCCC
Q ss_conf             999999999877777876400431011001110022--21023575-----21123221000046766524--4457665
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSN--NKILVKGS-----SSEETIEAKNIVIATGSEAS--GLPGMSI  154 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~--~~v~V~~~-----~~~~~i~ad~iviATGs~p~--~iP~~~~  154 (466)
                      .+-...+..         -+..++.++...+.-+|+  ++|.++..     ..+-.+.||++|+|+|+.+.  .+||...
T Consensus       110 vEPIr~i~r---------~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e  180 (491)
T KOG2495         110 VEPIRAIAR---------KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEE  180 (491)
T ss_pred             HHHHHHHHH---------CCCCCCEEEECCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHH
T ss_conf             556898862---------25787169862607606666679876412688861266026689996267777789975110


Q ss_pred             CCCCEEEE-EECCCCCC----------CCCC----------CCCCCCCCCCCCCCCCHHHHHC--------------CCC
Q ss_conf             32100245-30574111----------1113----------3321012344543320132201--------------220
Q gi|254781053|r  155 DFDEQVIV-SSTGALSF----------SSVP----------KNLLVIGAGVIGLELGSVWTRL--------------GSC  199 (466)
Q Consensus       155 ~~~~~~~~-t~~~~~~l----------~~~P----------~~ivIIGgG~ig~E~A~~~~~l--------------G~~  199 (466)
                         +.+++ -..++.+.          .++|          -+.+|||||++|+|||..++.+              -.+
T Consensus       181 ---~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~  257 (491)
T KOG2495         181 ---NAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIK  257 (491)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHEE
T ss_conf             ---10466643679999999998888752589985775405789998888762245677787787889986041320348


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE--E
Q ss_conf             11100001112212222112222222222222322002344201468721699972133211000002320453121--0
Q gi|254781053|r  200 VKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY--T  277 (466)
Q Consensus       200 Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn--~  277 (466)
                      |||++..|.+|+.||..+.+++++.+.+.||++.+++.|..++..+    ++...++|+..++++-.++|++|..|.  +
T Consensus       258 vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~~~~iPYG~lVWatG~~~rp~~  333 (491)
T KOG2495         258 VTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGEIEEIPYGLLVWATGNGPRPVI  333 (491)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE----EEEECCCCCEEEECCEEEEECCCCCCCHHH
T ss_conf             9842101457788899999999998643160343360799606718----999727883553032479954788776024


Q ss_pred             CCCCCEEEECCCCCCC--CCCCCCCCEE-ECCCCEEECCCC---CCCCCCCEECCCCCCEEECCC
Q ss_conf             3678400001267642--2333776333-026848702433---354344300012320120111
Q gi|254781053|r  278 KGLGLEEIGINIDHRG--CIEIGGQFQT-SISTIYAIGDVV---RGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       278 ~~l~Le~~gi~~~~~G--~I~vd~~~~T-s~p~IyA~GDv~---g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ..|. +    .+++.|  .+.||++||. +.+||||+|||+   +.++++.+|.+||..+|+++.
T Consensus       334 k~lm-~----~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495         334 KDLM-K----QIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             HHHH-H----CCCCCCCEEEEEECEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6675-2----4886673245520124406767627721322465676077898888899999999


No 68 
>KOG0404 consensus
Probab=99.89  E-value=3.6e-24  Score=194.44  Aligned_cols=281  Identities=22%  Similarity=0.265  Sum_probs=178.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             19999898668999999998799399993799----71502513667370989999999999998667558164775328
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK----TYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~----~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      .|+|||+|||+++||+++++..+|.+|+|..-    ..||+-.-           ..    . ...++.|  .   ..+.
T Consensus        10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-----------TT----~-veNfPGF--P---dgi~   68 (322)
T KOG0404          10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-----------TT----D-VENFPGF--P---DGIT   68 (322)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEE-----------EE----C-CCCCCCC--C---CCCC
T ss_conf             38998358067778999765026756881111168688863456-----------52----0-1348999--7---5456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE---EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCC
Q ss_conf             99999999999998777778764004310110011---1002221023575211232210000467665244--457665
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA---RIVSNNKILVKGSSSEETIEAKNIVIATGSEASG--LPGMSI  154 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a---~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~--iP~~~~  154 (466)
                      -+.++++.++..++           -|.+++....   ++. .+-+.+.++  .+.+++|.+|+|||+..++  +|+...
T Consensus        69 G~~l~d~mrkqs~r-----------~Gt~i~tEtVskv~~s-skpF~l~td--~~~v~~~avI~atGAsAkRl~~pg~ge  134 (322)
T KOG0404          69 GPELMDKMRKQSER-----------FGTEIITETVSKVDLS-SKPFKLWTD--ARPVTADAVILATGASAKRLHLPGEGE  134 (322)
T ss_pred             CHHHHHHHHHHHHH-----------HCCEEEEEEHHHCCCC-CCCEEEEEC--CCCEEEEEEEEECCCCEEEEECCCCCC
T ss_conf             68899999988875-----------1646541002222236-897698843--772453069992163012465478775


Q ss_pred             -CCCCEEEE---EECCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             -32100245---3057411-11113332101234454332013220122011100001112212222112222-222222
Q gi|254781053|r  155 -DFDEQVIV---SSTGALS-FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCL-KIMSKQ  228 (466)
Q Consensus       155 -~~~~~~~~---t~~~~~~-l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~-~~l~~~  228 (466)
                       .+.++.+-   -+|.+-- ++  .|-++|||||..++|-|.+|.+++++|.++.|+|++-.      +..++ +.+++.
T Consensus       135 ~~fWqrGiSaCAVCDGaapifr--nk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~np  206 (322)
T KOG0404         135 GEFWQRGISACAVCDGAAPIFR--NKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNP  206 (322)
T ss_pred             CHHHHCCCCHHHCCCCCCHHHC--CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEHHHHHH------HHHHHHHHHCCC
T ss_conf             2577636405312367652115--87459985867887899988741437999997124467------789999875399


Q ss_pred             CCCCCCCHHHHHHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCC-CCCEEEC
Q ss_conf             22232200234420146872-1699972-1332110000023204531210367840000126764223337-7633302
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI  305 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~  305 (466)
                      +|++++|+.+.+...+.+.. .+.+++. .++...++.+-+++++|..|||+.  |+. ++++|++|+|.+- ....||+
T Consensus       207 nI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~--l~g-qve~d~~GYi~t~pgts~Tsv  283 (322)
T KOG0404         207 NIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKF--LKG-QVELDEDGYIVTRPGTSLTSV  283 (322)
T ss_pred             CEEEEECHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHH--HCC-CEEECCCCEEEECCCCCCCCC
T ss_conf             76999311220020671402436987414475013202406997157826667--427-342136750896268644556


Q ss_pred             CCCEEECCCCCC-CCCCCEECCCCCC
Q ss_conf             684870243335-4344300012320
Q gi|254781053|r  306 STIYAIGDVVRG-PMLAHKAEDEGIA  330 (466)
Q Consensus       306 p~IyA~GDv~g~-~~l~~~A~~~g~~  330 (466)
                      |++||+|||... +..+-.|...|.+
T Consensus       284 pG~FAAGDVqD~kyRQAvTaAgsGci  309 (322)
T KOG0404         284 PGVFAAGDVQDKKYRQAVTAAGSGCI  309 (322)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCHH
T ss_conf             52453164312788998866335346


No 69 
>KOG1346 consensus
Probab=99.87  E-value=2.2e-22  Score=181.45  Aligned_cols=404  Identities=21%  Similarity=0.266  Sum_probs=229.7

Q ss_pred             EEEECCCHHHHHHH--HHHHHCCCCEEEEECCCCCCEEEEEECCCC-HHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             99998986689999--999987993999937997150251366737-098999999999999866755816477532899
Q gi|254781053|r    5 VAVVGGGPAGYACA--IKAAQLKNKVAIIEKEKTYGGTCLNIGCIP-SKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         5 vvIIG~G~AG~~aA--~~~~~~G~~V~lIE~~~~~GGtC~~~GCiP-sK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      -+|||+|.|-.+++  +...+.+.+|.+|-.++.+-   -++  =| ||-||....--  ..+....-.|+..+.++-|.
T Consensus       181 ~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmR--PPLSKELW~~~dpn--~~k~lrfkqwsGkeRsiffe  253 (659)
T KOG1346         181 YLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMR--PPLSKELWWYGDPN--SAKKLRFKQWSGKERSIFFE  253 (659)
T ss_pred             EEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCC---CCC--CCCCHHCEECCCCC--HHHHEEECCCCCCCCEEEEC
T ss_conf             567737734432045665678873588603676776---568--97442113569997--15404301047864315755


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHCCCEEEEEEEEE-ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-
Q ss_conf             999999999-9987777787640043101100111-0022210235752112322100004676652444576653210-
Q gi|254781053|r   82 KMMSYKKSI-VESNTQGINFLLKKNKIITYHGSAR-IVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE-  158 (466)
Q Consensus        82 ~~~~~~~~~-v~~~~~~~~~~~~~~~V~~~~g~a~-~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~-  158 (466)
                      .     +.+ +.  .+++. .....||.++.|.-. =++...-.|..+++ .+|.||+++||||.+|+.++.++..... 
T Consensus       254 p-----d~Ffvs--peDLp-~~~nGGvAvl~G~kvvkid~~d~~V~LnDG-~~I~YdkcLIATG~~Pk~l~~~~~A~~ev  324 (659)
T KOG1346         254 P-----DGFFVS--PEDLP-KAVNGGVAVLRGRKVVKIDEEDKKVILNDG-TTIGYDKCLIATGVRPKKLQVFEEASEEV  324 (659)
T ss_pred             C-----CCCEEC--HHHCC-CCCCCCEEEEECCCEEEEECCCCEEEECCC-CEEEHHHEEEECCCCCCCCHHHHHCCHHH
T ss_conf             8-----850448--57774-002685689734504786100076882278-57212104653277766415656438876


Q ss_pred             ----EEEEEECCCCCCCCC---CCCCCCCCCCCCCCCCCHHHHH----CCCCHHHHH----HCCCCCCCCCCCCCCCCCC
Q ss_conf             ----024530574111111---3332101234454332013220----122011100----0011122122221122222
Q gi|254781053|r  159 ----QVIVSSTGALSFSSV---PKNLLVIGAGVIGLELGSVWTR----LGSCVKIIE----HSGTILNGMDKEIAAHCLK  223 (466)
Q Consensus       159 ----~~~~t~~~~~~l~~~---P~~ivIIGgG~ig~E~A~~~~~----lG~~Vtli~----~~~~ll~~~d~~~~~~~~~  223 (466)
                          .++.+..|+-.+++.   .+++.|||+|++|.|+|+.+.+    .|.+|+.+-    .+..+||   +-+++...+
T Consensus       325 k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLP---eyls~wt~e  401 (659)
T KOG1346         325 KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILP---EYLSQWTIE  401 (659)
T ss_pred             HHHEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH---HHHHHHHHH
T ss_conf             62256674532788998765222258997575014567878877662068489984001287666517---888788899


Q ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC-CCCCCCCCCCE
Q ss_conf             22222222322002344201468721699972133211000002320453121036784000012676-42233377633
Q gi|254781053|r  224 IMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH-RGCIEIGGQFQ  302 (466)
Q Consensus       224 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~-~G~I~vd~~~~  302 (466)
                      .+++.||+++.|+.|.++........+  +..+|  .++..|.|++|+|-.||++.  .+..|+++|+ -|...||.-++
T Consensus       402 kir~~GV~V~pna~v~sv~~~~~nl~l--kL~dG--~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~  475 (659)
T KOG1346         402 KIRKGGVDVRPNAKVESVRKCCKNLVL--KLSDG--SELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELK  475 (659)
T ss_pred             HHHHCCCEECCCHHHHHHHHCCCCEEE--EECCC--CEEEECEEEEEECCCCCHHH--CCCCCCEECCCCCCEEEEHEEE
T ss_conf             998569412541024666520212689--92588--76451359998357886433--0456715500037677412000


Q ss_pred             EECCCCEEECCCC-------CCCCCCC--EECCCCCCEEECCCCCCCCCCCCC---------------------CCCC-E
Q ss_conf             3026848702433-------3543443--000123201201112222222333---------------------3221-0
Q gi|254781053|r  303 TSISTIYAIGDVV-------RGPMLAH--KAEDEGIAVAEIISGQKGHVNYGI---------------------IPSV-V  351 (466)
Q Consensus       303 Ts~p~IyA~GDv~-------g~~~l~~--~A~~~g~~aa~~i~~~~~~~~~~~---------------------ip~~-v  351 (466)
                      .- .|||++||++       |....-|  .|.-.||.|.+||.+...++.+..                     .|++ |
T Consensus       476 ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgV  554 (659)
T KOG1346         476 AR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGV  554 (659)
T ss_pred             CC-CCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCEE
T ss_conf             15-43365042445405311100003244324502002654444568764445025368863461122000367874145


Q ss_pred             EEHHHHHHHHHCHHHHHHC-CCCEEEEEEE----------ECCCCHHHHCCCCCEEEE-EEEECCCCEEEEEEEECCCHH
Q ss_conf             0014455100147888623-4665899996----------044703441889833899-999789986999999829988
Q gi|254781053|r  352 YTHPEVASIGKTEEQLKCE-KKSYKVGKFP----------FSANGRARSMNSIDGFVK-ILANEKSDRVEGVHIIGGSAG  419 (466)
Q Consensus       352 ft~peia~vGlte~~a~~~-~~~~~v~~~~----------~~~~~ra~~~~~~~g~~k-li~~~~~~~ilG~~~vg~~a~  419 (466)
                      |..|.-+   -...|+.++ +-++......          -+..+-.....+..-|-| +||-.++++|+|.-+..  .-
T Consensus       555 fA~p~s~---~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN--~F  629 (659)
T KOG1346         555 FALPSSA---TRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWN--LF  629 (659)
T ss_pred             EECCCCC---CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHH--HH
T ss_conf             5336534---460232221588886654543322234577678887668421245673489996289489998545--31


Q ss_pred             HHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999998789878996
Q gi|254781053|r  420 EMIHEAAVLMEFGGSSEDLA  439 (466)
Q Consensus       420 eli~~~a~ai~~~~t~~~l~  439 (466)
                      ..|.+.--.|+.+-..+||-
T Consensus       630 nr~~~AR~II~d~kk~ddln  649 (659)
T KOG1346         630 NRIGLARTIINDNKKYDDLN  649 (659)
T ss_pred             CCCHHHHHHHCCCCCHHHHH
T ss_conf             55306688750552125689


No 70 
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.86  E-value=1.9e-22  Score=181.90  Aligned_cols=282  Identities=27%  Similarity=0.332  Sum_probs=182.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .|.|||+||||++||..|++.|+.|+++|+.+..||. +.+| ||.-                          .++    
T Consensus       125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl-l~yG-IP~~--------------------------kl~----  172 (457)
T COG0493         125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL-LLYG-IPDF--------------------------KLP----  172 (457)
T ss_pred             EEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEE-EEEC-CCHH--------------------------HCC----
T ss_conf             7999888951555889998689879982666777447-9814-8446--------------------------464----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCEE
Q ss_conf             99999999987777787640043101100111002221023575211232210000467665-24--4457665321002
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-AS--GLPGMSIDFDEQV  160 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~--~iP~~~~~~~~~~  160 (466)
                          ++++++..    ..++..|+++..+..+  + ..+..    .+-.-++|.++++||+. |+  .+|+.+.  .+  
T Consensus       173 ----k~i~d~~i----~~l~~~Gv~~~~~~~v--G-~~it~----~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~g--  233 (457)
T COG0493         173 ----KDILDRRL----ELLERSGVEFKLNVRV--G-RDITL----EELLKEYDAVFLATGAGKPRPLDIPGEDA--KG--  233 (457)
T ss_pred             ----CHHHHHHH----HHHHHCCCEEEECCEE--C-CCCCH----HHHHHHHCEEEEECCCCCCCCCCCCCCCC--CC--
T ss_conf             ----20689999----9998749099986677--9-96789----99865328799932667887689888677--77--


Q ss_pred             EEEECCCC---------CC--CCCC----CCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCCC--CCCCCCCCCCCCC
Q ss_conf             45305741---------11--1113----332101234454332013220122-01110000111--2212222112222
Q gi|254781053|r  161 IVSSTGAL---------SF--SSVP----KNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGTI--LNGMDKEIAAHCL  222 (466)
Q Consensus       161 ~~t~~~~~---------~l--~~~P----~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~l--l~~~d~~~~~~~~  222 (466)
                      +....+++         ..  ...|    ++++|||+|.++++++....++|. +|+.+++.++=  ...+..-..+...
T Consensus       234 v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~  313 (457)
T COG0493         234 VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEV  313 (457)
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf             61687999999998603565446777789858998998888999888874175399992355665667854441067887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCEEE---EE--EE--------------CCCCCCCEEEEEEECCCCEEEECCCCCE
Q ss_conf             22222222232200234420146872169---99--72--------------1332110000023204531210367840
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVV---YR--ST--------------DDEPINIEADAVLVAAGRRPYTKGLGLE  283 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~---~~--~~--------------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le  283 (466)
                      +....+|+...+.....++...+++....   .+  ..              .+++..+++|.|+.|+|..|+-..+.+.
T Consensus       314 ~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~  393 (457)
T COG0493         314 RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLL  393 (457)
T ss_pred             HHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             76775477543156763586658980840112212446665553445773226855875456688666136675432110


Q ss_pred             EEECCCCCCCCCCCCCCC-EEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             000126764223337763-33026848702433354344300012320120111
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQF-QTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      ..++..+.+|.|.+|+.+ +||+|++||.||+..+..+.-.|+.+|+.+++.+.
T Consensus       394 ~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         394 EFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID  447 (457)
T ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf             012353767855103222124687636575442361341407640329998756


No 71 
>KOG0399 consensus
Probab=99.86  E-value=3.2e-21  Score=172.95  Aligned_cols=284  Identities=25%  Similarity=0.282  Sum_probs=169.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      +-|.|||+||||+.||-+|.+.|+.|++.|+.+..||. +.                         ||+.  +.++|-. 
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l~-------------------------ygip--nmkldk~- 1836 (2142)
T KOG0399        1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-LM-------------------------YGIP--NMKLDKF- 1836 (2142)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE-------------------------ECCC--CCCHHHH-
T ss_conf             47999746841466899986447679999715776745-66-------------------------1687--5213279-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEE
Q ss_conf             999999999987777787640043101100111002221023575211232210000467665-2444576653210024
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSE-ASGLPGMSIDFDEQVI  161 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~-p~~iP~~~~~~~~~~~  161 (466)
                      ++++       +.    .++...||+++... . ++ +++..  +.  -.-+.|.+|+|+||. |+++|....+..+..+
T Consensus      1837 vv~r-------rv----~ll~~egi~f~tn~-e-ig-k~vs~--d~--l~~~~daiv~a~gst~prdlpv~grd~kgv~f 1898 (2142)
T KOG0399        1837 VVQR-------RV----DLLEQEGIRFVTNT-E-IG-KHVSL--DE--LKKENDAIVLATGSTTPRDLPVPGRDLKGVHF 1898 (2142)
T ss_pred             HHHH-------HH----HHHHHHCCEEEEEC-C-CC-CCCCH--HH--HHHCCCEEEEEECCCCCCCCCCCCCCCCCCHH
T ss_conf             9999-------99----99886185488503-2-25-65567--88--75305759998278877678889853343087


Q ss_pred             ------------EEEC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCC--CCC-----------
Q ss_conf             ------------5305-7411111133321012344543320132201220-111000011122--122-----------
Q gi|254781053|r  162 ------------VSST-GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILN--GMD-----------  214 (466)
Q Consensus       162 ------------~t~~-~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~--~~d-----------  214 (466)
                                  .+++ +...+....|+++|||||.+|-.+-..-.|.|++ |--++--|++-+  ..|           
T Consensus      1899 ame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfr 1978 (2142)
T KOG0399        1899 AMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFR 1978 (2142)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCHHHCCCEECCEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999875776504434453214679769998788766543142022032301022535889866688998866855788


Q ss_pred             -----CCCC----------CCCCCCCCCCCCCCCCCHHHHHH--HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             -----2211----------22222222222223220023442--014687216999721332110000023204531210
Q gi|254781053|r  215 -----KEIA----------AHCLKIMSKQGMNFQLNSKVSSV--KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       215 -----~~~~----------~~~~~~l~~~gV~i~~~~~v~~i--~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                           .+..          ..+.+.+....-...++-+..++  ++++.+.+ .+...++.++.+++|.+++|.|+..--
T Consensus      1979 vdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w-~~~ei~~see~~eadlv~lamgf~gpe 2057 (2142)
T KOG0399        1979 VDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRW-QMKEINNSEEIIEADLVILAMGFVGPE 2057 (2142)
T ss_pred             EECCHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCE-EEEECCCCCEEEECCEEEEECCCCCCC
T ss_conf             5055588998708996103645401321688746447899888876687736-898727851034424524320256841


Q ss_pred             CCCCCEEEECCCCCCCCCCC-CCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             36784000012676422333-77633302684870243335434430001232012011
Q gi|254781053|r  278 KGLGLEEIGINIDHRGCIEI-GGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       278 ~~l~Le~~gi~~~~~G~I~v-d~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      .. ..+..+++.|+++.|.+ ++.+.|++++|||+|||-.+..|..+|+++||-+|+.+
T Consensus      2058 ~~-~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399        2058 KS-VIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred             HH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf             33-35332755476545367776533345524640554678657999803326889999


No 72 
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.73  E-value=1.2e-17  Score=146.89  Aligned_cols=284  Identities=20%  Similarity=0.239  Sum_probs=173.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
Q ss_conf             31999989866899999999879939999379971502513667370989999999999998667558164775328999
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKK   82 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~   82 (466)
                      =||+|||+|||||+||+.|++.|+||+|+|.+..+||.           |++.                  .+..+|-+.
T Consensus       177 CDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGs-----------L~~~------------------~g~~IDG~P  227 (1026)
T TIGR01372       177 CDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGS-----------LLSE------------------AGETIDGKP  227 (1026)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCCC------------------CCCCCCCCC
T ss_conf             04788788967999999996479889997067657775-----------5677------------------876017801


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE---EEECCCCCCC-----------CC-CCCCCC--CCCCEEECCCCCCC
Q ss_conf             9999999999877777876400431011001---1100222102-----------35-752112--32210000467665
Q gi|254781053|r   83 MMSYKKSIVESNTQGINFLLKKNKIITYHGS---ARIVSNNKIL-----------VK-GSSSEE--TIEAKNIVIATGSE  145 (466)
Q Consensus        83 ~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~---a~~~~~~~v~-----------V~-~~~~~~--~i~ad~iviATGs~  145 (466)
                      ..+|..+-+..+...-       .|.++.=+   |.. |.|.+.           +. +...++  +|+|+++|||||+-
T Consensus       228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~Y-D~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~  299 (1026)
T TIGR01372       228 AADWAAATVAELEALP-------EVTLLPRTTAFGYY-DHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGAL  299 (1026)
T ss_pred             HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEE-CCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCC
T ss_conf             8999999999974189-------81674354055451-477478762011366778874853305777253456605764


Q ss_pred             --C-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCCCCCCCCCC
Q ss_conf             --2-----44457665321002453057411111133321012344543320132201220-111000011122122221
Q gi|254781053|r  146 --A-----SGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTILNGMDKEI  217 (466)
Q Consensus       146 --p-----~~iP~~~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~ll~~~d~~~  217 (466)
                        |     +++||+.....-..|+.--.    -...||++|.=.-..|.+.|--|.+.|.. |.||+.++.+-|      
T Consensus       300 ERPlVF~nND~PGvMlA~A~~~YlnRyg----V~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p------  369 (1026)
T TIGR01372       300 ERPLVFANNDRPGVMLAGAARTYLNRYG----VAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSP------  369 (1026)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCH------
T ss_conf             4778688319532333679999888750----054870589821735899999999648950699961788752------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEE-------ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf             1222222222222232200234420146-872169997-------21332110000023204531210367840000126
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRS-------TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI  289 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~-------~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~  289 (466)
                        .+.+.-.+.|++++++..|...+... ....+.+..       ..|.++.++||.++++-|..|.+-...-..-.++.
T Consensus       370 --~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W  447 (1026)
T TIGR01372       370 --ELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAW  447 (1026)
T ss_pred             --HHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCC
T ss_conf             --479999875985986450221257721010468886244001135785247853898727766212220005883430


Q ss_pred             CCC--CCCCCCCCCEEECCCCEEECCCCCCCCCCC---EECCCCCCEEECC
Q ss_conf             764--223337763330268487024333543443---0001232012011
Q gi|254781053|r  290 DHR--GCIEIGGQFQTSISTIYAIGDVVRGPMLAH---KAEDEGIAVAEII  335 (466)
Q Consensus       290 ~~~--G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~---~A~~~g~~aa~~i  335 (466)
                      ++.  -|+.=++..+=..+++-.+|=++|---|+.   -+...|..+|.+.
T Consensus       448 ~~~~~AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~  498 (1026)
T TIGR01372       448 DEARAAFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA  498 (1026)
T ss_pred             CHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             133431586675544366772785300010107999999999999999861


No 73 
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=99.73  E-value=1.2e-17  Score=147.07  Aligned_cols=311  Identities=17%  Similarity=0.211  Sum_probs=165.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE-------CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC-
Q ss_conf             9999898668999999998799399993799715025136-------67370989999999999998667558164775-
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI-------GCIPSKALLHASEMYSHIAKEAGDLGINIASC-   76 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~-------GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~-   76 (466)
                      |+|||||++|+.+|..|.+.|.+++++|+++.+||+--..       .++-.-+..+.++.    ...+.+|.+....+ 
T Consensus         4 VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Ntsk~----~~~fSDfP~P~~~p~   79 (532)
T pfam00743         4 VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSKE----MSCFSDFPFPEDYPN   79 (532)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCH----HHCCCCCCCCCCCCC
T ss_conf             9998972999999999987799829997799973506688887888676489706858900----513899989987889


Q ss_pred             CCCHHHHHHHHHHHHHHHHH--HHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCC--CCC---
Q ss_conf             32899999999999998777--7787640043101100111002--22102357521123221000046766--524---
Q gi|254781053|r   77 HLDLKKMMSYKKSIVESNTQ--GINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGS--EAS---  147 (466)
Q Consensus        77 ~~d~~~~~~~~~~~v~~~~~--~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs--~p~---  147 (466)
                      ....++++++.+..++...-  .+++   +..|.-+.-...+..  ...|.+..++..++-.+|.+++|||-  .|+   
T Consensus        80 f~~~~~v~~YL~~YA~hF~L~~~Irf---~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~fD~ViVctG~~~~P~iP~  156 (532)
T pfam00743        80 FMHNSKFLEYLRMFAKHFDLLKYIQF---KTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNPHLPL  156 (532)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEC---CCEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             98989999999999998099673765---778999997667666861899998589088999779999466778687677


Q ss_pred             -CCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC-CCCCCCC-----C---
Q ss_conf             -4457665321002453057411111-133321012344543320132201220111000011-1221222-----2---
Q gi|254781053|r  148 -GLPGMSIDFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT-ILNGMDK-----E---  216 (466)
Q Consensus       148 -~iP~~~~~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~-ll~~~d~-----~---  216 (466)
                       .+||++ .+.++ ++.|.+.-+-+. ..|+++|||+|..|+++|..+++..++|++..|+.. ++++..+     +   
T Consensus       157 ~~~pG~e-~F~G~-iiHS~~Yk~~~~f~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~wv~pr~~~~G~P~D~~~  234 (532)
T pfam00743       157 ESFPGIN-KFKGQ-YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSRVSDWGYPWDMLL  234 (532)
T ss_pred             CCCCCHH-CCCCE-EEEHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             7789611-17967-987442798688599749997888984105999985278689997068532454555788378999


Q ss_pred             ---------------CCCCC---------------------------------CCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf             ---------------11222---------------------------------222222222232200234420146872
Q gi|254781053|r  217 ---------------IAAHC---------------------------------LKIMSKQGMNFQLNSKVSSVKKVKGKA  248 (466)
Q Consensus       217 ---------------~~~~~---------------------------------~~~l~~~gV~i~~~~~v~~i~~~~~~~  248 (466)
                                     +.+.+                                 ...+....|.+..  .+.+++    +.
T Consensus       235 ~~r~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~ygl~P~~~~~~~~p~i~d~l~~~I~~G~I~vkp--~I~~f~----~~  308 (532)
T pfam00743       235 TTRFCSFLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKLAKEPIVNDELPNRILCGAVKVKP--SVKEFT----ET  308 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECC--CEEEEE----CC
T ss_conf             888999999871699999999999875158212588777776556640276777574258449837--915997----99


Q ss_pred             EEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE-----ECCCCEEECCCCCCCCCCCE
Q ss_conf             1699972133211000002320453121036784000012676422333776333-----02684870243335434430
Q gi|254781053|r  249 QVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT-----SISTIYAIGDVVRGPMLAHK  323 (466)
Q Consensus       249 ~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~~~l~~~  323 (466)
                      .+.+.  ||. ..-+.|.|++|||.+.....  |++.=+...+ +.+  .=|.++     ..|++.-+|=+-..-.+.+.
T Consensus       309 ~V~F~--DGt-~~e~iD~VI~aTGY~~~fPF--L~~~~~~~~~-~~~--~LYk~vfpp~l~~PtLAfIG~v~~~g~~~p~  380 (532)
T pfam00743       309 SAIFE--DGT-VEEDIDVVIFATGYTFSFPF--LEESLVKVET-NKI--SLYKYVFPPNLEKPTLAIIGLIQPLGSIIPT  380 (532)
T ss_pred             EEEEC--CCC-CCCCCCEEEECCCCCCCCCC--CCCCCCCCCC-CCE--EEEEEECCCCCCCCCEEEEEECCCCCCCCCH
T ss_conf             89989--998-94369989989998988888--7755678788-840--0143533787789867999853534677526


Q ss_pred             ECCCCCCEEECCCCC
Q ss_conf             001232012011122
Q gi|254781053|r  324 AEDEGIAVAEIISGQ  338 (466)
Q Consensus       324 A~~~g~~aa~~i~~~  338 (466)
                      +.+|++.+++.+.|.
T Consensus       381 ~ElQArw~a~v~~G~  395 (532)
T pfam00743       381 VELQARWAVRVFKGL  395 (532)
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999997078


No 74 
>KOG2755 consensus
Probab=99.72  E-value=9.9e-18  Score=147.57  Aligned_cols=262  Identities=20%  Similarity=0.288  Sum_probs=149.6

Q ss_pred             EEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC---C
Q ss_conf             99998986689999999987--993999937997150251366737098999999999999866755816477532---8
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL---D   79 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~---d   79 (466)
                      .+|+|||.||.+||.+++.+  ..+++||-..+                ++.+-.-+..+.+....|.++.++.+-   |
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass----------------~vksvtn~~~i~~ylekfdv~eq~~~elg~~   65 (334)
T KOG2755           2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS----------------FVKSVTNYQKIGQYLEKFDVKEQNCHELGPD   65 (334)
T ss_pred             EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCH----------------HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf             599857614325899997538887389996417----------------8887761799998887627523416665500


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999998777778764004310110011100222102357521123221000046766524445766532100
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQ  159 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~~  159 (466)
                      +++++..           +..+ ..             ..|.+  .+..+ +.+.|++++++||++|...-.. .+..-.
T Consensus        66 f~~~~~~-----------v~~~-~s-------------~ehci--~t~~g-~~~ky~klcl~tg~kPklq~E~-~n~~Iv  116 (334)
T KOG2755          66 FRRFLND-----------VVTW-DS-------------SEHCI--HTQNG-EKLKYFKLCLCTGYKPKLQVEG-INPKIV  116 (334)
T ss_pred             HHHHHHH-----------HHHH-CC-------------CCCEE--EECCC-CEEEEEEEEEECCCCCCEEECC-CCCEEE
T ss_conf             7899876-----------6321-45-------------34458--82278-6666889999538873013247-785599


Q ss_pred             EEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCCCC-------
Q ss_conf             2453057411111---1333210123445433201322012201110000111221-2222112222222222-------
Q gi|254781053|r  160 VIVSSTGALSFSS---VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG-MDKEIAAHCLKIMSKQ-------  228 (466)
Q Consensus       160 ~~~t~~~~~~l~~---~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~-------  228 (466)
                      .+-+.|.+..++.   ..|.+.|+|.|-|++|++.-+.  +.+||.....+.+-.. |||.+++.+...|...       
T Consensus       117 ~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~ia  194 (334)
T KOG2755         117 GIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIA  194 (334)
T ss_pred             EEECCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHH--CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf             98437178999998762436999805723588888741--2304899625000010248248888676631356640224


Q ss_pred             -----------------------------------------CCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEE
Q ss_conf             -----------------------------------------222322002344201468721699972-13321100000
Q gi|254781053|r  229 -----------------------------------------GMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADA  266 (466)
Q Consensus       229 -----------------------------------------gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~  266 (466)
                                                               ......++.+. +....+...++..+. .+....+.+|.
T Consensus       195 iKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~-~~d~~d~~sv~~~~~ek~~~~qlt~d~  273 (334)
T KOG2755         195 IKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVIT-STDTSDNLSVHYMDKEKMADNQLTCDF  273 (334)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEEE-ECCCHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf             4553443424720105765445851543103012314553220775532123-104401013100310036664363547


Q ss_pred             EEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEECCCCEEECCCCC
Q ss_conf             23204531210367840000126764223337763330268487024333
Q gi|254781053|r  267 VLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTSISTIYAIGDVVR  316 (466)
Q Consensus       267 vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g  316 (466)
                      +++|+|..||++ . +-.-.++..+.|.|.||+.|+||.|++||+||++.
T Consensus       274 ivSatgvtpn~e-~-~~~~~lq~~edggikvdd~m~tslpdvFa~gDvct  321 (334)
T KOG2755         274 IVSATGVTPNSE-W-AMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT  321 (334)
T ss_pred             EEECCCCCCCCE-E-EECCHHHHCCCCCEEEHHHCCCCCCCEEEECCEEC
T ss_conf             996134576743-8-96270342024580411105555653034122403


No 75 
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.64  E-value=1.8e-16  Score=138.38  Aligned_cols=321  Identities=20%  Similarity=0.263  Sum_probs=156.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC-CCHH---------HHHHHHH-----HH--H---HHH
Q ss_conf             1999989866899999999879939999379971502513667-3709---------8999999-----99--9---999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC-IPSK---------ALLHASE-----MY--S---HIA   63 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC-iPsK---------~l~~~a~-----~~--~---~~~   63 (466)
                      +++|||||+||++||+.|++.|.+|.|+||++.+||.=....- .|..         .|...++     ++  .   .+.
T Consensus       126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~  205 (622)
T COG1148         126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEVS  205 (622)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCHHHCCCHHHHHCCCCCEEEEEEEEEEEEC
T ss_conf             35998684898999999997598089994178645047765230787553232133023331258861465422465303


Q ss_pred             HHHHHCCEECCC-C-CCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE----EE-EE
Q ss_conf             866755816477-5-328--------------------999999999999987777787640043101100----11-10
Q gi|254781053|r   64 KEAGDLGINIAS-C-HLD--------------------LKKMMSYKKSIVESNTQGINFLLKKNKIITYHG----SA-RI  116 (466)
Q Consensus        64 ~~~~~~g~~~~~-~-~~d--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g----~a-~~  116 (466)
                      -..++|-++... + .+|                    |..-+..++.+...+.+   .......|+..+.    .. .-
T Consensus       206 G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~q---aVp~~~~Id~~~c~~c~~C~~a  282 (622)
T COG1148         206 GSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQ---AVPLNYNIDPKHCIECGLCEKA  282 (622)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHH---HCCCCCCCCHHHHCCCHHHHHC
T ss_conf             5435347887306520011265532222347765675101254532356425645---5254532171650210356643


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCEEEEEECCCCC----------------CCCCCCCCC
Q ss_conf             022210235752112322100004676652444576653--21002453057411----------------111133321
Q gi|254781053|r  117 VSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSID--FDEQVIVSSTGALS----------------FSSVPKNLL  178 (466)
Q Consensus       117 ~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~--~~~~~~~t~~~~~~----------------l~~~P~~iv  178 (466)
                      .++..+..+.....-+++...+|+|||-.+.+......-  +....++|+-++-.                --+.||+++
T Consensus       283 c~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~PkrVa  362 (622)
T COG1148         283 CPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVA  362 (622)
T ss_pred             CCCCCCCCCCCCCEEEEEECEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEE
T ss_conf             99300013788717999715299972465557100433388877444447899987355799886177137999874689


Q ss_pred             CC---CCCC--CCCCCC----HHH--------HHC--CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             01---2344--543320----132--------201--2201110000111221222211222222222222232200234
Q gi|254781053|r  179 VI---GAGV--IGLELG----SVW--------TRL--GSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       179 II---GgG~--ig~E~A----~~~--------~~l--G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      +|   |+-.  .+..+-    +++        .+.  ..+||+++..=|-.+.+   .-+...+.-++.||++..+ ++.
T Consensus       363 FIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Iker~Pd~~v~I~YmDiRafG~~---yEefY~~~Q~~~GV~fIRG-rva  438 (622)
T COG1148         363 FIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKD---YEEFYVRSQEDYGVRFIRG-RVA  438 (622)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC---HHHHHHHHHHHHCCEEECC-CEE
T ss_conf             999614656666882244899999987789988758985389999971246642---6999998788608536646-410


Q ss_pred             HHHCCCCCC-EEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCC-EEEECCCCCCCCCCCC-CCC---EEECCCCEEEC
Q ss_conf             420146872-1699972-133211000002320453121036784-0000126764223337-763---33026848702
Q gi|254781053|r  240 SVKKVKGKA-QVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGL-EEIGINIDHRGCIEIG-GQF---QTSISTIYAIG  312 (466)
Q Consensus       240 ~i~~~~~~~-~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~L-e~~gi~~~~~G~I~vd-~~~---~Ts~p~IyA~G  312 (466)
                      +|....++. .|...++ .++..++++|+|++++|..|.-..-.+ ..+|++.++.||+.-. +.+   +|+.+|||.+|
T Consensus       439 eI~e~p~~~liV~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG  518 (622)
T COG1148         439 EIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAG  518 (622)
T ss_pred             EEEECCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             16887998369998603467311123337999504445765688887548651787760347877664555678579810


Q ss_pred             CCCCCCCCCCEECCCCCCEE
Q ss_conf             43335434430001232012
Q gi|254781053|r  313 DVVRGPMLAHKAEDEGIAVA  332 (466)
Q Consensus       313 Dv~g~~~l~~~A~~~g~~aa  332 (466)
                      -+.|+.... .+..||..||
T Consensus       519 ~aqgPkdI~-~siaqa~aAA  537 (622)
T COG1148         519 AAQGPKDIA-DSIAQAKAAA  537 (622)
T ss_pred             CCCCCCCHH-HHHHHHHHHH
T ss_conf             036984277-8887767889


No 76 
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.62  E-value=6.7e-16  Score=134.24  Aligned_cols=195  Identities=23%  Similarity=0.291  Sum_probs=107.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
Q ss_conf             33199998986689999999987993-99993799715025136673709899999999999986675581647753289
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNK-VAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDL   80 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~-V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~   80 (466)
                      ++||+|||||++|+.+|..|+++|.. ++++||...+||+ .|+-+-|+-.+......+     .+..+.+.....--++
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~-W~~~ry~~l~~~~p~~~~-----~~~~~p~~~~~~~~~~   81 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-WRYNRYPGLRLDSPKWLL-----GFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCCCCCEEEECCCCCCC-----CCCCCCCCCCCCCCCC
T ss_conf             5548998987889999999997599867999705766786-555668716767974011-----5888887765567776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC-CCCCCCCCCCCC-CCCEEECCCCCC--CCC--CCCCCCC
Q ss_conf             9999999999998777778764004310110011100222-102357521123-221000046766--524--4457665
Q gi|254781053|r   81 KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN-KILVKGSSSEET-IEAKNIVIATGS--EAS--GLPGMSI  154 (466)
Q Consensus        81 ~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~-~v~V~~~~~~~~-i~ad~iviATGs--~p~--~iP~~~~  154 (466)
                      ..+..+.....+......+ +.-..+|+.    +.+.+.. .-.|..+.+.+. +++|+||+|||-  .|.  .+||.+ 
T Consensus        82 ~~~~~y~~~~~~~y~~~~~-i~~~~~v~~----~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~-  155 (443)
T COG2072          82 AEIKDYIKDYLEKYGLRFQ-IRFNTRVEV----ADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLD-  155 (443)
T ss_pred             CCHHHHHHHHHHHHCCEEE-EECCCCEEE----EEEECCCCEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCCCCC-
T ss_conf             4389999999998356045-021452568----8630588706999648875225126799830578989788878866-


Q ss_pred             CCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC
Q ss_conf             321002453057411-1111333210123445433201322012201110000111
Q gi|254781053|r  155 DFDEQVIVSSTGALS-FSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI  209 (466)
Q Consensus       155 ~~~~~~~~t~~~~~~-l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l  209 (466)
                      .+.+. ++.|.+.-+ .+-..|+|+|||+|..|++++..+.+.|.+||+++|++..
T Consensus       156 ~f~g~-~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         156 EFKGR-ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CCCCC-EECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             66863-44410169613427887999898703999999997306717898517975


No 77 
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.47  E-value=3e-13  Score=114.91  Aligned_cols=321  Identities=19%  Similarity=0.278  Sum_probs=172.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC---EEEEEECCC---C-HHHHH---HHHHHH---HHHHHHHHH
Q ss_conf             31999989866899999999879-9399993799715---025136673---7-09899---999999---999986675
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYG---GTCLNIGCI---P-SKALL---HASEMY---SHIAKEAGD   68 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~G---GtC~~~GCi---P-sK~l~---~~a~~~---~~~~~~~~~   68 (466)
                      ||++.||-||+.++.|..+...+ ++...+|+.+.+-   |. +..||-   | -|-|.   .+.+.+   .++..+..-
T Consensus         6 ~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~RL   84 (436)
T COG3486           6 LDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHGRL   84 (436)
T ss_pred             EEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHH
T ss_conf             026887048327899987350257525787347888767875-5578644450056325535899830799999870657


Q ss_pred             CC-EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE---EEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             58-16477532899999999999998777778764004310---110011100222102357521123221000046766
Q gi|254781053|r   69 LG-INIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKII---TYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGS  144 (466)
Q Consensus        69 ~g-~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~---~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs  144 (466)
                      |. +..+...+.-.+.-.+-++..+.+ ...++   ...|+   .+.+.+.    -+..+.+.++ .+++++++||.+|.
T Consensus        85 y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf---g~~V~~i~~~~~d~~----~~~~~~t~~~-~~y~ar~lVlg~G~  155 (436)
T COG3486          85 YEFLNYETFHIPRREYNDYCQWAASQL-PSLRF---GEEVTDISSLDGDAV----VRLFVVTANG-TVYRARNLVLGVGT  155 (436)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCC---CCEECCCCCCCCCCE----EEEEEECCCC-CEEEEEEEEECCCC
T ss_conf             655420023555888999999998408-72336---870122102477630----5899982788-47886037982599


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCC-CCCCC--CCCCCCCCCCCCCCCCHHH-HH---CCCCHHHHHHCCCCCCC-----
Q ss_conf             5244457665321002453057411-11113--3321012344543320132-20---12201110000111221-----
Q gi|254781053|r  145 EASGLPGMSIDFDEQVIVSSTGALS-FSSVP--KNLLVIGAGVIGLELGSVW-TR---LGSCVKIIEHSGTILNG-----  212 (466)
Q Consensus       145 ~p~~iP~~~~~~~~~~~~t~~~~~~-l~~~P--~~ivIIGgG~ig~E~A~~~-~~---lG~~Vtli~~~~~ll~~-----  212 (466)
                      +|. ||..-....+..++.+.+.++ ..+++  ++|+|||+|..|.|+-.-+ .+   ...++.++.|+..++|.     
T Consensus       156 ~P~-IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf  234 (436)
T COG3486         156 QPY-IPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKF  234 (436)
T ss_pred             CCC-CCHHHHCCCCCCEEEHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             767-8767737575332524889876078654762899847823999999997277875731001113677772433413


Q ss_pred             ----CCCCCCCC------------------------------C-----CCCC--CCCCCCCCCCHHHHHHHCCCCC-CEE
Q ss_conf             ----22221122------------------------------2-----2222--2222223220023442014687-216
Q gi|254781053|r  213 ----MDKEIAAH------------------------------C-----LKIM--SKQGMNFQLNSKVSSVKKVKGK-AQV  250 (466)
Q Consensus       213 ----~d~~~~~~------------------------------~-----~~~l--~~~gV~i~~~~~v~~i~~~~~~-~~v  250 (466)
                          |.|+..+.                              +     .+.+  .+..|+++.++++..++...++ ..+
T Consensus       235 ~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l  314 (436)
T COG3486         235 GLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRL  314 (436)
T ss_pred             HHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEEEE
T ss_conf             45442810377884399899998876117532345888999999999998735888770001355213555278953888


Q ss_pred             EEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEE--ECCCCCCCCCCCCCCCEEEC-----CCCEEECCCC-----CC
Q ss_conf             99972-133211000002320453121036784000--01267642233377633302-----6848702433-----35
Q gi|254781053|r  251 VYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEI--GINIDHRGCIEIGGQFQTSI-----STIYAIGDVV-----RG  317 (466)
Q Consensus       251 ~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~--gi~~~~~G~I~vd~~~~Ts~-----p~IyA~GDv~-----g~  317 (466)
                      .++.. .++..+++.|.|++|||.+..+..+ |+-+  .+..++.|..+|++.++...     -.||+.|=..     |.
T Consensus       315 ~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~  393 (436)
T COG3486         315 TLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGA  393 (436)
T ss_pred             EEEECCCCCCEEEEEEEEEEECCCCCCCCHH-HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCEEEEECCCCCCCCCCC
T ss_conf             8764257983688861899803456678646-666778624564687476474565037987630798146433466677


Q ss_pred             CCCCCEECCCCCCEEECC
Q ss_conf             434430001232012011
Q gi|254781053|r  318 PMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       318 ~~l~~~A~~~g~~aa~~i  335 (466)
                      |.|.-.|++.+.++...+
T Consensus       394 pdLsl~a~Raa~I~~~L~  411 (436)
T COG3486         394 PDLSLGAWRAAVILNSLL  411 (436)
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             540279999999999873


No 78 
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.47  E-value=1.1e-13  Score=118.24  Aligned_cols=118  Identities=17%  Similarity=0.233  Sum_probs=74.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE------EC-----CCCCEEE
Q ss_conf             112222222222222322002344201468721699972133211000002320453121------03-----6784000
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY------TK-----GLGLEEI  285 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn------~~-----~l~Le~~  285 (466)
                      +.+.+.+.|++.|+.+..+.+|.+.+..++.+...+ ..++....+.+|.+++|+|.-=.      -+     -++|+-.
T Consensus       264 L~~aL~~~~~~~Gg~~~~g~~V~~~~~~~~~v~~v~-t~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~L~V~  342 (425)
T PRK05329        264 LQNALRRRFERLGGVLMPGDEVLRATCEDGRVTGIW-TRNHADIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVL  342 (425)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEE-ECCCCCEEEECCEEEEECCCCCCCCEECCCCCEEEECCCCCCC
T ss_conf             999999999986978966998887898699899999-0278842761376999037766698853689256104599889


Q ss_pred             E---------------CCCCCCCCCCCCCCCEE-----ECCCCEEECCCCCCCCCCC------EECCCCCCEEECCC
Q ss_conf             0---------------12676422333776333-----0268487024333543443------00012320120111
Q gi|254781053|r  286 G---------------INIDHRGCIEIGGQFQT-----SISTIYAIGDVVRGPMLAH------KAEDEGIAVAEIIS  336 (466)
Q Consensus       286 g---------------i~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~~~l~~------~A~~~g~~aa~~i~  336 (466)
                      .               =.+..-| +.||+.||.     ..+|+||+|-+.+++.-..      +|.-.|..|+++|.
T Consensus       343 ~~~~R~~W~~~~ff~~hp~~~~G-V~tD~~lrP~~g~~~~~NL~aaGsvL~G~d~~~e~~G~GVAi~Ta~~Aa~~i~  418 (425)
T PRK05329        343 QTADRAEWYDGDFFAPHPFQQFG-VATDDTLRPSQGGQVIENLYAAGAVLGGYDPIAEGCGSGVAVATALHAAEQIA  418 (425)
T ss_pred             CCCCHHHCCCCCCCCCCHHHHCC-CEECCCCCCCCCCCCCCCCEEECHHHCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99885663330135778255458-67787778257985345516724133288767737774288999999999999


No 79 
>KOG1399 consensus
Probab=99.45  E-value=2e-12  Score=108.95  Aligned_cols=303  Identities=20%  Similarity=0.253  Sum_probs=147.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH----HH---HHHHCCEEC
Q ss_conf             93319999898668999999998799399993799715025136673709899999999999----98---667558164
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI----AK---EAGDLGINI   73 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~----~~---~~~~~g~~~   73 (466)
                      |+=+|+|||||||||.+|..|.+.|++++++|+.+.+||+  +.=+-+... .+ +.+++.+    .+   ...+|....
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl--W~y~~~~~~-~~-ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399           5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL--WKYTENVEV-VH-SSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCE--EEECCCCCC-CC-CCHHHHHHCCCCHHHHCCCCCCCCC
T ss_conf             7785489785668889999998779983699705874545--860576565-54-3243421046884442579989754


Q ss_pred             CCC-C-CCHHHHHHHHHHHHHHHHH--HHHHHHHCCCEEEEE-EEEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCC-
Q ss_conf             775-3-2899999999999998777--778764004310110-011100222102357521-12322100004676652-
Q gi|254781053|r   74 ASC-H-LDLKKMMSYKKSIVESNTQ--GINFLLKKNKIITYH-GSARIVSNNKILVKGSSS-EETIEAKNIVIATGSEA-  146 (466)
Q Consensus        74 ~~~-~-~d~~~~~~~~~~~v~~~~~--~~~~~~~~~~V~~~~-g~a~~~~~~~v~V~~~~~-~~~i~ad~iviATGs~p-  146 (466)
                      ..+ . .+-.+++++.+...+...-  .+++.-+...|+-.. |..      .|...+..+ .+..-+|.+++|||-.. 
T Consensus        81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW------~V~~~~~~~~~~~~ifd~VvVctGh~~~  154 (448)
T KOG1399          81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW------RVTTKDNGTQIEEEIFDAVVVCTGHYVE  154 (448)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCE------EEEEECCCCCEEEEEEEEEEECCCCCCC
T ss_conf             5711178888999999999873583462673465799840567741------6898148864058996389995567688


Q ss_pred             CCCCCCCC----CCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             44457665----321002453057411111-1333210123445433201322012201110000111221222211222
Q gi|254781053|r  147 SGLPGMSI----DFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHC  221 (466)
Q Consensus       147 ~~iP~~~~----~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~  221 (466)
                      +.+|.++.    .+.++ +++|.+.-.-+. .-|+++|||.|..|+|++--+++-..+|++..++...        ....
T Consensus       155 P~~P~~~g~~~~~f~G~-~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~--------~~~~  225 (448)
T KOG1399         155 PRIPQIPGPGIESFKGK-IIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV--------HVEP  225 (448)
T ss_pred             CCCCCCCCCCHHHCCCC-CEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCC--------CCCC
T ss_conf             98876788864006872-11403215765446866999887814899999999860676146430223--------3245


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE--CCCCCCCCCCCCC
Q ss_conf             22222222223220023442014687216999721332110000023204531210367840000--1267642233377
Q gi|254781053|r  222 LKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG--INIDHRGCIEIGG  299 (466)
Q Consensus       222 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g--i~~~~~G~I~vd~  299 (466)
                      ...+. .++-.+..  +.++.++.    ..+...   .....+|.+++|+|..=....  |+..+  ...+++    +-+
T Consensus       226 ~~~~~-~~~~~~~~--i~~~~e~~----~~~~~~---~~~~~~D~ii~ctgy~y~fPf--l~~~~~~~~~~~~----~~p  289 (448)
T KOG1399         226 PEILG-ENLWQVPS--IKSFTEDG----SVFEKG---GPVERVDRIIFCTGYKYKFPF--LETLGLGTVRDNI----VGP  289 (448)
T ss_pred             CCEEE-CCEEECCC--CCCCCCCC----EEEECC---CEEEEEEEEEEEEEEEEECCE--ECCCCCEEECCCC----CCC
T ss_conf             55220-33077254--33435752----189837---415876459995346760431--2368750663676----455


Q ss_pred             CCEEECCCCEEECC-CCCCC---CCCCEECCCCCCEEECCCCC
Q ss_conf             63330268487024-33354---34430001232012011122
Q gi|254781053|r  300 QFQTSISTIYAIGD-VVRGP---MLAHKAEDEGIAVAEIISGQ  338 (466)
Q Consensus       300 ~~~Ts~p~IyA~GD-v~g~~---~l~~~A~~~g~~aa~~i~~~  338 (466)
                      ......|..++-|. -.+-+   ...+.-..|++.++..+.|.
T Consensus       290 l~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~  332 (448)
T KOG1399         290 LYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR  332 (448)
T ss_pred             HHEECCCHHHCCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCC
T ss_conf             1001143210765532345723676324301344467644488


No 80 
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44  E-value=2.1e-12  Score=108.80  Aligned_cols=39  Identities=36%  Similarity=0.417  Sum_probs=35.4

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             93-3199998986689999999987993999937997150
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      |+ +||+|||+|.||++||+++++.|.+|+|+++.+..+|
T Consensus         1 m~~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~~~   40 (589)
T PRK08641          1 MAKKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             9868789989869999999999875997799977788988


No 81 
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=99.42  E-value=8e-15  Score=126.42  Aligned_cols=81  Identities=33%  Similarity=0.557  Sum_probs=76.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE
Q ss_conf             32101234454332013220122011100001112212222112222222222222322002344201468721699972
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST  255 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~  255 (466)
                      |++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++++++++..+++..+++.++
T Consensus         1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~g   80 (82)
T pfam00070         1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLETG   80 (82)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECC
T ss_conf             99999988999999999986392789981257330227988999999999866999974999999999699999999889


Q ss_pred             C
Q ss_conf             1
Q gi|254781053|r  256 D  256 (466)
Q Consensus       256 ~  256 (466)
                      +
T Consensus        81 d   81 (82)
T pfam00070        81 D   81 (82)
T ss_pred             C
T ss_conf             9


No 82 
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.37  E-value=3.7e-12  Score=106.98  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=32.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             319999898668999999998799399993799715025
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      .||+|||+|.||++||+++++. ++|+||+|....+|.+
T Consensus         4 ~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~~~s   41 (510)
T PRK08071          4 ADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKRNSNS   41 (510)
T ss_pred             CCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCH
T ss_conf             9999999659999999983658-9879997989999742


No 83 
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.36  E-value=8.7e-13  Score=111.60  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE------EC-----CCCCEEE
Q ss_conf             112222222222222322002344201468721699972133211000002320453121------03-----6784000
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY------TK-----GLGLEEI  285 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn------~~-----~l~Le~~  285 (466)
                      +.+.+.+.|++.|+.+..+.+|.+.+..++.+...+. .++....+.+|.+++|+|.-=.      -+     -++|+-.
T Consensus       265 L~~~L~~~f~~~Gg~~~~g~~V~~~~~~~~~v~~v~t-~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~LdV~  343 (419)
T TIGR03378       265 LEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHT-RNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVL  343 (419)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEE-CCCCCEEEECCEEEECCCCCCCCCEECCCCCEEEECCCCCCC
T ss_conf             9999999999869789669979989987998999993-378722650576999146654698853689765205699889


Q ss_pred             EC---------------CCCCCCCCCCCCCCEEE-----CCCCEEECCCCCCCC
Q ss_conf             01---------------26764223337763330-----268487024333543
Q gi|254781053|r  286 GI---------------NIDHRGCIEIGGQFQTS-----ISTIYAIGDVVRGPM  319 (466)
Q Consensus       286 gi---------------~~~~~G~I~vd~~~~Ts-----~p~IyA~GDv~g~~~  319 (466)
                      .-               .+-.- .+.||+.||.+     .+|+||+|-+.+++.
T Consensus       344 ~~~~R~~W~~~~ff~~qp~~~~-GV~tD~~lrp~~~g~~~~NLya~GsvL~G~d  396 (419)
T TIGR03378       344 QLPDRDQWYQHRFFAPHPFMQF-GVKTDAQLRPSRGGQTIENLYAIGAVLGGYD  396 (419)
T ss_pred             CCCCHHHCCCCCCCCCCHHHHC-CCEECCCCCCCCCCCCCCCEEEECHHHCCCC
T ss_conf             9887566023035688801332-8678877783567834565067231231887


No 84 
>PRK08275 putative oxidoreductase; Provisional
Probab=99.36  E-value=1.3e-11  Score=103.13  Aligned_cols=36  Identities=39%  Similarity=0.577  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf             933199998986689999999987--993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~   36 (466)
                      +++||+|||||.||+.||+.|++.  |.+|+||+|...
T Consensus         8 i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             87288999971999999999998689897999979998


No 85 
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36  E-value=1.4e-11  Score=102.91  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             319999898668999999998799399993799715025
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      -||+|||+|.||+.||+.|++.|.+|+|+||.+..+|.+
T Consensus        16 tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~g~s   54 (533)
T PRK07804         16 ADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTATAT   54 (533)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf             688999964999999999986799889997889999707


No 86 
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35  E-value=7.7e-12  Score=104.68  Aligned_cols=38  Identities=26%  Similarity=0.423  Sum_probs=34.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             31999989866899999999879939999379971502
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |||+|||+|.||++||+++++.|.+|+||+|....+|.
T Consensus         8 ~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~~~s~   45 (588)
T PRK08958          8 FDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             79899995499999999998749938999788989986


No 87 
>KOG3851 consensus
Probab=99.33  E-value=3.5e-13  Score=114.48  Aligned_cols=299  Identities=20%  Similarity=0.299  Sum_probs=146.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHH-HCCC-CEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             331999989866899999999-8799-39999379971502513667370989999999999998667558164775328
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAA-QLKN-KVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~-~~G~-~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      +|.|+|+|||.+|++.|.+.. ++|. +|.+||..+.                            +....||......  
T Consensus        39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~----------------------------HyYQPgfTLvGgG--   88 (446)
T KOG3851          39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED----------------------------HYYQPGFTLVGGG--   88 (446)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHH----------------------------CCCCCCEEEECCC--
T ss_conf             3489998678630578999986568985577552153----------------------------2457651786430--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCC
Q ss_conf             9999999999999877777876400431011001110022210235752112322100004676652--44457665321
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA--SGLPGMSIDFD  157 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p--~~iP~~~~~~~  157 (466)
                      +..+-..+....+-...+.. +++ .+|..++     -+.|+|.  +.+ .++|+||++|||+|-.-  -.|+|+...++
T Consensus        89 l~~l~~srr~~a~liP~~a~-wi~-ekv~~f~-----P~~N~v~--t~g-g~eIsYdylviA~Giql~y~~IkGl~Eal~  158 (446)
T KOG3851          89 LKSLDSSRRKQASLIPKGAT-WIK-EKVKEFN-----PDKNTVV--TRG-GEEISYDYLVIAMGIQLDYGKIKGLVEALD  158 (446)
T ss_pred             HHHHHHCCCCCCCCCCCCCH-HHH-HHHHHCC-----CCCCEEE--CCC-CCEEEEEEEEEEEECEECCCHHCCHHHHCC
T ss_conf             44465536741111567758-999-8887508-----7767477--059-967766567665402444020037576625


Q ss_pred             CEEEEEEC----------CCCCCC------CCCCC-CCCCCCCCCCCCCC-HHHHHCCCC--HHHHHHCCCCCCC-C-CC
Q ss_conf             00245305----------741111------11333-21012344543320-132201220--1110000111221-2-22
Q gi|254781053|r  158 EQVIVSST----------GALSFS------SVPKN-LLVIGAGVIGLELG-SVWTRLGSC--VKIIEHSGTILNG-M-DK  215 (466)
Q Consensus       158 ~~~~~t~~----------~~~~l~------~~P~~-ivIIGgG~ig~E~A-~~~~~lG~~--Vtli~~~~~ll~~-~-d~  215 (466)
                      ...+.+.-          .+++++      ..|.. +-.-|+-.-.+=++ ++|++.|.+  +.++....  |+. | =+
T Consensus       159 tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk  236 (446)
T KOG3851         159 TPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVK  236 (446)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC--CCCEECHH
T ss_conf             9983554686789999999972357865783499864117885331123599998727555652798517--65010378


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCC
Q ss_conf             21122222222222223220023442014687216999721332110000023204531210367840000126764223
Q gi|254781053|r  216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCI  295 (466)
Q Consensus       216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I  295 (466)
                      ..++.+++..+++.|++.+.....++...+....-...+..|..++++++++-+.--..  +.. -|.+..+ .|+.|++
T Consensus       237 ~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms--~pe-~l~~s~~-adktGfv  312 (446)
T KOG3851         237 HYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMS--TPE-VLANSDL-ADKTGFV  312 (446)
T ss_pred             HHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCC--CHH-HHHCCCC-CCCCCCE
T ss_conf             89999999987545376301235898536414388754799851477560364169988--725-5413756-5755646


Q ss_pred             CCCC-CCEE-ECCCCEEECCCCCCCCCCCE--ECCCCCCEEECC----CCCCCCCCCCC
Q ss_conf             3377-6333-02684870243335434430--001232012011----12222222333
Q gi|254781053|r  296 EIGG-QFQT-SISTIYAIGDVVRGPMLAHK--AEDEGIAVAEII----SGQKGHVNYGI  346 (466)
Q Consensus       296 ~vd~-~~~T-s~p~IyA~GDv~g~~~l~~~--A~~~g~~aa~~i----~~~~~~~~~~~  346 (466)
                      -||. .+|. ..||||++|||.+.|.--..  ...|.-++-+|+    .|+...+.|+.
T Consensus       313 dVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydG  371 (446)
T KOG3851         313 DVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDG  371 (446)
T ss_pred             ECCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf             54732320256887024123468995266788874274435659999647986400167


No 88 
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.33  E-value=3.1e-12  Score=107.59  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=33.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             331999989866899999999879939999379971502
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |.||+|||+|.||++||+++++.|.+|+|+++.+.-+.+
T Consensus         1 mtdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~~~~s   39 (464)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSKDSNS   39 (464)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf             987999897699999999999749969999589999514


No 89 
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33  E-value=1.4e-11  Score=102.86  Aligned_cols=34  Identities=41%  Similarity=0.580  Sum_probs=30.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |..||+|||+|.||+.||++|++.| +|+|+++..
T Consensus         6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~   39 (539)
T PRK06263          6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGL   39 (539)
T ss_pred             EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCC
T ss_conf             9649899995399999999998259-979997789


No 90 
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32  E-value=1.8e-11  Score=102.07  Aligned_cols=41  Identities=34%  Similarity=0.530  Sum_probs=35.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEE
Q ss_conf             9331999989866899999999879--9399993799715025
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTC   41 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC   41 (466)
                      |.|||+|||+|.||++||+++++.|  .+|+|+||....+|.|
T Consensus         2 ~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s   44 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHS   44 (575)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
T ss_conf             4089899996599999999999878998299997889999726


No 91 
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.31  E-value=1.8e-11  Score=101.92  Aligned_cols=45  Identities=33%  Similarity=0.517  Sum_probs=36.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE-EEECCC
Q ss_conf             3319999898668999999998799399993799715025-136673
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC-LNIGCI   47 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC-~~~GCi   47 (466)
                      +|||+|||+|.||+.||+++++. .+|+|++|.+..+|.+ ...|.|
T Consensus         8 ~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi   53 (535)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGI   53 (535)
T ss_pred             CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCE
T ss_conf             28989999539999999974038-98899978899997278870853


No 92 
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.31  E-value=1.3e-11  Score=102.99  Aligned_cols=39  Identities=31%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             3319999898668999999998799399993799715025
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      +|||+|||+|.||++||+.+++ +.+|+||+|.+..+|.+
T Consensus        10 ~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s   48 (556)
T PRK07395         10 QFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSAS   48 (556)
T ss_pred             CCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHH
T ss_conf             5978999963999999997235-99889998999999626


No 93 
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.31  E-value=1.4e-12  Score=110.13  Aligned_cols=137  Identities=28%  Similarity=0.464  Sum_probs=74.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------EEE--EEECCCCHHHH---------HHHH-HHH-
Q ss_conf             93319999898668999999998799399993799715--------025--13667370989---------9999-999-
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--------GTC--LNIGCIPSKAL---------LHAS-EMY-   59 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--------GtC--~~~GCiPsK~l---------~~~a-~~~-   59 (466)
                      |+|||+|||||||||.||..++++|.+|+|||+.+.+|        |-|  -|. |.|.-.+         ++++ ..+ 
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~-~~~~~~ls~~p~~~~fl~sal~~ft   80 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNS-EAPDEFLSRNPGNGHFLKSALARFT   80 (408)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCC-CCHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf             742189988878899999988646987999805864221368537887433265-0589999758982067788987279


Q ss_pred             -HHHHHHHHHCCEECCCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCC-CCCCCCCCCCCC
Q ss_conf             -99998667558164775328999999---99999998777778764004310110011--100222-102357521123
Q gi|254781053|r   60 -SHIAKEAGDLGINIASCHLDLKKMMS---YKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNN-KILVKGSSSEET  132 (466)
Q Consensus        60 -~~~~~~~~~~g~~~~~~~~d~~~~~~---~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~-~v~V~~~~~~~~  132 (466)
                       .++..-+..+|+......  ..+++-   .-..+++.    ....+++.+|++.....  .+...+ ...+...++. +
T Consensus        81 ~~d~i~~~e~~Gi~~~e~~--~Gr~Fp~sdkA~~Iv~~----ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~-~  153 (408)
T COG2081          81 PEDFIDWVEGLGIALKEED--LGRMFPDSDKASPIVDA----LLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE-T  153 (408)
T ss_pred             HHHHHHHHHHCCCEEEECC--CCEECCCCCCHHHHHHH----HHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCC-E
T ss_conf             8999999986597157746--85255786666899999----999999759589814647767633855899859998-8


Q ss_pred             CCCEEECCCCCCC
Q ss_conf             2210000467665
Q gi|254781053|r  133 IEAKNIVIATGSE  145 (466)
Q Consensus       133 i~ad~iviATGs~  145 (466)
                      +++|++|||||..
T Consensus       154 i~~d~lilAtGG~  166 (408)
T COG2081         154 VKCDSLILATGGK  166 (408)
T ss_pred             EECCEEEEECCCC
T ss_conf             9804899922886


No 94 
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30  E-value=2e-11  Score=101.68  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=34.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             93319999898668999999998799399993799715
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG   38 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G   38 (466)
                      |+|||+|||||.||++||+++++.|.+|+||+|....+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~   41 (566)
T PRK06452          4 LSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTR   41 (566)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             87078999974999999999987799789997889999


No 95 
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.30  E-value=2e-11  Score=101.74  Aligned_cols=39  Identities=33%  Similarity=0.497  Sum_probs=33.6

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             93--31999989866899999999879939999379971502
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |+  .||+|||+|.||++||+.|+ .|.+|+||+|.+..||.
T Consensus         1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~n   41 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECN   41 (433)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCC
T ss_conf             986487899995699999999617-89988999788999976


No 96 
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30  E-value=2.7e-11  Score=100.72  Aligned_cols=41  Identities=34%  Similarity=0.575  Sum_probs=34.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEE
Q ss_conf             933199998986689999999987---99399993799715025
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL---KNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~---G~~V~lIE~~~~~GGtC   41 (466)
                      ++|||+|||+|.||++||+.|++.   |.+|+|+||....+|.+
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s   47 (582)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHS   47 (582)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf             87068999973999999999998538998699997989999708


No 97 
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28  E-value=2.1e-11  Score=101.55  Aligned_cols=38  Identities=37%  Similarity=0.447  Sum_probs=34.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             33199998986689999999987993999937997150
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      +|||+|||+|.||++||+++++.|.+|+||+|....+|
T Consensus         8 e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~~   45 (631)
T PRK07803          8 EYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGKA   45 (631)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             05989999649999999999876998799978999986


No 98 
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.28  E-value=8.9e-12  Score=104.22  Aligned_cols=41  Identities=37%  Similarity=0.503  Sum_probs=38.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||||||+|.||++||++|++.|++|+||||.+.+||+...
T Consensus         7 ~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~   47 (552)
T PRK12844          7 VDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAM   47 (552)
T ss_pred             ECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             09799896789999999999889968999889996664798


No 99 
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.28  E-value=1.1e-11  Score=103.64  Aligned_cols=40  Identities=33%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             3319999898668999999998799399993799715025
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      .|||+|||+|.||++||++|++.|.+|+||||....||.+
T Consensus        34 ~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~~snS   73 (622)
T PTZ00139         34 TYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPTRSHT   73 (622)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf             6587999966999999999997699089997889999748


No 100
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27  E-value=5.8e-11  Score=98.32  Aligned_cols=38  Identities=34%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             33199998986689999999987993999937997150
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      .|||+|||+|.||++||++|++.|.+|+||+|....+|
T Consensus        12 e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~~~s   49 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFPTRS   49 (598)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             37989999569999999999874990799978899998


No 101
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.27  E-value=4.7e-11  Score=98.94  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=29.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             33199998986689999999987993999937997
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      -+||+|||+|.||++||+++++.  +|+||++.+.
T Consensus         9 ~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~   41 (507)
T PRK07512          9 TGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPL   41 (507)
T ss_pred             CCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf             69989999669999999983307--8399990588


No 102
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.26  E-value=1.5e-11  Score=102.52  Aligned_cols=41  Identities=34%  Similarity=0.460  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEE
Q ss_conf             933199998986689999999987--99399993799715025
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC   41 (466)
                      |.+||+|||+|.||++||+++++.  |.+|+|++|....+|.|
T Consensus         3 ~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf             3556899996699999999999868998599997899899861


No 103
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.25  E-value=2.2e-10  Score=94.07  Aligned_cols=136  Identities=27%  Similarity=0.407  Sum_probs=77.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------EEEEEECCCCHHHHHH----HHHHHH---------H
Q ss_conf             319999898668999999998799399993799715--------0251366737098999----999999---------9
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--------GTCLNIGCIPSKALLH----ASEMYS---------H   61 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--------GtC~~~GCiPsK~l~~----~a~~~~---------~   61 (466)
                      |||+||||||||+.||++|++.|++|+|+|+.+.+|        |-|=-.=|.+.+.++.    ..+.+.         +
T Consensus         1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d   80 (405)
T pfam03486         1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD   80 (405)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf             97999996699999999998689959999589987501588268961407899979998625775799999998489999


Q ss_pred             HHHHHHHCCEECCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC-CCCCCCCCCCCCCC
Q ss_conf             998667558164775---32899999999999998777778764004310110011--100-222-10235752112322
Q gi|254781053|r   62 IAKEAGDLGINIASC---HLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN-KILVKGSSSEETIE  134 (466)
Q Consensus        62 ~~~~~~~~g~~~~~~---~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~-~v~V~~~~~~~~i~  134 (466)
                      ...-+...|+.....   ++ ++.- ..-..+++.+    ...+++.+|++..+..  .+. +.. ...+..  ..+++.
T Consensus        81 ~~~ff~~~Gl~~~~e~~Grv-fP~s-~~A~~Vl~~L----~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~--~~~~~~  152 (405)
T pfam03486        81 FIAWFEELGVPLKEEDHGRL-FPVS-DKASDIVDAL----LNELKELGVKIRTRTRVLSVEKDDDGRFRVDT--GGEELE  152 (405)
T ss_pred             HHHHHHHCCCEEEECCCCEE-ECCC-CCHHHHHHHH----HHHHHHCCCEEEECCEEEEEEECCCCEEEEEE--CCCEEE
T ss_conf             99999977990597789979-7898-9869999999----99999779789958887899975994599994--895897


Q ss_pred             CEEECCCCCCCC
Q ss_conf             100004676652
Q gi|254781053|r  135 AKNIVIATGSEA  146 (466)
Q Consensus       135 ad~iviATGs~p  146 (466)
                      +|++|||||+..
T Consensus       153 a~~vIlAtGG~s  164 (405)
T pfam03486       153 ADSLVLATGGLS  164 (405)
T ss_pred             ECEEEEECCCCC
T ss_conf             278999048866


No 104
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.25  E-value=1.1e-10  Score=96.38  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             3199998986689999999987993999937997150
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      |||+|||+|.||++||+++++.|.+|+|++|.+..++
T Consensus         6 tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~~s   42 (657)
T PRK08626          6 TDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPAKRS   42 (657)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             1689999659999999999975995799968889998


No 105
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24  E-value=2.9e-11  Score=100.45  Aligned_cols=39  Identities=26%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             933199998986689999999987993999937997150
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ++|||+|||+|.||++||++|++.|.+|+|++|....+|
T Consensus        11 ~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~~s   49 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS   49 (591)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             477889999669999999999876995899978899997


No 106
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.22  E-value=5.2e-11  Score=98.67  Aligned_cols=42  Identities=43%  Similarity=0.602  Sum_probs=38.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             331999989866899999999879939999379971502513
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      -|||||||+|.||++||+++++.|++|+||||.+.+||+...
T Consensus        10 e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~   51 (579)
T PRK06134         10 ECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAW   51 (579)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             718699896789999999999879948999799988736777


No 107
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21  E-value=3.5e-10  Score=92.62  Aligned_cols=35  Identities=40%  Similarity=0.618  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      +-+||+|||||.||..||+++++.+.+|+|+||..
T Consensus        12 ~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~   46 (894)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAH   46 (894)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             37787998897268899999760699589985456


No 108
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.20  E-value=7.1e-11  Score=97.67  Aligned_cols=43  Identities=42%  Similarity=0.656  Sum_probs=39.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             9331999989866899999999879939999379971502513
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |-|||||||+|.||++||++|++.|++|+||||.+.+||+...
T Consensus         4 ie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~   46 (567)
T PRK12842          4 LSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAF   46 (567)
T ss_pred             CEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             3059699896889999999999879908999779988856798


No 109
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.20  E-value=2.3e-10  Score=93.96  Aligned_cols=261  Identities=16%  Similarity=0.242  Sum_probs=128.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             319999898668999999998-7993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      |=|.|||+||||+.||-.|.+ -+.+|-|+|+-+..=|                          .-.||+-..-++  . 
T Consensus        40 lRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfG--------------------------LVRyGVAPDHpe--v-   90 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG--------------------------LIRYGVAPDHIH--V-   90 (506)
T ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC--------------------------CCCCCCCCCCHH--H-
T ss_conf             57999888838999999996389977988826898874--------------------------111046889856--6-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC--CCEEECCCCCCCCC------------
Q ss_conf             9999999999987777787640043101100111002221023575211232--21000046766524------------
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETI--EAKNIVIATGSEAS------------  147 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i--~ad~iviATGs~p~------------  147 (466)
                            +++    ...++..+...++.++       .+  |.|-.+-+-+++  .||.+|+|+|+.-.            
T Consensus        91 ------Knv----~~~f~~~a~~p~~rF~-------GN--V~vG~Ditl~eL~~~YdAVVlA~GAs~~~~~~~~~~~~~~  151 (506)
T PTZ00188         91 ------KNT----YRTFDLVFSSPNYRFF-------GN--VHVGVDLKMEELRRHYNCVIFCCGASEVSIPIGQQDEDKA  151 (506)
T ss_pred             ------HHH----HHHHHHHHCCCCEEEE-------EC--EEECCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             ------068----9999999658975999-------47--3348988999998638999994797855556776520025


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCC-------------C----C--CCCCCCCCCCCCCCCCCCHHHHH-------------
Q ss_conf             44576653210024530574111-------------1----1--13332101234454332013220-------------
Q gi|254781053|r  148 GLPGMSIDFDEQVIVSSTGALSF-------------S----S--VPKNLLVIGAGVIGLELGSVWTR-------------  195 (466)
Q Consensus       148 ~iP~~~~~~~~~~~~t~~~~~~l-------------~----~--~P~~ivIIGgG~ig~E~A~~~~~-------------  195 (466)
                      .+|+...+.....++++.++-.|             +    .  ..++++|||.|.+|+..|-+|.+             
T Consensus       152 ~~~ge~lp~~~~Gv~sA~eFV~WYNGhp~d~~~~~~~~~l~~~~~~~~avVIGnGNVALDVARILl~~~deL~~TDI~~~  231 (506)
T PTZ00188        152 VSGGETNPRKQNGLFHARDLIYFYNNMYNDVRCRAVENYLKSFENFTTCIIIGNGNVSLDIARILVKSPNHLSKTDISSD  231 (506)
T ss_pred             CCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHCCCCCHHH
T ss_conf             88622145545772847771102039996312343322233324575479978873588878773589778435787199


Q ss_pred             ----C-C---CCHHHHHHCCCC--------------CCCC----CC-------------CCCC-------CCCCCC---C
Q ss_conf             ----1-2---201110000111--------------2212----22-------------2112-------222222---2
Q gi|254781053|r  196 ----L-G---SCVKIIEHSGTI--------------LNGM----DK-------------EIAA-------HCLKIM---S  226 (466)
Q Consensus       196 ----l-G---~~Vtli~~~~~l--------------l~~~----d~-------------~~~~-------~~~~~l---~  226 (466)
                          | .   .+|+|+-|+.-+              |+..    |+             ...+       .+++.+   +
T Consensus       232 AL~~L~~S~Vk~V~ivGRRGp~qaaFT~kELREL~~L~~~~vvv~p~d~dl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  311 (506)
T PTZ00188        232 YLKVMKQHKIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEANTNMKKRQHEIFQKMVKNYE  311 (506)
T ss_pred             HHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHH
T ss_conf             99999868984799984358776066879999874689953885756514333333300102367789999999874055


Q ss_pred             ---C--------CCCCCCCCHHHHHHHCCCCCCE-EEEEEE---------CCCCCCCEEEEEEECCCCEEEECCCCCEEE
Q ss_conf             ---2--------2222322002344201468721-699972---------133211000002320453121036784000
Q gi|254781053|r  227 ---K--------QGMNFQLNSKVSSVKKVKGKAQ-VVYRST---------DDEPINIEADAVLVAAGRRPYTKGLGLEEI  285 (466)
Q Consensus       227 ---~--------~gV~i~~~~~v~~i~~~~~~~~-v~~~~~---------~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~  285 (466)
                         +        .-+.+++...+.++...++... +.+...         .++.++++++.|+-++|.+..  .  +.  
T Consensus       312 ~~~~~~~~~~~~~~~~~~f~~~p~~i~~~~g~v~~~~l~~n~~~~~~~~~~~e~e~i~~~LVirSIGYrg~--~--~~--  385 (506)
T PTZ00188        312 EVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNRNVPMSFSSFKENKVLVTPLVIFATGFKKS--N--FA--  385 (506)
T ss_pred             HCCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEEECCCCCCC--C--CC--
T ss_conf             40358554566305899843786125157994568997734654677777551389877989979376889--9--89--


Q ss_pred             ECCCCCCCCCCCCCCCEEECCCCEEECCCCCCC
Q ss_conf             012676422333776333026848702433354
Q gi|254781053|r  286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGP  318 (466)
Q Consensus       286 gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~  318 (466)
                      +...++.+....|+..+ ..+++|++|=+-.+|
T Consensus       386 ~~~~~~~~~~~~~~~g~-~~~glY~aGWiKRGP  417 (506)
T PTZ00188        386 ENLYNQSVQMFREDIGQ-HKFAIFKAGWFDKGP  417 (506)
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCC
T ss_conf             88888777766788888-678728657456388


No 110
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.19  E-value=1.6e-10  Score=95.01  Aligned_cols=41  Identities=41%  Similarity=0.547  Sum_probs=38.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||||||+|.||++||+++++.|++|+||||...+||+...
T Consensus        15 ~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~   55 (576)
T PRK12843         15 TDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTAT   55 (576)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             28699896889999999999889948999797999815666


No 111
>KOG1800 consensus
Probab=99.18  E-value=1.3e-10  Score=95.88  Aligned_cols=276  Identities=19%  Similarity=0.318  Sum_probs=138.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHH
Q ss_conf             199998986689999999987--993999937997150251366737098999999999999866755816477532899
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLK   81 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~   81 (466)
                      -|.|||+||||+.+|-.+-+.  +.+|.|+|+.+..+|. +.+|--|                         ..+.+   
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAP-------------------------DHpEv---   72 (468)
T KOG1800          22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAP-------------------------DHPEV---   72 (468)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCE-EEECCCC-------------------------CCCCH---
T ss_conf             599988883688999999725899706754157766533-6633478-------------------------98210---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCC-CC--CCCCCCCCC
Q ss_conf             999999999998777778764004310110011100222102357521123--2210000467665-24--445766532
Q gi|254781053|r   82 KMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEET--IEAKNIVIATGSE-AS--GLPGMSIDF  156 (466)
Q Consensus        82 ~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~--i~ad~iviATGs~-p~--~iP~~~~~~  156 (466)
                            +.++..+.+-    ++..       .-+|..+-  .|-.+-.-++  =.||.+|||.||. ++  .|||.+.  
T Consensus        73 ------KnvintFt~~----aE~~-------rfsf~gNv--~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l--  131 (468)
T KOG1800          73 ------KNVINTFTKT----AEHE-------RFSFFGNV--KVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEEL--  131 (468)
T ss_pred             ------HHHHHHHHHH----HHCC-------CEEEEECC--EECCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCC--
T ss_conf             ------1478888887----5135-------44898030--1046310899862166799971588874068987434--


Q ss_pred             CCEEEEEECCCCCC------------CCCCCCCCCCCCCCCCCCCCHHHHH---------------CC-------CCHHH
Q ss_conf             10024530574111------------1113332101234454332013220---------------12-------20111
Q gi|254781053|r  157 DEQVIVSSTGALSF------------SSVPKNLLVIGAGVIGLELGSVWTR---------------LG-------SCVKI  202 (466)
Q Consensus       157 ~~~~~~t~~~~~~l------------~~~P~~ivIIGgG~ig~E~A~~~~~---------------lG-------~~Vtl  202 (466)
                        ..+++.+.+-.|            +--.++++|||.|.+++..|-+|-.               +.       .+|+|
T Consensus       132 --~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~l  209 (468)
T KOG1800         132 --SGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKL  209 (468)
T ss_pred             --CCCEEHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf             --561226665411058873122575655543799746820122245550786320023678578875530377534899


Q ss_pred             HHHCCCC--------------CCCC----CC-CCC-------------------CCCCCCCCC---------CC---CCC
Q ss_conf             0000111--------------2212----22-211-------------------222222222---------22---223
Q gi|254781053|r  203 IEHSGTI--------------LNGM----DK-EIA-------------------AHCLKIMSK---------QG---MNF  232 (466)
Q Consensus       203 i~~~~~l--------------l~~~----d~-~~~-------------------~~~~~~l~~---------~g---V~i  232 (466)
                      +-|++-+              |+..    |+ +++                   +.+.+.+.+         .+   -.+
T Consensus       210 vgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~  289 (468)
T KOG1800         210 VGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHL  289 (468)
T ss_pred             EECCCCCCEEEEHHHHHHHHCCCCCCCCCCCHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             84157420002489899986788865445722015503775446544740678999999988643203643676414578


Q ss_pred             CCCHHHHHHHCCCCC-CEEEEE----E-----ECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf             220023442014687-216999----7-----213321100000232045312103678400001267642233377633
Q gi|254781053|r  233 QLNSKVSSVKKVKGK-AQVVYR----S-----TDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQ  302 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~-~~v~~~----~-----~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~  302 (466)
                      .+.-.+.+|....++ ..+.+.    .     ..+..++++|+.++.++|.+-..    +. .||.+|.+..|.-|.+.+
T Consensus       290 ~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p----v~-~gipFd~~kgvv~n~~Gr  364 (468)
T KOG1800         290 RFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVP----VD-SGIPFDDKKGVVPNVNGR  364 (468)
T ss_pred             HHHCCHHHHCCCCCCCCCEEEEEEEEHHHCCCCCCCEEEECCCEEEEEEEECCCC----CC-CCCCCCCCCCCCCCCCCE
T ss_conf             8752988763686653541787543101014566752762132367630000244----68-998966444746687856


Q ss_pred             EE----CCCCEEECCCCCCCC-CCCEECCCCCCEEECCC
Q ss_conf             30----268487024333543-44300012320120111
Q gi|254781053|r  303 TS----ISTIYAIGDVVRGPM-LAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       303 Ts----~p~IyA~GDv~g~~~-l~~~A~~~g~~aa~~i~  336 (466)
                      ..    .|++|++|=|-.+|. .--.+++++..+++.|.
T Consensus       365 V~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~  403 (468)
T KOG1800         365 VLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV  403 (468)
T ss_pred             EEEECCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHH
T ss_conf             885214774478742224886344002566899999999


No 112
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.16  E-value=2e-10  Score=94.44  Aligned_cols=36  Identities=33%  Similarity=0.369  Sum_probs=34.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             933199998986689999999987993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |+|||+|||||..|+++|.+|+++|++|+|+|+...
T Consensus         2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~   37 (377)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMP   37 (377)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             504899999529999999999978995999928998


No 113
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15  E-value=3.7e-10  Score=92.47  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=32.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             33199998986689999999987993999937997150
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      +|||+|||+|.||++||+++++ +.+|+||+|....++
T Consensus         5 ~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~~~s   41 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYPTRS   41 (583)
T ss_pred             CCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCC
T ss_conf             1788999962999999997156-997799978899997


No 114
>PRK11728 hypothetical protein; Provisional
Probab=99.14  E-value=4.5e-11  Score=99.09  Aligned_cols=196  Identities=18%  Similarity=0.286  Sum_probs=98.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             933199998986689999999987--993999937997150251366737098999999999999866755816477532
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |||||+|||||..|++.|.+|+++  +.+|+|+||++.+|--       -|+   +++..++        -|+.....+ 
T Consensus         1 m~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~-------~S~---rNSgviH--------aG~~y~p~s-   61 (400)
T PRK11728          1 MMYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARH-------QTG---HNSGVIH--------AGVYYTPGS-   61 (400)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-------CCC---CCHHHCC--------CCCCCCCCC-
T ss_conf             953099999679999999999955999839999689997563-------353---2423215--------643589999-


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCC-----C
Q ss_conf             89999999999999877777876400431011001110022210235752112322100004676652-44457-----6
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA-SGLPG-----M  152 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p-~~iP~-----~  152 (466)
                       ++.-      +..+-.+.+....+..++.+-                       +..++++|+.-.. ..+..     .
T Consensus        62 -lka~------l~~~g~~l~~~~~~~~~i~~~-----------------------~~GkliVA~~~~e~~~L~~l~~~~~  111 (400)
T PRK11728         62 -LKAR------FCRRGNEATKAFCDQHGIPYE-----------------------VCGKLLVATSELELERMEALYERAA  111 (400)
T ss_pred             -HHHH------HHHHHHHHHHHHHHHCCCCCC-----------------------CCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf             -9999------999999999999998599921-----------------------1686999779999999999999998


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf             653210024530574111111333210123445433201322012201110000111221222-2112222222222222
Q gi|254781053|r  153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDK-EIAAHCLKIMSKQGMN  231 (466)
Q Consensus       153 ~~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~-~~~~~~~~~l~~~gV~  231 (466)
                      .... ....++.+++.+++  |. +.-+|+         .|.          ...-+   .|+ ++.+.+.+.++++|++
T Consensus       112 ~ngv-~~~~l~~~ei~~~e--P~-v~~~~a---------l~~----------p~tgi---vD~~~l~~al~~~a~~~G~~  165 (400)
T PRK11728        112 ANGI-EVERLDAEELRERE--PN-IRGLGA---------IFV----------PSTGI---VDYRAVAEAMAELIQARGGE  165 (400)
T ss_pred             HCCC-CEEEECHHHHHHHC--CC-CCCCCE---------EEC----------CCCEE---ECHHHHHHHHHHHHHHCCCE
T ss_conf             5698-62896799999868--86-543235---------976----------87727---78999999999999978989


Q ss_pred             CCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf             32200234420146872169997213321100000232045312
Q gi|254781053|r  232 FQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRP  275 (466)
Q Consensus       232 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P  275 (466)
                      ++++++|++++..+++..+..  .++  .++.++.|+.|.|--.
T Consensus       166 i~~~~~V~~i~~~~~~~~v~t--~~~--~~i~a~~vINaAGl~A  205 (400)
T PRK11728        166 IRLGAEVTALDEHANGVVVRT--SQG--GEFEARTLVNCAGLMS  205 (400)
T ss_pred             EEECCEEEEEEEECCEEEEEE--CCC--CEEEEEEEEECCCHHH
T ss_conf             992788989999799999998--899--8899718998666528


No 115
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11  E-value=1.5e-09  Score=88.01  Aligned_cols=203  Identities=20%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCC-EEE------EEECCCCHHHHHHH-HH----HHHHHHHHH
Q ss_conf             331999989866899999999879---9399993799715-025------13667370989999-99----999999866
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYG-GTC------LNIGCIPSKALLHA-SE----MYSHIAKEA   66 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~G-GtC------~~~GCiPsK~l~~~-a~----~~~~~~~~~   66 (466)
                      +|+|+|||+|+.|+..|..|.+.-   .++.|+|+.+.+| |..      .|.=-||++-|--. ..    ..+.+....
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~   80 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL   80 (474)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             95189978865799999999847887775678535554578755788882144216202354458998168999997425


Q ss_pred             HHCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC---EEEEEEEEEECCC---CC-CCCCCCCCCCCCCCEEEC
Q ss_conf             7558164775328999999999999987777787640043---1011001110022---21-023575211232210000
Q gi|254781053|r   67 GDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNK---IITYHGSARIVSN---NK-ILVKGSSSEETIEAKNIV  139 (466)
Q Consensus        67 ~~~g~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~---V~~~~g~a~~~~~---~~-v~V~~~~~~~~i~ad~iv  139 (466)
                      ..+... .....| .+...-+.-+-+.+.+.+..+++...   |..++..+.=+..   .. ..+...+ .....+|-+|
T Consensus        81 ~~~~d~-~~~~~d-~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~-g~~~~ad~~V  157 (474)
T COG4529          81 QRYRDP-EDINHD-GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTAD-GPSEIADIIV  157 (474)
T ss_pred             CCCCCH-HHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEECCC-CCEEEEEEEE
T ss_conf             565775-443776-5346615699999999999999736764046776444301004577357896588-8704501799


Q ss_pred             CCCCCCCCCCCCCCCCCC-CEEEE-EECCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHCCC--CHHHHHHCC
Q ss_conf             467665244457665321-00245-30574111111--3332101234454332013220122--011100001
Q gi|254781053|r  140 IATGSEASGLPGMSIDFD-EQVIV-SSTGALSFSSV--PKNLLVIGAGVIGLELGSVWTRLGS--CVKIIEHSG  207 (466)
Q Consensus       140 iATGs~p~~iP~~~~~~~-~~~~~-t~~~~~~l~~~--P~~ivIIGgG~ig~E~A~~~~~lG~--~Vtli~~~~  207 (466)
                      +|||-.++..+.....+. ...++ +....-.+..+  -.+++|+|+|..-++.--.+++-|-  ++|++.|+.
T Consensus       158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             EECCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             94368899742122113788643316558851013467783689637720577999875027756558984256


No 116
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.10  E-value=3.1e-10  Score=93.01  Aligned_cols=40  Identities=40%  Similarity=0.615  Sum_probs=37.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             9331999989866899999999879939999379971502
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |+|||+||||||||.+||..|++.|.+|+++|+.+..|.-
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k   41 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK   41 (396)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             4788999897889999999998579929999657889998


No 117
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.10  E-value=1.3e-09  Score=88.44  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCC
Q ss_conf             3319999898668999999998--7993999937997
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQ--LKNKVAIIEKEKT   36 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~--~G~~V~lIE~~~~   36 (466)
                      .+||+|||+|.||+.||++|++  .|++|+||+|...
T Consensus        11 ~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~   47 (610)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANI   47 (610)
T ss_pred             ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             7699999976999999999987789997999989999


No 118
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.10  E-value=3.7e-10  Score=92.48  Aligned_cols=41  Identities=37%  Similarity=0.589  Sum_probs=38.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE
Q ss_conf             33199998986689999999987993999937997150251
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL   42 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~   42 (466)
                      .|||||||+|.||++||+++++.|.+|+||||.+..||+..
T Consensus        60 ~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~  100 (506)
T PRK06481         60 KYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTM  100 (506)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf             84679989889999999999988997899968999995188


No 119
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.08  E-value=9.6e-10  Score=89.43  Aligned_cols=42  Identities=40%  Similarity=0.657  Sum_probs=38.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE
Q ss_conf             319999898668999999998799399993799715025136
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI   44 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~   44 (466)
                      |||||||+|.||++||++|++.|++|+||||.+.+||+....
T Consensus         6 ~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s   47 (560)
T PRK07843          6 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS   47 (560)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf             578998967899999999998899889996999977077772


No 120
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.07  E-value=6.3e-11  Score=98.07  Aligned_cols=192  Identities=20%  Similarity=0.310  Sum_probs=116.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             3332101234454332013220122011100001112-------21--2222-112222222222222322002344201
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKE-IAAHCLKIMSKQGMNFQLNSKVSSVKK  243 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~-~~~~~~~~l~~~gV~i~~~~~v~~i~~  243 (466)
                      .++|+|||+|+-||=.|+.|++.|-.||++||.||+-       |.  +|+. +.+.=.+.|+++||+|++|++|=..+.
T Consensus       151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWde  230 (517)
T TIGR01317       151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWDE  230 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             86689975675799999998535883899743678886302488874337388999999998747842017830046534


Q ss_pred             CCCCCEEEEEEECCCCCCCEEEEEEECCCCE-EE---ECCCCCEEEECCC-----CCCCCCCCCCCC-EE-ECCC-----
Q ss_conf             4687216999721332110000023204531-21---0367840000126-----764223337763-33-0268-----
Q gi|254781053|r  244 VKGKAQVVYRSTDDEPINIEADAVLVAAGRR-PY---TKGLGLEEIGINI-----DHRGCIEIGGQF-QT-SIST-----  307 (466)
Q Consensus       244 ~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~-Pn---~~~l~Le~~gi~~-----~~~G~I~vd~~~-~T-s~p~-----  307 (466)
                      ...-..+.-.+-.-++..-.+|.|++|+|-. |.   +++-.|+  ||..     ..+.....|+.+ .- ..|-     
T Consensus       231 nskitnlsk~di~~~~L~~~fDAVVLa~Ga~~pRDLpI~GREL~--GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akG  308 (517)
T TIGR01317       231 NSKITNLSKKDISADELKEDFDAVVLATGATKPRDLPIPGRELK--GIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKG  308 (517)
T ss_pred             CCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf             44200022342687998714693898337886010355776646--6037865546754856088536667887354228


Q ss_pred             --CEEEC------CCCCCCCCCCEECCCCCCEEECCCCCCCCCC--CCCCCCCEEEHHHHHHHHHCHHHHHH-CCCCEE
Q ss_conf             --48702------4333543443000123201201112222222--33332210001445510014788862-346658
Q gi|254781053|r  308 --IYAIG------DVVRGPMLAHKAEDEGIAVAEIISGQKGHVN--YGIIPSVVYTHPEVASIGKTEEQLKC-EKKSYK  375 (466)
Q Consensus       308 --IyA~G------Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~--~~~ip~~vft~peia~vGlte~~a~~-~~~~~~  375 (466)
                        |=.+|      ||.|      ++.+||-...+++---|.+..  -...||=-  -|.+-++=-..+|+++ .|.|..
T Consensus       309 K~VvvIGGGDTG~DCvG------Ts~RhGA~sV~qFE~mP~PP~~Ra~~npWP~--wP~v~r~~y~hEE~~a~~GrDpR  379 (517)
T TIGR01317       309 KKVVVIGGGDTGADCVG------TSLRHGAASVHQFEIMPKPPEERAKDNPWPE--WPKVYRVDYAHEEVKAKYGRDPR  379 (517)
T ss_pred             CEEEEECCCCCCCHHHH------HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC--CCCEEEECHHHHHHHHCCCCCCH
T ss_conf             67899757875622456------3235543552302568887767727864865--75113302668989851795601


No 121
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.04  E-value=2.1e-09  Score=87.02  Aligned_cols=77  Identities=17%  Similarity=0.311  Sum_probs=52.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC---CCC
Q ss_conf             112222222222222322002344201468721699972-1332110000023204531210367840000126---764
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI---DHR  292 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~---~~~  292 (466)
                      +.+.+.+.+++.|++|+.+++|++++..++++.+....+ .++..++.+|.|++|+|.-.  ..| ++.+|+.+   ..+
T Consensus       199 ~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS--~~L-~~~lG~~~Pl~p~r  275 (410)
T PRK12409        199 FTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGS--RQL-AAMLGDRVNVYPVK  275 (410)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCC--HHH-HHHCCCCCCEEECC
T ss_conf             999999999977999987855899998099899996464233552588304998766663--766-86538865236426


Q ss_pred             CCCC
Q ss_conf             2233
Q gi|254781053|r  293 GCIE  296 (466)
Q Consensus       293 G~I~  296 (466)
                      |+..
T Consensus       276 Gy~l  279 (410)
T PRK12409        276 GYSI  279 (410)
T ss_pred             CEEE
T ss_conf             7589


No 122
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03  E-value=2.9e-09  Score=85.99  Aligned_cols=41  Identities=34%  Similarity=0.514  Sum_probs=38.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      +||||||+|.||++||+.|++.|++|+||||.+.+||+...
T Consensus        12 ~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~   52 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL   52 (584)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             38799896789999999999889958999699998717787


No 123
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960   This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=98.99  E-value=3.4e-09  Score=85.48  Aligned_cols=37  Identities=41%  Similarity=0.622  Sum_probs=36.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCEE
Q ss_conf             1999989866899999999879-939999379971502
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGT   40 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~GGt   40 (466)
                      ||||||+|.||++||+.|.+.| .+|+|+||.+.+||.
T Consensus         1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGN   38 (487)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGN   38 (487)
T ss_pred             CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf             96898427688999999986468763787057523226


No 124
>PRK07121 hypothetical protein; Validated
Probab=98.98  E-value=2e-09  Score=87.12  Aligned_cols=41  Identities=37%  Similarity=0.490  Sum_probs=38.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||||||+|.||++||++|++.|++|+||||.+.+||+...
T Consensus        21 ~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~   61 (491)
T PRK07121         21 ADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATAL   61 (491)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             69899896799999999999889928999548999950888


No 125
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.98  E-value=1.2e-09  Score=88.66  Aligned_cols=40  Identities=40%  Similarity=0.578  Sum_probs=37.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||||||+| ||++||+++++.|++|+||||.+.+||+...
T Consensus        17 ~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~~   56 (566)
T PRK12845         17 VDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (566)
T ss_pred             ECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf             497998846-9999999999889938999689999857787


No 126
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.95  E-value=2.4e-09  Score=86.55  Aligned_cols=41  Identities=39%  Similarity=0.515  Sum_probs=37.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE
Q ss_conf             319999898668999999998799399993799715025136
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI   44 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~   44 (466)
                      |||||||+| ||++||+.+++.|++|+|+||.+.+||+....
T Consensus        10 ~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~s   50 (515)
T PRK12837         10 VDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYS   50 (515)
T ss_pred             CCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHC
T ss_conf             397998906-99999999998799889997889888188745


No 127
>PRK10015 hypothetical protein; Provisional
Probab=98.93  E-value=2.6e-10  Score=93.54  Aligned_cols=140  Identities=20%  Similarity=0.257  Sum_probs=70.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH--------CCEEC
Q ss_conf             3319999898668999999998799399993799715025136673709899999999999986675--------58164
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGD--------LGINI   73 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~--------~g~~~   73 (466)
                      +||||||||||||++||.+|++.|++|+||||.+..|.-.+--|.+..++|-   +++-.....++.        +.+-.
T Consensus         5 ~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgvl~~~~le---~liP~~~~~aP~er~V~~~~~~~l~   81 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLE---AIIPGFAASAPVERKVTREKISFLT   81 (429)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECHHHHH---HHCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf             1588999968899999999987799199996788799855126374162788---8688964479852158987899987


Q ss_pred             C--CCCCCHHHH---HHHHHHH---HHHHHHHHHHHHHCCCEEEEEEEEE---ECCCCCCC-CCCCCCCCCCCCEEECCC
Q ss_conf             7--753289999---9999999---9987777787640043101100111---00222102-357521123221000046
Q gi|254781053|r   74 A--SCHLDLKKM---MSYKKSI---VESNTQGINFLLKKNKIITYHGSAR---IVSNNKIL-VKGSSSEETIEAKNIVIA  141 (466)
Q Consensus        74 ~--~~~~d~~~~---~~~~~~~---v~~~~~~~~~~~~~~~V~~~~g~a~---~~~~~~v~-V~~~~~~~~i~ad~iviA  141 (466)
                      .  ...+++...   +......   ...+..-+....++.|++++.|...   +.+..+|. |.+  ++..++++.+|+|
T Consensus        82 ~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~t--g~~~l~A~vVI~A  159 (429)
T PRK10015         82 EESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA--GDDILEANVVILA  159 (429)
T ss_pred             CCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEC--CCCEEEEEEEEEE
T ss_conf             89806667656786766778659899999999999999759999779589999962998999987--9826886589981


Q ss_pred             CCCCC
Q ss_conf             76652
Q gi|254781053|r  142 TGSEA  146 (466)
Q Consensus       142 TGs~p  146 (466)
                      -|.+.
T Consensus       160 dGvns  164 (429)
T PRK10015        160 DGVNS  164 (429)
T ss_pred             CCCCH
T ss_conf             56227


No 128
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=98.91  E-value=8.6e-09  Score=82.51  Aligned_cols=132  Identities=27%  Similarity=0.406  Sum_probs=72.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEEEEECCCCHHHHHHHHHHHHHH-------HHHHHHCCEEC--
Q ss_conf             1999989866899999999879939999-3799715025136673709899999999999-------98667558164--
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLNIGCIPSKALLHASEMYSHI-------AKEAGDLGINI--   73 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lI-E~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~-------~~~~~~~g~~~--   73 (466)
                      ||+|||||+||..||+.++++|.+|+|| .+.+    +|-.-.|-||.--+...++.+++       .+.+...++.+  
T Consensus         1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~----~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~   76 (391)
T pfam01134         1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTD----TIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRM   76 (391)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC----CCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             979999878999999999868996899973424----3158865655687530439999987258999999997545653


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCCCC
Q ss_conf             ----775328999999999999987777787640-043101100111-0-0222102-357521123221000046766
Q gi|254781053|r   74 ----ASCHLDLKKMMSYKKSIVESNTQGINFLLK-KNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIATGS  144 (466)
Q Consensus        74 ----~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~-~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviATGs  144 (466)
                          ..+.+.-.+....++.+    ...+...++ ..+++++++... + .+++++. |...++ +.+.++.+|||||.
T Consensus        77 LN~skGpAv~a~R~q~Dr~~y----~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g-~~i~a~~vIltTGT  150 (391)
T pfam01134        77 LNTSKGPAVRALRAQVDRDLY----SKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDG-EEYKAKAVVIATGT  150 (391)
T ss_pred             HCCCCCCCCCCCHHHHHHHHH----HHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCC-CEEECCEEEEECCC
T ss_conf             044678766685899879999----999999997599939995464003026995999993799-78514459993156


No 129
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288    L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.86  E-value=4.2e-09  Score=84.78  Aligned_cols=34  Identities=35%  Similarity=0.511  Sum_probs=32.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9331999989866899999999879939999379
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      |+.||+|||+|.|||++|+.+.+.+.+|+||-|.
T Consensus         1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~   34 (546)
T TIGR00551         1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKA   34 (546)
T ss_pred             CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             9635999752089999998533268637897587


No 130
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.86  E-value=1.9e-08  Score=79.96  Aligned_cols=52  Identities=25%  Similarity=0.315  Sum_probs=38.5

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             12222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ...+.+.+++.|++++.+++|++++..++++..+.+  ++  ..+.+|.|++|+|-
T Consensus       204 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~V~t--~~--g~i~ad~vV~AaGa  255 (416)
T PRK00711        204 TQRLAALAEQLGVKFRFNTPVDGLLVEGGRITGVQT--GG--GVITADAYVVALGS  255 (416)
T ss_pred             HHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEC--CC--CEEEEEEEEEECCH
T ss_conf             999999998538862002315899984998998853--89--55750169993374


No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.85  E-value=4.1e-08  Score=77.54  Aligned_cols=135  Identities=26%  Similarity=0.462  Sum_probs=69.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCH-----H-HHHHHHHHHH-HHHHHHHHCCEE
Q ss_conf             93319999898668999999998799399993799-71502513667370-----9-8999999999-999866755816
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK-TYGGTCLNIGCIPS-----K-ALLHASEMYS-HIAKEAGDLGIN   72 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~-~~GGtC~~~GCiPs-----K-~l~~~a~~~~-~~~~~~~~~g~~   72 (466)
                      ++|||+|||||.||..||..+++.|.+++||--.. .+| .   --|-||     | .|++--..+. .+.+.+..-++.
T Consensus         5 ~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig-~---msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq   80 (621)
T PRK05192          5 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG-Q---MSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQ   80 (621)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE-E---EECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             879889989757999999999967996799965813115-8---604520367216576668775368999999887616


Q ss_pred             C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEEE-E-CCCCCCC-CCCCCCCCCCCCEEECCCC
Q ss_conf             4------77532899999999999998777778764-0043101100111-0-0222102-3575211232210000467
Q gi|254781053|r   73 I------ASCHLDLKKMMSYKKSIVESNTQGINFLL-KKNKIITYHGSAR-I-VSNNKIL-VKGSSSEETIEAKNIVIAT  142 (466)
Q Consensus        73 ~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a~-~-~~~~~v~-V~~~~~~~~i~ad~iviAT  142 (466)
                      +      ..+.+--.+.+..++..    ...+...+ ...+++++++... + +++++|. |....+ ..+.++.+||+|
T Consensus        81 ~r~LN~sKGpAv~~~RaQ~Dr~~Y----~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g-~~i~a~~vvltt  155 (621)
T PRK05192         81 FRMLNTSKGPAVRAPRAQADRKLY----RAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDG-LEFRAKAVVLTT  155 (621)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCC-EEEEEEEEEEEC
T ss_conf             876158888300673988859999----999999996499978998145799987999999996687-099852699831


Q ss_pred             CC
Q ss_conf             66
Q gi|254781053|r  143 GS  144 (466)
Q Consensus       143 Gs  144 (466)
                      |.
T Consensus       156 GT  157 (621)
T PRK05192        156 GT  157 (621)
T ss_pred             CC
T ss_conf             56


No 132
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.85  E-value=5e-08  Score=76.92  Aligned_cols=40  Identities=45%  Similarity=0.683  Sum_probs=37.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             1999989866899999999879939999379971502513
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      ||||||+|.||++||++|++.|++|+||||.+.+||++..
T Consensus         1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~   40 (401)
T pfam00890         1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAW   40 (401)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             9899988699999999999789948999789999976888


No 133
>PRK11445 putative oxidoreductase; Provisional
Probab=98.84  E-value=1.5e-08  Score=80.79  Aligned_cols=48  Identities=42%  Similarity=0.551  Sum_probs=37.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE-----EEEECCCCHHHH
Q ss_conf             331999989866899999999879939999379971502-----513667370989
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT-----CLNIGCIPSKAL   52 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt-----C~~~GCiPsK~l   52 (466)
                      +||||||||||||-+||..|++. .+|+|||+....+..     |-  |++|.+++
T Consensus         1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCG--G~I~~~a~   53 (348)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCG--GLLAPDAQ   53 (348)
T ss_pred             CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC--CCCCHHHH
T ss_conf             99799989788999999998268-9889998135656799988786--87197289


No 134
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.81  E-value=9e-09  Score=82.35  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      ||+|||+|.||+++|+.|++. .+|+|+-|.+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~   40 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL   40 (518)
T ss_pred             CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCC
T ss_conf             589988759999999737777-84799957778


No 135
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.80  E-value=2.8e-07  Score=71.50  Aligned_cols=35  Identities=37%  Similarity=0.518  Sum_probs=33.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             31999989866899999999879939999379971
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      |||+|||||..|+++|.+|+++|++|++||++..-
T Consensus         1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             92999993299999999999789949999899999


No 136
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.79  E-value=3.8e-09  Score=85.05  Aligned_cols=226  Identities=23%  Similarity=0.268  Sum_probs=109.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCC
Q ss_conf             9331999989866899999999879--93999937997150251366737098999999999999866755816477532
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHL   78 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~   78 (466)
                      |+|||+|||||.-|.+.|.+|++++  ++|+|+||...+|       |--|+   +++.+++.        |+.....  
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-------~~sS~---~NSgviHa--------g~~y~p~--   61 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-------QESSS---NNSGVIHA--------GLYYTPG--   61 (429)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-------CCCCC---CCCCCEEC--------CCCCCCC--
T ss_conf             8322999897389899999999738896599997057653-------33456---76534425--------5448985--


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCC-----C
Q ss_conf             89999999999999877777876400431011001110022210235752112322100004676652-44457-----6
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEA-SGLPG-----M  152 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p-~~iP~-----~  152 (466)
                      +++.-+..  . .   ......+.+..++.+                       ....++++|+|-.- ..++.     .
T Consensus        62 slka~l~~--~-g---~~~~~~~~kq~~~~f-----------------------~~~g~l~vA~~e~e~~~L~~l~~~~~  112 (429)
T COG0579          62 SLKAKLCV--A-G---NINEFAICKQLGIPF-----------------------INCGKLSVATGEEEVERLEKLYERGK  112 (429)
T ss_pred             CHHHHHHH--H-H---HHHHHHHHHHHCCCC-----------------------CCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf             51339999--9-9---999999999849861-----------------------23680899978277899999999886


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65321002453057411111133321--0123445433201322012201110000111221222211222222222222
Q gi|254781053|r  153 SIDFDEQVIVSSTGALSFSSVPKNLL--VIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGM  230 (466)
Q Consensus       153 ~~~~~~~~~~t~~~~~~l~~~P~~iv--IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV  230 (466)
                      .........++-+++.+++  |. +.  ++|+         .+..   .-+++...         ++...+.+.+.++|+
T Consensus       113 ~ngv~~~~~ld~~~i~~~e--P~-l~~~~~aa---------l~~p---~~giV~~~---------~~t~~l~e~a~~~g~  168 (429)
T COG0579         113 ANGVFDLEILDKEEIKELE--PL-LNEGAVAA---------LLVP---SGGIVDPG---------ELTRALAEEAQANGV  168 (429)
T ss_pred             HCCCCCEEECCHHHHHHHC--CC-CCCCCEEE---------EECC---CCCEECHH---------HHHHHHHHHHHHCCC
T ss_conf             5798614426999998629--65-44365146---------8757---77507689---------999999999997697


Q ss_pred             CCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEE
Q ss_conf             23220023442014687216999721332110000023204531210367840000126764223337763330
Q gi|254781053|r  231 NFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQTS  304 (466)
Q Consensus       231 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~Ts  304 (466)
                      ++++|++|+.++..++++.+.. ..+|+.. ++++.|+.+.|--..  .| +..+|+..+-.+++.--+|+...
T Consensus       169 ~i~ln~eV~~i~~~~dg~~~~~-~~~g~~~-~~ak~Vin~AGl~Ad--~l-a~~~g~~~~~~~~P~~G~y~~~~  237 (429)
T COG0579         169 ELRLNTEVTGIEKQSDGVFVLN-TSNGEET-LEAKFVINAAGLYAD--PL-AQMAGIPEDFKIFPVRGEYLVLD  237 (429)
T ss_pred             EEEECCEEEEEEEECCCEEEEE-ECCCCEE-EEEEEEEECCCHHHH--HH-HHHHCCCCCCCCCCCCEEEEEEC
T ss_conf             8993483647899279659998-3479678-995689989745179--99-99728986445275010799976


No 137
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.79  E-value=2.6e-07  Score=71.73  Aligned_cols=48  Identities=33%  Similarity=0.454  Sum_probs=38.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC-CCEEEEEECCCCH
Q ss_conf             33199998986689999999987--993999937997-1502513667370
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT-YGGTCLNIGCIPS   49 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~-~GGtC~~~GCiPs   49 (466)
                      ..||+|||||..|+++|.+|+++  |.+|+|+|++.. .|.+--|-||+.+
T Consensus        24 ~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGRNgG~~~~   74 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT   74 (460)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             551999994399999999999748999889994896156556654451567


No 138
>PRK06184 hypothetical protein; Provisional
Probab=98.77  E-value=8.9e-09  Score=82.39  Aligned_cols=139  Identities=20%  Similarity=0.213  Sum_probs=69.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC---C-EEC
Q ss_conf             3319999898668999999998799399993799715----0251366737098999999999999866755---8-164
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----GTCLNIGCIPSKALLHASEMYSHIAKEAGDL---G-INI   73 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~---g-~~~   73 (466)
                      .+||+||||||+|+++|+.|+++|.+|+|||+.+..-    ..+++..   |--+++...+...+......+   . +..
T Consensus         6 tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~r---t~eil~~lGl~d~i~~~~~~~~~~~~~~~   82 (503)
T PRK06184          6 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPR---TQEVFDDLGVLDRVVAAGGLYPPMRIYRD   82 (503)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCCEEEEEC
T ss_conf             579899990999999999999779989999489998868858987899---99999987897899843576752499968


Q ss_pred             CCC------------CCC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCC
Q ss_conf             775------------328--99999999999998777778764004310110011--100-222--10235752112322
Q gi|254781053|r   74 ASC------------HLD--LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN--KILVKGSSSEETIE  134 (466)
Q Consensus        74 ~~~------------~~d--~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~  134 (466)
                      ...            ..+  +...+-.-+..   +...+...+...++++..|..  .|. ++.  ++.+...++.++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~---le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~  159 (503)
T PRK06184         83 DGSVVESDMMHHLKPTPDEPYHLPLMVPQWR---TEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEETVR  159 (503)
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCEEEECHHH---HHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEE
T ss_conf             9705651024334666676535257722799---9999999998679869947668899981998999998599718999


Q ss_pred             CEEECCCCCCCC
Q ss_conf             100004676652
Q gi|254781053|r  135 AKNIVIATGSEA  146 (466)
Q Consensus       135 ad~iviATGs~p  146 (466)
                      ++++|=|=|++.
T Consensus       160 a~ylVGaDGa~S  171 (503)
T PRK06184        160 ARYLVGADGGRS  171 (503)
T ss_pred             EEEEECCCCCCH
T ss_conf             877741577774


No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.76  E-value=1e-07  Score=74.62  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |||+||||||+|+++|+.|+++|.+|.|||+.+.
T Consensus        13 ~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~   46 (554)
T PRK06183         13 TDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPT   46 (554)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             8889999598999999999977999999918999


No 140
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.76  E-value=5.4e-08  Score=76.68  Aligned_cols=101  Identities=22%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCC------------CCEE
Q ss_conf             1122222222222223220023442014687216999721332110000023204531210367------------8400
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGL------------GLEE  284 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l------------~Le~  284 (466)
                      +.+.+...++..|.-...+.+|.+.+-..+.+...++. +.....+.+|..++|+|.-= +++|            +|+-
T Consensus       260 l~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr-n~~diP~~a~~~VLAsGsff-skGLvae~d~I~EPIf~ldi  337 (421)
T COG3075         260 LHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR-NHADIPLRADFYVLASGSFF-SKGLVAERDKIYEPIFDLDI  337 (421)
T ss_pred             HHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEEEC-CCCCCCCCHHHEEEECCCCC-CCCCHHHHHHHHCCHHHCCC
T ss_conf             89999999997286672587213246427868898703-45657777457266136511-25302002323040021111


Q ss_pred             EEC----CCCCC----------CCCCCCCCCEEE-----CCCCEEECCCCCCCC
Q ss_conf             001----26764----------223337763330-----268487024333543
Q gi|254781053|r  285 IGI----NIDHR----------GCIEIGGQFQTS-----ISTIYAIGDVVRGPM  319 (466)
Q Consensus       285 ~gi----~~~~~----------G~I~vd~~~~Ts-----~p~IyA~GDv~g~~~  319 (466)
                      ...    +....          =.+.+|+++|-+     ..|.||+|-|.|++.
T Consensus       338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~AiGavlgGfd  391 (421)
T COG3075         338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFD  391 (421)
T ss_pred             CCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             268505542010235887267728112555371311067888999877751876


No 141
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.76  E-value=4.7e-08  Score=77.17  Aligned_cols=40  Identities=33%  Similarity=0.481  Sum_probs=35.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEE
Q ss_conf             319999898668999999998799399993799--7150251
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCL   42 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~   42 (466)
                      .||||||+|.||++||+.+++.|++|+||||.+  ..||+..
T Consensus         5 VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~   46 (456)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR   46 (456)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHH
T ss_conf             888999988999999999998799099998327778880305


No 142
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.74  E-value=3.8e-07  Score=70.54  Aligned_cols=52  Identities=23%  Similarity=0.359  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             112222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +...+.+.+++.|++++.+++|++++..+++..|  ...++   ++.+|.|++|+|-
T Consensus       149 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v--~t~~g---~i~a~~VV~a~G~  200 (309)
T pfam01266       149 LLRALARAAEALGVEILEGTEVTGLEREGGGVTV--ETADG---EIRADKVVNAAGA  200 (309)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEE--EECCC---EECCCEEEECCCH
T ss_conf             3679999998779699917689999998999999--98997---0858999997774


No 143
>PRK12839 hypothetical protein; Provisional
Probab=98.72  E-value=1.7e-08  Score=80.38  Aligned_cols=43  Identities=44%  Similarity=0.646  Sum_probs=39.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
Q ss_conf             3199998986689999999987993999937997150251366
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG   45 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G   45 (466)
                      |||||||+|.||++||+++++.|++|+||||.+.+||+....|
T Consensus        10 ~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~sg   52 (574)
T PRK12839         10 YDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWSG   52 (574)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC
T ss_conf             5789989689999999999988992899968999984355627


No 144
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.71  E-value=2.4e-08  Score=79.25  Aligned_cols=38  Identities=32%  Similarity=0.556  Sum_probs=35.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             33199998986689999999987993999937997150
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      +||||||||||||.+||.+|++.|++|+|+||++..|.
T Consensus         5 ~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~   42 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA   42 (428)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             57789999688999999999878990999967888998


No 145
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69  E-value=2.9e-08  Score=78.71  Aligned_cols=56  Identities=29%  Similarity=0.344  Sum_probs=43.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             22112222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ..+.+.+.+.+++.|++|+++++|++|...+++ .+++...++  ..+++|.|+.....
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~-g~~~~~~~g--~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGK-GVGVRTSDG--ENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCC-EEEEEECCC--CEEECCEEEECCCH
T ss_conf             999999999999749399678713599971890-589980676--07514689986887


No 146
>PRK08244 hypothetical protein; Provisional
Probab=98.69  E-value=5.1e-08  Score=76.87  Aligned_cols=140  Identities=19%  Similarity=0.272  Sum_probs=72.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEECC-
Q ss_conf             93319999898668999999998799399993799715----0251366737098999999999999866755-81647-
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----GTCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINIA-   74 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~~-   74 (466)
                      |++||+|||+||+|+++|+.|+++|.+|+|||+.+..-    ..+++.   .|-.+++...+...+.+..... ++... 
T Consensus         1 m~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~---rt~eil~~~Gl~~~l~~~g~~~~~~~~~~   77 (494)
T PRK08244          1 MKTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHP---RTLELLEMRGLLERFLEKGRKLPSGHFAG   77 (494)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCH---HHHHHHHHCCCHHHHHHHCEECCCCEEEC
T ss_conf             998999999478999999999977999999908999888998746089---99999998789889885210765636814


Q ss_pred             -CCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCCCEEECCC
Q ss_conf             -75328999999-------99999998777778764004310110011--100-222--102357521123221000046
Q gi|254781053|r   75 -SCHLDLKKMMS-------YKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNN--KILVKGSSSEETIEAKNIVIA  141 (466)
Q Consensus        75 -~~~~d~~~~~~-------~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~ad~iviA  141 (466)
                       ...+++..+-.       .-+...   ..-+...++..++++..++-  .|. +..  ++.+...++.++++++++|=|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~Q~~l---e~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylVGa  154 (494)
T PRK08244         78 LDTRLDFSALDTRANYTLFLPQAET---EKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAVGA  154 (494)
T ss_pred             CCCCEECCCCCCCCCCEEEECHHHH---HHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEEEE
T ss_conf             4330320335778882698155999---9999999984798899686899999869978999990897689987799982


Q ss_pred             CCCCC
Q ss_conf             76652
Q gi|254781053|r  142 TGSEA  146 (466)
Q Consensus       142 TGs~p  146 (466)
                      =|++.
T Consensus       155 DGa~S  159 (494)
T PRK08244        155 DGAGS  159 (494)
T ss_pred             CCCCC
T ss_conf             46672


No 147
>PRK08774 consensus
Probab=98.69  E-value=1.5e-07  Score=73.55  Aligned_cols=35  Identities=34%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93--319999898668999999998799399993799
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+  |||+||||||+|+++|+.|++.|.+|+|||+.+
T Consensus         1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~   37 (402)
T PRK08774          1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATP   37 (402)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             9899878999916999999999966899789993799


No 148
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.69  E-value=9.9e-08  Score=74.78  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCC
Q ss_conf             222232200234420146872169997213321100000232045312103678400001267
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINID  290 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~  290 (466)
                      .+|+++.++++++++..++++.+++... +++.++.++.++-|-|....+.    +.+|++..
T Consensus       134 ~~v~~~~~~~v~~~~~~~~~v~v~l~~~-~~~~~i~a~llIgaDG~~S~VR----~~lgi~~~  191 (413)
T PRK07364        134 PNITWLCPAQVLSVEYGEHQATVTLEIA-GQLQTLQSKLVVAADGARSPIR----QAAGIKTD  191 (413)
T ss_pred             CCCEEEECCEEEEEEECCCEEEEEEECC-CCEEEEEEEEEEEECCCCCHHH----HHHCCCCC
T ss_conf             9948982877999997698369999829-9138998568999318885003----54068765


No 149
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.67  E-value=2.5e-08  Score=79.10  Aligned_cols=44  Identities=34%  Similarity=0.513  Sum_probs=39.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEEE
Q ss_conf             93319999898668999999998799399993799--715025136
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLNI   44 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~~   44 (466)
                      |-|||||||+|.||++||++|++.|+||+|+||++  .+||++...
T Consensus         1 ~e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s   46 (549)
T PRK12834          1 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS   46 (549)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf             9999899896789999999999879927999668888988467761


No 150
>PRK07608 hypothetical protein; Provisional
Probab=98.65  E-value=4e-08  Score=77.61  Aligned_cols=36  Identities=44%  Similarity=0.627  Sum_probs=34.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             933199998986689999999987993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |+|||+||||||+|+++|+.|++.|.+|+|||+.+.
T Consensus         4 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~   39 (389)
T PRK07608          4 MKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPP   39 (389)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999889999068999999999837998899958998


No 151
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64  E-value=1.6e-07  Score=73.33  Aligned_cols=35  Identities=46%  Similarity=0.698  Sum_probs=33.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             31999989866899999999879939999379971
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      |||+||||||+|+++|+.|++.|.+|+|||+.+..
T Consensus         6 ~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~   40 (386)
T PRK07494          6 TDIAVSGGGPAGLAAAIALASAGASVALVAPAPPY   40 (386)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             86899990689999999998789988999579988


No 152
>PRK06185 hypothetical protein; Provisional
Probab=98.63  E-value=2.3e-07  Score=72.10  Aligned_cols=34  Identities=35%  Similarity=0.593  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .||+||||||||+++|+.|++.|.+|+++|+.+.
T Consensus         7 tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~   40 (409)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (409)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9989999188999999999977999999918999


No 153
>PRK06126 hypothetical protein; Provisional
Probab=98.60  E-value=9.4e-08  Score=74.94  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .||+||||||+|+++|+.|+++|.+|+|||+.+.
T Consensus         8 ~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~   41 (545)
T PRK06126          8 TPVLIVGGGPVGLALALELGRRGVDSILVERGDG   41 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9989999498999999999987999999889999


No 154
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108   Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor .   This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.60  E-value=8.9e-08  Score=75.11  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             CEEEECCCHHHHHHHHHHH--HCCCCEEEEECCCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECC------
Q ss_conf             1999989866899999999--87993999937997-15025136673709899999999999986675581647------
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAA--QLKNKVAIIEKEKT-YGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIA------   74 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~--~~G~~V~lIE~~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~------   74 (466)
                      |++||||||||+.-|.+++  +.|++|.+||..+. .+|+- |||.=-+ -|-...+   ......-..-|+..      
T Consensus         1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~-tyg~w~~-dl~~~~h---awl~~l~~~~W~~~~~y~~~   75 (419)
T TIGR01790         1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNN-TYGVWDD-DLSDLGH---AWLADLVEHRWSDAYEYRFP   75 (419)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCCCCC-CHHHHHH---HHHHHHHCCCCCCEEEECCC
T ss_conf             97887477578999999997505871898678887677687-4421222-2327899---99998841638980688387


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEE-ECCC-CCCC-CCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             7532899999999999998777778764004-3101100111-0022-2102-35752112322100004676652
Q gi|254781053|r   75 SCHLDLKKMMSYKKSIVESNTQGINFLLKKN-KIITYHGSAR-IVSN-NKIL-VKGSSSEETIEAKNIVIATGSEA  146 (466)
Q Consensus        75 ~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~-~V~~~~g~a~-~~~~-~~v~-V~~~~~~~~i~ad~iviATGs~p  146 (466)
                      +...++..--...+  ..++.+.+...+... |+.++.+++- +... .... |.. ++.++|+++-||-|+|.+|
T Consensus        76 ~~~~~L~~~Y~~~~--~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~-~~g~~i~Ar~V~Da~G~~~  148 (419)
T TIGR01790        76 EEPIKLGRAYGSVD--RAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVEC-AGGQRIQARLVIDARGFKP  148 (419)
T ss_pred             CCCHHCCCCCEEEC--HHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEC-CCCEEEEEEEEEECCCCCC
T ss_conf             34301056650001--5899999998620037613301356666544055111442-8973784007883257776


No 155
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=98.57  E-value=6.2e-07  Score=69.00  Aligned_cols=59  Identities=17%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222322002344201468721699972-13321100000232045312103
Q gi|254781053|r  220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+.+.+++.+++++++.++++++.+++++.+.+.+. +++..++++|.|+-|-|....+.
T Consensus       106 ~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgADG~~S~vR  165 (349)
T pfam01494       106 ILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVR  165 (349)
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHH
T ss_conf             999999857998996617877520599437999845899558999768841577764899


No 156
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.57  E-value=6.1e-07  Score=69.05  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             31999989866899999999879939999379971
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      .+|+||||||||+++|+.|++.|.+|+|+|+.+.+
T Consensus         5 ~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~   39 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             84999897889999999999789999999179988


No 157
>PRK08132 hypothetical protein; Provisional
Probab=98.56  E-value=1.2e-07  Score=74.24  Aligned_cols=35  Identities=40%  Similarity=0.549  Sum_probs=32.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             33199998986689999999987993999937997
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      +.||+|||+||+|+++|+.|+++|.+++|||+.+.
T Consensus        23 ~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~   57 (549)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (549)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             69999999257999999999987999999959999


No 158
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777    This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=98.56  E-value=7.2e-08  Score=75.77  Aligned_cols=34  Identities=44%  Similarity=0.687  Sum_probs=32.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |||||||+||||-+||.+|++.|.+|+|+|+.+.
T Consensus         1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~   34 (343)
T TIGR02032         1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSF   34 (343)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_conf             9389982774689999999956973889850450


No 159
>PRK09126 hypothetical protein; Provisional
Probab=98.52  E-value=1.4e-07  Score=73.58  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222232200234420146872169997213321100000232045312103
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..+|++++++++++++..++++.+++.+  +  .++.+|.|+-|-|....+.
T Consensus       123 ~~~v~~~~~~~v~~~~~~~~~v~v~~~~--g--~~i~a~llVgADG~~S~vR  170 (392)
T PRK09126        123 QPGIEILTGHRVKAVTHSDDGAQVTLAN--G--RRLTARLLVAADSRFSATR  170 (392)
T ss_pred             CCCCEEECCCEEEEEEECCCEEEEEECC--C--CEEEEEEEEEECCCCCHHH
T ss_conf             8996998698889999759805999858--9--8888779998068886111


No 160
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in  Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.52  E-value=1.3e-07  Score=73.98  Aligned_cols=47  Identities=32%  Similarity=0.503  Sum_probs=42.5

Q ss_pred             CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEECCCCCCEEEEEECCCC
Q ss_conf             331999989866899999-99987993999937997150251366737
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAI-KAAQLKNKVAIIEKEKTYGGTCLNIGCIP   48 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~-~~~~~G~~V~lIE~~~~~GGtC~~~GCiP   48 (466)
                      |||.+|||||-+|.-+|- .|+++|+||+||||...+||.|=-.=|--
T Consensus         1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~   48 (390)
T TIGR00031         1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDEN   48 (390)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             951799866367799999999970998899973066587344422488


No 161
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.52  E-value=2.1e-07  Score=72.37  Aligned_cols=44  Identities=39%  Similarity=0.607  Sum_probs=38.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC
Q ss_conf             31999989866899999999879939999379971502513667
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGC   46 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GC   46 (466)
                      -||+|+|+||+|++||.+|++.|+||+++|+.-.+||=|..-|-
T Consensus        26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGGm   69 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGGM   69 (257)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHH
T ss_conf             68899888827999999998689659999713468886313000


No 162
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.51  E-value=1.7e-07  Score=73.04  Aligned_cols=35  Identities=51%  Similarity=0.648  Sum_probs=32.8

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93-319999898668999999998799399993799
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+ |||+||||||+|+.+|+.|++.|.+|+|||+.+
T Consensus         1 M~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFE   36 (384)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             981899999924999999999995799599996899


No 163
>PRK07208 hypothetical protein; Provisional
Probab=98.51  E-value=2.2e-07  Score=72.29  Aligned_cols=41  Identities=29%  Similarity=0.498  Sum_probs=38.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE
Q ss_conf             33199998986689999999987993999937997150251
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL   42 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~   42 (466)
                      |=+|+||||||+|++||.+|++.|++|+|+|+++.+||.|-
T Consensus         3 ~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vGGl~~   43 (474)
T PRK07208          3 KKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEVGGISR   43 (474)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf             87599989768999999999868997599978998754477


No 164
>PRK07588 hypothetical protein; Provisional
Probab=98.50  E-value=1.5e-07  Score=73.44  Aligned_cols=54  Identities=7%  Similarity=0.159  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             22222222222322002344201468721699972133211000002320453121036
Q gi|254781053|r  221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      +.+.++ .+++++++.++++++..++++.+++.++  +  +.++|.|+-|-|....+..
T Consensus       109 L~~~~~-~~v~v~~g~~v~~i~~~~dgV~v~f~dG--~--~~~~DlvVGADGi~S~vR~  162 (391)
T PRK07588        109 IYTTIE-GQVETIFDDSIATIDEHRDGVRLTLERG--T--PRDFDLVIGADGLHSHVRR  162 (391)
T ss_pred             HHHHCC-CCCEEEECCEEEEEEECCCEEEEEECCC--C--EEEEEEEEECCCCCCHHHH
T ss_conf             997514-4878997999999996299589998799--8--8887599954876407778


No 165
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA    [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48  E-value=4.6e-07  Score=69.95  Aligned_cols=130  Identities=25%  Similarity=0.409  Sum_probs=64.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC----------CCCCEEEEEECCCCHHH-HHHHHHHH-HHHHHHHHHCC
Q ss_conf             31999989866899999999879939999379----------97150251366737098-99999999-99998667558
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE----------KTYGGTCLNIGCIPSKA-LLHASEMY-SHIAKEAGDLG   70 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----------~~~GGtC~~~GCiPsK~-l~~~a~~~-~~~~~~~~~~g   70 (466)
                      |||+|||||.||..||+.++++|.+++|+--+          +.+||        |-|- +.+--..+ ..+.+.....+
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG--------~~KG~lvrEIDALGG~Mg~~~D~~~   76 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGG--------PGKGHLVREIDALGGLMGKAADKAG   76 (621)
T ss_pred             CCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCC--------CCCCEEEEEEHHCCCHHHHHHHHCC
T ss_conf             85699899842047777664369807999737774465035644577--------3553267752412455777666507


Q ss_pred             EEC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--ECCCCC-CC-CCCCCCCCCCCCEEECC
Q ss_conf             164------775328999999999999987777787640043101100111--002221-02-35752112322100004
Q gi|254781053|r   71 INI------ASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSAR--IVSNNK-IL-VKGSSSEETIEAKNIVI  140 (466)
Q Consensus        71 ~~~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~--~~~~~~-v~-V~~~~~~~~i~ad~ivi  140 (466)
                      +.+      ..|.+.-.+....+....+....   .+....+++++++.+.  ++.+.. +. |.+..+ ..|.++.+||
T Consensus        77 IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~---~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G-~~~~a~aVVl  152 (621)
T COG0445          77 IQFRMLNSSKGPAVRAPRAQADKWLYRRAMKN---ELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG-PEFHAKAVVL  152 (621)
T ss_pred             CCHHHCCCCCCCHHCCHHHHHHHHHHHHHHHH---HHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCC-CEEECCEEEE
T ss_conf             86533367776210450654428999999999---9854999552476667871337976899992787-8510687999


Q ss_pred             CCCC
Q ss_conf             6766
Q gi|254781053|r  141 ATGS  144 (466)
Q Consensus       141 ATGs  144 (466)
                      +||.
T Consensus       153 TTGT  156 (621)
T COG0445         153 TTGT  156 (621)
T ss_pred             EECC
T ss_conf             6334


No 166
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.48  E-value=1.3e-06  Score=66.60  Aligned_cols=56  Identities=18%  Similarity=0.240  Sum_probs=42.4

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+++.+|+++.++++.+++..++++.+++.  ++  .+++++.|+-|-|....+.
T Consensus       115 ~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~--~g--~~i~a~llIgaDG~~S~VR  170 (403)
T PRK07333        115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLA--DG--STLEARLLVAADGARSKLR  170 (403)
T ss_pred             HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCHHHH
T ss_conf             99999998289989858857899974980799978--99--8999869998348761325


No 167
>PRK08013 hypothetical protein; Provisional
Probab=98.47  E-value=2.3e-07  Score=72.10  Aligned_cols=35  Identities=40%  Similarity=0.516  Sum_probs=33.2

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93-319999898668999999998799399993799
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+ |||+||||||+|+++|+.|++.|.+|++||+..
T Consensus         1 M~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~   36 (400)
T PRK08013          1 MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRV   36 (400)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             996788999935999999999971899589991899


No 168
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.47  E-value=1.9e-07  Score=72.64  Aligned_cols=43  Identities=42%  Similarity=0.568  Sum_probs=37.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
Q ss_conf             3199998986689999999987993999937997150251366
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG   45 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G   45 (466)
                      -||+|+||||+|++||.+|++.|+||++||+.-.+||=|..-|
T Consensus        18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGG   60 (229)
T pfam01946        18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGG   60 (229)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf             6889988781799999999878985999964526888620201


No 169
>PRK07233 hypothetical protein; Provisional
Probab=98.39  E-value=5.2e-07  Score=69.56  Aligned_cols=55  Identities=18%  Similarity=0.148  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             22112222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ..+.+.+.+.|++.|.+|++|++|++|...++++.++..  +|  .++.+|.|++|+-.
T Consensus       197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~~--~g--~~~~ad~VI~a~p~  251 (430)
T PRK07233        197 GTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVET--DG--EEEAFDAVISTIPP  251 (430)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEEE--CC--CEEECCEEEECCCH
T ss_conf             999999999999759999979978899995998999997--99--49993999989998


No 170
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.37  E-value=5.2e-07  Score=69.53  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |++||+||||||+|+++|+.|++.|.+|+|||+.+
T Consensus         1 m~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~   35 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALEGSGLEVLLVDGGP   35 (405)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             99889999905999999999961899789995899


No 171
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.37  E-value=5.6e-07  Score=69.28  Aligned_cols=37  Identities=32%  Similarity=0.627  Sum_probs=35.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             9999898668999999998799399993799715025
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      |||||||.|||+||.+|+++|++|+|+|+.+.+||-|
T Consensus         1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~   37 (430)
T TIGR03467         1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRA   37 (430)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf             2998786899999999987899889994899881676


No 172
>KOG0029 consensus
Probab=98.37  E-value=6.4e-07  Score=68.90  Aligned_cols=38  Identities=29%  Similarity=0.450  Sum_probs=36.5

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             33199998986689999999987993999937997150
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      +++|+|||||.||++||.+|.+.|.+|++.|..+.+||
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029          15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             88389989857899999999975982599971477676


No 173
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727   This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=98.33  E-value=2.2e-06  Score=65.03  Aligned_cols=203  Identities=22%  Similarity=0.269  Sum_probs=96.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE-CCCCCCCHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816-47753289999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN-IASCHLDLKKM   83 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~-~~~~~~d~~~~   83 (466)
                      |+|||||-.|++.|.+|++.|++|+|+|+++..|+          ++=+.++.++.....      +. ..++=+++.  
T Consensus         1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~----------~AS~~AaGMLAP~aE------~~~~~~~~f~L~--   62 (357)
T TIGR02352         1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGG----------GASWAAAGMLAPVAE------VEYAEDPLFDLA--   62 (357)
T ss_pred             CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHH----------HHHHHHHHHHHHHCC------CCCCCCHHHHHH--
T ss_conf             97845318789999999974993899965860456----------778866433243266------746767478999--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCC-CEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999987777787640043101100111002221023575211-2322-100004676652444576653210024
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSE-ETIE-AKNIVIATGSEASGLPGMSIDFDEQVI  161 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~-~~i~-ad~iviATGs~p~~iP~~~~~~~~~~~  161 (466)
                          ..-.+...+..+.+-+..|+++.+     ....++.|..+..+ +.++ -+++.=++|-             .-..
T Consensus        63 ----~~S~~~yp~~~~~l~~~tg~~~~y-----~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~-------------~~~~  120 (357)
T TIGR02352        63 ----LESLRLYPEWLEALKELTGLDTGY-----RQCGTLVVAFDEDDVEKLRQLADLQSATGM-------------ELEW  120 (357)
T ss_pred             ----HHHHHHHHHHHHHHHHCCCCCCEE-----ECCCEEEEECCCCHHHHHHHHHHHHHHHCC-------------EEEE
T ss_conf             ----999997599999987317995127-----405258940787116888999999875286-------------0465


Q ss_pred             EEECCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             53057411111133-32101234454332013220122011100001112212222112222222222222322002344
Q gi|254781053|r  162 VSSTGALSFSSVPK-NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS  240 (466)
Q Consensus       162 ~t~~~~~~l~~~P~-~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~  240 (466)
                      ++.+.+..++  |. +==|.||=++           ..+.+|-          .+++.+.+.+.+++.|++++..+.|..
T Consensus       121 l~~~~~r~~E--P~L~~~~~~a~~~-----------p~d~~v~----------~r~l~~AL~~~~~~lGv~i~~~~~v~~  177 (357)
T TIGR02352       121 LSGRALRRLE--PYLSPGIRGAVYY-----------PDDAHVD----------PRELLKALVKALEKLGVEIIEEVEVQE  177 (357)
T ss_pred             CCHHHHHHHC--CCCCCCCCEEEEC-----------CCCCCCC----------CHHHHHHHHHHHHHCCCEEEECCCEEE
T ss_conf             0779999844--2524220334574-----------8652337----------189999999999856947986253356


Q ss_pred             HHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             2014687216999721332110000023204531
Q gi|254781053|r  241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                      ++....+..-..  +  ....+.+|.|++|.|.-
T Consensus       178 ~~~~~~~~~~~~--~--~~~~~~ad~vV~A~G~w  207 (357)
T TIGR02352       178 IEARGEKVTAVV--T--SSGDVQADQVVLAAGAW  207 (357)
T ss_pred             EECCCCEEEEEC--C--CCCCEECCEEEEECCCC
T ss_conf             432676698852--8--85426557479935733


No 174
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253   This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.31  E-value=5.5e-07  Score=69.37  Aligned_cols=37  Identities=46%  Similarity=0.777  Sum_probs=34.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC----CCCCE
Q ss_conf             31999989866899999999879939999379----97150
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE----KTYGG   39 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----~~~GG   39 (466)
                      |||+||||||+|-+||..|++.|.+|+||||+    ++=||
T Consensus         1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGG   41 (408)
T TIGR02023         1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGG   41 (408)
T ss_pred             CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCC
T ss_conf             96789816850689999998649748863024326588888


No 175
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.30  E-value=6.4e-07  Score=68.87  Aligned_cols=39  Identities=36%  Similarity=0.613  Sum_probs=34.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCE
Q ss_conf             9331999989866899999999879--93999937997150
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GG   39 (466)
                      |.-||+|+||||.||+||.++|+.|  +||+++|+.=.+||
T Consensus        20 ~e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GG   60 (283)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGG   60 (283)
T ss_pred             HHCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf             01066798789746689999984299806999851102689


No 176
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.28  E-value=1.3e-06  Score=66.60  Aligned_cols=34  Identities=38%  Similarity=0.607  Sum_probs=32.1

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             93--31999989866899999999879939999379
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      ||  |||+||||||+|+.+|+.|++.|.+|+|||+.
T Consensus         1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQ   36 (405)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             999876899991589999999998589978999379


No 177
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.28  E-value=1.3e-06  Score=66.62  Aligned_cols=54  Identities=15%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222222-222232200234420146872169997213321100000232045312103
Q gi|254781053|r  221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+++ .+|++++++++++++..++++.+++.+  +  +++.+|.|+-|-|....+.
T Consensus       118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~--g--~~i~a~lvVgADG~~S~vR  172 (395)
T PRK05732        118 LFALLDKAPGVTLHCPARVANVERTQDGVRVTLDD--G--ETLTARLLVAADGTHSALR  172 (395)
T ss_pred             HHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECC--C--CEEEECEEEEECCCCHHHH
T ss_conf             99988408996997698899999828927999879--9--8998379999289962544


No 178
>PRK06834 hypothetical protein; Provisional
Probab=98.27  E-value=1.4e-06  Score=66.38  Aligned_cols=139  Identities=20%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---CE--EEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEEC
Q ss_conf             93-31999989866899999999879939999379971---50--251366737098999999999999866755-8164
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY---GG--TCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINI   73 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~---GG--tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~   73 (466)
                      |- |||+|||+||+|+++|+.|+++|.+|+|||+.+..   +.  .+++.   .|--+++...+...+....... ....
T Consensus         1 M~~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~~l~~---rt~eil~~~Gl~d~~~~~g~~~~~~~~   77 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAGGLHA---RTLEVLDQRGIVDRFLAEGQVAQVTGF   77 (488)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHCCCCCCCCCC
T ss_conf             99898999893889999999999769999999689998776984847789---999999987998999842652111240


Q ss_pred             CCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             775328999999-------99999998777778764004310110011--10-022210235752112322100004676
Q gi|254781053|r   74 ASCHLDLKKMMS-------YKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEETIEAKNIVIATG  143 (466)
Q Consensus        74 ~~~~~d~~~~~~-------~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~~i~ad~iviATG  143 (466)
                      ....+|+...-.       ..+..+   ...+...+++.++++..|+-  .| .++..|.+...++ ++++++++|=|-|
T Consensus        78 ~~~~~~~~~~p~~~~~~~~~~Q~~l---E~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg-~ti~a~ylVGaDG  153 (488)
T PRK06834         78 AQIRLDISDFPTRHNYGLALRQNHI---ERILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDG-STLRAQYLVGCDG  153 (488)
T ss_pred             CCEECCHHHCCCCCCCEEEEEHHHH---HHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCC-CEEEEEEEEEECC
T ss_conf             1202567658777783788548999---99999999858997980888999998399689998898-2798758997067


Q ss_pred             CCC
Q ss_conf             652
Q gi|254781053|r  144 SEA  146 (466)
Q Consensus       144 s~p  146 (466)
                      ++.
T Consensus       154 a~S  156 (488)
T PRK06834        154 GRS  156 (488)
T ss_pred             CCC
T ss_conf             674


No 179
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=98.26  E-value=1e-06  Score=67.41  Aligned_cols=38  Identities=42%  Similarity=0.677  Sum_probs=35.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             31999989866899999999879939999379971502
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      -||+|+|+||+|++||.++++.|+||+++|+.-.+||-
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG   68 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG   68 (262)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCC
T ss_conf             26799876850578999998679649999730146876


No 180
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.26  E-value=4.8e-07  Score=69.78  Aligned_cols=42  Identities=40%  Similarity=0.477  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEE
Q ss_conf             933199998986689999999987993999937997150251
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCL   42 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~   42 (466)
                      +.|||+|||||..|.-.|..|+.+|++|+|+|+++.-.||-.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs   52 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS   52 (532)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf             577789989865469999999867984999954765676667


No 181
>PRK09897 hypothetical protein; Provisional
Probab=98.26  E-value=2.2e-05  Score=57.64  Aligned_cols=179  Identities=19%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCC-EEEEEECCCC------HHHHHHHH--------------H
Q ss_conf             9331999989866899999999879--9399993799715-0251366737------09899999--------------9
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYG-GTCLNIGCIP------SKALLHAS--------------E   57 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~G-GtC~~~GCiP------sK~l~~~a--------------~   57 (466)
                      || -|.|||+||.|+..-..|-+.+  ++++|+|+....| |       ||      |+.++.+.              .
T Consensus         1 mk-rIAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~G-------MPYs~e~ns~~mlaNIas~EIPpi~~t~~~W   72 (535)
T PRK09897          1 MK-KIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVG-------MPYSDEENSKMMLANIASIEIPPIYCTYLEW   72 (535)
T ss_pred             CC-EEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCC-------CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             95-079966786249999998646998269998215667789-------9868544558887503105588513569999


Q ss_pred             HHHHHHHHHHHCCEECCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEECC----CCCCCCCCCCCC
Q ss_conf             999999866755816477532--8999999999999987777787640043101-100111002----221023575211
Q gi|254781053|r   58 MYSHIAKEAGDLGINIASCHL--DLKKMMSYKKSIVESNTQGINFLLKKNKIIT-YHGSARIVS----NNKILVKGSSSE  130 (466)
Q Consensus        58 ~~~~~~~~~~~~g~~~~~~~~--d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~-~~g~a~~~~----~~~v~V~~~~~~  130 (466)
                      +..+.......||++-.+.+-  -+++++- -+-+.+++..-++ ..++.|+.+ ++-..+++|    ++.+.+....+.
T Consensus        73 L~~q~~~~L~~~~id~~~l~~rqflPRiLl-GeYl~~QF~~Lve-~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~  150 (535)
T PRK09897         73 LQKQEASHLQRYGVKKETLHDRQFLPRILL-GEYFRDQFLRLVD-QARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL  150 (535)
T ss_pred             HHHCCHHHHHHCCCCHHHCCCCCEEHHHHH-HHHHHHHHHHHHH-HHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCC
T ss_conf             873888789871998322641010048888-8999999999999-99865966999757666764436995599833788


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             2322100004676652444576653210024530--574111111333210123445433201322
Q gi|254781053|r  131 ETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSS--TGALSFSSVPKNLLVIGAGVIGLELGSVWT  194 (466)
Q Consensus       131 ~~i~ad~iviATGs~p~~iP~~~~~~~~~~~~t~--~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~  194 (466)
                      ....+|.+|||||-..+.   .. +. .+.++.|  -....-+..|-+|.|.|+...|+.-|-.++
T Consensus       151 ~~~~FD~vVIaTGH~WP~---~~-e~-~~~YF~SPw~~l~~a~ip~~~VgI~GSSLSAIDAa~ala  211 (535)
T PRK09897        151 PSETFDLAVIATGHVWPD---EE-EA-TRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVA  211 (535)
T ss_pred             CCCCCEEEEEECCCCCCC---CC-CC-CCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             764320799807987998---77-67-766678999736542578752776237657899999999


No 182
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.25  E-value=1.5e-06  Score=66.16  Aligned_cols=55  Identities=13%  Similarity=0.228  Sum_probs=40.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+.+.+.+.+|+++.++++++++.+++++.+++.  +|  .+++++.++-|-|....+.
T Consensus       118 ~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~--dg--~~i~a~lvVgaDG~~S~vR  172 (392)
T PRK08773        118 RLWAAVHAAGIQLHCPARVVELEQDADGVRLRLD--DG--SRLEAALAIAADGAASTLR  172 (392)
T ss_pred             HHHHHHHCCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH
T ss_conf             9999986089989748689999966985899977--99--7999889998378874767


No 183
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.24  E-value=9.9e-07  Score=67.49  Aligned_cols=264  Identities=15%  Similarity=0.187  Sum_probs=120.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
Q ss_conf             331999989866899999999879--939999379971502513667370989999999999998667558164775328
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLD   79 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d   79 (466)
                      +||||+||||.-|-+.+..|+++.  ++++|+||-+.++-...|       . |+.|...+. ..---+|-.+-.+..+|
T Consensus         4 ~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~-------~-wNNAgTgHa-a~cElNYTpe~~dg~i~   74 (489)
T pfam06039         4 KVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSN-------P-WNNAGTGHS-ALCELNYTPEGADGSID   74 (489)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCC-------C-CCCCCCHHH-HHHHHCCCCCCCCCCCC
T ss_conf             10299999628899999999975998748999814752555078-------8-665521000-21341488765688442


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             999999999999987777787640043101100111002--221023575211232210000467665244457665321
Q gi|254781053|r   80 LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD  157 (466)
Q Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~  157 (466)
                      .++.++....+- ..++....+. +.++.  ..--+|+.  ||-..|.+++.-+.++-++=-+..  . +.+|+++.   
T Consensus        75 i~KA~~IneqFe-~Srqfws~lv-~~g~l--~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~--~-~lF~~Me~---  144 (489)
T pfam06039        75 ISKAVKINEQFQ-ISRQFWAYLV-KEGVL--SNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQ--N-PLFEGMEY---  144 (489)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHH-HCCCC--CCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHC--C-CCCCCCEE---
T ss_conf             799999999999-9999999998-75898--9857850568815898776988999999998505--8-78677784---


Q ss_pred             CEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             002453057411111-1333210123445433201322012201110000111221222211222222222-22223220
Q gi|254781053|r  158 EQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNFQLN  235 (466)
Q Consensus       158 ~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i~~~  235 (466)
                            ++|.-.+++ .|   +++-|-.-.=.+|-....-|++|..=.            +.+.+.+.|++ .|++++++
T Consensus       145 ------seD~~~i~~w~P---Lv~~gR~~~e~vAat~~~~GTdVnFGa------------LT~~l~~~l~~~~~~~l~~~  203 (489)
T pfam06039       145 ------SEDPEKIKEWVP---LMMEGRDPDEPIAATRIDEGTDVNFGA------------LTRQLFKYLQQKPNVELQYN  203 (489)
T ss_pred             ------CCCHHHHHHHCC---CCCCCCCCCCCEEEEECCCCCCCCHHH------------HHHHHHHHHHHCCCEEEEEC
T ss_conf             ------479899986448---003797978855799448874011899------------99999999851898289927


Q ss_pred             HHHHHHHCCCCC-CEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEEC--CCCCCCCCCCCCCCEEECCCC
Q ss_conf             023442014687-21699972-13321100000232045312103678400001--267642233377633302684
Q gi|254781053|r  236 SKVSSVKKVKGK-AQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGI--NIDHRGCIEIGGQFQTSISTI  308 (466)
Q Consensus       236 ~~v~~i~~~~~~-~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi--~~~~~G~I~vd~~~~Ts~p~I  308 (466)
                      ++|+.+++.+++ ..|.+.+. .++..++.++.|++..|-..   ..-|.+.|+  -.+=.|+++--.+++|++|.|
T Consensus       204 ~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~s---L~LlQksgi~e~~~yggfPVsG~fl~~~np~~  277 (489)
T pfam06039       204 HEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGA---LPLLQKSGIPESKGYGGFPVSGQFLRCTNPEV  277 (489)
T ss_pred             CEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHH---HHHHHHCCCHHHCCCCCCCCCCEEEECCCHHH
T ss_conf             885345888999879999865789748998267998887577---89999819833236366775556885399899


No 184
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.24  E-value=1.6e-06  Score=65.92  Aligned_cols=58  Identities=17%  Similarity=0.247  Sum_probs=42.4

Q ss_pred             CCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             122222222222-2232200234420146872169997213321100000232045312103
Q gi|254781053|r  218 AAHCLKIMSKQG-MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       218 ~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+.+.+.+.+.+ |+++.+++++.++.+++.+.+++.. +|+  ++.+|.++-|-|....+.
T Consensus       107 ~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~-dG~--~~~a~llVgADG~~S~vR  165 (387)
T COG0654         107 LNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-DGE--TLDADLLVGADGANSAVR  165 (387)
T ss_pred             HHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEEC-CCE--EEECCEEEECCCCCHHHH
T ss_conf             99999998718982999577799988539737999903-991--997599998899876999


No 185
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.23  E-value=8.3e-08  Score=75.32  Aligned_cols=90  Identities=26%  Similarity=0.482  Sum_probs=66.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             33321012344543320132201220111000011122-------1--22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .||++|||+|+-|+-.|..|+++|.+||++++.+++-.       .  +++++.+.-.+.+++.||+|++|+.|-+    
T Consensus       143 gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~----  218 (472)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGK----  218 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCC----
T ss_conf             9989998977899999999986697589972577777546531788555358999999999857978990523187----


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCC-EEE
Q ss_conf             68721699972133211000002320453-121
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGR-RPY  276 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn  276 (466)
                      +    +++     +...-++|.|++|+|. +|+
T Consensus       219 d----it~-----~~L~~~yDAV~la~Ga~~~r  242 (472)
T PRK12810        219 D----ITA-----EQLLAEYDAVFLGGGAYKPR  242 (472)
T ss_pred             C----CCH-----HHHHCCCCEEEEECCCCCCC
T ss_conf             5----769-----99850579899903778785


No 186
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.22  E-value=1.8e-06  Score=65.63  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             3319999898668999999998799399993799
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||||+|||+|.||++||+++++.|.+|+++++.+
T Consensus        33 ~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~   66 (638)
T PRK07573         33 KFDIIVVGTGLAGASAAATLGELGYNVKVFCYQD   66 (638)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             4888999966999999999997499569999228


No 187
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.22  E-value=2e-06  Score=65.23  Aligned_cols=38  Identities=47%  Similarity=0.702  Sum_probs=35.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             19999898668999999998799399993799715025
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      -|||||+|.||++||+++++.|.+|+|+||.+.+||.-
T Consensus       411 rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS  448 (1167)
T PTZ00306        411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf             68998975799999999997799579995789888740


No 188
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.22  E-value=1.9e-06  Score=65.45  Aligned_cols=44  Identities=36%  Similarity=0.561  Sum_probs=40.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
Q ss_conf             33199998986689999999987993999937997150251366
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG   45 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~G   45 (466)
                      +||.+|+|+|.+|...|..|+++|++|.+||+.+.+||.|--.-
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~   44 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA   44 (374)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf             97589987762688999999975987999962566787543434


No 189
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=98.22  E-value=1.5e-06  Score=66.17  Aligned_cols=352  Identities=15%  Similarity=0.236  Sum_probs=163.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .|||||||.|||+||.-|+++|.+|+|+|.....|| |              |..+   .|...-|  +++..       
T Consensus         3 ~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GG-C--------------AgTF---rRr~ftF--DVGAT-------   55 (499)
T TIGR02733         3 SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGG-C--------------AGTF---RRRGFTF--DVGAT-------   55 (499)
T ss_pred             EEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCC-C--------------CCCC---CCCCEEE--ECCCE-------
T ss_conf             069981872678999999853996799974012787-5--------------4434---3687454--04552-------


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC--CEE--ECCCCCCCCCCCCCC------
Q ss_conf             9999999998777778-76400431011001110022210235752112322--100--004676652444576------
Q gi|254781053|r   84 MSYKKSIVESNTQGIN-FLLKKNKIITYHGSARIVSNNKILVKGSSSEETIE--AKN--IVIATGSEASGLPGM------  152 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~-~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~--ad~--iviATGs~p~~iP~~------  152 (466)
                           .+.--...+++ .+++..++++=  .|+++||-.+.. ..++.+-|.  .|.  ---   =|.+.+||-      
T Consensus        56 -----QVAGLEpGGiH~riF~~L~~pLP--~A~~lDPAC~V~-L~dg~~PI~lWhDp~rW~~---ER~~qFPGSe~FW~l  124 (499)
T TIGR02733        56 -----QVAGLEPGGIHARIFRELGLPLP--EAKILDPACAVY-LPDGSEPINLWHDPERWQK---ERERQFPGSERFWSL  124 (499)
T ss_pred             -----EECCCCCCCHHHHHHHHCCCCCC--CCCCCCCCCEEE-CCCCCCCCCCCCCHHHHHH---HHHHCCCCCHHHHHH
T ss_conf             -----21367898579999985488789--884068833677-7879511002358078899---986408885778999


Q ss_pred             -------CCCCC-CEEEEEECCCCCCCCC-----CCCCCCCCCCCCCCCCCHHHHHCC----------------------
Q ss_conf             -------65321-0024530574111111-----333210123445433201322012----------------------
Q gi|254781053|r  153 -------SIDFD-EQVIVSSTGALSFSSV-----PKNLLVIGAGVIGLELGSVWTRLG----------------------  197 (466)
Q Consensus       153 -------~~~~~-~~~~~t~~~~~~l~~~-----P~~ivIIGgG~ig~E~A~~~~~lG----------------------  197 (466)
                             ...+. ...++..+..++|.++     |..++  =+=++.+=+++.|.-.|                      
T Consensus       125 ~~~lf~~nW~F~~RdPvLPprn~WDL~QL~~AlRP~tLl--T~~~~~~Tv~DlL~l~gl~~D~RLr~FLDLQLKLYSQ~~  202 (499)
T TIGR02733       125 CEQLFQSNWRFAQRDPVLPPRNLWDLLQLVSALRPDTLL--TGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQED  202 (499)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             999986053011678635677778999999874630455--687775339999998336888358887555422332220


Q ss_pred             CC-------HHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCEEEEEEE-CCCCCCCE
Q ss_conf             20-------111000011122122-----22112222222222222322002344201468-721699972-13321100
Q gi|254781053|r  198 SC-------VKIIEHSGTILNGMD-----KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKG-KAQVVYRST-DDEPINIE  263 (466)
Q Consensus       198 ~~-------Vtli~~~~~ll~~~d-----~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~v~~~~~-~g~~~~i~  263 (466)
                      ++       -|++..+-.+...++     +-+++.+.+.|++.|.+++++.+|++|+..++ ...+++.+. .++...+.
T Consensus       203 Ad~TAaLYgATvL~~~Q~P~GLwHL~GSMQ~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~~~~v~~~r~~~~~~~~  282 (499)
T TIGR02733       203 ADETAALYGATVLQMAQAPRGLWHLHGSMQVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAGWVVVVDSRKQEDEQVK  282 (499)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHH
T ss_conf             36789999999999843787550013202357899999998679879860023234431684156887416411467744


Q ss_pred             EEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCC----EEECC-C--CEEEC--------CCCCCCCCCCEECCCC
Q ss_conf             00023204531210367840000126764223337763----33026-8--48702--------4333543443000123
Q gi|254781053|r  264 ADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQF----QTSIS-T--IYAIG--------DVVRGPMLAHKAEDEG  328 (466)
Q Consensus       264 ~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~----~Ts~p-~--IyA~G--------Dv~g~~~l~~~A~~~g  328 (466)
                      +|-|+...--    +.| |+-++.+...     ...|-    +...| |  |+--|        ||.+..++.  -.++|
T Consensus       283 A~d~V~~lPp----q~L-L~l~~~~~~~-----~~~Yr~Rl~~LP~pSGA~V~Y~gvk~~alP~~cp~HlQf~--~D~~G  350 (499)
T TIGR02733       283 ADDVVANLPP----QSL-LELLGSELAL-----PPGYRKRLKKLPEPSGAFVLYLGVKRAALPVDCPPHLQFL--SDHQG  350 (499)
T ss_pred             HHCCEEECCH----HHH-HHHCCCCCCC-----CHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCEEE--CCCCC
T ss_conf             2031200774----116-8766876666-----6147999972778897288600013333777787860450--07888


Q ss_pred             CCEEEC-CC-------CCCCCCCCCCCCCCEEEHHHHHHHHHCHHHHHHCCCCEEE-------EEEEECCCCHHHHCC-C
Q ss_conf             201201-11-------2222222333322100014455100147888623466589-------999604470344188-9
Q gi|254781053|r  329 IAVAEI-IS-------GQKGHVNYGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKV-------GKFPFSANGRARSMN-S  392 (466)
Q Consensus       329 ~~aa~~-i~-------~~~~~~~~~~ip~~vft~peia~vGlte~~a~~~~~~~~v-------~~~~~~~~~ra~~~~-~  392 (466)
                      =+.=|| ||       ...++.-..++=+.+|||.. .+.=+.+++-.+.+..|..       -+++.....=-+.+- .
T Consensus       351 P~gENNSLFVSiS~egDGRAP~G~~TlIAS~FTd~~-~W~~l~~~~Y~~~K~~y~~~~~~~L~~~Fdl~~~~~~H~ElAT  429 (499)
T TIGR02733       351 PIGENNSLFVSISQEGDGRAPAGEATLIASSFTDVA-DWSSLDEEDYTAKKKQYTETILERLGEYFDLREENWVHVELAT  429 (499)
T ss_pred             CCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf             820036402786578688877575367874213712-2117726789999999999999984320679733442234167


Q ss_pred             CCEEEEEEEECCCCEEEE
Q ss_conf             833899999789986999
Q gi|254781053|r  393 IDGFVKILANEKSDRVEG  410 (466)
Q Consensus       393 ~~g~~kli~~~~~~~ilG  410 (466)
                      +++|-|. .++.+| |+|
T Consensus       430 PrtF~rw-T~Rp~G-iVG  445 (499)
T TIGR02733       430 PRTFERW-TGRPQG-IVG  445 (499)
T ss_pred             CCCCHHC-CCCCCC-EEC
T ss_conf             8860003-789982-043


No 190
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.20  E-value=6.3e-06  Score=61.63  Aligned_cols=95  Identities=24%  Similarity=0.308  Sum_probs=54.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .|+|||||.-|+.+|..++++|.+|++||..+.+=     ....|.                             ...+.
T Consensus       146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l-----~r~~~~-----------------------------~~~~~  191 (400)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVM-----GRNAPP-----------------------------PVQRY  191 (400)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC-----CCCCCH-----------------------------HHHHH
T ss_conf             39998855899999999997599489995346341-----002698-----------------------------99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--100222102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                    +...++..||+++.+..  .+.+...+.+..+++ +++.+|.+|+|+|.+|+
T Consensus       192 --------------l~~~~~~~GV~~~~~~~v~~~~~g~~~~v~l~~G-~~l~aD~VivaiGv~Pn  242 (400)
T PRK09754        192 --------------LLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSG-ETLQADVVIYGIGISAN  242 (400)
T ss_pred             --------------HHHHHHHCCCEEEECCEEEEEECCCEEEEEECCC-CEEECCEEEECCCCCCC
T ss_conf             --------------9999997898999587589997897799998689-99985899989767537


No 191
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobZ, which is essential for cobalamin biosynthesis  and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=98.20  E-value=2.3e-06  Score=64.81  Aligned_cols=39  Identities=38%  Similarity=0.596  Sum_probs=34.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEE
Q ss_conf             319999898668999999998799399993799--715025
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTC   41 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC   41 (466)
                      -||+|||||.|||-||+.+++.|.+|.|+|..+  ..||+.
T Consensus         2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNa   42 (467)
T TIGR02485         2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNA   42 (467)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
T ss_conf             23788764258899999986379679840247853257865


No 192
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.20  E-value=1.3e-06  Score=66.52  Aligned_cols=260  Identities=15%  Similarity=0.176  Sum_probs=120.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE--CCCCC
Q ss_conf             331999989866899999999879--93999937997150251366737098999999999999866755816--47753
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN--IASCH   77 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~--~~~~~   77 (466)
                      +||||+||||.-|-+.+..++++.  ++++|+||-+..+..+.|-        |+.|...+. .  ..+..+.  -.+..
T Consensus         6 ~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~--------wNNAGTGHa-a--~CElNYTp~~~dg~   74 (497)
T PRK13339          6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNE--------RNNAGTGHA-A--LCELNYTVQQADGS   74 (497)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCC--------CCCCCCCCH-H--HHHHCCCCCCCCCC
T ss_conf             778899895288999999999769987489998147545440788--------665522100-1--02204887656982


Q ss_pred             CCHHHHHHHHHHH--HHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             2899999999999--9987777787640043101100111002--22102357521123221000046766524445766
Q gi|254781053|r   78 LDLKKMMSYKKSI--VESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMS  153 (466)
Q Consensus        78 ~d~~~~~~~~~~~--v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~  153 (466)
                      +|.++.++....+  ..++..   .+.+ .++  +..--.|+.  ||-..|.+++..+.++-++=-+.  ..| .+++++
T Consensus        75 i~i~KA~~IneqFe~S~QfWs---~lv~-~g~--l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~--~~~-lF~~Me  145 (497)
T PRK13339         75 IDIKKAKEINEQFEISKQFWG---HLVK-KGT--IGNPREFINPLPHISFVRGKNNVKFLKKRFEALK--QHP-MFDNIE  145 (497)
T ss_pred             EEHHHHHHHHHHHHHHHHHHH---HHHH-CCC--CCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH--CCC-CCCCCE
T ss_conf             417999999999999999999---9986-578--7985787377982467567588899999999873--487-877768


Q ss_pred             CCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             5321002453057411111-13332101234454332013220122011100001112212222112222222222-222
Q gi|254781053|r  154 IDFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-GMN  231 (466)
Q Consensus       154 ~~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-gV~  231 (466)
                              + ++|.-.+.+ .|  +++=|- .-.=.+|-....-|++|..=            .+.+.+.+.|++. |++
T Consensus       146 --------f-seD~~~i~~w~P--Lvm~gR-~~~e~vAAtr~~~GTDVdFG------------aLTr~l~~~l~~~~~~~  201 (497)
T PRK13339        146 --------Y-TEDIEVMAKWMP--LMMPGR-EADEIMAASKIDEGTDVNFG------------ALTRKMAKSLEAHPNAQ  201 (497)
T ss_pred             --------E-ECCHHHHHHHCC--EEECCC-CCCCCEEEEECCCCEEECHH------------HHHHHHHHHHHHCCCEE
T ss_conf             --------6-059899975377--522698-97885558825785340189------------99999999997489839


Q ss_pred             CCCCHHHHHHHCCC-CCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC--CCCCCCCCCCCCEEECCC
Q ss_conf             32200234420146-8721699972-1332110000023204531210367840000126--764223337763330268
Q gi|254781053|r  232 FQLNSKVSSVKKVK-GKAQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI--DHRGCIEIGGQFQTSIST  307 (466)
Q Consensus       232 i~~~~~v~~i~~~~-~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~--~~~G~I~vd~~~~Ts~p~  307 (466)
                      ++++++|+.+++.. +...+.+++. .++..++.++.|++..|--.- .  -|.+.|+.-  +=.|+++--.+++|.+|.
T Consensus       202 v~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAGG~sL-~--LLQksgi~E~kgyggFPVsG~fl~~~np~  278 (497)
T PRK13339        202 VQYNHEVVDLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAGGGAI-P--LLQKSGIPESKHLGGFPISGQFLRCTNPE  278 (497)
T ss_pred             EEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHH-H--HHHHCCCCCCCCCCCCCCCCEEEECCCHH
T ss_conf             99478863217789998899999657897599993679988873778-9--99984996024657776345689549989


Q ss_pred             C
Q ss_conf             4
Q gi|254781053|r  308 I  308 (466)
Q Consensus       308 I  308 (466)
                      |
T Consensus       279 i  279 (497)
T PRK13339        279 V  279 (497)
T ss_pred             H
T ss_conf             9


No 193
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.20  E-value=2.8e-06  Score=64.21  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             9331999989866899999999879939999379971502
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      .+|||+|||||..|.+.|..|+++|++|+|+|+++.-+||
T Consensus         4 ~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GT   43 (545)
T PRK11101          4 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA   43 (545)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             6176899998689999999998679939999899761620


No 194
>PRK07045 putative monooxygenase; Reviewed
Probab=98.19  E-value=2.6e-06  Score=64.43  Aligned_cols=49  Identities=10%  Similarity=0.272  Sum_probs=38.1

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222232200234420146872169997213321100000232045312103
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+++++++++++.++.++++..+.++..+|+  ++.+|.|+-|-|....+.
T Consensus       120 ~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~--~~~adlvIGADG~~S~vR  168 (388)
T PRK07045        120 PNVRLRFETSIERIERDADGTVTSVTLSDGE--RVAPTVLVGADGARSMIR  168 (388)
T ss_pred             CCEEEEECCEEEEEEECCCCEEEEEEECCCC--EEEEEEEEECCCCCCHHH
T ss_conf             9819997989999998499259999958997--997409999568862788


No 195
>PRK13984 putative oxidoreductase; Provisional
Probab=98.18  E-value=1.1e-07  Score=74.43  Aligned_cols=87  Identities=21%  Similarity=0.349  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             33321012344543320132201220111000011122-------1--22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .|+++|||+|+-|+-.|..|+++|.+||++++.+++..       .  ++.++.+.=.+.|++.||+|++|+.|-+    
T Consensus       283 GKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk----  358 (604)
T PRK13984        283 GKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK----  358 (604)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC----
T ss_conf             9989998986899999999998698689974567789723315872228789999999999972989976857798----


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             68721699972133211000002320453
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +    +++     +...-.+|.|++++|.
T Consensus       359 D----it~-----eeL~~~yDAVfLa~Ga  378 (604)
T PRK13984        359 D----ISL-----EELREKHDAVFVSTGF  378 (604)
T ss_pred             C----CCH-----HHHHHCCCEEEEECCC
T ss_conf             4----789-----9997058999995388


No 196
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.17  E-value=3.2e-06  Score=63.80  Aligned_cols=41  Identities=32%  Similarity=0.378  Sum_probs=37.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||+|||||.-|..+|..|+.+|++|+|||+++.-+||-..
T Consensus         7 ~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsr   47 (503)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSA   47 (503)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf             79899997788999999998679969999368756833477


No 197
>PRK08948 consensus
Probab=98.17  E-value=1.2e-05  Score=59.60  Aligned_cols=54  Identities=13%  Similarity=0.306  Sum_probs=39.5

Q ss_pred             CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222222-222232200234420146872169997213321100000232045312103
Q gi|254781053|r  221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+++ .+|+++.++++++++.+++++.+++.+  +  +++.++.++-|-|....+.
T Consensus       115 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~--g--~~~~a~llVgaDG~~S~vR  169 (392)
T PRK08948        115 LFALLRKAPGVTLHCPARVANVARTQESVTVTLDN--G--ETLQGKLLVAADGSHSALA  169 (392)
T ss_pred             HHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECC--C--CEEEECEEEEECCCCHHHH
T ss_conf             99999758998785587689988558827999789--9--8998378999189973777


No 198
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.15  E-value=3.4e-06  Score=63.58  Aligned_cols=41  Identities=41%  Similarity=0.504  Sum_probs=37.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      |||+|||||.-|..+|+.|+.+|++|+|||+++.-.||--.
T Consensus         7 ~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsr   47 (503)
T PRK13369          7 YDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSR   47 (503)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf             78899996788899999999689949998268755844476


No 199
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.15  E-value=8.9e-06  Score=60.57  Aligned_cols=94  Identities=20%  Similarity=0.300  Sum_probs=58.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||+-|+.+|..++++|.+|++||+.+.+=.                                    ..+| +.+
T Consensus       139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~------------------------------------~~~d-~~~  181 (427)
T TIGR03385       139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILN------------------------------------KLFD-EEM  181 (427)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC------------------------------------CCCC-HHH
T ss_conf             899999639999999999976998999984683365------------------------------------5489-999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--100222102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                 .+.++..+++.||+++.+..  ++.+.+.+.+- +++ +++.+|.+|+|+|-+|+
T Consensus       182 -----------~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~l-~~g-~~i~~D~vi~a~G~~Pn  234 (427)
T TIGR03385       182 -----------NQIVEEELEKHEIELRLNEEVDSIIGEERVGVI-TSG-GVYQADMVILAIGVKPN  234 (427)
T ss_pred             -----------HHHHHHHHHHCCCEEEECCEEEEEECCCCEEEE-ECC-CEEECCEEEECCCCCCC
T ss_conf             -----------999999999759799979889999878878999-469-99972899988774676


No 200
>PRK06847 hypothetical protein; Provisional
Probab=98.15  E-value=2.5e-07  Score=71.88  Aligned_cols=56  Identities=14%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+++.++++++++++++++.+++++.+++.+  |+  ++++|.|+-|-|....+.
T Consensus       111 ~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~d--G~--~~~adllIGADG~~S~vR  166 (375)
T PRK06847        111 RILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTD--GT--TGRYDLVVGADGVYSKVR  166 (375)
T ss_pred             HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECC--CC--EEEEEEEEECCCCCCHHH
T ss_conf             999998984699799665897866649858999858--98--899879998578762788


No 201
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.15  E-value=3.8e-06  Score=63.22  Aligned_cols=54  Identities=11%  Similarity=0.204  Sum_probs=40.0

Q ss_pred             CCCCCCC-CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222222-222232200234420146872169997213321100000232045312103
Q gi|254781053|r  221 CLKIMSK-QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       221 ~~~~l~~-~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+++ .+|+++.+++++.++..++++.+++.  ++  +++.+|.|+-|-|....+.
T Consensus       118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~--~g--~~i~a~lvIgADG~~S~vR  172 (391)
T PRK08020        118 LWQALEAHPNVTLRVPASLIALHRHDDGWELELA--DG--ETIQAKLVIGADGANSQVR  172 (391)
T ss_pred             HHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEC--CC--CEEEECEEEEECCCCCHHH
T ss_conf             9999983899699958802688974986899948--99--9998379999079970544


No 202
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.15  E-value=3.6e-06  Score=63.43  Aligned_cols=39  Identities=44%  Similarity=0.629  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             933199998986689999999987993999937997150
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ++|||||||||.||+.||+.++..|.+|+|+||....+|
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg   43 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG   43 (562)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             116989987848889999999966995799972368898


No 203
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105   Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.14  E-value=2.6e-06  Score=64.47  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=33.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             99998986689999999987993999937997150
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ++|||||.|||++|++|++.|.+|+|+|+.+..||
T Consensus         1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGG   35 (526)
T TIGR02734         1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGG   35 (526)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf             96857776899999999737952899860689875


No 204
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.12  E-value=1.7e-07  Score=72.99  Aligned_cols=87  Identities=33%  Similarity=0.489  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             3332101234454332013220122011100001112-------21--22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .||++|||+|+-|+-.|..|+++|.+||++++.+++.       |.  +++++.+.-.+.|++.||+|++|+.|-+-   
T Consensus       327 GKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGkD---  403 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGKD---  403 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC---
T ss_conf             99899989778999999999976975799525777886675248622277899999999998269889837176876---


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             68721699972133211000002320453
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                           +++     +...-++|.|++++|.
T Consensus       404 -----itl-----~eL~~~yDAVfla~Ga  422 (654)
T PRK12769        404 -----ISL-----ESLLEDYDAVFVGVGT  422 (654)
T ss_pred             -----CCH-----HHHHHCCCEEEEECCC
T ss_conf             -----589-----9997369989995178


No 205
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.12  E-value=5.2e-06  Score=62.28  Aligned_cols=38  Identities=26%  Similarity=0.560  Sum_probs=35.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEE
Q ss_conf             1999989866899999999879--9399993799715025
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGTC   41 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGtC   41 (466)
                      .|+|||||.||++||.+|++.|  .+|+|+|+++.+||-|
T Consensus         2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i   41 (452)
T PRK11883          2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKI   41 (452)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
T ss_conf             5999998789999999999649799789998899881038


No 206
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.12  E-value=4.8e-06  Score=62.52  Aligned_cols=39  Identities=33%  Similarity=0.556  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             933199998986689999999987993999937997150
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      |++||+|||||.+|+++|.+|++.|.+|++||++...+|
T Consensus         3 ~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             764399989869999999999976991999917988767


No 207
>KOG2415 consensus
Probab=98.09  E-value=3.7e-06  Score=63.33  Aligned_cols=45  Identities=42%  Similarity=0.685  Sum_probs=37.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCEEEEEECCC
Q ss_conf             3199998986689999999987------99399993799715025136673
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQL------KNKVAIIEKEKTYGGTCLNIGCI   47 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~------G~~V~lIE~~~~~GGtC~~~GCi   47 (466)
                      |||+|+||||||++||++++++      ..+|+++||...+||.-+--.|+
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavi  127 (621)
T KOG2415          77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVI  127 (621)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEE
T ss_conf             058998888156788888998887607836899996123147713213050


No 208
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.09  E-value=4.2e-06  Score=62.91  Aligned_cols=59  Identities=22%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf             22112222222222222322002344201468721699972133211000002320453121
Q gi|254781053|r  215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY  276 (466)
Q Consensus       215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn  276 (466)
                      +.+.+.+.+.|++.|++++++++|..++..++....+. ..+|  .++++|.|++|+||...
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~-~~~g--~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVK-LTKG--EEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEE-CCCC--CEEECCEEEECCCCCHH
T ss_conf             99999999999855828995207889981587079999-2578--48732779990476467


No 209
>PRK04965 nitric oxide reductase; Provisional
Probab=98.09  E-value=1.2e-05  Score=59.53  Aligned_cols=31  Identities=29%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ++|||||.-|+.+|..+++.|++|++||+.+
T Consensus       144 vvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~  174 (378)
T PRK04965        144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAA  174 (378)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9998983889999999996798899976667


No 210
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.09  E-value=4.2e-07  Score=70.21  Aligned_cols=90  Identities=27%  Similarity=0.432  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             113332101234454332013220122011100001112-------212--22211222222222222232200234420
Q gi|254781053|r  172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NGM--DKEIAAHCLKIMSKQGMNFQLNSKVSSVK  242 (466)
Q Consensus       172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~i~  242 (466)
                      +..|||+|||+|+-||=+|.+|+|-|++|++++|-|.+-       |.|  |+.+-..=.+.|+.-||+|++|++|=+  
T Consensus       141 ~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvGr--  218 (480)
T TIGR01318       141 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVGR--  218 (480)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEC--
T ss_conf             078278997788602579998751785599974770307601368885110278999999999758927865816503--


Q ss_pred             CCCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             14687216999721332110000023204531
Q gi|254781053|r  243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       243 ~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                        |    +.+.     ...-++|.|++.+|.-
T Consensus       219 --D----~~l~-----~LLe~YDAVFlGvGTY  239 (480)
T TIGR01318       219 --D----ISLD-----DLLEDYDAVFLGVGTY  239 (480)
T ss_pred             --C----CCHH-----HHHHHCCEEEEECCCC
T ss_conf             --2----5554-----4431148489611433


No 211
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.08  E-value=2.2e-07  Score=72.30  Aligned_cols=86  Identities=27%  Similarity=0.497  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             332101234454332013220122011100001112-------21--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ||++|||+|+-|+-.|..|+++|.+||++++.+++.       |.  +++++.+.-.+.|++.||+|++|+.|-+-    
T Consensus       311 kKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkD----  386 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD----  386 (639)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC----
T ss_conf             9899989758999999999975990699936888898685358745277789999999998649889919677986----


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             8721699972133211000002320453
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                          +++     +...-++|.|++++|.
T Consensus       387 ----it~-----~eL~~~yDAVflg~Ga  405 (639)
T PRK12809        387 ----ITF-----SDLTSEYDAVFIGVGT  405 (639)
T ss_pred             ----CCH-----HHHHHHCCEEEEEECC
T ss_conf             ----889-----9997317989997367


No 212
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.07  E-value=5.6e-06  Score=62.00  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=31.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf             3319999898668999999998-799399993799
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEK   35 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~   35 (466)
                      ++||+||||||+||.+|+.|++ .|.++.|||+.+
T Consensus        32 ~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~   66 (634)
T PRK08294         32 EVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKP   66 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             58889999658999999998713799889992799


No 213
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.06  E-value=7.4e-06  Score=61.14  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+-||+||||||+|+.+|..|+++|.+++|+|+.+
T Consensus         1 mrt~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~   35 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             99889999977999999999997799889997689


No 214
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.05  E-value=7.4e-06  Score=61.15  Aligned_cols=42  Identities=33%  Similarity=0.458  Sum_probs=38.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE
Q ss_conf             93319999898668999999998799399993799715025136
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI   44 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~   44 (466)
                      |+  |+|.|||.||++||.+|+++|.+|+|.|..+.+||-|--+
T Consensus         1 ~r--Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~   42 (485)
T COG3349           1 MR--VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW   42 (485)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
T ss_conf             92--8997462788899999986898539984267668613111


No 215
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.05  E-value=7e-06  Score=61.31  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             31999989866899999999879939999379971
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      =||+||||||||+++|+.|++.|.+|+|+|+.+.+
T Consensus         3 ~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~   37 (400)
T PRK06475          3 GSILIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             97999895889999999999789999999179988


No 216
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.03  E-value=7.6e-06  Score=61.06  Aligned_cols=33  Identities=33%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             933199998986689999999987993999937
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK   33 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~   33 (466)
                      |+|+|+|||||.||..||+.++++|.+|+|+|-
T Consensus         2 m~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~em   34 (434)
T PRK05335          2 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEM   34 (434)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             988569989868999999999968996799993


No 217
>PRK11749 putative oxidoreductase; Provisional
Probab=98.02  E-value=4.1e-07  Score=70.30  Aligned_cols=90  Identities=28%  Similarity=0.368  Sum_probs=65.1

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             333210123445433201322012201110000111221---------22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .||++|||+|+-|+-.|..|+++|.+||++|+.+++...         +.+++.+...+.+++.||+|++|+.+.+-   
T Consensus       140 gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~d---  216 (460)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGRD---  216 (460)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECCC---
T ss_conf             99899989678999999999976984799704787875575458997554479999999998539789855585664---


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCC-EEE
Q ss_conf             68721699972133211000002320453-121
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGR-RPY  276 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn  276 (466)
                           +++     +...-++|.|++|+|- +|+
T Consensus       217 -----itl-----~~L~~~ydAV~lAtGa~~~r  239 (460)
T PRK11749        217 -----ITL-----DELRAEYDAVFIGTGLGLPR  239 (460)
T ss_pred             -----CCH-----HHHHHCCCEEEEECCCCCCC
T ss_conf             -----328-----87741148899944789886


No 218
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02  E-value=2.7e-05  Score=57.01  Aligned_cols=26  Identities=23%  Similarity=0.169  Sum_probs=22.7

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             99999999879939999379971502
Q gi|254781053|r   15 YACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus        15 ~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |+||++|++.|++|+||+|.+..++.
T Consensus         1 L~AAl~~~~~G~~V~vv~K~~~~~sn   26 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSH   26 (570)
T ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             95789999769918999789999878


No 219
>PRK06370 mercuric reductase; Validated
Probab=98.01  E-value=2.9e-05  Score=56.80  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||..|+..|..++++|.+|+|||+.+.
T Consensus       172 ~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~  204 (459)
T PRK06370        172 HLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPR  204 (459)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             499989847799999999963988999996573


No 220
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.01  E-value=9.9e-06  Score=60.23  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             319999898668999999998799399993799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -||+||||||+|+.+|+.|++.|.+|+|||+.+
T Consensus         2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             629999966999999999985799699997899


No 221
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.00  E-value=3.3e-05  Score=56.38  Aligned_cols=95  Identities=20%  Similarity=0.323  Sum_probs=60.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.+-         |.     .                   +  -+..+ 
T Consensus       172 ~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il---------~~-----~-------------------d--~~~~~-  215 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------PG-----E-------------------D--EDIAH-  215 (458)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC---------CH-----H-------------------H--HHHHH-
T ss_conf             59998997479999999996598799998446678---------30-----5-------------------6--78999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECC-CCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--1002-22102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVS-NNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~-~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                   .+...+++.||+++.+..  ++.. ...+.+...++.+++++|.+++|+|-+|+
T Consensus       216 -------------~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vl~a~Gr~Pn  269 (458)
T PRK06912        216 -------------ILREKLEEDGVEIFTGAALKGLNNYKKQASFEYEGSIQEVNPDFVLVAVGRKPR  269 (458)
T ss_pred             -------------HHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCEEEEECCEEEEECCCCCC
T ss_conf             -------------999999866959982887999986698799995896389964799990487664


No 222
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.00  E-value=7.7e-06  Score=60.99  Aligned_cols=218  Identities=15%  Similarity=0.204  Sum_probs=103.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEEECCCCHHHHHHHHHHHHHH-HHHHHHC-CEECCCCCC
Q ss_conf             319999898668999999998799399993799--715025136673709899999999999-9866755-816477532
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLNIGCIPSKALLHASEMYSHI-AKEAGDL-GINIASCHL   78 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~~-g~~~~~~~~   78 (466)
                      |-|+|+|-||||++.|.+|-..|+.|+-||.-+  ++-=. +   --|-|   ...+++..+ .|....| |+.-....+
T Consensus       402 ~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDGLKIepLp~~-~---~~pir---~~~~l~~~L~eR~~~GFGGVaEygit~  474 (1048)
T PRK06567        402 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITPLPFD-V---HKPIK---FWHEYKNLLSERMPRGFGGVAEYGITV  474 (1048)
T ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCEEEECCEEECCCCHH-H---CCCCH---HHHHHHHHHHHHHHCCCCCEEECCEEE
T ss_conf             6489992486520188998747872898654452028746-5---26412---389987656665303656402023567


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             89999999999999877777876400431011001110022210235752112322100004676652444576653210
Q gi|254781053|r   79 DLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDE  158 (466)
Q Consensus        79 d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~~~~~  158 (466)
                      .|.+-      +.+-    +.-.+++..---++|--||-+.  ++++.   .-.+-+|++-+|||+--+.++.++.... 
T Consensus       475 rwdkn------~l~~----i~l~l~rr~~f~~~ggvr~ggt--lt~~~---a~~lgfdhia~a~gag~p~~~~~~n~la-  538 (1048)
T PRK06567        475 RWDKN------NLDI----LRLILERNNNFKYYDGVALDFN--ITKEQ---AFDLGFDHIAFCIGAGQPKVLDIENFEA-  538 (1048)
T ss_pred             EECCC------HHHH----HHHHHHHHHCCEEECCEEECCE--EEHHH---HHHCCCCEEEEECCCCCCCCCCCCCCHH-
T ss_conf             74420------8999----9999977525646354554562--02989---9874877067431589985026665146-


Q ss_pred             EEEEEECCCC-CC--------CCCC-----CCCCCCCCCCCCCCCCHHHH--------HCC-------------------
Q ss_conf             0245305741-11--------1113-----33210123445433201322--------012-------------------
Q gi|254781053|r  159 QVIVSSTGAL-SF--------SSVP-----KNLLVIGAGVIGLELGSVWT--------RLG-------------------  197 (466)
Q Consensus       159 ~~~~t~~~~~-~l--------~~~P-----~~ivIIGgG~ig~E~A~~~~--------~lG-------------------  197 (466)
                      ..+....|++ .|        ..+.     =-++|||||.+|+..|+-.-        +|+                   
T Consensus       539 rGvr~asdflM~Lqltga~~~~s~anlqvrlP~vVIGgGLTaiD~aTE~~ayY~~qVekf~~~yv~~~~~eEe~~Ia~EF  618 (1048)
T PRK06567        539 KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEF  618 (1048)
T ss_pred             HHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             67778999999987343011055324055235699858740243667888888999999999999823787889999999


Q ss_pred             -----------------------CCHHHHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf             -----------------------2011100001112212222---1122222222222223220023442014687
Q gi|254781053|r  198 -----------------------SCVKIIEHSGTILNGMDKE---IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGK  247 (466)
Q Consensus       198 -----------------------~~Vtli~~~~~ll~~~d~~---~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~  247 (466)
                                             --||+++|.. +-.  .|.   -.+++.+.|+ +||.+..+.++.++..++-+
T Consensus       619 L~Har~~r~~~~~~e~~~Ll~~WGGVTI~YRk~-L~d--SPAYrlNhEEl~kALe-EGI~f~E~l~P~~i~~D~~g  690 (1048)
T PRK06567        619 IAHAKLFKEAKNNEELRKVFNKLGGATVYYRGR-LQD--SPAYKLNHEELIYALA-LGVDFKENMQPLRINVDKYG  690 (1048)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCC-CCC--CCCHHHCHHHHHHHHH-HHHHHHHCCCCEEEECCCCC
T ss_conf             999999997440668999999838869998267-666--9521206899999997-21456624885188515667


No 223
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.99  E-value=3.5e-07  Score=70.80  Aligned_cols=88  Identities=25%  Similarity=0.349  Sum_probs=63.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             333210123445433201322012201110000111221---------22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .||++|||+|+-|+-.|.+|+++|.+||++++.+.+...         +++++.+.=.+.+++.||+|++|+.+-+-   
T Consensus       193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~d---  269 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD---  269 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC---
T ss_conf             99799968378999999999977990699815888898676448633389999999999999719858866794774---


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             687216999721332110000023204531
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                           +++     +...-++|.|++++|-.
T Consensus       270 -----itl-----~~L~~~yDAVflaiGa~  289 (652)
T PRK12814        270 -----ITL-----EELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             -----CCH-----HHHHHHCCEEEEEECCC
T ss_conf             -----779-----99986589999975578


No 224
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.98  E-value=1.3e-05  Score=59.35  Aligned_cols=38  Identities=34%  Similarity=0.599  Sum_probs=34.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCCCCCE
Q ss_conf             933199998986689999999987------993999937997150
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL------KNKVAIIEKEKTYGG   39 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~------G~~V~lIE~~~~~GG   39 (466)
                      || .|+|||||.+|++||.+|.++      +.+|+|+|+.+.+||
T Consensus         1 Mk-~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG   44 (466)
T PRK12416          1 MK-TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (466)
T ss_pred             CC-EEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf             97-599989978999999999872555589986799977998867


No 225
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=97.98  E-value=9.7e-07  Score=67.56  Aligned_cols=97  Identities=26%  Similarity=0.433  Sum_probs=67.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC------CCCC-------CCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             3210123445433201322012201110000111------2212-------22211222222222222232200234420
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI------LNGM-------DKEIAAHCLKIMSKQGMNFQLNSKVSSVK  242 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l------l~~~-------d~~~~~~~~~~l~~~gV~i~~~~~v~~i~  242 (466)
                      .++|||||+-|+..|..++++|.+|+|+++.+..      ++.+       ..++.....+.+.+.+++++.++.|++++
T Consensus         1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~   80 (277)
T pfam07992         1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAID   80 (277)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf             99999976999999999984999799993799935755774771164543314561899999987597999687799997


Q ss_pred             CCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             146872169997213321100000232045312103
Q gi|254781053|r  243 KVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       243 ~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..+..  ++.  .++  .++++|.+++|+|.+|+..
T Consensus        81 ~~~~~--v~~--~~g--~~~~~d~lviAtG~~~~~~  110 (277)
T pfam07992        81 KAGKK--VTL--DDG--KELTYDKLVIATGARPRRP  110 (277)
T ss_pred             CCCCE--EEE--CCC--CEEECCEEEECCCCCCCCC
T ss_conf             89998--998--789--3998599999879986225


No 226
>pfam03486 HI0933_like HI0933-like protein.
Probab=97.98  E-value=8.7e-07  Score=67.90  Aligned_cols=82  Identities=24%  Similarity=0.314  Sum_probs=57.3

Q ss_pred             HHHHHCCCCHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf             132201220111000011122122--221122222222222223220023442014687216999721332110000023
Q gi|254781053|r  191 SVWTRLGSCVKIIEHSGTILNGMD--KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVL  268 (466)
Q Consensus       191 ~~~~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl  268 (466)
                      .+|.++|... -.+...|+.|.-+  .++.+.+.+.+++.||+++++++|++|+..+++......    +..++.+|.|+
T Consensus        83 ~ff~~~Gl~~-~~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~----~~~~~~a~~vI  157 (405)
T pfam03486        83 AWFEELGVPL-KEEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDT----GGEELEADSLV  157 (405)
T ss_pred             HHHHHCCCEE-EECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEE----CCCEEEECEEE
T ss_conf             9999779905-977899797898986999999999999779789958887899975994599994----89589727899


Q ss_pred             ECCCCE--EEE
Q ss_conf             204531--210
Q gi|254781053|r  269 VAAGRR--PYT  277 (466)
Q Consensus       269 ~a~G~~--Pn~  277 (466)
                      +|+|=.  |.+
T Consensus       158 lAtGG~s~p~~  168 (405)
T pfam03486       158 LATGGLSWPKT  168 (405)
T ss_pred             EECCCCCCCCC
T ss_conf             90488665655


No 227
>PRK06847 hypothetical protein; Provisional
Probab=97.97  E-value=1.3e-05  Score=59.25  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=32.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9331999989866899999999879939999379971
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      || .|+||||||+|+++|+.|++.|.+|+|+|+.+.+
T Consensus         4 ~k-kV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~   39 (375)
T PRK06847          4 VK-KVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEW   39 (375)
T ss_pred             CC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             98-7999996689999999999679999999089998


No 228
>PRK06753 hypothetical protein; Provisional
Probab=97.97  E-value=1.2e-05  Score=59.58  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9331999989866899999999879939999379971
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      ||  |+|||||++|+++|+.|++.|.+|+|+|+.+.+
T Consensus         1 mk--V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~   35 (373)
T PRK06753          1 MK--IAIIGAGIGGLTAAALLQEQGHTVKVFEKNESV   35 (373)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             98--999994589999999999779999998889998


No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.97  E-value=1.2e-06  Score=66.91  Aligned_cols=94  Identities=20%  Similarity=0.332  Sum_probs=57.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||+-|+.+|..++++|.+|++||+.+.+=         |               +          ...-++.+.
T Consensus       151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l---------~---------------~----------~~d~~~~~~  196 (443)
T PRK09564        151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRIL---------P---------------D----------SFDKEITDV  196 (443)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCC---------C---------------C----------CCCHHHHHH
T ss_conf             59999970999999999986698899999578345---------5---------------6----------678999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EECCCCCCC-CCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--100222102-357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIVSNNKIL-VKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~~~~~v~-V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                    ++..+++.||++..+..  .+.+.+.+. +..++  .++++|.+++|+|.+|+
T Consensus       197 --------------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--~~i~~D~vi~a~G~~Pn  247 (443)
T PRK09564        197 --------------MEEELREKGVELHTSEFVKSLIGEDKVEGVVTNK--GEYEADVVILSTGIKPN  247 (443)
T ss_pred             --------------HHHHHHHCCCEEEECCEEEEEEECCCEEEEEECC--CEEEEEEEEECCCCCCC
T ss_conf             --------------9999997797999899899999269899999779--88972389995588535


No 230
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.95  E-value=1.8e-06  Score=65.59  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.
T Consensus       150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~  182 (438)
T PRK13512        150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             799989558999999999972990899993573


No 231
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.95  E-value=5.1e-05  Score=55.02  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=30.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             999989866899999999879939999379971
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      ++|||||+-|+..|.-.+++|.+|+|||+.+.+
T Consensus       176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~i  208 (454)
T COG1249         176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             999898889999999999869978999468877


No 232
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.95  E-value=6.3e-07  Score=68.92  Aligned_cols=88  Identities=25%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             333210123445433201322012201110000111221---------22221122222222222223220023442014
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNG---------MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      .||++|||||+-|+-.|..|+++|.+||++++.+++...         +.+++.+.-.+.+++.||++++|+++.+=   
T Consensus       137 gkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~d---  213 (560)
T PRK12771        137 GKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGED---  213 (560)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC---
T ss_conf             99899989778999999999976985899676788898883568754475899999999999649679838784465---


Q ss_pred             CCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             687216999721332110000023204531
Q gi|254781053|r  245 KGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       245 ~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                           +++.     ...-.+|.|++|+|-.
T Consensus       214 -----it~~-----~L~~~yDAV~la~Ga~  233 (560)
T PRK12771        214 -----ITLE-----QLEGDYDAVFVAIGAQ  233 (560)
T ss_pred             -----CCHH-----HHHCCCCEEEECCCCC
T ss_conf             -----6799-----9717788899916878


No 233
>KOG2311 consensus
Probab=97.95  E-value=1.6e-05  Score=58.62  Aligned_cols=33  Identities=39%  Similarity=0.695  Sum_probs=30.4

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             331999989866899999999879939999379
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      +|||||||||.||..||..+++.|.+++|+-.+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311          28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf             555799878752048889887418734786325


No 234
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=97.94  E-value=1.7e-06  Score=65.76  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=13.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             99998986689999999987993999937
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEK   33 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~   33 (466)
                      |+|||+|..|.-.|.++++...+|.+.-+
T Consensus       186 VlVVG~GnSg~DIA~els~~a~~V~ls~R  214 (532)
T pfam00743       186 VLVIGLGNSGGDIAVELSRTAAQVFLSTR  214 (532)
T ss_pred             EEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf             99978889841059999852786899970


No 235
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.93  E-value=4e-05  Score=55.82  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+.|+..|..++++|.+|+|||+.+.
T Consensus       177 ~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~  209 (464)
T PRK05976        177 SLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADR  209 (464)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             599989968999999999953986999985365


No 236
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93  E-value=9.7e-05  Score=53.01  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+.|+..|..++++|.+|+|||+.+.
T Consensus       174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~  206 (467)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (467)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             699999879999999999832987777621131


No 237
>PRK02106 choline dehydrogenase; Validated
Probab=97.93  E-value=1.5e-05  Score=58.90  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf             3319999898668999999998-799399993799
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQ-LKNKVAIIEKEK   35 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~-~G~~V~lIE~~~   35 (466)
                      .||+||||||+||...|.+|++ .+++|+|||+++
T Consensus         5 eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG~   39 (555)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (555)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             12889989668999999998349898599986899


No 238
>PRK07190 hypothetical protein; Provisional
Probab=97.91  E-value=1.8e-05  Score=58.33  Aligned_cols=34  Identities=32%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      -||+|||+||.|+++|..|+++|.+|++||+.+.
T Consensus         6 tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~   39 (480)
T PRK07190          6 ADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDG   39 (480)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             4489999388999999999887999999969999


No 239
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281   Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.91  E-value=1.2e-05  Score=59.54  Aligned_cols=32  Identities=34%  Similarity=0.548  Sum_probs=30.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             33199998986689999999987993999937
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEK   33 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~   33 (466)
                      +||+||||||-|||-||++|++.|+++++|-|
T Consensus         2 ~fDvviVGaGGAGlRaAl~la~~G~~tAv~tK   33 (615)
T TIGR01816         2 KFDVVIVGAGGAGLRAALQLAKGGLNTAVVTK   33 (615)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf             42279886875689999986327923889831


No 240
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90  E-value=6.1e-05  Score=54.48  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      -++|||||+.|+..|..++++|.+|+|||+.+.
T Consensus       159 ~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~  191 (438)
T PRK07251        159 RLGILGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             699988864588999999834876899984610


No 241
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.90  E-value=8.4e-05  Score=53.46  Aligned_cols=94  Identities=18%  Similarity=0.357  Sum_probs=56.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.+         +|                            .+|- + 
T Consensus       178 ~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~l---------l~----------------------------~~d~-~-  218 (465)
T PRK05249        178 SLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRL---------LS----------------------------FLDD-E-  218 (465)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCC---------HH----------------------------HCCH-H-
T ss_conf             5999999821799999999609877897216600---------02----------------------------2189-9-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-E-EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             999999999877777876400431011001-1-100-222102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGS-A-RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~-a-~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                            +.    +.+...+++.||+++.+. . ++. +++.+.+...++ +++++|.+++|+|-+|+
T Consensus       219 ------~~----~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~g-~~i~~D~Vl~a~Gr~pn  274 (465)
T PRK05249        219 ------IS----DALSYHFRNSGVVIRHNEEYEKVEGGDDGVILHLKSG-KKIKADCLLYANGRTGN  274 (465)
T ss_pred             ------HH----HHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCC-CEEEEEEEEECCCCCCC
T ss_conf             ------99----9999999987929997988999996087679994799-59987089988766667


No 242
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.90  E-value=6.9e-05  Score=54.10  Aligned_cols=36  Identities=47%  Similarity=0.708  Sum_probs=34.0

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             199998986689999999987993999937997150
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      +++|||+|+.|+.+|..++++|++|+++|..+.+|+
T Consensus       138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~  173 (415)
T COG0446         138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG  173 (415)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             399989349999999999877993899975664233


No 243
>PRK12831 putative oxidoreductase; Provisional
Probab=97.90  E-value=9.3e-07  Score=67.71  Aligned_cols=90  Identities=23%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------CC--CC-CCCCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf             33321012344543320132201220111000011122-------12--22-2112222222222222322002344201
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------GM--DK-EIAAHCLKIMSKQGMNFQLNSKVSSVKK  243 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~~--d~-~~~~~~~~~l~~~gV~i~~~~~v~~i~~  243 (466)
                      .||++|||+|+-|+-.|..|+++|.+||++++.+++..       .|  +. ++.+.-.+.+++.||++++|+.+-+-  
T Consensus       140 gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~~~GV~~~~n~~vG~d--  217 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVIVGRT--  217 (464)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC--
T ss_conf             998999897689999999999769917998278888980445168887667899999999998529389915742787--


Q ss_pred             CCCCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             4687216999721332110000023204531
Q gi|254781053|r  244 VKGKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       244 ~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                            +++.+-   ...-.+|.|++|+|..
T Consensus       218 ------is~~~L---~~~~~yDAV~la~Ga~  239 (464)
T PRK12831        218 ------VTIDEL---LEEEGFDAVFIGSGAG  239 (464)
T ss_pred             ------CCHHHH---HHCCCCCEEEEECCCC
T ss_conf             ------679999---6356998899944888


No 244
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.90  E-value=6.1e-05  Score=54.45  Aligned_cols=136  Identities=24%  Similarity=0.385  Sum_probs=76.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHH
Q ss_conf             99998986689999999987993999937997150251366737098999999999999866755816477532899999
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMM   84 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~   84 (466)
                      ++|||||-=|+..|.-.+++|.+|++||-.+.+         +|                          ...-|.++.+
T Consensus       181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------Lp--------------------------~~D~evSk~~  225 (481)
T TIGR01350       181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------LP--------------------------GEDAEVSKVV  225 (481)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CC--------------------------CCCHHHHHHH
T ss_conf             699878667788999998539808999457500---------35--------------------------4316899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-EEEEEEEE-E----ECCCCCCC--CCCCCC--CCCCCCEEECCCCCCCCCCCCCCC-
Q ss_conf             9999999987777787640043-10110011-1----00222102--357521--123221000046766524445766-
Q gi|254781053|r   85 SYKKSIVESNTQGINFLLKKNK-IITYHGSA-R----IVSNNKIL--VKGSSS--EETIEAKNIVIATGSEASGLPGMS-  153 (466)
Q Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~-V~~~~g~a-~----~~~~~~v~--V~~~~~--~~~i~ad~iviATGs~p~~iP~~~-  153 (466)
                                    ...|++.| |+++.++- .    --+++.|.  +...++  .+++++|++++|.|=+|+ +.++. 
T Consensus       226 --------------~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn-~~~~GL  290 (481)
T TIGR01350       226 --------------KKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPN-TEGLGL  290 (481)
T ss_pred             --------------HHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCC-CCCCCE
T ss_conf             --------------99997449849854854423357752878999999879980588987399998424347-676460


Q ss_pred             ----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             ----532100245305741111113332101234454332013
Q gi|254781053|r  154 ----IDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSV  192 (466)
Q Consensus       154 ----~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~  192 (466)
                          ...+.+..+.-|+-++ ...| ++--||-=.-+.-||+.
T Consensus       291 e~~Gv~~~~rG~i~vd~~~~-Tnv~-~IYAIGDv~gg~mLAH~  331 (481)
T TIGR01350       291 EKLGVKLDERGRIVVDEYMR-TNVP-GIYAIGDVIGGPMLAHV  331 (481)
T ss_pred             EEEEEEECCCCEEEECCEEE-ECCC-CEEEEEECCCCCHHHHH
T ss_conf             21211887898188798325-1689-66688734787026899


No 245
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.88  E-value=2.2e-05  Score=57.72  Aligned_cols=100  Identities=22%  Similarity=0.383  Sum_probs=66.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      -++|||||+-|+..|=-.+|+|.+|+|+++.+.+               +                  ...++.  .   
T Consensus       183 sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~l---------------l------------------~~~epe--i---  224 (494)
T TIGR02053       183 SLVVIGGGAIGVELAQAFARLGSEVTILQRSERL---------------L------------------PREEPE--I---  224 (494)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH---------------C------------------CCCCHH--H---
T ss_conf             6888865289999999998577614036799864---------------4------------------646888--9---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCEEEEEEE--EEECCC-----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             999999999877777876400-431011001--110022-----2102357521123221000046766524445766
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKK-NKIITYHGS--ARIVSN-----NKILVKGSSSEETIEAKNIVIATGSEASGLPGMS  153 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~-~~V~~~~g~--a~~~~~-----~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~  153 (466)
                                 ...++..|.. .||+++...  .+-++.     ..+.++..++.+.+++|+|++|||=+|+ +.+++
T Consensus       225 -----------s~~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN-~~gL~  290 (494)
T TIGR02053       225 -----------SAAVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPN-TDGLN  290 (494)
T ss_pred             -----------HHHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCC-CCCCC
T ss_conf             -----------9999998414787799804403554445279818999855898745743112555278756-66677


No 246
>PRK13748 putative mercuric reductase; Provisional
Probab=97.87  E-value=8.1e-05  Score=53.58  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=29.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC
Q ss_conf             11333210123445433201322012201110000
Q gi|254781053|r  172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS  206 (466)
Q Consensus       172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~  206 (466)
                      +-|=.++|||+|+-|...|-..+++|.+|+|||+.
T Consensus        96 ~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~  130 (561)
T PRK13748         96 EGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99876899895889999999999789979999479


No 247
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.86  E-value=1e-06  Score=67.36  Aligned_cols=87  Identities=23%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122-------1--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-|+-.|..|+++|.+||++|+.+++-.       .  +++++.+.=.+.|++.||+|++|+.+-+-...+
T Consensus       440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkdit~~  519 (760)
T PRK12778        440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKTISVE  519 (760)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCCHH
T ss_conf             98999897789999999999779906998058888975765486110878999999999986497998995778868999


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             8721699972133211000002320453
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                                  +-..-.+|.|++++|.
T Consensus       520 ------------eL~~egyDAVfla~Ga  535 (760)
T PRK12778        520 ------------ELEEEGFKGIFVASGA  535 (760)
T ss_pred             ------------HHHHCCCCEEEEECCC
T ss_conf             ------------9975889999994067


No 248
>KOG2820 consensus
Probab=97.86  E-value=0.00014  Score=51.74  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             933199998986689999999987993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |-.|++|||+|-=|+++|.+|+++|.++.|+|+.+.
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~   41 (399)
T KOG2820           6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPL   41 (399)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCC
T ss_conf             651699986640000889999865770798733677


No 249
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.86  E-value=2.5e-05  Score=57.26  Aligned_cols=38  Identities=32%  Similarity=0.598  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEE
Q ss_conf             9331999989866899999999879--939999379971502
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTYGGT   40 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~GGt   40 (466)
                      |+  ++|||||.+||+||.+|++++  .+++|+|+++.+||.
T Consensus         1 ~~--i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~   40 (444)
T COG1232           1 MK--IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL   40 (444)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCE
T ss_conf             93--99987828889999999985899867998348877865


No 250
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85  E-value=4.8e-05  Score=55.22  Aligned_cols=33  Identities=36%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.
T Consensus       174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~  206 (462)
T PRK06416        174 SLVVIGGGYIGIEFASAYASLGAEVTIIEALPR  206 (462)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCEEEEEECCCC
T ss_conf             699988978788999999973976899740543


No 251
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.85  E-value=0.00011  Score=52.58  Aligned_cols=93  Identities=23%  Similarity=0.432  Sum_probs=57.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.+         +|.                        .++  +..+ 
T Consensus       160 ~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~i---------l~~------------------------~D~--~~~~-  203 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF---------LPR------------------------EDR--DIAD-  203 (441)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CCC------------------------CHH--HHHH-
T ss_conf             7999898589999999999759878897046732---------663------------------------114--6899-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--100-222102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                   .+...+++.||+++.+.-  ++. +...+.+...+  ..+.+|.+++|+|-+|+
T Consensus       204 -------------~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~vlva~Gr~Pn  255 (441)
T PRK08010        204 -------------NIATILRDQGVDIILNAHVERISHHENQVQVHSEH--AQLAVDALLIASGRQPA  255 (441)
T ss_pred             -------------HHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECC--CEEEEEEEEEECCCCCC
T ss_conf             -------------99999987885997386799999539989999768--67866489994476655


No 252
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.85  E-value=2.1e-06  Score=65.15  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122-------1--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-|+-.|..|++.|.+||++++.+++.+       .  ++.++.+.=.+.+++.||+|++|...      +
T Consensus       538 kKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f~tnvg~------d  611 (1012)
T TIGR03315       538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------D  611 (1012)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC------C
T ss_conf             8899989778999999999977995699815897885478558877789999999999999689699979988------8


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             87216999721332110000023204531
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                          +++.    +-..-.+|.|++++|-.
T Consensus       612 ----itle----eL~~egYDAVfLa~GA~  632 (1012)
T TIGR03315       612 ----LTVA----ELKNQGYKYVILAIGAW  632 (1012)
T ss_pred             ----CCHH----HHHHCCCCEEEEECCCC
T ss_conf             ----8899----99658999999956899


No 253
>PRK05868 hypothetical protein; Validated
Probab=97.83  E-value=2.3e-06  Score=64.80  Aligned_cols=49  Identities=14%  Similarity=0.283  Sum_probs=39.5

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             22222322002344201468721699972133211000002320453121036
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      +.+++++++.+++.++++++++.|++.++  .  +.++|.|+-|-|....+..
T Consensus       116 ~~~v~~~~g~~v~~i~~~~~~V~V~f~dg--~--~~~~DlVIGADGi~S~VR~  164 (372)
T PRK05868        116 QPTVEYLFDDSISTLQDDGAAVRVTFERA--A--AREFDLVIGADGLHSNVRR  164 (372)
T ss_pred             CCCEEEEECCEEEEEEECCCEEEEEEECC--C--EEEEEEEEECCCCCHHHHH
T ss_conf             58809995788899996499799999079--8--5786589974787417788


No 254
>PRK07538 hypothetical protein; Provisional
Probab=97.83  E-value=2.8e-05  Score=56.91  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      ||+||||||+|+++|+.|++.|.+|+++|+.+.+
T Consensus         2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPEL   35 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             8999990589999999999789998999369988


No 255
>PRK06116 glutathione reductase; Validated
Probab=97.82  E-value=0.00012  Score=52.41  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+-|+..|..++++|.+|++|++.+.
T Consensus       169 ~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~  201 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDA  201 (450)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             799999966699999999960984899994484


No 256
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.82  E-value=2.5e-06  Score=64.61  Aligned_cols=85  Identities=25%  Similarity=0.403  Sum_probs=59.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122-------1--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      |+++|||+|+-|+-.|..|++.|.+||++++.+++.+       .  ++.++.+.=.+.+++.||+|++|..     . +
T Consensus       551 KKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnvg-----~-d  624 (1032)
T PRK09853        551 HPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGCS-----P-D  624 (1032)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCC-----C-C
T ss_conf             979998968899999999997799369981589788426735887678999999999999977969996999-----9-8


Q ss_pred             CCCEEEEEEECCCCCCCE-EEEEEECCCCE
Q ss_conf             872169997213321100-00023204531
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIE-ADAVLVAAGRR  274 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~-~D~vl~a~G~~  274 (466)
                          +++     +...-+ +|.|++|+|-.
T Consensus       625 ----itl-----e~L~~eGyDAVfLa~GA~  645 (1032)
T PRK09853        625 ----LTV-----EQLKNQGYHYVLLAIGAD  645 (1032)
T ss_pred             ----CCH-----HHHHHCCCCEEEEECCCC
T ss_conf             ----889-----999657999999945889


No 257
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.81  E-value=1.8e-05  Score=58.33  Aligned_cols=89  Identities=31%  Similarity=0.500  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122-------1--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-|+-.|..|++.|..||++++.+++..       .  .+.++.+...+.|++.|++|++++.+-.    +
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----~  199 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----D  199 (457)
T ss_pred             CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC----C
T ss_conf             679998889515558899986898799826667774479814844646420689999999874909998667799----6


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC-EEE
Q ss_conf             8721699972133211000002320453-121
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR-RPY  276 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn  276 (466)
                          +++     +...-++|.|++++|. +|+
T Consensus       200 ----it~-----~~L~~e~Dav~l~~G~~~~~  222 (457)
T COG0493         200 ----ITL-----EELLKEYDAVFLATGAGKPR  222 (457)
T ss_pred             ----CCH-----HHHHHHHCEEEEECCCCCCC
T ss_conf             ----789-----99865328799932667887


No 258
>PRK06996 hypothetical protein; Provisional
Probab=97.80  E-value=3.2e-05  Score=56.52  Aligned_cols=59  Identities=8%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+++.++.+..+..+..+....+++.++... ++...++.++.++-|-|...++.
T Consensus       119 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~i~a~llVgaDG~~S~vR  177 (397)
T PRK06996        119 AALARAVRGTGVTWLTSTTARAPAQDADGVTLALDT-PQGARTLRARIAVQAEGGLFHDQ  177 (397)
T ss_pred             HHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEECEEEECCCCCHHHH
T ss_conf             999999974898798344514577636745899605-99865998189999599981888


No 259
>PRK05868 hypothetical protein; Validated
Probab=97.79  E-value=4.3e-05  Score=55.60  Aligned_cols=35  Identities=29%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             933199998986689999999987993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      || -|+|+|||+||+++|..|++.|.+|+|+|+.+.
T Consensus         1 ~~-kVlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~   35 (372)
T PRK05868          1 MK-TVLVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99-999989888999999999858998899957999


No 260
>PRK08244 hypothetical protein; Provisional
Probab=97.79  E-value=3.1e-06  Score=63.91  Aligned_cols=18  Identities=6%  Similarity=0.202  Sum_probs=8.4

Q ss_pred             CCHHHHHHHHHHHHCCCC
Q ss_conf             788999999999860897
Q gi|254781053|r  446 PTMSEAVREAALSCFDQP  463 (466)
Q Consensus       446 Pt~~E~l~~aa~~~~~~~  463 (466)
                      |.-...|.+|+..+++++
T Consensus       476 ~d~~~~l~~al~~~~g~~  493 (494)
T PRK08244        476 PNAEQLIADGITRWCGNA  493 (494)
T ss_pred             CCHHHHHHHHHHHHHCCC
T ss_conf             897899999999960889


No 261
>PRK06834 hypothetical protein; Provisional
Probab=97.78  E-value=2.2e-06  Score=64.93  Aligned_cols=17  Identities=24%  Similarity=0.513  Sum_probs=9.6

Q ss_pred             CHHHHHHHHHHHHCCCC
Q ss_conf             88999999999860897
Q gi|254781053|r  447 TMSEAVREAALSCFDQP  463 (466)
Q Consensus       447 t~~E~l~~aa~~~~~~~  463 (466)
                      +..+.+.+|+..||+.|
T Consensus       469 ~~~~~~~~al~~~~g~~  485 (488)
T PRK06834        469 GTDDGLRDALTTWFGPP  485 (488)
T ss_pred             CCCHHHHHHHHHHHCCC
T ss_conf             98366999999975887


No 262
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.78  E-value=8.7e-05  Score=53.35  Aligned_cols=34  Identities=29%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      .++|||||+.|+..|..++++|.+|+|||+.+.+
T Consensus       171 ~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~l  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             6999998678879999998469869999624754


No 263
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.78  E-value=0.00013  Score=52.04  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.+
T Consensus       185 ~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             7999967475899999999549859999853643


No 264
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=97.77  E-value=3.7e-05  Score=56.05  Aligned_cols=35  Identities=34%  Similarity=0.492  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             19999898668999999998799399993799715
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG   38 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G   38 (466)
                      ||+|||||.||.++|..|+++|.+|+|+|+++..+
T Consensus       258 ~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A  292 (660)
T PRK01747        258 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPA  292 (660)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             18998938999999999997899689994798756


No 265
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.77  E-value=4e-05  Score=55.83  Aligned_cols=37  Identities=35%  Similarity=0.573  Sum_probs=34.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             1999989866899999999879939999379971502
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      +|+|||+|+||++||..|+..|.+|+++||++-+||-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGR   39 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGR   39 (331)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             4799756368899999998669579999738875531


No 266
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77  E-value=0.00014  Score=51.75  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.
T Consensus       176 ~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~  208 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             799995858999999999861984789983342


No 267
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.76  E-value=4.8e-05  Score=55.24  Aligned_cols=41  Identities=34%  Similarity=0.526  Sum_probs=38.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE
Q ss_conf             31999989866899999999879939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~   43 (466)
                      =||||+|+|.+|++||..+.+.|.+|+++|..+.+||-|.-
T Consensus         8 ~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t   48 (450)
T COG1231           8 ADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT   48 (450)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEE
T ss_conf             86899897268889999876468189998646776764677


No 268
>KOG0042 consensus
Probab=97.74  E-value=6e-05  Score=54.51  Aligned_cols=40  Identities=38%  Similarity=0.644  Sum_probs=36.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             3319999898668999999998799399993799715025
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      .|||+|||||..|--||+.++-+|+||+|+|+++.-.||-
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042          67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             CCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCC
T ss_conf             5537998888667541212011452147774266457765


No 269
>PRK07045 putative monooxygenase; Reviewed
Probab=97.74  E-value=6.9e-06  Score=61.36  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3199998986689999999987993999937997
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      +||+||||||+|+++|+.|++.|.+|+|+|+.+.
T Consensus         6 ~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~   39 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             8589999288999999999867998999908998


No 270
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.73  E-value=4.1e-06  Score=63.01  Aligned_cols=103  Identities=24%  Similarity=0.288  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC----CC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122----12-----22211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN----GM-----DKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~----~~-----d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      |+++|||+|+-|+-.|..++++|.+|+++++.+.+-.    ..     ..+......+.+++.|++++++.++..-....
T Consensus        18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~~   97 (350)
T PRK12770         18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPPH   97 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCEE
T ss_conf             98999995588999999999789985999536969828998347976668899999999997097697320998502011


Q ss_pred             --CCCEEEEEEECCCCCCCEEEEEEECCCC-EEEE
Q ss_conf             --8721699972133211000002320453-1210
Q gi|254781053|r  246 --GKAQVVYRSTDDEPINIEADAVLVAAGR-RPYT  277 (466)
Q Consensus       246 --~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn~  277 (466)
                        ............+....++|.|++|+|. +|+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~  132 (350)
T PRK12770         98 EEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRK  132 (350)
T ss_pred             EEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCC
T ss_conf             33032035776018987741899999658997735


No 271
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.72  E-value=0.00017  Score=51.21  Aligned_cols=94  Identities=20%  Similarity=0.354  Sum_probs=56.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
Q ss_conf             19999898668999999998799399993799715025136673709899999999999986675581647753289999
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKM   83 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~   83 (466)
                      .++|||||.-|+..|..++++|.+|+|||+.+.+         +|.                        .+  .+..+.
T Consensus       180 ~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~---------L~~------------------------~d--~~~~~~  224 (467)
T PRK07845        180 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV---------LPG------------------------ED--ADAAAV  224 (467)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC---------CCC------------------------CC--HHHHHH
T ss_conf             6999898799999999999739879999955744---------543------------------------18--889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             9999999998777778764004310110011--100-222102357521123221000046766524
Q gi|254781053|r   84 MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIEAKNIVIATGSEAS  147 (466)
Q Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~ad~iviATGs~p~  147 (466)
                                    +...+++.||+++.+..  .+. +.+.+.+...++ +++++|.+++|+|-+|+
T Consensus       225 --------------~~~~l~~~gv~i~~~~~~~~v~~~~~~~~v~~~~g-~~i~~d~vl~a~Gr~Pn  276 (467)
T PRK07845        225 --------------LEEVFARRGMTLLKRSRAESVTRTGDGVLVTLTDG-RTVEGSHALMAVGSVPN  276 (467)
T ss_pred             --------------HHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCC-CEEEEEEEEEECCCCCC
T ss_conf             --------------99999976909972887999998098269998899-79987799995450255


No 272
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.70  E-value=6.6e-05  Score=54.24  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=31.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
Q ss_conf             9331999989866899999999879-9399993799715
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYG   38 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~G   38 (466)
                      ||  |+|||||+||+++|+.|++.| .+|+|+|+.+.+.
T Consensus         1 mk--V~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~   37 (414)
T TIGR03219         1 LR--VAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             98--99999448999999999853999889994289888


No 273
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.70  E-value=5.5e-06  Score=62.09  Aligned_cols=61  Identities=11%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             CCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             122222222-22222322002344201468721699972133211000002320453121036
Q gi|254781053|r  218 AAHCLKIMS-KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       218 ~~~~~~~l~-~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      .+.+.+.+. ..+|+++++.++++++.+++++.+.+...++ .+++++|.|+-|-|....+..
T Consensus       110 ~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~-~~~~~adlvIGADGi~S~vR~  171 (400)
T PRK06475        110 QSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNS-VETVSAAYLIACDGVWSMLRQ  171 (400)
T ss_pred             HHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCC-CEEEECCEEEECCCCCCCHHH
T ss_conf             99999999748994897387899999528960489973898-669970689966997631333


No 274
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.67  E-value=5.9e-06  Score=61.85  Aligned_cols=97  Identities=20%  Similarity=0.328  Sum_probs=66.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHC---CCCHHHHHHCCCCC-----CC-----CC-CCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             321012344543320132201---22011100001112-----21-----22-221122222222222223220023442
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRL---GSCVKIIEHSGTIL-----NG-----MD-KEIAAHCLKIMSKQGMNFQLNSKVSSV  241 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~l---G~~Vtli~~~~~ll-----~~-----~d-~~~~~~~~~~l~~~gV~i~~~~~v~~i  241 (466)
                      ++||||||+-|+.+|..|++.   +.+||||++++...     |.     ++ .++.-.+.+.+.+.|++++.+ +|++|
T Consensus         1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~V~~I   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEECCHHHHHHHCCCEEEEE-EEEEE
T ss_conf             99999960999999999704178998399999988651625169997404779992216899997779499963-78999


Q ss_pred             HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             01468721699972133211000002320453121036
Q gi|254781053|r  242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      +..+.  .|++.  ++  .++++|.+++|+|.+|+...
T Consensus        80 D~~~k--~V~~~--~g--~~l~YD~LViAtGs~~~~~~  111 (364)
T TIGR03169        80 DPDRR--KVLLA--NR--PPLSYDVLSLDVGSTTPLSG  111 (364)
T ss_pred             ECCCC--EEEEC--CC--CEEECCEEEEECCCCCCCCC
T ss_conf             76889--89988--99--88736889994367778899


No 275
>PRK07236 hypothetical protein; Provisional
Probab=97.66  E-value=7.2e-05  Score=53.96  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             319999898668999999998799399993799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      --|+|||||+||+++|+.|++.|.+|+|+|+.+
T Consensus         7 ~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~   39 (386)
T PRK07236          7 PRAVVVGGSLGGLFAANLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             968999936899999999985899989986899


No 276
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971   This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=97.65  E-value=5.6e-05  Score=54.74  Aligned_cols=197  Identities=11%  Similarity=0.097  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCCC---CCCCCCHHHHHHHCC-----CCCCEEEEEEECCCCCC---CEEEEEEECCCCEEEECCCCCEEEE
Q ss_conf             122222222222---223220023442014-----68721699972133211---0000023204531210367840000
Q gi|254781053|r  218 AAHCLKIMSKQG---MNFQLNSKVSSVKKV-----KGKAQVVYRSTDDEPIN---IEADAVLVAAGRRPYTKGLGLEEIG  286 (466)
Q Consensus       218 ~~~~~~~l~~~g---V~i~~~~~v~~i~~~-----~~~~~v~~~~~~g~~~~---i~~D~vl~a~G~~Pn~~~l~Le~~g  286 (466)
                      .+.+.+.+.+..   |.++...+++++..+     .+.+.+++.++    .+   +.++.||-|-|+.-.+.    +.+|
T Consensus       126 ~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~G----~~~~~l~a~LlvgADG~~S~vR----~~~g  197 (445)
T TIGR01988       126 QQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSDEVELTLSDG----RQKLLLRARLLVGADGANSKVR----QLAG  197 (445)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEECCC----CEEEEEEECEEEEECCCCHHHH----HHHC
T ss_conf             9999999996689647751672147740367756886079997089----4767898532787358652579----9718


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCC--CCCC---CCCC--CCCCCCEEEHH-HHH
Q ss_conf             12676422333776333026848702433354344300012320120111--2222---2223--33322100014-455
Q gi|254781053|r  287 INIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS--GQKG---HVNY--GIIPSVVYTHP-EVA  358 (466)
Q Consensus       287 i~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~--~~~~---~~~~--~~ip~~vft~p-eia  358 (466)
                      |+....     =+|.||.+        |+.-   .| ...+.-.|.+.+.  ..+-   ++.-  +.-.+.|||.| +-|
T Consensus       198 I~~~~~-----R~Y~Q~a~--------Va~v---~~-~~~h~~~A~erF~~~~GP~AlLPL~~~dd~~~slVW~~~~~~A  260 (445)
T TIGR01988       198 IPTTGW-----RDYGQSAV--------VANV---KH-ERPHQGTAWERFLPDTGPLALLPLPDNDDNRSSLVWTLPPEEA  260 (445)
T ss_pred             CCCCEE-----ECCCCEEE--------EEEE---EE-CCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHH
T ss_conf             884301-----16455389--------9999---71-4788964799982799857873588888960389973897999


Q ss_pred             H--HHHCHHHHHH---CCCCEEEE----------------------------EEEECCCCHH------HHCCCCCEEEEE
Q ss_conf             1--0014788862---34665899----------------------------9960447034------418898338999
Q gi|254781053|r  359 S--IGKTEEQLKC---EKKSYKVG----------------------------KFPFSANGRA------RSMNSIDGFVKI  399 (466)
Q Consensus       359 ~--vGlte~~a~~---~~~~~~v~----------------------------~~~~~~~~ra------~~~~~~~g~~kl  399 (466)
                      .  ..|++++-.+   +-.....+                            ++.....-.+      +....-.--+=|
T Consensus       261 ~~L~~l~~~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~R~~fPL~~~~A~~yv~~R~aL  340 (445)
T TIGR01988       261 ERLLALDDEEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGERAAFPLSLRHAKRYVAPRLAL  340 (445)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCHHHHHHHHHCCCEEE
T ss_conf             99867899899999999853315796556789999999873202440068237887687630440334358762598589


Q ss_pred             EEECC-CCEEEEEEEEC---CCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99789-98699999982---998899999999998789878996
Q gi|254781053|r  400 LANEK-SDRVEGVHIIG---GSAGEMIHEAAVLMEFGGSSEDLA  439 (466)
Q Consensus       400 i~~~~-~~~ilG~~~vg---~~a~eli~~~a~ai~~~~t~~~l~  439 (466)
                      |=|.. +=.=|++|-+-   .++..|+..+.-+.+.|..+-+..
T Consensus       341 iGDAAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~  384 (445)
T TIGR01988       341 IGDAAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLA  384 (445)
T ss_pred             EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             80541357871001002007899999999999884566857777


No 277
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.65  E-value=6.6e-05  Score=54.24  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             933199998986689999999987993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |+||+||||+|+||-..|.+|++.|.+|+|+|.++.
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             889989989871368999998579982899957888


No 278
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.63  E-value=4.4e-05  Score=55.48  Aligned_cols=263  Identities=15%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE--CCCC
Q ss_conf             933199998986689999999987--993999937997150251366737098999999999999866755816--4775
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGIN--IASC   76 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~--~~~~   76 (466)
                      ++||||+||||.-+-+.+.-+.++  .++++|+|+-+..+-.       -|. -|+.|..-+.   ...++.+.  -.+.
T Consensus         8 ~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~E-------SS~-~wNNAGTGHa---a~CELNYTp~~~dG   76 (499)
T PRK05257          8 SKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALE-------SSN-GWNNAGTGHS---ALCELNYTPEQADG   76 (499)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHH-------HCC-CCCCCCCCHH---HHHHCCCCCCCCCC
T ss_conf             866689999528899999999970998748999924600545-------076-6554544021---30221488776798


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             328999999999999987777787640043101100111002--221023575211232210000467665244457665
Q gi|254781053|r   77 HLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVS--NNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSI  154 (466)
Q Consensus        77 ~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~--~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~  154 (466)
                      .+|.++.+.-...+--. .+....+.+. |+  +..-..|+.  ||--.|.+.+....++.++--+.  ..| -+++++.
T Consensus        77 ~i~i~KA~~Ine~Fe~S-rQfWs~lv~~-g~--l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~--~~~-lF~~Mef  149 (499)
T PRK05257         77 SIDISKAVKINEQFQIS-RQFWAYLVEK-GV--LPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALK--ASP-LFAGMEF  149 (499)
T ss_pred             CCCHHHHHHHHHHHHHH-HHHHHHHHHC-CC--CCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH--CCC-CCCCCEE
T ss_conf             37089999999999999-9999999975-88--7896885356883478888587899999999874--386-8788575


Q ss_pred             CCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             321002453057411111-1333210123445433201322012201110000111221222211222222222-22223
Q gi|254781053|r  155 DFDEQVIVSSTGALSFSS-VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSK-QGMNF  232 (466)
Q Consensus       155 ~~~~~~~~t~~~~~~l~~-~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-~gV~i  232 (466)
                               ++|.-.+.+ .|   +++-|-.-.=-+|-.....|++|..=            .+.+.+.+.|.+ .++++
T Consensus       150 ---------sed~~~i~~W~P---Lvm~gR~~~e~vAaTr~~~GTDVnFG------------aLT~~l~~~l~~~~~~~l  205 (499)
T PRK05257        150 ---------SEDPAQIKEWAP---LMMEGRDPSEKVAATRIEIGTDVNFG------------ALTRQLVGYLQKQGNFEL  205 (499)
T ss_pred             ---------CCCHHHHHHHCC---HHCCCCCCCCCEEEEECCCCCCCCHH------------HHHHHHHHHHHHCCCEEE
T ss_conf             ---------479999986354---30069998985005834787545689------------999999999975898389


Q ss_pred             CCCHHHHHHHCCCCC-CEEEEEEE-CCCCCCCEEEEEEECCCCEEEECCCCCEEEECC--CCCCCCCCCCCCCEEECCCC
Q ss_conf             220023442014687-21699972-133211000002320453121036784000012--67642233377633302684
Q gi|254781053|r  233 QLNSKVSSVKKVKGK-AQVVYRST-DDEPINIEADAVLVAAGRRPYTKGLGLEEIGIN--IDHRGCIEIGGQFQTSISTI  308 (466)
Q Consensus       233 ~~~~~v~~i~~~~~~-~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~--~~~~G~I~vd~~~~Ts~p~I  308 (466)
                      +++.+|+.+.+..++ ..+.+++. .++..++.++.|++..|=-.- .  -|.+.||.  .+=.|+++--.+++|++|.|
T Consensus       206 ~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG~aL-~--LLQksgI~E~~gygGFPVsG~~L~c~npei  282 (499)
T PRK05257        206 QLGHEVRDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL-P--LLQKSGIPEAKGYGGFPVSGQFLVCENPEV  282 (499)
T ss_pred             EECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCCHHH-H--HHHHCCCCHHCCCCCCCCCCEEEECCCHHH
T ss_conf             9368875608889998799999878897279982569988881457-8--898839923127566760456883399899


No 279
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.63  E-value=0.00027  Score=49.77  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      .++|||||+-|+..|..++++|.+|+|||+.+.+
T Consensus       170 ~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l  203 (453)
T PRK07846        170 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRL  203 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCC
T ss_conf             4999899757999999999529926899746532


No 280
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.61  E-value=7.3e-06  Score=61.17  Aligned_cols=136  Identities=17%  Similarity=0.246  Sum_probs=71.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---------EEEEEECCCCHHHHHHHHHHHHHHHHH-HHH-CC
Q ss_conf             3319999898668999999998799399993799715---------025136673709899999999999986-675-58
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG---------GTCLNIGCIPSKALLHASEMYSHIAKE-AGD-LG   70 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G---------GtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~-~g   70 (466)
                      +|||+||||||+|+++|+.|++.|.+|+|||+.+...         ..+++.   .|..++..-.++..+... ... ..
T Consensus         6 ~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~---~s~~~L~~lGl~~~i~~~~~~p~~~   82 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAA---DNAALLDRLGVWPAVRAARVQPYRR   82 (392)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHCCCCCEEE
T ss_conf             9988999906999999999986699789991789875556888736999988---9999999879816677516773135


Q ss_pred             EEC------CCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCCCC
Q ss_conf             164------7753289999--------9999999998777778764004310110011--10-02221023575211232
Q gi|254781053|r   71 INI------ASCHLDLKKM--------MSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEETI  133 (466)
Q Consensus        71 ~~~------~~~~~d~~~~--------~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~~i  133 (466)
                      +..      ....++...+        +++ ..+.+.    ....+...+|++..+..  .+ .+...+.+..+++. ++
T Consensus        83 ~~v~d~~~~~~~~~~~~~~~~~~lg~iv~~-~~l~~~----L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~-~i  156 (392)
T PRK08773         83 MRVWDAGGGGELGFDADTLGREQLGWIVEN-DLLVDR----LWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGS-RL  156 (392)
T ss_pred             EEEEECCCCCEEEECHHHCCCCCCCCEEEH-HHHHHH----HHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCC-EE
T ss_conf             899845898347536566285456532254-999999----999986089989748689999966985899977997-99


Q ss_pred             CCEEECCCCCCCC
Q ss_conf             2100004676652
Q gi|254781053|r  134 EAKNIVIATGSEA  146 (466)
Q Consensus       134 ~ad~iviATGs~p  146 (466)
                      +++.+|-|-|++.
T Consensus       157 ~a~lvVgaDG~~S  169 (392)
T PRK08773        157 EAALAIAADGAAS  169 (392)
T ss_pred             EEEEEEECCCCCC
T ss_conf             9889998378874


No 281
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.60  E-value=9.8e-06  Score=60.24  Aligned_cols=88  Identities=28%  Similarity=0.363  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             33210123445433201322012201110000111-------22--1222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI-------LN--GMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l-------l~--~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-||-+|+-+++.|-+||++|.-+.+       .|  ++|+++.+.=.+.|++.||+|+++.-|-+     
T Consensus       143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvGk-----  217 (462)
T TIGR01316       143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVGK-----  217 (462)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECC-----
T ss_conf             779998468214688999974798699997148998567536888548757889888876326637994437505-----


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             8721699972133211000002320453
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                         .+++..   =-.++-+|.|++++|-
T Consensus       218 ---t~TL~e---L~~~YGfDAVFIgtGA  239 (462)
T TIGR01316       218 ---TVTLEE---LLEKYGFDAVFIGTGA  239 (462)
T ss_pred             ---CHHHHH---HHHHCCCCEEEEEECC
T ss_conf             ---112888---8875197079995068


No 282
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.59  E-value=0.0001  Score=52.76  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC--CCEE
Q ss_conf             199998986689999999987--993999937997--1502
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT--YGGT   40 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~--~GGt   40 (466)
                      |++|||||+||++.|.++.+.  +++|+|||+++.  +.++
T Consensus         1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d   41 (374)
T pfam05834         1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNN   41 (374)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             98999952999999999974089981999978988888998


No 283
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006   Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other .   Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups.   This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=97.58  E-value=8.8e-05  Score=53.30  Aligned_cols=30  Identities=47%  Similarity=0.673  Sum_probs=29.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC---CCEEEEEC
Q ss_conf             1999989866899999999879---93999937
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLK---NKVAIIEK   33 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~   33 (466)
                      ||||||||-|||-||+++++.|   ++|+||-|
T Consensus         1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisK   33 (636)
T TIGR01812         1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISK   33 (636)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             978881866899999999735779610799955


No 284
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.57  E-value=1.1e-05  Score=59.82  Aligned_cols=99  Identities=21%  Similarity=0.335  Sum_probs=65.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHC--CCCHHHHHHCCCCC-CCC----------CCCCCCCCCCCCCCCC-CCCCCCHHHH
Q ss_conf             33321012344543320132201--22011100001112-212----------2221122222222222-2232200234
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRL--GSCVKIIEHSGTIL-NGM----------DKEIAAHCLKIMSKQG-MNFQLNSKVS  239 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~l--G~~Vtli~~~~~ll-~~~----------d~~~~~~~~~~l~~~g-V~i~~~~~v~  239 (466)
                      .+++||||||+-|++.|.-+.+.  +.+||||++.+..+ ..+          +.++.-.+.+.+++.+ |++..+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE
T ss_conf             7569998986799999997641678871899918876666303355632877756521308998423574489997-899


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             4201468721699972133211000002320453121036
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      +|+..+.  +|++.+    ...+++|.+++|+|..+++-+
T Consensus        82 ~ID~~~k--~V~~~~----~~~i~YD~LVvalGs~~~~fg  115 (405)
T COG1252          82 DIDRDAK--KVTLAD----LGEISYDYLVVALGSETNYFG  115 (405)
T ss_pred             EECCCCC--EEEECC----CCCCCCCEEEEECCCCCCCCC
T ss_conf             9715679--899578----870236389994587667689


No 285
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56  E-value=0.00094  Score=45.82  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             199998986689999999987993999937997
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      .++|||||+.|+..|..++++|.+|+|||+.+.
T Consensus       176 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~  208 (472)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             599995647289999999852986899960455


No 286
>KOG0399 consensus
Probab=97.56  E-value=3.2e-05  Score=56.55  Aligned_cols=87  Identities=25%  Similarity=0.485  Sum_probs=65.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             3321012344543320132201220111000011122-------1--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN-------G--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~-------~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+.|+-.|..|++.|..||+.+|+||+..       .  .|+-+.+.-.+.|+++||++.+|+++-+-    
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~---- 1861 (2142)
T KOG0399        1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH---- 1861 (2142)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCC----
T ss_conf             4799974684146689998644767999971577674566168752132799999999988618548850322565----


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             87216999721332110000023204531
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                          +..   +  ...-+.|.|++|+|..
T Consensus      1862 ----vs~---d--~l~~~~daiv~a~gst 1881 (2142)
T KOG0399        1862 ----VSL---D--ELKKENDAIVLATGST 1881 (2142)
T ss_pred             ----CCH---H--HHHHCCCEEEEEECCC
T ss_conf             ----567---8--8753057599982788


No 287
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.56  E-value=7.8e-06  Score=60.97  Aligned_cols=136  Identities=21%  Similarity=0.261  Sum_probs=68.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--E--------EEEEECCCCHHHHHHHHHHHHHHHHH-HHHC-C
Q ss_conf             319999898668999999998799399993799715--0--------25136673709899999999999986-6755-8
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG--G--------TCLNIGCIPSKALLHASEMYSHIAKE-AGDL-G   70 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G--G--------tC~~~GCiPsK~l~~~a~~~~~~~~~-~~~~-g   70 (466)
                      |||+||||||+|+++|+.|++.|.+|+|||+.+...  .        ..++.   +|..++..-.++..+... ...+ .
T Consensus         6 ~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~---~s~~~L~~lGvw~~~~~~~~~~~~~   82 (391)
T PRK08020          6 TEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISA---ASVALLKGLGVWDAVQAMRCHPYRR   82 (391)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCCCCEEE
T ss_conf             8489999369999999999866997899948998766655798733898788---9999999888848778625687148


Q ss_pred             E---ECCC--CCCCHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCCCC
Q ss_conf             1---6477--5328999--------99999999998777778764004310110011--100-22210235752112322
Q gi|254781053|r   71 I---NIAS--CHLDLKK--------MMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEETIE  134 (466)
Q Consensus        71 ~---~~~~--~~~d~~~--------~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~i~  134 (466)
                      +   +...  ..+|...        +++. ..+.+.+.+   ..-+..+|+++.+..  .+. ++..+.+..+++ ++++
T Consensus        83 ~~~~~~~~~~~~f~~~~~~~~~lg~~v~~-~~l~~~L~~---~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g-~~i~  157 (391)
T PRK08020         83 LETWEWETAHVVFDAAELKLPELGYMVEN-RVLQQALWQ---ALEAHPNVTLRVPASLIALHRHDDGWELELADG-ETIQ  157 (391)
T ss_pred             EEEECCCCCEEEECHHHCCCCCCCCCCCH-HHHHHHHHH---HHHHCCCCEEEECCEEEEEEECCCEEEEEECCC-CEEE
T ss_conf             98612788558725443289754012126-999999999---998389969995880268897498689994899-9998


Q ss_pred             CEEECCCCCCCC
Q ss_conf             100004676652
Q gi|254781053|r  135 AKNIVIATGSEA  146 (466)
Q Consensus       135 ad~iviATGs~p  146 (466)
                      ++.+|-|-|.+.
T Consensus       158 a~lvIgADG~~S  169 (391)
T PRK08020        158 AKLVIGADGANS  169 (391)
T ss_pred             ECEEEEECCCCC
T ss_conf             379999079970


No 288
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.55  E-value=6.4e-06  Score=61.58  Aligned_cols=88  Identities=23%  Similarity=0.328  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             332101234454332013220122011100001112-------21--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-|+-+|..|+++|.+||++++.+++.       |.  ++.++.+.=.+.|++.||+|++|+.+-+--..+
T Consensus       433 gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~VGkditl~  512 (993)
T PRK12775        433 GKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVVGKTFTIP  512 (993)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEECCCCCHH
T ss_conf             80899783788999999999779964897168889972684377767888999999999987894998388865607899


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             8721699972133211000002320453
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +     +.      ..-.+|.|++++|-
T Consensus       513 e-----L~------~e~gyDAVFIg~GA  529 (993)
T PRK12775        513 Q-----LM------NDRGFDAVFVAAGA  529 (993)
T ss_pred             H-----HH------HCCCCCEEEEECCC
T ss_conf             9-----95------34598989995587


No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.55  E-value=0.0003  Score=49.44  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      -++|||||+-|+..|..++++|.+|+|||+.+.+
T Consensus       171 ~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~l  204 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             6999888689999999999619949999967622


No 290
>PRK09126 hypothetical protein; Provisional
Probab=97.55  E-value=1.3e-05  Score=59.38  Aligned_cols=138  Identities=20%  Similarity=0.277  Sum_probs=71.5

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-------CC--EEEEEECCCCHHHHHHHHHHHHHHHHHH-HH-C
Q ss_conf             933199998986689999999987993999937997-------15--0251366737098999999999999866-75-5
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT-------YG--GTCLNIGCIPSKALLHASEMYSHIAKEA-GD-L   69 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~-------~G--GtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~-~   69 (466)
                      |+|||+||||||+|+++|+.|+++|.+|+|||+.+.       .-  +.+++.   +|.-++..-.++..+.... .. .
T Consensus         2 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~---~s~~~L~~lG~~~~l~~~~~~~~~   78 (392)
T PRK09126          2 MHSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTH---ASREILQRLGAWDRIPEAEISPLR   78 (392)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf             98999999925899999999986899899990898533457788862898689---999999987896677750767414


Q ss_pred             CEEC---C-CCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCC
Q ss_conf             8164---7-7532899----------999999999998777778764004310110011--100-222102357521123
Q gi|254781053|r   70 GINI---A-SCHLDLK----------KMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEET  132 (466)
Q Consensus        70 g~~~---~-~~~~d~~----------~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~  132 (466)
                      ....   . ...+++.          .++.+ ..+.+.+.   +...+..+|++..|..  .+. ++..+.|...++ ++
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~lg~~v~~-~~l~~~L~---~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g-~~  153 (392)
T PRK09126         79 DAKVLNGRSPFALTFDARGTGADALGYLVPN-HLIRRAAY---EAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANG-RR  153 (392)
T ss_pred             EEEEECCCCCEEEEECCCCCCCCCCCEECCH-HHHHHHHH---HHHHHCCCCEEECCCEEEEEEECCCEEEEEECCC-CE
T ss_conf             6899528875047504755676665000219-99999999---9998589969986988899997598059998589-88


Q ss_pred             CCCEEECCCCCCCC
Q ss_conf             22100004676652
Q gi|254781053|r  133 IEAKNIVIATGSEA  146 (466)
Q Consensus       133 i~ad~iviATGs~p  146 (466)
                      ++++.+|-|=|++.
T Consensus       154 i~a~llVgADG~~S  167 (392)
T PRK09126        154 LTARLLVAADSRFS  167 (392)
T ss_pred             EEEEEEEEECCCCC
T ss_conf             88779998068886


No 291
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.54  E-value=1.5e-05  Score=58.92  Aligned_cols=139  Identities=18%  Similarity=0.285  Sum_probs=69.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC----E--EEEEECCCCHHHHHHHHHHHHHHHHHHHHC-CEEC
Q ss_conf             93319999898668999999998799399993799715----0--251366737098999999999999866755-8164
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG----G--TCLNIGCIPSKALLHASEMYSHIAKEAGDL-GINI   73 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G----G--tC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-g~~~   73 (466)
                      |-|||+||||||+|+++|+.|+++|.+|+|||+.+.-.    |  .+++-   .|.-++..-.++..+......+ .+..
T Consensus        16 ~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~~ra~~l~~---~s~~iL~~lGl~~~i~~~~~~~~~i~~   92 (413)
T PRK07364         16 LDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAKGQAYALSL---LSARIFEGIGVWEKILPHIGPFRQIQL   92 (413)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHHCCCCCEEEE
T ss_conf             98998999927999999999986899889991799766678873899589---999999987996898861475425999


Q ss_pred             ---CC-C--CCCHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCC--CCCCCCCCCCCCCC
Q ss_conf             ---77-5--328999--------99999999998777778764004310110011--10-0222--10235752112322
Q gi|254781053|r   74 ---AS-C--HLDLKK--------MMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNN--KILVKGSSSEETIE  134 (466)
Q Consensus        74 ---~~-~--~~d~~~--------~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~--~v~V~~~~~~~~i~  134 (466)
                         .. .  .++...        +.++ ..+.+.+.+.   .....+|+++.+..  .+ .+.+  ++.+...+++++++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~l~~~L~~~---~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~  168 (413)
T PRK07364         93 SDADFPGVVRFSPEDLGTEALGYVGEH-QVLLEALQEF---VQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQ  168 (413)
T ss_pred             EECCCCCEEEECHHHCCCCCCEEEHHH-HHHHHHHHHH---HHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEEE
T ss_conf             818987467516554388754233002-9999999999---984899489828779999976983699998299138998


Q ss_pred             CEEECCCCCCCC
Q ss_conf             100004676652
Q gi|254781053|r  135 AKNIVIATGSEA  146 (466)
Q Consensus       135 ad~iviATGs~p  146 (466)
                      ++.+|-|=|++.
T Consensus       169 a~llIgaDG~~S  180 (413)
T PRK07364        169 SKLVVAADGARS  180 (413)
T ss_pred             EEEEEEECCCCC
T ss_conf             568999318885


No 292
>KOG1336 consensus
Probab=97.53  E-value=0.00081  Score=46.30  Aligned_cols=96  Identities=13%  Similarity=0.251  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCC--CHHHHHHCCCCCCC-------C----CCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             332101234454332013220122--01110000111221-------2----2221122222222222223220023442
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGS--CVKIIEHSGTILNG-------M----DKEIAAHCLKIMSKQGMNFQLNSKVSSV  241 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~--~Vtli~~~~~ll~~-------~----d~~~~~~~~~~l~~~gV~i~~~~~v~~i  241 (466)
                      ++++|+|+|+-|.=++..++..|-  +.+|+.+.. ++|.       +    ..+++....+..++.||++++++.++++
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~-~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~  153 (478)
T KOG1336          75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY-LLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA  153 (478)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCEEEEE
T ss_conf             44999768820335576677528876607874233-47654000133201014562105826676538237970305886


Q ss_pred             HCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             014687216999721332110000023204531210
Q gi|254781053|r  242 KKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       242 ~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +-.+.    ++..++|  +++++|.+++|+|..|++
T Consensus       154 D~~~K----~l~~~~G--e~~kys~LilATGs~~~~  183 (478)
T KOG1336         154 DLASK----TLVLGNG--ETLKYSKLIIATGSSAKT  183 (478)
T ss_pred             ECCCC----EEEECCC--CEEECCEEEEEECCCCCC
T ss_conf             41465----7996798--353010699961576665


No 293
>KOG4254 consensus
Probab=97.53  E-value=9.8e-05  Score=52.96  Aligned_cols=48  Identities=31%  Similarity=0.603  Sum_probs=44.0

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCH
Q ss_conf             331999989866899999999879939999379971502513667370
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPS   49 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPs   49 (466)
                      .||+||||+|..|+.||.++++.|.+|++.|+....||..+..--||-
T Consensus        14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG   61 (561)
T KOG4254          14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG   61 (561)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEHHCCC
T ss_conf             546699658866344789997538606999986304763201000365


No 294
>PRK06753 hypothetical protein; Provisional
Probab=97.52  E-value=1.2e-05  Score=59.53  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+.+.  .++++.++++++..++++.+++.++  +  +.++|.|+-|-|....+.
T Consensus       102 ~~L~~~~~~~--~i~~~~~~~~i~~~~~~v~v~~~dg--~--~~~~DlvVGADG~~S~vR  155 (373)
T PRK06753        102 DIIKSYVKED--TIFTNHEVTKIENETDKVTIHFAEQ--E--SEAFDLCIGADGIHSVVR  155 (373)
T ss_pred             HHHHHHCCCC--EEEECCEEEEEEEECCEEEEEECCC--C--EEEEEEEEECCCCCCHHH
T ss_conf             9998747458--7995889999993099899998799--7--988879997488776788


No 295
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.51  E-value=1.1e-05  Score=59.77  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=44.9

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCC
Q ss_conf             22222222222223220023442014687216999721332110000023204531210367840000126
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINI  289 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~  289 (466)
                      +.+.+.+.+.+|.++.++++++++..++++.+++.  ++  +++.++.|+-|-|....+..    .+|++.
T Consensus       116 ~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l~--~g--~~i~a~llVgADG~~S~vR~----~~gi~~  178 (405)
T PRK05714        116 DALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA--DG--RQLRAPLVVAADGANSAVRR----LAGCAT  178 (405)
T ss_pred             HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC--CC--CEEECCEEEECCCCCCHHHH----HCCCCC
T ss_conf             99999997279889848789999983880799967--99--79863889995899856665----135675


No 296
>KOG2404 consensus
Probab=97.50  E-value=0.0013  Score=44.69  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=35.1

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             19999898668999999998799399993799715025
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      -|||||+|-||++|+.++-..|-.|+|+|+...+||..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404          11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             07998774032356777874487599982467767752


No 297
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.49  E-value=1.6e-05  Score=58.66  Aligned_cols=34  Identities=41%  Similarity=0.657  Sum_probs=32.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9331999989866899999999879939999379
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      |++||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~   34 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             9854999997899999999998289968999077


No 298
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.48  E-value=0.00055  Score=47.53  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -++|||||+-|+..|.-++++|.+|+|++++.
T Consensus       224 ~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~  255 (541)
T PTZ00052        224 KTLVVGASYVALECAGFLNSLGFDVTVAVRSI  255 (541)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             28998986999999999997598589995377


No 299
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.48  E-value=0.0002  Score=50.65  Aligned_cols=42  Identities=36%  Similarity=0.535  Sum_probs=36.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEE
Q ss_conf             3319999898668999999998799399993799--71502513
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK--TYGGTCLN   43 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~--~~GGtC~~   43 (466)
                      .|||+|+|+|-||+.||.+++.+|++|+++|.+.  .+||+..+
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW   48 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW   48 (552)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
T ss_conf             44279987527988999988726765999705554565651343


No 300
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.45  E-value=0.00016  Score=51.50  Aligned_cols=68  Identities=24%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCC--CCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE-CCCCCEEEE-CCC
Q ss_conf             21122222222222223220023442014--687216999721332110000023204531210-367840000-126
Q gi|254781053|r  216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKV--KGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT-KGLGLEEIG-INI  289 (466)
Q Consensus       216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~-~~l~Le~~g-i~~  289 (466)
                      ...+++++.....|-.++.+++|.+|+.+  .++..|+++...   ..+.+..++++.|  |=+ ..| |..++ |++
T Consensus       149 ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~---~sy~a~~lvvtaG--aW~s~kL-l~~l~Gie~  220 (401)
T TIGR01377       149 KALRALQELAEAHGAIVRDGTKVVEIKPDGESGELLVTVKTTK---DSYQAKKLVVTAG--AWTSNKL-LKKLGGIEL  220 (401)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCCCEEEEEEEC---CEEECCEEEEECC--CCHHHHH-CCCCCCEEC
T ss_conf             8999999999874968734860366542676789548999727---7032135789538--8612343-130142326


No 301
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278   These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason.    Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.40  E-value=0.00023  Score=50.30  Aligned_cols=80  Identities=35%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCC-CEEEEECCCCCCEE-EEEECCCCHHHHHH-HHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             3319999898668999999998-799-39999379971502-51366737098999-99999999986675581647753
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQ-LKN-KVAIIEKEKTYGGT-CLNIGCIPSKALLH-ASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~-~G~-~V~lIE~~~~~GGt-C~~~GCiPsK~l~~-~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      .|||||||||-=||+.|-+||+ +|- +|+++||+..-||. .=|.=-|=|--|+. ++.+|.+..+.     |+.-+-+
T Consensus        30 ~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kL-----weGLs~d  104 (407)
T TIGR01373        30 EYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKL-----WEGLSQD  104 (407)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH-----HHCHHHH
T ss_conf             54678886886068999998864694068998506216886643421465410264522378889888-----6120012


Q ss_pred             CCHHHHHHH
Q ss_conf             289999999
Q gi|254781053|r   78 LDLKKMMSY   86 (466)
Q Consensus        78 ~d~~~~~~~   86 (466)
                      +++..++..
T Consensus       105 LNYNvM~Sq  113 (407)
T TIGR01373       105 LNYNVMFSQ  113 (407)
T ss_pred             CCHHHHHHH
T ss_conf             020011213


No 302
>PRK07236 hypothetical protein; Provisional
Probab=97.39  E-value=2.5e-05  Score=57.24  Aligned_cols=45  Identities=16%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2232200234420146872169997213321100000232045312103
Q gi|254781053|r  230 MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       230 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..++++.++++++.+++++.+++.  +|+  ++++|.|+-|-|....+.
T Consensus       113 ~~i~~g~~v~~v~~~~~~v~v~~~--dG~--~~~adlvVGADG~~S~vR  157 (386)
T PRK07236        113 EHYHAGEALERVEQDGDRVTAHFA--DGR--EETADLLIGADGGRSAVR  157 (386)
T ss_pred             CEEEECCEEEEEEEECCEEEEEEC--CCC--EEEEEEEEECCCCCCCHH
T ss_conf             889959999999982997999987--998--877628996588775158


No 303
>PRK07190 hypothetical protein; Provisional
Probab=97.39  E-value=1.7e-05  Score=58.55  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=23.3

Q ss_pred             HHCCCEEEEEEEEE--E-CCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             40043101100111--0-022210235752112322100004676652
Q gi|254781053|r  102 LKKNKIITYHGSAR--I-VSNNKILVKGSSSEETIEAKNIVIATGSEA  146 (466)
Q Consensus       102 ~~~~~V~~~~g~a~--~-~~~~~v~V~~~~~~~~i~ad~iviATGs~p  146 (466)
                      +...++++..++.-  | .+...+.+...++ ++++++++|=|=|++.
T Consensus       119 ~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~g-e~i~a~ylVGcDGa~S  165 (480)
T PRK07190        119 LKETAAAVKRSTAIVNIEINEAGCLTTLANG-ERIQSRYVIGADGSRS  165 (480)
T ss_pred             HHHCCCEEEECCEEEEEEECCCCEEEECCCC-CEEEEEEEEEECCCCC
T ss_conf             9866997991528999998589359984899-8998888886067761


No 304
>PRK10262 thioredoxin reductase; Provisional
Probab=97.39  E-value=2e-05  Score=57.96  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC---CCC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             332101234454332013220122011100001---112--------2122-----221122222222222223220023
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG---TIL--------NGMD-----KEIAAHCLKIMSKQGMNFQLNSKV  238 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~---~ll--------~~~d-----~~~~~~~~~~l~~~gV~i~~~~~v  238 (466)
                      -+++|||+|+.|+=.|-.+++.|.++.++++.+   ++.        |++.     +++.+.+.+.+++.++++..+ .+
T Consensus         7 ~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~i~n~pg~~~~i~G~~l~~~~~~q~~~~~~~i~~~-~v   85 (321)
T PRK10262          7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-HI   85 (321)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC-CC
T ss_conf             00999997689999999999869967999605968742005603561788876477999999999999708748941-23


Q ss_pred             HHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE
Q ss_conf             44201468721699972133211000002320453121
Q gi|254781053|r  239 SSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPY  276 (466)
Q Consensus       239 ~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn  276 (466)
                      .+++..++...++.   +.  .++.++.|++|+|..|+
T Consensus        86 ~~i~~~~~~f~v~t---~~--g~~~a~aViiAtG~~~r  118 (321)
T PRK10262         86 NKVDLQNRPFRLTG---DS--GEYTCDALIIATGASAR  118 (321)
T ss_pred             CEEEEECCCEEEEC---CC--CEEEEEEEEEEECCCCC
T ss_conf             15774036519975---89--88999899996468655


No 305
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.38  E-value=3.7e-05  Score=56.06  Aligned_cols=19  Identities=37%  Similarity=0.522  Sum_probs=14.5

Q ss_pred             CCCCCCCCEEECCCCCCCC
Q ss_conf             2112322100004676652
Q gi|254781053|r  128 SSEETIEAKNIVIATGSEA  146 (466)
Q Consensus       128 ~~~~~i~ad~iviATGs~p  146 (466)
                      +..++++++++|=|=|++.
T Consensus       192 g~~~tvrA~YlVGcDGA~S  210 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARS  210 (634)
T ss_pred             CCEEEEEEEEEEECCCCCC
T ss_conf             8437999617987687763


No 306
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.38  E-value=1.3e-05  Score=59.41  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             332101234454332013220122011100001112-------21--222211222222222222232200234420146
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL-------NG--MDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      ++++|||+|+-|+-+|..|++.|.+||++++.+.+.       |.  ++.++.+.-.+.+++.||+|++|+.+-+--..+
T Consensus       307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV~f~~n~~VGk~~tl~  386 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE  386 (944)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECCCCCHH
T ss_conf             86799885768999999999779933999447878855895587666878999999999996783999785647768899


Q ss_pred             CCCEEEEEEECCCCCCCEEEEEEECCCC-EEE
Q ss_conf             8721699972133211000002320453-121
Q gi|254781053|r  246 GKAQVVYRSTDDEPINIEADAVLVAAGR-RPY  276 (466)
Q Consensus       246 ~~~~v~~~~~~g~~~~i~~D~vl~a~G~-~Pn  276 (466)
                                  +-..-.+|.|++++|- .|.
T Consensus       387 ------------eL~~eGydAVfIg~GAg~p~  406 (944)
T PRK12779        387 ------------DLKAEGFWKIFVGTGAGLPT  406 (944)
T ss_pred             ------------HHHHCCCCEEEEEECCCCCC
T ss_conf             ------------99768999899974788875


No 307
>KOG0685 consensus
Probab=97.34  E-value=0.00034  Score=49.04  Aligned_cols=36  Identities=31%  Similarity=0.508  Sum_probs=32.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCC-CCEEEEECCCCCCEE
Q ss_conf             999989866899999999879-939999379971502
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLK-NKVAIIEKEKTYGGT   40 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~~~GGt   40 (466)
                      |||||||.||++||.++-+.| ..++++|..+.+||-
T Consensus        24 IvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR   60 (498)
T KOG0685          24 IVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR   60 (498)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCE
T ss_conf             9998985677999999998289648999704666755


No 308
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.31  E-value=2.9e-05  Score=56.77  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=72.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC--CCCC--------CCC----CCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             333210123445433201322012201110000--1112--------212----22211222222222222232200234
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS--GTIL--------NGM----DKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~--~~ll--------~~~----d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      |=.++|||||+-|+-.|-+.+|.|.++.++...  .++.        +++    -+++++.+.++.++.|+++.....+.
T Consensus       212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~  291 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK  291 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf             88889989678999999999977997699924877531303460044898777579999999999997496899133699


Q ss_pred             HHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             42014687216999721332110000023204531210
Q gi|254781053|r  240 SVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       240 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +++..++...+...  +|  ..+.+..|++|+|.+|+.
T Consensus       292 ~i~~~~~~~~v~~~--~g--~~~~aktVIiATGa~~r~  325 (515)
T TIGR03140       292 KIETEDGLIVVTLE--SG--EVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEECCCCCEEEEEC--CC--CEEEECEEEECCCCCCCC
T ss_conf             99727981899987--99--899939799956987355


No 309
>PTZ00318 NADH dehydrogenase; Provisional
Probab=97.31  E-value=4.9e-05  Score=55.17  Aligned_cols=19  Identities=47%  Similarity=0.788  Sum_probs=9.6

Q ss_pred             EEEECCCHHHHHHHHHHHH
Q ss_conf             9999898668999999998
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQ   23 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~   23 (466)
                      +||+||||.|...|-++++
T Consensus       182 fVVVGGGpTGVElAgeLad  200 (514)
T PTZ00318        182 TVVVGGGPTGVEFAANLAE  200 (514)
T ss_pred             EEEECCCCCHHHHHHHHHH
T ss_conf             7897777620328999999


No 310
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.31  E-value=2.9e-05  Score=56.85  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             1999989866899999999879939999379971
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      +|+|||||.+++..|..+++.+.+|+||.+.+.+
T Consensus       145 ~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f  178 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             6999838889999999999748908999978756


No 311
>KOG1399 consensus
Probab=97.30  E-value=5.9e-05  Score=54.56  Aligned_cols=106  Identities=25%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC--C-------------------------------------
Q ss_conf             3332101234454332013220122011100001112212--2-------------------------------------
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM--D-------------------------------------  214 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~--d-------------------------------------  214 (466)
                      +++++|||+|+.|+=.|-.+.+-|.+|+++||++.+...+  -                                     
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399           6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCC
T ss_conf             78548978566888999999877998369970587454586057656554324342104688444257998975457111


Q ss_pred             ----CCCCCCCCCCCCCCCC--CCCCCHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCE--EEECC
Q ss_conf             ----2211222222222222--232200234420146-87216999721332110000023204531--21036
Q gi|254781053|r  215 ----KEIAAHCLKIMSKQGM--NFQLNSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRR--PYTKG  279 (466)
Q Consensus       215 ----~~~~~~~~~~l~~~gV--~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~--Pn~~~  279 (466)
                          .++-+++....+.-++  .+.+++++.+++..+ +...|..++..+...+..+|.|++|+|--  |++..
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~  159 (448)
T KOG1399          86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ  159 (448)
T ss_pred             CCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             78888999999999873583462673465799840567741689814886405899638999556768898876


No 312
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.30  E-value=0.00066  Score=46.93  Aligned_cols=94  Identities=24%  Similarity=0.352  Sum_probs=56.2

Q ss_pred             EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHHHH
Q ss_conf             99989866899999999879939999379971502513667370989999999999998667558164775328999999
Q gi|254781053|r    6 AVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCHLDLKKMMS   85 (466)
Q Consensus         6 vIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~~d~~~~~~   85 (466)
                      +|||||-=||.||.-|+.+|.+|-+||-.+.+                 .++++++..                 .++  
T Consensus       151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L-----------------M~~QLD~~a-----------------G~l--  194 (813)
T TIGR02374       151 AVIGGGLLGLEAARALKNLGMDVSVIELAPFL-----------------MAKQLDQTA-----------------GRL--  194 (813)
T ss_pred             EEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH-----------------HHHHHHHHH-----------------HHH--
T ss_conf             58867415889999998779706446764898-----------------999999999-----------------999--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEEEE----EECCCC---C-CCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             99999998777778764004310110011----100222---1-023575211232210000467665244
Q gi|254781053|r   86 YKKSIVESNTQGINFLLKKNKIITYHGSA----RIVSNN---K-ILVKGSSSEETIEAKNIVIATGSEASG  148 (466)
Q Consensus        86 ~~~~~v~~~~~~~~~~~~~~~V~~~~g~a----~~~~~~---~-v~V~~~~~~~~i~ad~iviATGs~p~~  148 (466)
                                  ....+++.|++++-|+.    +++...   . -.+.-.+|. .+++|-+|.|+|=||+.
T Consensus       195 ------------L~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~-~l~aDlvv~A~GirP~~  252 (813)
T TIGR02374       195 ------------LQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGS-SLEADLVVFAAGIRPRD  252 (813)
T ss_pred             ------------HHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCC-EEEECEEEEECCCCCCH
T ss_conf             ------------99999857957986176110576415640123122423897-88703799951566636


No 313
>PRK07538 hypothetical protein; Provisional
Probab=97.24  E-value=5e-05  Score=55.12  Aligned_cols=49  Identities=14%  Similarity=0.229  Sum_probs=38.6

Q ss_pred             CCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22322002344201468721699972-13321100000232045312103
Q gi|254781053|r  230 MNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       230 V~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..++++.++++++.+++++.+++.+. +++..++++|.|+-|-|....+.
T Consensus       119 ~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGADGi~S~VR  168 (413)
T PRK07538        119 DAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGADGIHSAVR  168 (413)
T ss_pred             CEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEECCCCCCHHH
T ss_conf             68996778989887499529999715788723998488998889875245


No 314
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.23  E-value=5.5e-05  Score=54.78  Aligned_cols=57  Identities=14%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222222222232200234420146-872169997213321100000232045312103
Q gi|254781053|r  221 CLKIMSKQGMNFQLNSKVSSVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       221 ~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.....|..++++.+..+++..+ +...|++. .+|+..++.||.|+=|-|....+.
T Consensus       109 L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~-~dG~~~~l~a~yvVGcDG~~S~vR  166 (392)
T PRK08243        109 LMAAREAAGGPIVFEASDVALHDFDGDRPYVTYT-KDGETHRIDCDFIAGCDGFHGVSR  166 (392)
T ss_pred             HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEE-CCCCEEEEEEEEEEECCCCCCCCC
T ss_conf             9999997699799905999999569982599994-499379999846751688987520


No 315
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=97.22  E-value=4.3e-05  Score=55.54  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC
Q ss_conf             13332101234454332013220122011100001
Q gi|254781053|r  173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG  207 (466)
Q Consensus       173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~  207 (466)
                      .|++++|||+|..|+-+|..|++.|.+|||+++.+
T Consensus       255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~  289 (660)
T PRK01747        255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADE  289 (660)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             88718998938999999999997899689994798


No 316
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.21  E-value=3.4e-05  Score=56.28  Aligned_cols=137  Identities=25%  Similarity=0.313  Sum_probs=68.9

Q ss_pred             CC-CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCC-----C----EEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             93-31999989866899999999879---939999379971-----5----02513667370989999999999998667
Q gi|254781053|r    1 MV-YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTY-----G----GTCLNIGCIPSKALLHASEMYSHIAKEAG   67 (466)
Q Consensus         1 M~-YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~-----G----GtC~~~GCiPsK~l~~~a~~~~~~~~~~~   67 (466)
                      |+ |||+||||||+|+++|+.|+++|   .+|++||+..+.     +    +.+++.   .|+-++....++..+.....
T Consensus         1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~---~s~~~L~~lGl~~~l~~~~~   77 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAA---GTCQQLARLGVWQALADCAT   77 (395)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHHCC
T ss_conf             971898999938999999999996188997499993788544568887744788889---99999998799288786276


Q ss_pred             HC-CEEC------CCCCCCHH--------HHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEEEE--EE-CCCCCCCCCCCC
Q ss_conf             55-8164------77532899--------999999999998777778764-004310110011--10-022210235752
Q gi|254781053|r   68 DL-GINI------ASCHLDLK--------KMMSYKKSIVESNTQGINFLL-KKNKIITYHGSA--RI-VSNNKILVKGSS  128 (466)
Q Consensus        68 ~~-g~~~------~~~~~d~~--------~~~~~~~~~v~~~~~~~~~~~-~~~~V~~~~g~a--~~-~~~~~v~V~~~~  128 (466)
                      .+ .+..      ....++..        .+++. ..+    ...+...+ +..+|++..+..  .+ .++..+.+..++
T Consensus        78 pi~~i~v~d~~~~~~~~~~~~~~~~~~lg~~v~~-~~l----~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~  152 (395)
T PRK05732         78 PIRHIHVSDRGHAGFVRLDAEDYGVDALGYVVEL-ADV----GQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDD  152 (395)
T ss_pred             CCEEEEEEECCCCCCEECCHHHCCCCCCCCEEEH-HHH----HHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECC
T ss_conf             5428998406867721056332387656543236-999----99999988408996997698899999828927999879


Q ss_pred             CCCCCCCEEECCCCCCCC
Q ss_conf             112322100004676652
Q gi|254781053|r  129 SEETIEAKNIVIATGSEA  146 (466)
Q Consensus       129 ~~~~i~ad~iviATGs~p  146 (466)
                      + +++++|.+|-|-|.+.
T Consensus       153 g-~~i~a~lvVgADG~~S  169 (395)
T PRK05732        153 G-ETLTARLLVAADGTHS  169 (395)
T ss_pred             C-CEEEECEEEEECCCCH
T ss_conf             9-8998379999289962


No 317
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689   Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=97.21  E-value=0.0004  Score=48.56  Aligned_cols=33  Identities=33%  Similarity=0.531  Sum_probs=29.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC
Q ss_conf             3199998986689999999987----99399993799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~   35 (466)
                      |||||+|||++|++-|+-|...    .+||+|+|..+
T Consensus         1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d   37 (481)
T TIGR01989         1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVD   37 (481)
T ss_pred             CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             9289888857899999997318732023067865234


No 318
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=97.19  E-value=4.1e-05  Score=55.70  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=32.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             199998986689999999987993999937997150
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ||+|||||.+|+++|.+|+++|.+|+|||++...+|
T Consensus         1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~g   36 (309)
T pfam01266         1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG   36 (309)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             999999279999999999978995999949998875


No 319
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101   Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.19  E-value=0.00042  Score=48.40  Aligned_cols=37  Identities=35%  Similarity=0.533  Sum_probs=33.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             3199998986689999999987993999937997150
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ||+||||+|.+|+-+|.+|+..|+||+++|+==-.||
T Consensus         1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGG   37 (506)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGG   37 (506)
T ss_pred             CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf             9478981683178999999854622553220114788


No 320
>KOG2495 consensus
Probab=97.19  E-value=0.0013  Score=44.75  Aligned_cols=105  Identities=18%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC--CCC---------CCCCCCCCCCCCCCC--CCCCCCCHHHHHH
Q ss_conf             332101234454332013220122011100001112--212---------222112222222222--2223220023442
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL--NGM---------DKEIAAHCLKIMSKQ--GMNFQLNSKVSSV  241 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~l~~~--gV~i~~~~~v~~i  241 (466)
                      |+++|+|+|-.|+-+..-+...-.+|+++..++.++  |..         -+.+.+.+....++.  +++++ .++...+
T Consensus        56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~~i  134 (491)
T KOG2495          56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECTKI  134 (491)
T ss_pred             CEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEE-ECCCEEE
T ss_conf             539998575288999875266434249964630068731467764462431034556898862257871698-6260760


Q ss_pred             HCCCCCCEEEEEEECC--CCCCCEEEEEEECCCCEEEECCC
Q ss_conf             0146872169997213--32110000023204531210367
Q gi|254781053|r  242 KKVKGKAQVVYRSTDD--EPINIEADAVLVAAGRRPYTKGL  280 (466)
Q Consensus       242 ~~~~~~~~v~~~~~~g--~~~~i~~D~vl~a~G~~Pn~~~l  280 (466)
                      +.....+.+.-...++  .+..+.+|.+++|+|-.|||-+.
T Consensus       135 Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi  175 (491)
T KOG2495         135 DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI  175 (491)
T ss_pred             CCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCC
T ss_conf             66666798764126888612660266899962677777899


No 321
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.17  E-value=0.0023  Score=43.05  Aligned_cols=47  Identities=17%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCC-CCCCE-EECC-CCEEECC
Q ss_conf             11000002320453121036784000012676422333-77633-3026-8487024
Q gi|254781053|r  260 INIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEI-GGQFQ-TSIS-TIYAIGD  313 (466)
Q Consensus       260 ~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~v-d~~~~-Ts~p-~IyA~GD  313 (466)
                      .++++.-+++|+|.+|.+.      .++++|.+. |.+ |+-+. ...| .+-.+|-
T Consensus       279 ~~~~aKnIIIATGS~P~~p------pgi~iD~k~-V~TSd~AL~Le~lPk~m~IIGg  328 (673)
T PTZ00153        279 KEFKVKNIIIATGSTPNIP------DNIEIDDKS-VFTSDEAVKLEGLKNYMGIIGM  328 (673)
T ss_pred             CEEECCEEEECCCCCCCCC------CCCCCCCCE-EECHHHHCCHHHCCCEEEEECC
T ss_conf             5550230799018877889------987868766-8630331270007865899877


No 322
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774    This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=97.17  E-value=0.00038  Score=48.68  Aligned_cols=99  Identities=21%  Similarity=0.298  Sum_probs=55.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC----CCCCEEEEEECCCCHHHHH---HHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             999989866899999999879939999379----9715025136673709899---999999999986675581647753
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE----KTYGGTCLNIGCIPSKALL---HASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~----~~~GGtC~~~GCiPsK~l~---~~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      |.||||||||-+||-.|++.|.+..|+|+.    ++=||.      ||=..+-   -+.++++...+.  -.-++..+..
T Consensus         3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGA------IPLCMv~EF~lP~d~iDRRV~k--Mk~~SPSN~~   74 (401)
T TIGR02028         3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGA------IPLCMVDEFDLPRDIIDRRVTK--MKMISPSNIA   74 (401)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC------CCCCCCCHHCCCHHHHHCCCCE--EEEECCCCHH
T ss_conf             8897489741689999985031046332056788778886------4412010103786675121102--2421641013


Q ss_pred             CCHHHHHHH-------HHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             289999999-------9999998777778764004310110011
Q gi|254781053|r   78 LDLKKMMSY-------KKSIVESNTQGINFLLKKNKIITYHGSA  114 (466)
Q Consensus        78 ~d~~~~~~~-------~~~~v~~~~~~~~~~~~~~~V~~~~g~a  114 (466)
                      +|+...+..       +.++.   ...++...++.|-++++|.-
T Consensus        75 ~d~gr~L~~~~yIgM~RREVL---DsflR~RA~~~GA~li~Glv  115 (401)
T TIGR02028        75 VDIGRTLKEHEYIGMVRREVL---DSFLRERAADAGATLINGLV  115 (401)
T ss_pred             HHHHCCCCCCCCCCCHHHHHH---HHHHHHHHHHCCCEEECCEE
T ss_conf             320002788761251457888---89999999864881414445


No 323
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.15  E-value=5.3e-05  Score=54.94  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+++.+...+++.+++.++..++.+.+++  .+|  .++.+|.|+-|-|....+.
T Consensus       113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg--~~i~a~llIgADG~~S~vR  168 (386)
T PRK07494        113 RALEARAAELPNIDRFDDEAESVRPRGDEVTVTL--ADG--TTLSARLVVAADGRNSPAR  168 (386)
T ss_pred             HHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEE--CCC--CEEEEEEEEEECCCCCCCC
T ss_conf             9999999718997997770689996698489997--899--6999869999058887431


No 324
>PRK08774 consensus
Probab=97.15  E-value=9.5e-05  Score=53.08  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             CCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22232200234420146872-169997213321100000232045312103
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+..+.+.++..++...++. .+.+...++ +..+.++.++-|-|....+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-~~~i~a~llVgADG~~S~vR  173 (402)
T PRK08774        124 HLRRYRPARCIGVEPVQDGLRAVRLATADG-EQLVRARLVVGADGSHSAVR  173 (402)
T ss_pred             CCEEEECEEEEEEEEECCCCCEEEEEECCC-CEEEEECEEEECCCCCCCCH
T ss_conf             948982228999999536861699993799-57983059999589984523


No 325
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.14  E-value=0.00068  Score=46.85  Aligned_cols=34  Identities=26%  Similarity=0.594  Sum_probs=30.2

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf             933199998986689999999987--993999937997
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKT   36 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~   36 (466)
                      ||  |+|||||||||..|+-++++  +++|+++|++++
T Consensus         1 Mk--I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~   36 (770)
T PRK08255          1 MR--IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRP   36 (770)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             94--9997787589999999986589997479842799


No 326
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295   This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.11  E-value=0.00062  Score=47.14  Aligned_cols=32  Identities=41%  Similarity=0.673  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCC
Q ss_conf             1999989866899999999879-----9399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLK-----NKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G-----~~V~lIE~~~   35 (466)
                      ||+|||||..|++.|+.|.+.+     .||.|||+..
T Consensus         1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~   37 (425)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANS   37 (425)
T ss_pred             CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf             9788856589999999985067755761589865657


No 327
>PRK06996 hypothetical protein; Provisional
Probab=97.08  E-value=9.6e-05  Score=53.04  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=66.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCCCCC------EEEEEECCCCHHHHHHHHHHHHHHHH--------
Q ss_conf             3199998986689999999987----99399993799715------02513667370989999999999998--------
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEKTYG------GTCLNIGCIPSKALLHASEMYSHIAK--------   64 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~~~G------GtC~~~GCiPsK~l~~~a~~~~~~~~--------   64 (466)
                      |||+||||||.|++.|+.|++.    |.+|+++|+.+.-.      -..++.   .|..++..-..+.....        
T Consensus        12 ~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~Ra~al~~---~s~~~L~~lG~w~~~~~~i~~~~v~   88 (397)
T PRK06996         12 YDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDPRAIALSH---GSRVLLETLGAWPADATPIEHIHVS   88 (397)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEECH---HHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf             8889999279999999999601687896699976898666789993999757---8999999879984568742599994


Q ss_pred             HHHHCCE-ECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--E-CCCC--CCCCCCCCCCCCCCC
Q ss_conf             6675581-64775328999---999999999987777787640043101100111--0-0222--102357521123221
Q gi|254781053|r   65 EAGDLGI-NIASCHLDLKK---MMSYKKSIVESNTQGINFLLKKNKIITYHGSAR--I-VSNN--KILVKGSSSEETIEA  135 (466)
Q Consensus        65 ~~~~~g~-~~~~~~~d~~~---~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~--~-~~~~--~v~V~~~~~~~~i~a  135 (466)
                      +...+|. .......+.+.   +++. .    .+.......++..+++++.+...  + .+..  ++...+.++.+++++
T Consensus        89 ~~~~~g~~~~~~~~~~~~~lg~iv~~-~----~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a  163 (397)
T PRK06996         89 QRGHFGRTLIDRDDHDVPALGYVVRY-G----SLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQGARTLRA  163 (397)
T ss_pred             ECCCCCCEECCHHHCCCCCCCCCCCH-H----HHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEEEE
T ss_conf             05776621126544288522354437-9----999999999974898798344514577636745899605998659981


Q ss_pred             EEECCCCCCCC
Q ss_conf             00004676652
Q gi|254781053|r  136 KNIVIATGSEA  146 (466)
Q Consensus       136 d~iviATGs~p  146 (466)
                      +.+|-|=|++.
T Consensus       164 ~llVgaDG~~S  174 (397)
T PRK06996        164 RIAVQAEGGLF  174 (397)
T ss_pred             CEEEECCCCCH
T ss_conf             89999599981


No 328
>PRK08948 consensus
Probab=97.04  E-value=7.8e-05  Score=53.70  Aligned_cols=136  Identities=21%  Similarity=0.267  Sum_probs=67.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCC---------EEEEEECCCCHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             31999989866899999999879---9399993799715---------0251366737098999999999999866755-
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK---NKVAIIEKEKTYG---------GTCLNIGCIPSKALLHASEMYSHIAKEAGDL-   69 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G---~~V~lIE~~~~~G---------GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~~-   69 (466)
                      |||+||||||+|++.|+.+++++   .+|++||+..+--         ..+++.   .|+.++....++..+......+ 
T Consensus         1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~---~s~~~L~~lGvw~~l~~~~~pi~   77 (392)
T PRK08948          1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAA---GTCQQLARIGVWSALADCATAIT   77 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCCHHHHHHCCCCC
T ss_conf             949999958999999999986167998499982788754457888843457569---99999998799477785066300


Q ss_pred             CEEC------CCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EEC-CCCCCCCCCCCCCCC
Q ss_conf             8164------7753289--------9999999999998777778764004310110011--100-222102357521123
Q gi|254781053|r   70 GINI------ASCHLDL--------KKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RIV-SNNKILVKGSSSEET  132 (466)
Q Consensus        70 g~~~------~~~~~d~--------~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~~-~~~~v~V~~~~~~~~  132 (466)
                      .+..      ....++.        ..+++. ..+.+.+.+   ...+..+|+++.+..  .+. +...+.+..+++ ++
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~~~lg~iv~~-~~l~~~L~~---~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g-~~  152 (392)
T PRK08948         78 HVHVSDRGHAGFVTLAAEDYGVAALGYVVEL-HDVGQRLFA---LLRKAPGVTLHCPARVANVARTQESVTVTLDNG-ET  152 (392)
T ss_pred             EEEEEECCCCCEEECCHHHCCCCCCHHHHHH-HHHHHHHHH---HHHHCCCCEEECCCEEEEEEECCCCEEEEECCC-CE
T ss_conf             7898407877625437666088531127879-999999999---997589987855876899885588279997899-89


Q ss_pred             CCCEEECCCCCCCC
Q ss_conf             22100004676652
Q gi|254781053|r  133 IEAKNIVIATGSEA  146 (466)
Q Consensus       133 i~ad~iviATGs~p  146 (466)
                      ++++.+|-|-|++.
T Consensus       153 ~~a~llVgaDG~~S  166 (392)
T PRK08948        153 LQGKLLVAADGSHS  166 (392)
T ss_pred             EEECEEEEECCCCH
T ss_conf             98378999189973


No 329
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.97  E-value=0.0008  Score=46.32  Aligned_cols=62  Identities=23%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC--CCCEEE--EEEECCCCCCC---EEEEEEECCCCEEE
Q ss_conf             2211222222222222232200234420146--872169--99721332110---00002320453121
Q gi|254781053|r  215 KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVK--GKAQVV--YRSTDDEPINI---EADAVLVAAGRRPY  276 (466)
Q Consensus       215 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~--~~~~~g~~~~i---~~D~vl~a~G~~Pn  276 (466)
                      +.+...+.+.|+++||+++++++|+.++-..  +...++  ....+|+..++   +-|.|++..|..-.
T Consensus       226 eSii~Pl~~~L~~~GV~F~~~t~Vtdi~~~~~~~~~~vt~i~~~~~g~~~~i~l~~~DlVfvTnGS~t~  294 (577)
T PRK13977        226 ESLVLPLIKYLEEHGVDFEYGTKVTDIDFDITGGKKTATAIHLTDDGKEESIDLTEDDLVFVTNGSMTE  294 (577)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCEEEEECCCCCC
T ss_conf             479999999999879879779989998985389976899999981896677761888889997886544


No 330
>PRK08013 hypothetical protein; Provisional
Probab=96.91  E-value=0.00012  Score=52.24  Aligned_cols=47  Identities=15%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222232200234420146872169997213321100000232045312103
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+|+++.+++++++...++...+++.  ++  .++.++.|+-|-|....+.
T Consensus       125 ~~v~~~~~~~v~~i~~~~~~~~v~l~--~g--~~i~a~lvVgADG~~S~vR  171 (400)
T PRK08013        125 SDITLLAPAELQQVAWGENEAFLTLK--DG--SMLTARLVIGADGANSWLR  171 (400)
T ss_pred             CCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH
T ss_conf             98299868668998716971599947--99--8997428999788761323


No 331
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=96.90  E-value=0.0013  Score=44.81  Aligned_cols=32  Identities=34%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      .|.|||||-||-.||+++|+.|.+|.|.|-.+
T Consensus         2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP   33 (444)
T TIGR00137         2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRP   33 (444)
T ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             36897188534689999984897279975387


No 332
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.90  E-value=0.00091  Score=45.91  Aligned_cols=36  Identities=28%  Similarity=0.568  Sum_probs=33.3

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             1999989866899999999879939999379971502
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      +|.|||+|.+|++||..|+++ ++|+|+|.+..+||-
T Consensus        10 ~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh   45 (447)
T COG2907          10 KIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH   45 (447)
T ss_pred             CEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCC
T ss_conf             168972562014457753235-524788606624675


No 333
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=96.89  E-value=0.0032  Score=41.98  Aligned_cols=32  Identities=41%  Similarity=0.616  Sum_probs=30.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             99998986689999999987993999937997
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT   36 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~   36 (466)
                      |+|||||+.|+..|..++++|.+|+|||+.+.
T Consensus         2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~   33 (82)
T pfam00070         2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDR   33 (82)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             99999889999999999863927899812573


No 334
>KOG1298 consensus
Probab=96.88  E-value=0.0014  Score=44.59  Aligned_cols=33  Identities=39%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             319999898668999999998799399993799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      +||+|||+|-+|-+.|..|++.|.||.+||++-
T Consensus        46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl   78 (509)
T KOG1298          46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERDL   78 (509)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             447998886227899999850785799996345


No 335
>PRK07608 hypothetical protein; Provisional
Probab=96.84  E-value=0.00014  Score=51.94  Aligned_cols=55  Identities=18%  Similarity=0.209  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+.+.+++.+.-..++.++++++..++++.+++.  ++  +++.+|.|+-|-|....+.
T Consensus       117 ~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~--~g--~~i~a~llVgADG~~S~vR  171 (389)
T PRK07608        117 ALDAALRFQGNLTWFDARAQGLDVTPDAATLTLS--DG--QVLEADLVVGADGAHSWVR  171 (389)
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEC--CC--CEEEEEEEEEECCCCHHHH
T ss_conf             9999986189869988788899972991799988--99--8999658999669976888


No 336
>KOG2614 consensus
Probab=96.83  E-value=0.0022  Score=43.13  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCEEEEEE
Q ss_conf             933199998986689999999987993999937997--15025136
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT--YGGTCLNI   44 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~--~GGtC~~~   44 (466)
                      |+=+|+|+|||.+|+++|+-+.+.|.+|.+.|+.+.  .+|+-+|-
T Consensus         1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L   46 (420)
T KOG2614           1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINL   46 (420)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEE
T ss_conf             9974899888389899999998758748998621465558841121


No 337
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.81  E-value=0.00028  Score=49.62  Aligned_cols=19  Identities=26%  Similarity=0.326  Sum_probs=14.0

Q ss_pred             CCCCCCCCCEEECCCCCCC
Q ss_conf             5211232210000467665
Q gi|254781053|r  127 SSSEETIEAKNIVIATGSE  145 (466)
Q Consensus       127 ~~~~~~i~ad~iviATGs~  145 (466)
                      ++...++.++.+|+|||.-
T Consensus       601 eG~~~tI~AkaVVLATGGF  619 (1167)
T PTZ00306        601 SGQVMDLLADAVILATGGF  619 (1167)
T ss_pred             CCCEEEEECCEEEEECCCC
T ss_conf             8854998347799968887


No 338
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.74  E-value=0.00019  Score=50.85  Aligned_cols=53  Identities=13%  Similarity=0.254  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  220 HCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       220 ~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+.+.+.+.  .++++.+++.++..++++.+++.+  |+  +..+|.|+-|-|....+.
T Consensus       110 ~L~~~~~~~--~~~~~~~v~~v~~~~~~v~v~f~d--G~--~~~aDlVVGADGi~S~vR  162 (414)
T TIGR03219       110 ALLKHLPEG--IASFGKRATQIEEQAEEVQVLFTD--GT--EYRCDLLIGADGIKSALR  162 (414)
T ss_pred             HHHHHCCCC--EEEECCEEEEEEEECCEEEEEECC--CC--EEECCEEEECCCCCHHHH
T ss_conf             998547666--779698999999958927999879--98--872268997476423678


No 339
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.72  E-value=0.00036  Score=48.85  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=61.3

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCC---CCCCC---------CCCCCCCCC-CCCCCCCCHHHHH
Q ss_conf             3332101234454332013220122011100001112212---22211---------222222222-2222322002344
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGM---DKEIA---------AHCLKIMSK-QGMNFQLNSKVSS  240 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~---d~~~~---------~~~~~~l~~-~gV~i~~~~~v~~  240 (466)
                      -++++|||||..|++.|--++.+|.+|+|+++.+.+.+++   +.-+.         ...+....+ .+|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCHHHCCCHHHHHCCCCCEEEEEEEEEEE
T ss_conf             05359986848989999999975980899941786450477652307875532321330233312588614654224653


Q ss_pred             HHCCCCCCEEEEEEEC
Q ss_conf             2014687216999721
Q gi|254781053|r  241 VKKVKGKAQVVYRSTD  256 (466)
Q Consensus       241 i~~~~~~~~v~~~~~~  256 (466)
                      ++..-+..+|.++...
T Consensus       204 v~G~vGnF~vki~kkp  219 (622)
T COG1148         204 VSGSVGNFTVKIEKKP  219 (622)
T ss_pred             ECCCCCCEEEEEECCC
T ss_conf             0354353478873065


No 340
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69  E-value=0.00034  Score=49.03  Aligned_cols=97  Identities=24%  Similarity=0.315  Sum_probs=58.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC------------CCCC-----CCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             332101234454332013220122011100001112------------2122-----22112222222222222322002
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL------------NGMD-----KEIAAHCLKIMSKQGMNFQLNSK  237 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll------------~~~d-----~~~~~~~~~~l~~~gV~i~~~~~  237 (466)
                      -.++|||+|+.|+=.|-+++|.+.+++|+.-.+.+-            |+++     +++.+...+..+.-++++.. ..
T Consensus         4 ~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE-EE
T ss_conf             28899895889999999998758985699947875886344333357679867775089999999777634708888-99


Q ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             3442014687216999721332110000023204531210
Q gi|254781053|r  238 VSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       238 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +.+++..++  ...++..++   +++++.|++|+|..+.-
T Consensus        83 v~~v~~~~~--~F~v~t~~~---~~~ak~vIiAtG~~~~~  117 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKG---TYEAKAVIIATGAGARK  117 (305)
T ss_pred             EEEEEECCC--EEEEEECCC---EEEEEEEEECCCCCCCC
T ss_conf             899860686--099994797---49865699961776567


No 341
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=96.68  E-value=0.0026  Score=42.57  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEE-EECCCCC-CC
Q ss_conf             211222222222222232200234420146872169997213321100000232045312103678400-0012676-42
Q gi|254781053|r  216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEE-IGINIDH-RG  293 (466)
Q Consensus       216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~-~gi~~~~-~G  293 (466)
                      .+++.+.+...++||+... ..|+++...+++....+...+|  .++++|..|=|+|++.-.    +++ .+.+..+ +.
T Consensus       158 k~~~~Lr~~a~~~GV~~i~-~~V~~v~~~~~G~I~sl~l~~G--~~i~aDlfIDCTGF~~lL----i~~~l~~~~~s~s~  230 (457)
T pfam04820       158 LYARFLRRNAEARGVTRVE-GKVVDVQLDADGFVTSLRLEDG--REVEADLFIDCSGFRGLL----IEQALKTGYEDWSD  230 (457)
T ss_pred             HHHHHHHHHHHHCCCEEEE-EEEEEEEECCCCCEEEEEECCC--CEEEEEEEEECCCCCCCC----CCCCCCCCCCCHHH
T ss_conf             9999999988857988998-4787999889996789996789--888764899778741100----00135998515756


Q ss_pred             CCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCE
Q ss_conf             23337763330268487024333543443000123201
Q gi|254781053|r  294 CIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAV  331 (466)
Q Consensus       294 ~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~a  331 (466)
                      .+.+|.-+-...|.-    |-. .|-...+|+..|..=
T Consensus       231 ~L~~d~Ava~~~~~~----~~~-~pyT~atA~~~GW~W  263 (457)
T pfam04820       231 WLPCDRALAVQCESV----GPP-EPYTRATAHDAGWRW  263 (457)
T ss_pred             CCCCCCEEEEECCCC----CCC-CCCEEEEECCCCEEE
T ss_conf             065673256635767----899-750355640487368


No 342
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.67  E-value=0.00035  Score=48.97  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCCC
Q ss_conf             3321012344543320132201220-1110000111
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGTI  209 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~l  209 (466)
                      .+++|||+|.-|+=.|..|.+.|.. +.++|+++++
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             548998987889999999997599867999705766


No 343
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733   4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria.   This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=96.66  E-value=0.0032  Score=41.95  Aligned_cols=160  Identities=21%  Similarity=0.346  Sum_probs=78.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CC----EEEEEECCCCHHHHHHHHHHHHHHHH-HHHHCCEE
Q ss_conf             933199998986689999999987993999937997---15----02513667370989999999999998-66755816
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKT---YG----GTCLNIGCIPSKALLHASEMYSHIAK-EAGDLGIN   72 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~---~G----GtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~~g~~   72 (466)
                      ||=-|+|||||||||-..-=|.+.|-..+|+|+...   +|    |. +-.|.+   .|+.-+..-.++.+ -...-|++
T Consensus         1 MkTqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~dYVlgRIRAGv-LE~g~v---~LL~~agv~~Rm~~eG~~H~G~~   76 (393)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRDYVLGRIRAGV-LEQGTV---DLLREAGVDERMDREGLVHEGIE   76 (393)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCH-HHHHHH---HHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             95179997577357899999986698589972357223433210123-578999---99987223223453587325654


Q ss_pred             C----CCCCCCHHHHHH------H-HHHHHHHHHH-----HHHHHHHCCCEEEEEEEEEECCCC---CCCCCCCCCCCCC
Q ss_conf             4----775328999999------9-9999998777-----778764004310110011100222---1023575211232
Q gi|254781053|r   73 I----ASCHLDLKKMMS------Y-KKSIVESNTQ-----GINFLLKKNKIITYHGSARIVSNN---KILVKGSSSEETI  133 (466)
Q Consensus        73 ~----~~~~~d~~~~~~------~-~~~~v~~~~~-----~~~~~~~~~~V~~~~g~a~~~~~~---~v~V~~~~~~~~i  133 (466)
                      +    ...++|+.+.-.      + ..++.+.+-+     +....++...|++-+-.   .+..   +|+...++...++
T Consensus        77 ia~~g~~~riDl~~~tGG~~V~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V~~HD~~---~~~P~gc~VT~~~dG~~~~~  153 (393)
T TIGR02360        77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLYEAREQAGLKTVYDADDVRLHDLA---GDRPEGCHVTFERDGEEHRI  153 (393)
T ss_pred             EECCCCEEECCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCCEEEEEECCCEEEE
T ss_conf             501782420007660589789997661577889999986389556411432112656---78889525877787917776


Q ss_pred             CCEEECCCCC----CCCCCCCCCC-CCCCCEEEEEECCCC
Q ss_conf             2100004676----6524445766-532100245305741
Q gi|254781053|r  134 EAKNIVIATG----SEASGLPGMS-IDFDEQVIVSSTGAL  168 (466)
Q Consensus       134 ~ad~iviATG----s~p~~iP~~~-~~~~~~~~~t~~~~~  168 (466)
                      ..|+|.=|=|    ||. .||... ..++..+-+-+=+++
T Consensus       154 dCDfIAGCDGFHGvSR~-siP~~~~k~fErVYPFGWLGiL  192 (393)
T TIGR02360       154 DCDFIAGCDGFHGVSRA-SIPAEVLKEFERVYPFGWLGIL  192 (393)
T ss_pred             EEEEEECCCCCCCCCCC-CCCHHHHHCCCCCCCCCCHHHH
T ss_conf             40267527888686544-5651241112450676200120


No 344
>KOG2853 consensus
Probab=96.65  E-value=0.0023  Score=42.97  Aligned_cols=62  Identities=26%  Similarity=0.527  Sum_probs=41.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCC---------CCEEEEEECCCCHH--HHHHHHHHHHHHHHH
Q ss_conf             319999898668999999998----7993999937997---------15025136673709--899999999999986
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEKT---------YGGTCLNIGCIPSK--ALLHASEMYSHIAKE   65 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~~---------~GGtC~~~GCiPsK--~l~~~a~~~~~~~~~   65 (466)
                      -||+|||||-.|.+.|.+|++    .|.+|+++|++..         .||.|-.. .+|-.  .-+.+++..++..++
T Consensus        87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF-SlpEnIqmSLF~a~Flr~a~eh  163 (509)
T KOG2853          87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF-SLPENIQMSLFTAEFLRNAREH  163 (509)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEEC-CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6789988886522658999887643794399996267521001145554443321-4610011356799999877776


No 345
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.63  E-value=0.00024  Score=50.18  Aligned_cols=48  Identities=13%  Similarity=0.259  Sum_probs=35.9

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222232200234420146872169997213321100000232045312103
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..+|+++.+.+++.++..++...+++.  ++  .++.++.|+-|-|....+.
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~~~v~~~--~g--~~i~a~llVgaDG~~S~vR  171 (405)
T PRK08850        124 QDNVTLLMPARCQSIAVGESEAWLTLD--NG--QALTAKLVVGADGANSWVR  171 (405)
T ss_pred             CCCCEEECCCEEEEEEECCCCEEEEEC--CC--CEEEEEEEEEECCCCHHHH
T ss_conf             899199737535567617971599977--99--8887508999169873789


No 346
>KOG1276 consensus
Probab=96.61  E-value=0.0033  Score=41.83  Aligned_cols=37  Identities=41%  Similarity=0.592  Sum_probs=33.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCE--EEEECCCCCCE
Q ss_conf             31999989866899999999879939--99937997150
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKV--AIIEKEKTYGG   39 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V--~lIE~~~~~GG   39 (466)
                      -+|+|+|||.+|+++|.+|++++-++  +|+|+.+.+||
T Consensus        12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276          12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             669998885368899999985489955999842786665


No 347
>KOG2665 consensus
Probab=96.59  E-value=0.0017  Score=43.99  Aligned_cols=231  Identities=22%  Similarity=0.256  Sum_probs=109.9

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEE--EEEECCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC
Q ss_conf             33199998986689999999987--9939999379971502--5136673709899999999999986675581647753
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGT--CLNIGCIPSKALLHASEMYSHIAKEAGDLGINIASCH   77 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGt--C~~~GCiPsK~l~~~a~~~~~~~~~~~~~g~~~~~~~   77 (466)
                      +||+||||||..|++.|.++.-+  +++|+++|+++.++-.  --|.|.|                    .-|+-....+
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgVi--------------------HaGIYY~P~S  107 (453)
T KOG2665          48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVI--------------------HAGIYYKPGS  107 (453)
T ss_pred             CCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEE--------------------EEEEEECCCC
T ss_conf             55479988843222556777631787257754000102155125666505--------------------6434417766


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC---
Q ss_conf             28999999999999987777787640043101100111002221023575211232210000467665244457665---
Q gi|254781053|r   78 LDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSI---  154 (466)
Q Consensus        78 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a~~~~~~~v~V~~~~~~~~i~ad~iviATGs~p~~iP~~~~---  154 (466)
                      +. +++-      ++-..-.++.                .+...+-.        =+..++|+||++..  +|-++.   
T Consensus       108 LK-AklC------V~G~~LlY~y----------------c~e~~Ipy--------Kk~GKLIVAt~~~E--iprLd~L~~  154 (453)
T KOG2665         108 LK-AKLC------VEGRELLYEY----------------CDEKKIPY--------KKTGKLIVATESEE--IPRLDALMH  154 (453)
T ss_pred             CC-HHHH------HCCHHHHHHH----------------HHHCCCCH--------HHCCEEEEEECHHH--CCHHHHHHH
T ss_conf             00-0110------3429999998----------------52407973--------45063899717211--503899997


Q ss_pred             -----CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -----321002453057411111133321012344543320132201220111000011122122221122222222222
Q gi|254781053|r  155 -----DFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQG  229 (466)
Q Consensus       155 -----~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~g  229 (466)
                           ...+-..+...++++++..-+               +..+-+--+.-+++-+ .+        ...+.+.++..|
T Consensus       155 ~g~qN~v~glrmieg~ei~~~EP~cr---------------gvkAl~sPhtGIvD~~-~v--------~ls~~edF~~~g  210 (453)
T KOG2665         155 RGTQNGVPGLRMIEGSEIMEMEPYCR---------------GVKALLSPHTGIVDWG-SV--------TLSFGEDFDFMG  210 (453)
T ss_pred             HHHHCCCCCEEEECCCHHHHCCHHHH---------------HHHHHCCCCCCEEEHH-HH--------HHHHHHHHHHHC
T ss_conf             65225999706531211333173554---------------4465448876604357-89--------999988898745


Q ss_pred             CCCCCCHHHHHHHCCCC---CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCCCCCEE---
Q ss_conf             22322002344201468---721699972133211000002320453121036784000012676422333776333---
Q gi|254781053|r  230 MNFQLNSKVSSVKKVKG---KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQFQT---  303 (466)
Q Consensus       230 V~i~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~~G~I~vd~~~~T---  303 (466)
                      =++++|-+++.+.....   +.-+++.++.  .+++.+..++-++|....  .+ .+..|+++|++=..--.+|++-   
T Consensus       211 g~i~~n~~l~g~~~n~~~~~~Ypivv~ngk--~ee~r~~~~vtc~gl~sd--r~-aa~sgc~~dPriVpfrG~ylll~~e  285 (453)
T KOG2665         211 GRIYTNFRLQGIAQNKEATFSYPIVVLNGK--GEEKRTKNVVTCAGLQSD--RC-AALSGCELDPRIVPFRGEYLLLKPE  285 (453)
T ss_pred             CCCCCCCEECCCHHCCCCCCCCCEEEECCC--CCEEEEEEEEEECCCCHH--HH-HHHHCCCCCCEEEECCCHHHHCCHH
T ss_conf             412156410120103678888866994585--522577678873363376--78-8974899887041045315531767


Q ss_pred             ----ECCCCEEECCC
Q ss_conf             ----02684870243
Q gi|254781053|r  304 ----SISTIYAIGDV  314 (466)
Q Consensus       304 ----s~p~IyA~GDv  314 (466)
                          -.-|||-+=|-
T Consensus       286 k~h~vk~niyPvpd~  300 (453)
T KOG2665         286 KLHLVKGNIYPVPDP  300 (453)
T ss_pred             HHCCCCCCEEECCCC
T ss_conf             762426745447888


No 348
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982    Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=96.55  E-value=0.00039  Score=48.64  Aligned_cols=126  Identities=25%  Similarity=0.362  Sum_probs=80.8

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC------CCCC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             3210123445433201322012201110000------1112--------2122-----2211222222222222232200
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHS------GTIL--------NGMD-----KEIAAHCLKIMSKQGMNFQLNS  236 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~------~~ll--------~~~d-----~~~~~~~~~~l~~~gV~i~~~~  236 (466)
                      +++|||+||-|+=-|-+-+|.+.+.-||++.      .+|.        |+|.     +++.+.+.++..+-|.++.++.
T Consensus         2 DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~   81 (321)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGE   81 (321)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             28998478678889999887467278983577774555333220651368688876628899999999987067366267


Q ss_pred             HHHHHHCCCC-----CCEEEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEEE-CCCCCCCCCC----CCC--CC-EE
Q ss_conf             2344201468-----7216999721332110000023204531210367840000-1267642233----377--63-33
Q gi|254781053|r  237 KVSSVKKVKG-----KAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIG-INIDHRGCIE----IGG--QF-QT  303 (466)
Q Consensus       237 ~v~~i~~~~~-----~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~g-i~~~~~G~I~----vd~--~~-~T  303 (466)
                      .|.+|+..+.     -..+.    .+  .+++++.||+|+|-.|.  .|++++ | =++-.|| |-    +|.  .+ + 
T Consensus        82 ~v~~v~~~~~~yE~~~F~~~----~~--~~y~a~avIiAtGa~~r--~lg~~k-GE~ef~GrG-VSyCA~CDGA~~ffk-  150 (321)
T TIGR01292        82 EVIRVDKSDRAYESDPFKVK----TG--KEYTAKAVIIATGAEAR--KLGIPK-GEDEFLGRG-VSYCATCDGASPFFK-  150 (321)
T ss_pred             EEEEEECCCCCCCCCEEEEE----EC--CEEEEEEEEEECCCHHH--HCCCCC-CHHHHCCCC-EEEEEHHCCCCHHHC-
T ss_conf             05686337884366103897----17--56886589991387154--237886-645532686-667223105401205-


Q ss_pred             ECCCCEEECC
Q ss_conf             0268487024
Q gi|254781053|r  304 SISTIYAIGD  313 (466)
Q Consensus       304 s~p~IyA~GD  313 (466)
                       ...|.++|.
T Consensus       151 -~K~V~VvGG  159 (321)
T TIGR01292       151 -NKEVAVVGG  159 (321)
T ss_pred             -CCEEEEECC
T ss_conf             -988999879


No 349
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.50  E-value=0.00039  Score=48.58  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=23.8

Q ss_pred             EECCCCEEECCCCCCC-CCC----CEECCCCCCEEECCCCC
Q ss_conf             3026848702433354-344----30001232012011122
Q gi|254781053|r  303 TSISTIYAIGDVVRGP-MLA----HKAEDEGIAVAEIISGQ  338 (466)
Q Consensus       303 Ts~p~IyA~GDv~g~~-~l~----~~A~~~g~~aa~~i~~~  338 (466)
                      +..+|+..+||++|.. +++    +.|+..|.+|++.+...
T Consensus       266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aae~i~~~  306 (396)
T COG0644         266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA  306 (396)
T ss_pred             EECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             05289899984666748865577399999999999999864


No 350
>PRK09897 hypothetical protein; Provisional
Probab=96.47  E-value=0.00065  Score=46.98  Aligned_cols=82  Identities=12%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             HHHHCCCCH-HHHHH--CCCCC-C-CCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEE
Q ss_conf             322012201-11000--01112-2-122221122222222222--22322002344201468721699972133211000
Q gi|254781053|r  192 VWTRLGSCV-KIIEH--SGTIL-N-GMDKEIAAHCLKIMSKQG--MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEA  264 (466)
Q Consensus       192 ~~~~lG~~V-tli~~--~~~ll-~-~~d~~~~~~~~~~l~~~g--V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~  264 (466)
                      .++++|.+- ++=+|  -||+| + .|-.++... .+.-++.|  |+++.+++|+.+....+++.+...+   +.....+
T Consensus        80 ~L~~~~id~~~l~~rqflPRiLlGeYl~~QF~~L-ve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~---~~~~~~F  155 (535)
T PRK09897         80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRL-VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ---DLPSETF  155 (535)
T ss_pred             HHHHCCCCHHHCCCCCEEHHHHHHHHHHHHHHHH-HHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECC---CCCCCCC
T ss_conf             8987199832264101004888889999999999-99998659669997576667644369955998337---8876432


Q ss_pred             EEEEECCCCE-EEE
Q ss_conf             0023204531-210
Q gi|254781053|r  265 DAVLVAAGRR-PYT  277 (466)
Q Consensus       265 D~vl~a~G~~-Pn~  277 (466)
                      |.+++|||-. |..
T Consensus       156 D~vVIaTGH~WP~~  169 (535)
T PRK09897        156 DLAVIATGHVWPDE  169 (535)
T ss_pred             EEEEEECCCCCCCC
T ss_conf             07998079879987


No 351
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.47  E-value=0.0002  Score=50.71  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=35.3

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222232200234420146872169997213321100000232045312103
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+|+++.+.++++++..++...+++.  ++  .++.+|.|+-|-|..-.+.
T Consensus       124 ~~i~~~~~~~v~~~~~~~~~~~v~l~--~g--~~i~a~llIgADG~~S~vR  170 (384)
T PRK08849        124 PNLTLLCPEKLKDLEFSAEGNRVTLE--SG--AEIEAKWVIGADGANSQVR  170 (384)
T ss_pred             CCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEEEECCCHHHH
T ss_conf             99199838778898853881499978--99--9998547999207864667


No 352
>KOG1238 consensus
Probab=96.44  E-value=0.0035  Score=41.64  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=31.1

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf             33199998986689999999987-993999937997
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQL-KNKVAIIEKEKT   36 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~-G~~V~lIE~~~~   36 (466)
                      .||.||||||.||-..|.+|++- ..+|+|+|+++.
T Consensus        57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~   92 (623)
T KOG1238          57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD   92 (623)
T ss_pred             CCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf             799899898731278887651388734999956899


No 353
>pfam00996 GDI GDP dissociation inhibitor.
Probab=96.42  E-value=0.006  Score=39.95  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=35.8

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             3319999898668999999998799399993799715025
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      .|||||+|-|..=--.|..|++.|+||+-+|+++.+||.+
T Consensus         4 eyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~~   43 (439)
T pfam00996         4 EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGES   43 (439)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             5029997998799999999973699899977998778630


No 354
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.40  E-value=0.00043  Score=48.30  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             222222222223220023442014687216999721332110000023204531210
Q gi|254781053|r  221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +.+..++.|+++++++.|+++...++.+ +-++ .+|+  ++.++.||.|-|....+
T Consensus       114 La~~Ae~aGA~i~~g~~V~~li~~~GrV-vGV~-~~G~--~i~A~vVI~AdGv~s~l  166 (428)
T PRK10157        114 LMEQAEEAGAQLITGIRVDNLVQRDGKV-VGVE-ADGD--VIEAKTVILADGVNSIL  166 (428)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEECCEE-EEEE-CCCC--EEEEEEEEEECCCHHHH
T ss_conf             9999998098898685810014348979-9997-5895--89871799944721777


No 355
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=96.28  E-value=0.0008  Score=46.33  Aligned_cols=39  Identities=13%  Similarity=0.162  Sum_probs=24.9

Q ss_pred             CCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC
Q ss_conf             776333-0268487024333543443000123201201112
Q gi|254781053|r  298 GGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       298 d~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~  337 (466)
                      ...||| .+||+|.+|.++|..-. -.|.-||.+|+-|...
T Consensus       346 ~~tLe~k~~~~Lf~AGQInGt~GY-eEAaaqGliAGiNaa~  385 (391)
T pfam01134       346 LPTLETKKIPGLFFAGQINGTEGY-EEAAAQGLLAGINAAR  385 (391)
T ss_pred             CCHHHHCCCCCEEECCCCCCCHHH-HHHHHHHHHHHHHHHH
T ss_conf             303540546987876622477079-9999999999999999


No 356
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=96.20  E-value=0.0073  Score=39.35  Aligned_cols=38  Identities=37%  Similarity=0.577  Sum_probs=34.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEE
Q ss_conf             199998986689999999987--99399993799715025
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC   41 (466)
                      |++|||||-||---|++|.++  ..+|.|||....+||+=
T Consensus         1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNH   40 (392)
T TIGR01789         1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNH   40 (392)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             9788727335789999875259872899984377668875


No 357
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102   Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.18  E-value=0.0073  Score=39.33  Aligned_cols=40  Identities=30%  Similarity=0.490  Sum_probs=36.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE
Q ss_conf             9999898668999999998799399993799715025136
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNI   44 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC~~~   44 (466)
                      |+|-|+|-||++||.++..+|+..+++|+.+.+||....|
T Consensus         2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW   41 (454)
T TIGR02731         2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAW   41 (454)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEE
T ss_conf             5772274556778878763589626863210035502332


No 358
>KOG3855 consensus
Probab=96.16  E-value=0.0063  Score=39.83  Aligned_cols=33  Identities=39%  Similarity=0.680  Sum_probs=28.2

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf             33199998986689999999987----9939999379
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQL----KNKVAIIEKE   34 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~   34 (466)
                      +|||||+||||.|.+-|..+...    .+||.|+|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855          36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             CCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECC
T ss_conf             0778998884477899998624985000014677424


No 359
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=96.14  E-value=0.0061  Score=39.92  Aligned_cols=52  Identities=29%  Similarity=0.272  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             12222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ...+...++..|.+|++|++|++|...++++.|...  +|  +++++|.||+|+..
T Consensus       207 ~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~~--~G--~~~~ad~VI~a~p~  258 (444)
T pfam01593       207 PQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTV--DG--EVIEADAVIVTVPL  258 (444)
T ss_pred             HHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEEC--CC--CEEECCEEEECCCH
T ss_conf             999999974159869958977899996996999988--99--76644868985798


No 360
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884   In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B.   In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein.   The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species .    The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=96.07  E-value=0.008  Score=39.06  Aligned_cols=31  Identities=48%  Similarity=0.657  Sum_probs=28.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCEEEEEC
Q ss_conf             31999989866899999999879--93999937
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEK   33 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~   33 (466)
                      -|++|||+|-|||-||+.+++.+  ++|+||.|
T Consensus         4 ~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSK   36 (585)
T TIGR01176         4 ADIAVIGAGGAGLRAAIAAAEANPHLDVALISK   36 (585)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             236788378446899999984089853789851


No 361
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103   Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=96.04  E-value=0.01  Score=38.33  Aligned_cols=36  Identities=39%  Similarity=0.579  Sum_probs=34.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf             999989866899999999879939999379971502
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGT   40 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGt   40 (466)
                      |.|||+|-||+++|..+...|++|-+.|....+||-
T Consensus         2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GGk   37 (474)
T TIGR02732         2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGGK   37 (474)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             578725677899999997389727885243323752


No 362
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803    During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.03  E-value=0.0064  Score=39.75  Aligned_cols=32  Identities=41%  Similarity=0.612  Sum_probs=27.8

Q ss_pred             CEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC
Q ss_conf             19999898668999999998----799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQ----LKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~----~G~~V~lIE~~~   35 (466)
                      ||+|||||.+|-=||.+|+.    .|+||+|+||..
T Consensus         1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~   36 (651)
T TIGR02061         1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAA   36 (651)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             947871785520278999987406883799961146


No 363
>KOG2960 consensus
Probab=95.94  E-value=0.0025  Score=42.69  Aligned_cols=41  Identities=41%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCCEEEEE
Q ss_conf             3199998986689999999987--9939999379971502513
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQL--KNKVAIIEKEKTYGGTCLN   43 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~--G~~V~lIE~~~~~GGtC~~   43 (466)
                      -||||+|+|.||++||...++.  .++|++||..-..||-...
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL  119 (328)
T KOG2960          77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL  119 (328)
T ss_pred             CCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC
T ss_conf             4569987786654146663036998469999700369974340


No 364
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.93  E-value=0.002  Score=43.38  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=22.1

Q ss_pred             CCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             22232200234420146872169997213321100000232045
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                      ..++.++++|+++...++..+++..++   .....+|.|++++-
T Consensus       117 dL~V~~~~rVt~v~~~~~~W~l~~~~g---~~~~~~d~vvla~P  157 (331)
T COG3380         117 DLTVVLETRVTEVARTDNDWTLHTDDG---TRHTQFDDVVLAIP  157 (331)
T ss_pred             CCHHHHHHHHHHHEECCCEEEEEECCC---CCCCCCCEEEEECC
T ss_conf             504344223143123387168984688---76455343899368


No 365
>KOG1335 consensus
Probab=95.78  E-value=0.019  Score=36.38  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=32.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             99998986689999999987993999937997150
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      ++|||+|.-|+.-+.--.++|.+|++||..+.+||
T Consensus       214 ~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~  248 (506)
T KOG1335         214 LTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG  248 (506)
T ss_pred             EEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCC
T ss_conf             79974745665546688763771799984434446


No 366
>PRK10015 hypothetical protein; Provisional
Probab=95.73  E-value=0.0012  Score=45.07  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             222222222223220023442014687216999721332110000023204531210
Q gi|254781053|r  221 CLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       221 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +.+..++.|+++++++.|+++..+++. .+-++.++   ..+.++.||.|-|....+
T Consensus       114 La~~Ae~aGa~i~~g~~v~~l~~e~g~-V~GV~tg~---~~l~A~vVI~AdGvns~l  166 (429)
T PRK10015        114 LMEQAEQAGAQFIPGVRVDALVREGNK-VTGVQAGD---DILEANVVILADGVNSML  166 (429)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEECCE-EEEEECCC---CEEEEEEEEEECCCCHHH
T ss_conf             999999759999779589999962998-99998798---268865899815622799


No 367
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.71  E-value=0.0016  Score=44.15  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             93319999898668999999998799399993799715
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG   38 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G   38 (466)
                      |+ ||+|||||..|+++|.+|+++|.+|+|||+++..|
T Consensus         1 m~-~V~VIGaGivGlstA~~La~~G~~VtviDr~~~~~   37 (410)
T PRK12409          1 MS-HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA   37 (410)
T ss_pred             CC-CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99-59998983999999999997899189996989987


No 368
>PRK07208 hypothetical protein; Provisional
Probab=95.68  E-value=0.0018  Score=43.82  Aligned_cols=57  Identities=18%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEE-EEEEECCCCCCCEEEEEEECCCC
Q ss_conf             1122222222222223220023442014687216-99972133211000002320453
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQV-VYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v-~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +-+.+.+.+.+.|+++++|++|++|...++.... .....++...++.+|.|+.++-.
T Consensus       214 l~e~l~~~l~~~G~~i~~n~~V~~I~~~~~~~~~~~~~~~~~~~~~~~~d~vIsT~Pl  271 (474)
T PRK07208        214 LWEAAAEKLEAEGVKVVLNAKVTGLHHDGGRIVSVVAEDQDGNETTATGDQVISSMPL  271 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEEECCCCEEEEECCEEEECCCH
T ss_conf             9999999998729878669878999834988999999842796369988879998859


No 369
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.67  E-value=0.019  Score=36.24  Aligned_cols=33  Identities=24%  Similarity=0.461  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+  ++|+|+|--|...|..|.+.|++|++||+++
T Consensus         1 M~--IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~   33 (455)
T PRK09496          1 MK--IIILGAGQVGGTLAERLVGENNDVTVIDTDE   33 (455)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             97--9999988899999999986899799998999


No 370
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.57  E-value=0.024  Score=35.64  Aligned_cols=32  Identities=34%  Similarity=0.548  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      .|+|||+|-+|+.||..+..+|.+|.++|.+.
T Consensus        22 ~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~   53 (150)
T pfam01262        22 KVVVIGGGVVGLGAAATAKGLGAPVTILDVRP   53 (150)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             79998987899999999986799899972999


No 371
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.50  E-value=0.0019  Score=43.53  Aligned_cols=46  Identities=13%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222232200234420146872169997213321100000232045312103
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..|++..+..+..+...++...+.+   ++  .++.++.++.|-|....+.
T Consensus       118 ~~i~~~~~~~~~~~~~~~~~~~~~~---~~--~~i~~~llIgaDG~~S~vR  163 (374)
T PRK06617        118 PLITLIDNNQYQEVISHNDYSIIKF---DD--KQIKCNLLIICDGANSKVR  163 (374)
T ss_pred             CCCEEECCCCEEEEECCCCCEEEEC---CC--CEEEEEEEEEECCCCHHHH
T ss_conf             9948975751146652788269963---89--6785358999579851668


No 372
>KOG0029 consensus
Probab=95.50  E-value=0.0033  Score=41.81  Aligned_cols=40  Identities=35%  Similarity=0.501  Sum_probs=28.9

Q ss_pred             CCCCCCCHHHHHHHCCCCCC-EEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             22232200234420146872-169997213321100000232045
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKGKA-QVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                      |.+++++..+.+|.-.+++. .+++.+.++    .++|.|+++.-
T Consensus       228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~----~~~d~vvvt~p  268 (501)
T KOG0029         228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDG----YEADAVVVTVP  268 (501)
T ss_pred             CCCEEECEEEEEEEEECCCCEEEEEECCCE----EEEEEEEEEEC
T ss_conf             863352216688897158834799977984----58407999705


No 373
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108   Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor .   This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=95.49  E-value=0.0042  Score=41.11  Aligned_cols=55  Identities=20%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf             2112222222222-2223220023442014-6872169997213321100000232045312
Q gi|254781053|r  216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEADAVLVAAGRRP  275 (466)
Q Consensus       216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P  275 (466)
                      ++.+.+++.+.+. |+.++. .++.++... .....+..  .+|  .+|.|-.|+-|.|..|
T Consensus        92 ~L~~~l~~~~~~~sG~~~~~-~ka~~~~~~~~~~~~v~~--~~g--~~i~Ar~V~Da~G~~~  148 (419)
T TIGR01790        92 QLHEELLQKCPEGSGVLWLE-AKAIKVEADAVSLSLVEC--AGG--QRIQARLVIDARGFKP  148 (419)
T ss_pred             HHHHHHHHHHHCCCCEEEEH-HHHHHHHHHHCCCCEEEC--CCC--EEEEEEEEEECCCCCC
T ss_conf             99999998620037613301-356666544055111442--897--3784007883257776


No 374
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.47  E-value=0.0024  Score=42.85  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             222222322002344201468721699972133211000002320453
Q gi|254781053|r  226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       226 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ++.|++|++|+.|++|+..++++.++.  .++  .++++|.|++|+.-
T Consensus       230 ~~lg~~i~l~~~V~~I~~~~~~~~v~~--~~g--~~~~aD~VV~a~p~  273 (452)
T PRK11883        230 EKLPATIHKSTSVTKIDKSGDGYEITL--SNG--GEITADAVIVAVPH  273 (452)
T ss_pred             HHCCCEEEECCEEEEEEEECCEEEEEE--CCC--CEEECCEEEECCCH
T ss_conf             865997996888889999399899998--899--69995989989898


No 375
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253   This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=95.46  E-value=0.011  Score=38.18  Aligned_cols=52  Identities=23%  Similarity=0.372  Sum_probs=24.2

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCC----CCEEEEEEEC------CCCCCCEEEEEEECCCCEEEE
Q ss_conf             2222222322002344201468----7216999721------332110000023204531210
Q gi|254781053|r  225 MSKQGMNFQLNSKVSSVKKVKG----KAQVVYRSTD------DEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       225 l~~~gV~i~~~~~v~~i~~~~~----~~~v~~~~~~------g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      -.+.|-+++.+ .+++++...+    ...+++++.+      ++..++++|.||=|-|=..+|
T Consensus       106 A~kaGAe~~~g-~f~~~~~d~~GWds~~~~~~~~~~G~k~ag~~~~~v~~~~VIGADGA~S~v  167 (408)
T TIGR02023       106 AQKAGAELIEG-LFKKLERDEDGWDSRVTLQYREKDGKKEAGEEKKSVEADVVIGADGANSKV  167 (408)
T ss_pred             HHHHHHHHHHH-HHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCHH
T ss_conf             87621476656-755201567777552589987677751256777737898876044788658


No 376
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=95.37  E-value=0.0031  Score=42.00  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCCCCCCCCCEE------ECCCCEEECCCCCC
Q ss_conf             422333776333------02684870243335
Q gi|254781053|r  292 RGCIEIGGQFQT------SISTIYAIGDVVRG  317 (466)
Q Consensus       292 ~G~I~vd~~~~T------s~p~IyA~GDv~g~  317 (466)
                      .|.|.||+++|+      .+||.||+|.|+++
T Consensus       357 ~GGl~id~~~qVld~~g~~IpGLYAaGe~a~g  388 (401)
T pfam00890       357 MGGVRTDENGRVLDADGQPIPGLYAAGEVACG  388 (401)
T ss_pred             CCCEEECCCCEEECCCCCEECCEEEECCCCCC
T ss_conf             45817981763878999891898871167656


No 377
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA    [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29  E-value=0.0085  Score=38.87  Aligned_cols=36  Identities=14%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             CCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             76333-02684870243335434430001232012011
Q gi|254781053|r  299 GQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       299 ~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      ..++| -++|.|-||-++|.--. ..|..||.+|.-|.
T Consensus       352 ~tLEtK~I~GLf~AGQINGTtGY-EEAAaQGliAGiNA  388 (621)
T COG0445         352 PTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINA  388 (621)
T ss_pred             CCHHHCEECCEEECCCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf             41322264462775513687336-77876248888999


No 378
>PRK07233 hypothetical protein; Provisional
Probab=95.28  E-value=0.0031  Score=42.00  Aligned_cols=37  Identities=32%  Similarity=0.647  Sum_probs=35.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             9999898668999999998799399993799715025
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      |||||||.+||+||.+|++.|.+|+|+|+++.+||-|
T Consensus         2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~   38 (430)
T PRK07233          2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLA   38 (430)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf             8999977899999999983999889995899895997


No 379
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.27  E-value=0.0027  Score=42.51  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             93319999898668999999998799399993799715
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYG   38 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~G   38 (466)
                      ||  |+|||||..|+++|.+|+++|.+|+|||+++..|
T Consensus         1 m~--VvIIGaGi~G~stA~~La~~G~~V~vler~~~~~   36 (416)
T PRK00711          1 MR--VVVLGSGVVGVTSAWYLARAGHEVTVIDRQPGPA   36 (416)
T ss_pred             CE--EEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             97--9999944999999999996899689996999985


No 380
>KOG2614 consensus
Probab=95.24  E-value=0.0051  Score=40.47  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=14.7

Q ss_pred             CCEEECCCCCCC--CC---CCEECCCCCCEEECC
Q ss_conf             848702433354--34---430001232012011
Q gi|254781053|r  307 TIYAIGDVVRGP--ML---AHKAEDEGIAVAEII  335 (466)
Q Consensus       307 ~IyA~GDv~g~~--~l---~~~A~~~g~~aa~~i  335 (466)
                      +|=.+||....+  .+   ..-|...+.+.++-+
T Consensus       289 ~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L  322 (420)
T KOG2614         289 NVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECL  322 (420)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             1899634313368766655432478899999999


No 381
>PRK06185 hypothetical protein; Provisional
Probab=95.21  E-value=0.0023  Score=43.02  Aligned_cols=51  Identities=24%  Similarity=0.444  Sum_probs=38.1

Q ss_pred             CCCCCCCCCHHHHHHHCCCCCCE-EEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             22222322002344201468721-69997213321100000232045312103
Q gi|254781053|r  227 KQGMNFQLNSKVSSVKKVKGKAQ-VVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       227 ~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      ..+++++++++++++..+++.+. +.+...++ +.++.+|.|+-|-|+...+.
T Consensus       121 ~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg-~~~i~adlvVGADG~~S~VR  172 (409)
T PRK06185        121 YPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDG-ELEIRADLTVGADGRHSRVR  172 (409)
T ss_pred             CCCCEEEECCEEEEEEEECCCEEEEEEECCCC-CEEEEEEEEEECCCCCCHHH
T ss_conf             89959996888899999599089999984898-58999729997389984789


No 382
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.14  E-value=0.037  Score=34.19  Aligned_cols=33  Identities=21%  Similarity=0.510  Sum_probs=30.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+  ++|||+|.-|++.|..|.+.|..|++||+++
T Consensus         1 m~--iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MK--IIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             98--9998985788999999987899089997688


No 383
>PRK11445 putative oxidoreductase; Provisional
Probab=95.12  E-value=0.0038  Score=41.41  Aligned_cols=50  Identities=18%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222232200234420146872169997213321100000232045312103
Q gi|254781053|r  228 QGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       228 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      .+..++.+..+.+++..+++..+++.. +++..++.++.|+-|-|....+.
T Consensus       111 ~~~~~~~~~~~~~i~~~~~g~~v~~~~-~g~~~~~~a~~iIGADGanS~Vr  160 (348)
T PRK11445        111 ASVEVYHNSLCRKIWREDDGYHVIFRA-DGWEQHITARYLVGADGANSMVR  160 (348)
T ss_pred             HCCCEEEEEEEEEEEECCCEEEEEEEE-CCEEEEEEECEEEECCCCCCHHH
T ss_conf             287389714899999839807999971-89078987378998989775887


No 384
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324   These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=95.12  E-value=0.033  Score=34.61  Aligned_cols=54  Identities=22%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCC--CCEEEEEEECCCCEE
Q ss_conf             222222222222232200234420146872169997213321--100000232045312
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPI--NIEADAVLVAAGRRP  275 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~--~i~~D~vl~a~G~~P  275 (466)
                      +...+.|++.|++++.+ +-+=+  ....+.|.-.++.++..  ++.++.+|+|+|-+|
T Consensus       105 ~lY~~~L~~AGv~Ll~G-rA~~v--d~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrp  160 (478)
T TIGR01424       105 GLYKKLLAKAGVELLEG-RAELV--DPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRP  160 (478)
T ss_pred             HHHHHHHHHHCEEEEEC-CEEEE--CCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCC
T ss_conf             88899888533044304-33783--6815797410378788316787759999877878


No 385
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.05  E-value=0.0031  Score=42.06  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||  |.|||+|.-|...|..|++.|.+|+++.+++
T Consensus         1 Mk--I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~   33 (307)
T PRK06522          1 MK--IAILGAGAIGGLFGARLAQAGHDVTLVARGA   33 (307)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             98--9999914999999999984899889997888


No 386
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.99  E-value=0.0034  Score=41.75  Aligned_cols=32  Identities=25%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9331999989866899999999879939999379
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      ||  |+|+|+|.-|...|..|++.|.+|+++-+.
T Consensus         1 Mk--I~I~GaGAiG~~~a~~L~~~g~~V~lv~r~   32 (306)
T PRK12921          1 MK--IAVVGAGAVGGTFGARLLEAGRDVTFLGRS   32 (306)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             98--999992499999999998369988999700


No 387
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=94.97  E-value=0.044  Score=33.66  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=31.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||  |.|||.|.-|+..|..+++.|.+|+-+|.++
T Consensus         1 Mk--I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~   33 (185)
T pfam03721         1 MR--IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ   33 (185)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             97--9998978748999999994899399997998


No 388
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.95  E-value=0.046  Score=33.54  Aligned_cols=40  Identities=28%  Similarity=0.388  Sum_probs=34.7

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             3319999898668999999998799399993799715025
Q gi|254781053|r    2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         2 ~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      .|||+|.|-|.---..+..++..|++|+.||+++.+|++-
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~   45 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS   45 (434)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             0018996266899999888622675179970787667533


No 389
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.90  E-value=0.012  Score=37.81  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -+|||||-=|+.||..|.+.|.+|.+++-.+
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~  178 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP  178 (793)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             5897551141678878874797348987336


No 390
>PRK07588 hypothetical protein; Provisional
Probab=94.88  E-value=0.0044  Score=40.97  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9331999989866899999999879939999379971
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      ||  |+|||||+||+++|..|++.|.+|+|+|+.+.+
T Consensus         1 mk--VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~   35 (391)
T PRK07588          1 MK--IAISGAGIAGATLAHWLQRTGHEPTLIERAPKL   35 (391)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             97--999993289999999998689998999038988


No 391
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.85  E-value=0.034  Score=34.49  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             319999898668999999998799399993799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      --|-|||||-||-.||.+++++|.+|.|.|-.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP   36 (439)
T ss_pred             CCEEEECCCCCCCHHHHHHHHCCCCEEEEECCC
T ss_conf             725897565445199999987698379997045


No 392
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.84  E-value=0.005  Score=40.55  Aligned_cols=56  Identities=13%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             2222222222-22232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQ-GMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+++. +|++++++++++++..++++.+++.  +|  .++++|.|+-|-|....+.
T Consensus       113 ~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~--dG--~~~~adlvVGADG~~S~vR  169 (396)
T PRK08163        113 LSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQ--QG--NRWTGDALIGCDGVKSVVR  169 (396)
T ss_pred             HHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEEC--CC--CEEEEEEEEECCCCCCHHH
T ss_conf             999999985698178709999999953997999988--99--8998769996488773688


No 393
>KOG4405 consensus
Probab=94.84  E-value=0.035  Score=34.42  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=34.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf             3199998986689999999987993999937997150
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGG   39 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GG   39 (466)
                      |||||||-|.----.|..+++.|.+|+=+|+++.+||
T Consensus         9 fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405           9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             4389981798489999986003770586068655577


No 394
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627   L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.69  E-value=0.082  Score=31.71  Aligned_cols=42  Identities=31%  Similarity=0.487  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCCC-HHHHHHCC
Q ss_conf             5741111113332101234454332013220-1220-11100001
Q gi|254781053|r  165 TGALSFSSVPKNLLVIGAGVIGLELGSVWTR-LGSC-VKIIEHSG  207 (466)
Q Consensus       165 ~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~~-lG~~-Vtli~~~~  207 (466)
                      +++++.+-..++++|.|+|+||+ ||-+-++ .|+. |-+.+.++
T Consensus       153 hTvL~~~~~G~~vlv~GaGPiGl-ma~AVAKa~GA~~Vi~~d~ne  196 (341)
T TIGR00692       153 HTVLESDLAGEDVLVIGAGPIGL-MAVAVAKAAGARNVIVIDKNE  196 (341)
T ss_pred             HHHHCCCCCCCCEEEECCCHHHH-HHHHHHHHHCCCEEEEECCCH
T ss_conf             46525776887189985774789-999998772784059965864


No 395
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=94.63  E-value=0.0088  Score=38.77  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCC
Q ss_conf             3321012344543320132201220111000011122
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILN  211 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~  211 (466)
                      -.++|||+|+.|+-.|..|++-|.||.++||+..+-.
T Consensus        18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GG   54 (229)
T pfam01946        18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG   54 (229)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             6889988781799999999878985999964526888


No 396
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.53  E-value=0.0037  Score=41.53  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HCCCCHHHHHHCCCCCCC--C-----CCC---CCCCCC
Q ss_conf             53210024530574111111333210123445433201322-012201110000111221--2-----222---112222
Q gi|254781053|r  154 IDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWT-RLGSCVKIIEHSGTILNG--M-----DKE---IAAHCL  222 (466)
Q Consensus       154 ~~~~~~~~~t~~~~~~l~~~P~~ivIIGgG~ig~E~A~~~~-~lG~~Vtli~~~~~ll~~--~-----d~~---~~~~~~  222 (466)
                      .++.++.++|+      +..|-|++|||+|+.|+=.|+.|- .-+.+|+++||.|-+...  +     +|+   +.+.+.
T Consensus        25 ~~~~~~~~~~~------~~rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRyGVAPDHpevKnv~~~f~   98 (506)
T PTZ00188         25 LPFTGKCFLTN------EAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYRTFD   98 (506)
T ss_pred             CCHHHHHCCCC------CCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             33001000247------887657999888838999999996389977988826898874111046889856606899999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             222222222322002344201468721699972133211000002320453
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +.+.+.+++++-|.++-+    +    +++     ++..-.+|.|++|+|-
T Consensus        99 ~~a~~p~~rF~GNV~vG~----D----itl-----~eL~~~YdAVVlA~GA  136 (506)
T PTZ00188         99 LVFSSPNYRFFGNVHVGV----D----LKM-----EELRRHYNCVIFCCGA  136 (506)
T ss_pred             HHHCCCCEEEEECEEECC----C----CCH-----HHHHHHCCEEEEECCC
T ss_conf             996589759994733489----8----899-----9998638999994797


No 397
>KOG1298 consensus
Probab=94.48  E-value=0.017  Score=36.60  Aligned_cols=46  Identities=20%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CCCCCCCHHHHHHHCCCC-CCEEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf             222322002344201468-72169997213321100000232045312
Q gi|254781053|r  229 GMNFQLNSKVSSVKKVKG-KAQVVYRSTDDEPINIEADAVLVAAGRRP  275 (466)
Q Consensus       229 gV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~i~~D~vl~a~G~~P  275 (466)
                      +|++..+ +|.++.++++ -..|++++..+++.+..+-.-++|-|.-.
T Consensus       162 NV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfS  208 (509)
T KOG1298         162 NVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFS  208 (509)
T ss_pred             CEEEEEE-EHHHHHHCCCEEEEEEEECCCCCEEEEECCEEEEECCHHH
T ss_conf             7088610-2787873168597589862788557873555899412568


No 398
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.47  E-value=0.02  Score=36.15  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             CCCCCCCCCCEEECCCCEEECCCCCCCCCCCEECC
Q ss_conf             42233377633302684870243335434430001
Q gi|254781053|r  292 RGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAED  326 (466)
Q Consensus       292 ~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~  326 (466)
                      .|.|.||.+.||++||.||||.|+++.   |-|++
T Consensus       404 MGGI~vD~~~~T~I~GLyAaGE~a~gv---HGANR  435 (638)
T PRK07573        404 MGGLWVDYNLMSTIPGLFVIGEANFSD---HGANR  435 (638)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCC---CCCCC
T ss_conf             379668877655258718854347576---54212


No 399
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=94.46  E-value=0.012  Score=37.76  Aligned_cols=37  Identities=14%  Similarity=0.215  Sum_probs=21.3

Q ss_pred             CCEEEEC----CCCCCCCCCCCCCCEE-----ECCCCEEECCCCCC
Q ss_conf             8400001----2676422333776333-----02684870243335
Q gi|254781053|r  281 GLEEIGI----NIDHRGCIEIGGQFQT-----SISTIYAIGDVVRG  317 (466)
Q Consensus       281 ~Le~~gi----~~~~~G~I~vd~~~~T-----s~p~IyA~GDv~g~  317 (466)
                      +|+++-+    -+..+=||.-+.-|..     +..++|++|-.+|.
T Consensus       307 gLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGv  352 (444)
T TIGR00137       307 GLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGV  352 (444)
T ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCC
T ss_conf             8431478850743111112763565575304771331331400030


No 400
>KOG1439 consensus
Probab=94.45  E-value=0.017  Score=36.65  Aligned_cols=41  Identities=32%  Similarity=0.423  Sum_probs=34.4

Q ss_pred             CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             93--319999898668999999998799399993799715025
Q gi|254781053|r    1 MV--YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         1 M~--YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      |.  |||+|+|-|---...+..++..|++|+.||+++.+||+-
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s   43 (440)
T KOG1439           1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES   43 (440)
T ss_pred             CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCCCC
T ss_conf             9875149997377364100000257695899970788777644


No 401
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.44  E-value=0.055  Score=32.93  Aligned_cols=36  Identities=36%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC
Q ss_conf             133321012344543320132201220111000011
Q gi|254781053|r  173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT  208 (466)
Q Consensus       173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~  208 (466)
                      .|-+++|||+|..|+.-+..-.++|..|+.++.++.
T Consensus       164 pPAkVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~  199 (510)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (510)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             885289974647779999999627978999658788


No 402
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.44  E-value=0.007  Score=39.50  Aligned_cols=53  Identities=19%  Similarity=0.331  Sum_probs=40.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             11222222222222232200234420146872169997213321100000232045
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                      +.+.+.+.+++.|.+|++|+.|++|+..++++.++... ++  +++.+|.|++|+.
T Consensus       210 ~~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~~-~g--~~~~ad~VI~a~p  262 (430)
T TIGR03467       210 FPEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIRA-GG--ETLTADAVVLAVP  262 (430)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEEC-CC--EEEECCEEEECCC
T ss_conf             99999999996497677698368999979988999950-98--7997799998989


No 403
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=94.43  E-value=0.0081  Score=39.00  Aligned_cols=31  Identities=23%  Similarity=0.511  Sum_probs=27.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|+|+|.-|...|..|++.|.+|+++.+.+
T Consensus         1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~   31 (150)
T pfam02558         1 IAILGAGAVGSLYGARLARAGHDVTLIARGR   31 (150)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999668999999999997799289997563


No 404
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.41  E-value=0.0069  Score=39.54  Aligned_cols=38  Identities=13%  Similarity=0.225  Sum_probs=25.6

Q ss_pred             CCCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECC
Q ss_conf             3776333-02684870243335434430001232012011
Q gi|254781053|r  297 IGGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEII  335 (466)
Q Consensus       297 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i  335 (466)
                      .+..|+| .++|.|-||-++|.--. -.|..||.+|.-|.
T Consensus       352 L~~tLEtK~i~gLf~AGQINGTTGY-EEAAaQGliAGINA  390 (621)
T PRK05192        352 LKPTLETKKIKGLFFAGQINGTTGY-EEAAAQGLIAGINA  390 (621)
T ss_pred             HHHHHCCCCCCCEEECCCCCCCCHH-HHHHHCCHHHHHHH
T ss_conf             3335331655987777766775078-99885467989999


No 405
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.38  E-value=0.075  Score=31.98  Aligned_cols=34  Identities=26%  Similarity=0.537  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC
Q ss_conf             3210123445433201322012201110000111
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI  209 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l  209 (466)
                      |++|+|+|.+|.=+|..|++.|.+||++.|+++.
T Consensus         2 kI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~~   35 (307)
T PRK06522          2 KIAILGAGAIGGLFGARLAQAGHDVTLVARGATL   35 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf             8999991499999999998489988999788889


No 406
>PRK06184 hypothetical protein; Provisional
Probab=94.37  E-value=0.007  Score=39.48  Aligned_cols=59  Identities=8%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEC
Q ss_conf             222222222222232200234420146872169997213321100000232045312103
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTK  278 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~  278 (466)
                      +.+.+.+.+.|+++++++++++++++++++.+++.+.++ .+++.+++++-|-|.+..+.
T Consensus       116 ~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~-~~~i~a~ylVGaDGa~S~VR  174 (503)
T PRK06184        116 EILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAG-EETVRARYLVGADGGRSFVR  174 (503)
T ss_pred             HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCC-CEEEEEEEEECCCCCCHHHH
T ss_conf             999999986798699476688999819989999985997-18999877741577774668


No 407
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.36  E-value=0.0068  Score=39.58  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9331999989866899999999879939999379
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      ||.-|+|||+|.-|...|..|++.|.+|++|.+.
T Consensus         1 ~mmkI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~   34 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             9477999896799999999998589987999567


No 408
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.36  E-value=0.0087  Score=38.78  Aligned_cols=43  Identities=28%  Similarity=0.529  Sum_probs=35.4

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC
Q ss_conf             1333210123445433201322012201110000111221222
Q gi|254781053|r  173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDK  215 (466)
Q Consensus       173 ~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~  215 (466)
                      .|.+++|+|||.+|.|-|-+...+|.+||+++++..-|+..|.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd  209 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD  209 (371)
T ss_pred             CCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf             7760899877612406999972368706999527788764067


No 409
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338   This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=94.29  E-value=0.024  Score=35.53  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999989866899999999879939999379
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      -+|+|||..-|.||=-|+..|..|++.=|.
T Consensus       191 TLvVGasYVALECaGFL~~~g~dV~V~VRS  220 (513)
T TIGR01438       191 TLVVGASYVALECAGFLAALGLDVTVLVRS  220 (513)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             578776142357788986339964999988


No 410
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.28  E-value=0.0089  Score=38.72  Aligned_cols=49  Identities=20%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCEEEEEEE-CCCCCCCEEEEEEECCCC
Q ss_conf             2222222322002344201468721699972-133211000002320453
Q gi|254781053|r  225 MSKQGMNFQLNSKVSSVKKVKGKAQVVYRST-DDEPINIEADAVLVAAGR  273 (466)
Q Consensus       225 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~i~~D~vl~a~G~  273 (466)
                      -.+.|-.+...++|+++..+++...+.+++. .|++.++.++.|+.|+|-
T Consensus       165 A~~~GA~i~ny~~V~~~~~~g~~~~v~~~d~~tg~~~~v~ak~VVNAtGp  214 (503)
T PRK13369        165 AAERGATILTRTRCVSARREGGLWRLETRNSDTGETRTFRARALVNAAGP  214 (503)
T ss_pred             HHHCCCHHHHCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             99878523307368877862648999999878995899985389986672


No 411
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.20  E-value=0.0079  Score=39.10  Aligned_cols=48  Identities=17%  Similarity=0.280  Sum_probs=27.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             222222222222232200234420146872169997213321100000232045
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                      +.+.+.|.+.  .+..++.++.++..+++..+++.  ++  .++++|.|++|+-
T Consensus       230 ~aL~~~L~~~--~i~~~~~~~~i~~~~~~~~v~~~--~~--~~~~~d~VV~a~P  277 (466)
T PRK12416        230 DRLEEVLTET--VVKKGAVTTAVSKQGDRYEISFA--NH--ESIQADYVVLAAP  277 (466)
T ss_pred             HHHHHHHCCC--EEECCCEEEEEEECCCCEEEEEC--CC--CEEEECEEEECCC
T ss_conf             9999873535--47848558889876995899957--99--8787366997688


No 412
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533    Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=94.16  E-value=0.04  Score=33.97  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-EEEEEEECC--CCCCCEEEEEEECCCCE--EE---ECCCC----CE
Q ss_conf             211222222222222232200234420146872-169997213--32110000023204531--21---03678----40
Q gi|254781053|r  216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKA-QVVYRSTDD--EPINIEADAVLVAAGRR--PY---TKGLG----LE  283 (466)
Q Consensus       216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~g--~~~~i~~D~vl~a~G~~--Pn---~~~l~----Le  283 (466)
                      ..+.+|...+++.+++|.+.+-+++|.-++... .|++..++.  .+.+-..--||++.|-.  |.   .+++|    |.
T Consensus       200 aaraYL~pA~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL~lSGiG~aehL~  279 (540)
T TIGR01810       200 AARAYLDPALKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLLQLSGIGDAEHLK  279 (540)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHH
T ss_conf             44666446640787200142222000330883799888228973300001244578833412135899762897179998


Q ss_pred             EEECCCCCCCCCCCCCCCEEECCCCEEECCCCCC
Q ss_conf             0001267642233377633302684870243335
Q gi|254781053|r  284 EIGINIDHRGCIEIGGQFQTSISTIYAIGDVVRG  317 (466)
Q Consensus       284 ~~gi~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~  317 (466)
                      +.||++--+ .+=|-++|| .+=-+|.==.|..+
T Consensus       280 e~gI~~~~~-lPGVGeNl~-DHlE~Y~Q~~ck~P  311 (540)
T TIGR01810       280 ELGIELKVE-LPGVGENLQ-DHLEVYLQYACKKP  311 (540)
T ss_pred             HCCCCEEEC-CCCCCCCHH-HHHHHHHHHHCCCC
T ss_conf             558960652-787876334-35642322422887


No 413
>PRK06126 hypothetical protein; Provisional
Probab=94.13  E-value=0.009  Score=38.69  Aligned_cols=42  Identities=17%  Similarity=0.209  Sum_probs=23.0

Q ss_pred             CCEEEEEEEE--EEC-CCCCCC--CCC-CCC-CCCCCCEEECCCCCCCC
Q ss_conf             4310110011--100-222102--357-521-12322100004676652
Q gi|254781053|r  105 NKIITYHGSA--RIV-SNNKIL--VKG-SSS-EETIEAKNIVIATGSEA  146 (466)
Q Consensus       105 ~~V~~~~g~a--~~~-~~~~v~--V~~-~~~-~~~i~ad~iviATGs~p  146 (466)
                      .++++..|+-  .|. +...|.  +.. +++ .++++++++|=|=|++.
T Consensus       140 ~gv~v~~g~~~~~~~qd~~gV~~~~~~~~~g~~~~i~A~ylVGaDGarS  188 (545)
T PRK06126        140 PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS  188 (545)
T ss_pred             CCCEEECCCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf             9988980778999998389469999989999489998779997478873


No 414
>PRK12839 hypothetical protein; Provisional
Probab=94.11  E-value=0.011  Score=38.06  Aligned_cols=56  Identities=18%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CE-EEEEEECCCCCCCEE-EEEEECCCC
Q ss_conf             1122222222222223220023442014687-21-699972133211000-002320453
Q gi|254781053|r  217 IAAHCLKIMSKQGMNFQLNSKVSSVKKVKGK-AQ-VVYRSTDDEPINIEA-DAVLVAAGR  273 (466)
Q Consensus       217 ~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~-~~-v~~~~~~g~~~~i~~-D~vl~a~G~  273 (466)
                      +...+.+..++.||++++++.++++..++++ +. |.....+++ ..+.+ ..||+|+|=
T Consensus       218 l~~~l~~~~~~~Gv~i~~~t~~~~Li~d~~G~V~GV~~~~~~g~-~~i~a~kgVVLATGG  276 (574)
T PRK12839        218 LTGRLLTSADDLGVDLRVSTSAVSLNTDNAGRVTGVKVQTPDGL-VDFEATRGVVLATGG  276 (574)
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEEECCCE-EEEEECCEEEECCCC
T ss_conf             99999999998298699666147987617984888999817951-999832358990388


No 415
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=94.09  E-value=0.016  Score=36.83  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC
Q ss_conf             332101234454332013220122011100001112
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL  210 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll  210 (466)
                      ..++|+|+|+.|+-.|.++++-|.+|++++|+-.+-
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G   66 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG   66 (262)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf             267998768505789999986796499997301468


No 416
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.06  E-value=0.0034  Score=41.74  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=12.9

Q ss_pred             CHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             98899999999998789878996
Q gi|254781053|r  417 SAGEMIHEAAVLMEFGGSSEDLA  439 (466)
Q Consensus       417 ~a~eli~~~a~ai~~~~t~~~l~  439 (466)
                      +..|.+.+....-+.|..+=|..
T Consensus       641 t~edsv~la~~l~~~GvD~IdvS  663 (770)
T PRK08255        641 TPDDAVEIARAFKAAGADMIDVS  663 (770)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             99999999999997499899957


No 417
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733   4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria.   This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=94.05  E-value=0.02  Score=36.14  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCCHHHHHH---HCC-CCCCEEEEEEECCCCCCCEEEEEEECCCCEE
Q ss_conf             2222222223220023442---014-6872169997213321100000232045312
Q gi|254781053|r  223 KIMSKQGMNFQLNSKVSSV---KKV-KGKAQVVYRSTDDEPINIEADAVLVAAGRRP  275 (466)
Q Consensus       223 ~~l~~~gV~i~~~~~v~~i---~~~-~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~P  275 (466)
                      +.-++.|-++.+++.-.++   +.+ +.+..|++.. +|+..+|+||.|-=|-|+..
T Consensus       111 ~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~-dG~~~~~dCDfIAGCDGFHG  166 (393)
T TIGR02360       111 EAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFER-DGEEHRIDCDFIAGCDGFHG  166 (393)
T ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEE-CCCEEEEEEEEEECCCCCCC
T ss_conf             999863895564114321126567888952587778-79177764026752788868


No 418
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=94.05  E-value=0.0094  Score=38.54  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             31999989866899999999879939999379971
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTY   37 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~   37 (466)
                      =||+|||||++|+++|..|++.|.+|+|+|+.+.+
T Consensus         2 ~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~   36 (349)
T pfam01494         2 TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATT   36 (349)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             97899992889999999998779989999289998


No 419
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.97  E-value=0.059  Score=32.75  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=13.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             8986689999999987993999937
Q gi|254781053|r    9 GGGPAGYACAIKAAQLKNKVAIIEK   33 (466)
Q Consensus         9 G~G~AG~~aA~~~~~~G~~V~lIE~   33 (466)
                      |--|++.   ..+.+.|++|.+=+.
T Consensus        17 altP~~V---~~l~~~GheVlVe~g   38 (371)
T COG0686          17 ALTPASV---RELVNHGHEVLVETG   38 (371)
T ss_pred             CCCHHHH---HHHHHCCCEEEEECC
T ss_conf             3575769---999737958999658


No 420
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295   This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=93.92  E-value=0.015  Score=37.13  Aligned_cols=187  Identities=18%  Similarity=0.284  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCC--------------CEEEE-EEECCCCCCCEEEEEEECCC-----CE
Q ss_conf             2112222222222-2223220023442014687--------------21699-97213321100000232045-----31
Q gi|254781053|r  216 EIAAHCLKIMSKQ-GMNFQLNSKVSSVKKVKGK--------------AQVVY-RSTDDEPINIEADAVLVAAG-----RR  274 (466)
Q Consensus       216 ~~~~~~~~~l~~~-gV~i~~~~~v~~i~~~~~~--------------~~v~~-~~~~g~~~~i~~D~vl~a~G-----~~  274 (466)
                      ++.+.+.+.|.+. .|+++...++.+|+.+.+.              ..+++ .++.-.+.++.++.|+.|-|     ..
T Consensus       119 ~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~  198 (425)
T TIGR01984       119 DLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDAN  198 (425)
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf             99999999986256651125753211210578630005666655103578883088756405553088985586331356


Q ss_pred             EEECCCCCEEEECCCCCCCCCCCC-CCCEEEC-CCCEEECCCCCCCCCCCEECCCCCCEEECCC-CCCCCC--CCCC--C
Q ss_conf             210367840000126764223337-7633302-6848702433354344300012320120111-222222--2333--3
Q gi|254781053|r  275 PYTKGLGLEEIGINIDHRGCIEIG-GQFQTSI-STIYAIGDVVRGPMLAHKAEDEGIAVAEIIS-GQKGHV--NYGI--I  347 (466)
Q Consensus       275 Pn~~~l~Le~~gi~~~~~G~I~vd-~~~~Ts~-p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~-~~~~~~--~~~~--i  347 (466)
                      -...    +..+|.      ...- +|-||+. -||=            +..-+++ .|.+.+. ..+..+  ..+.  .
T Consensus       199 S~~r----~~~~i~------~~~~R~y~QtAlian~~------------~~~pH~~-~A~ERFt~~GPlALLP~~d~q~~  255 (425)
T TIGR01984       199 SKVR----ELLSIA------TEEHRDYEQTALIANVR------------VEQPHQG-CAFERFTPHGPLALLPLKDNQYR  255 (425)
T ss_pred             HHHH----HHCCCC------EEEECCCCEEEEEEECC------------CCCCCCC-CEEEEECCCCCEEECCCCCCCCC
T ss_conf             7889----963898------17860620033012310------------0357576-06844477778023467899972


Q ss_pred             CCCEEEHH-HHHH--HHHCHHHH-HH---CCCCEEEEEEEECCCCHHHHCCCCCEE-EEEEEECC--CCEEEEEEEECCC
Q ss_conf             22100014-4551--00147888-62---346658999960447034418898338-99999789--9869999998299
Q gi|254781053|r  348 PSVVYTHP-EVAS--IGKTEEQL-KC---EKKSYKVGKFPFSANGRARSMNSIDGF-VKILANEK--SDRVEGVHIIGGS  417 (466)
Q Consensus       348 p~~vft~p-eia~--vGlte~~a-~~---~~~~~~v~~~~~~~~~ra~~~~~~~g~-~kli~~~~--~~~ilG~~~vg~~  417 (466)
                      -+.|||-| +-|.  .+|++++- .+   ....+.-+++        ...++-..| +++++.++  .+|+   -++| +
T Consensus       256 ~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~--------~~~G~r~~yPL~l~~a~~~v~~R~---vliG-N  323 (425)
T TIGR01984       256 LSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKI--------TQVGERKAYPLKLVIAEEQVSHRV---VLIG-N  323 (425)
T ss_pred             EEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--------HHCCCCCCCHHHHHHHHHCCCCCE---EEEE-C
T ss_conf             388971897899998668988999998651222542057--------432751004366786210146727---9986-5


Q ss_pred             HHHHHHHHH-HHHHCCCCHHHHH
Q ss_conf             889999999-9998789878996
Q gi|254781053|r  418 AGEMIHEAA-VLMEFGGSSEDLA  439 (466)
Q Consensus       418 a~eli~~~a-~ai~~~~t~~~l~  439 (466)
                      |+..+|++| .-.  ++.++|..
T Consensus       324 AAqTlHPIAGQGf--NLGlRDv~  344 (425)
T TIGR01984       324 AAQTLHPIAGQGF--NLGLRDVL  344 (425)
T ss_pred             CHHHHCCHHHHCC--CCHHHHHH
T ss_conf             1333301455301--63289999


No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.91  E-value=0.1  Score=30.97  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||  |.|||.|.-|+..|..+++.|.+|+-+|.++
T Consensus         1 Mk--I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~   33 (411)
T TIGR03026         1 MK--IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             97--9998978779999999994899489998999


No 422
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280   This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=93.89  E-value=0.062  Score=32.60  Aligned_cols=28  Identities=43%  Similarity=0.508  Sum_probs=26.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999898668999999998799399993
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIE   32 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE   32 (466)
                      |+|||+|-||.+||..+++.|..|..+-
T Consensus         1 viVVGtGLaG~~A~~~lae~G~~V~~F~   28 (620)
T TIGR01811         1 VIVVGTGLAGGSAAAKLAELGYHVKLFS   28 (620)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9685565347899999986488512544


No 423
>KOG4716 consensus
Probab=93.84  E-value=0.15  Score=29.76  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=14.3

Q ss_pred             EEEEEECCCCCCCEEEEEEECCCCEEEE
Q ss_conf             6999721332110000023204531210
Q gi|254781053|r  250 VVYRSTDDEPINIEADAVLVAAGRRPYT  277 (466)
Q Consensus       250 v~~~~~~g~~~~i~~D~vl~a~G~~Pn~  277 (466)
                      +..++.+++...+.++.+++|+|-+|.-
T Consensus       148 I~at~~~gk~~~~ta~~fvIatG~RPrY  175 (503)
T KOG4716         148 IKATNKKGKERFLTAENFVIATGLRPRY  175 (503)
T ss_pred             EEEECCCCCEEEEECCEEEEEECCCCCC
T ss_conf             8985477845786145389972687789


No 424
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.82  E-value=0.01  Score=38.32  Aligned_cols=39  Identities=10%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             CCCCCEE-ECCCCEEECCCCCCCCCCCEECCCCCCEEECCC
Q ss_conf             3776333-026848702433354344300012320120111
Q gi|254781053|r  297 IGGQFQT-SISTIYAIGDVVRGPMLAHKAEDEGIAVAEIIS  336 (466)
Q Consensus       297 vd~~~~T-s~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  336 (466)
                      .+..||| .+||+|-+|-++|.--. -.|..||.+|+-|.+
T Consensus       323 L~~tLe~K~~~~Lf~AGQInGt~GY-eEAAAqGliAGiNAa  362 (434)
T PRK05335        323 LDPTLQLKSRPNLFFAGQITGVEGY-VESAASGLLAGINAA  362 (434)
T ss_pred             CCCCEEECCCCCCEECCCCCCCHHH-HHHHHHHHHHHHHHH
T ss_conf             4844163487982771133674188-999998899999999


No 425
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=93.82  E-value=0.12  Score=30.44  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCEEEEECCCCCCEEE
Q ss_conf             199998986689999999987----99399993799715025
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQL----KNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~----G~~V~lIE~~~~~GGtC   41 (466)
                      +.-|||+|.|+|+||..|-+-    |.++.++|+.+..||.|
T Consensus         4 ~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GGs~   45 (500)
T pfam06100         4 SAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGSL   45 (500)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf             599989768999988988642787864138985588898654


No 426
>KOG2844 consensus
Probab=93.80  E-value=0.088  Score=31.48  Aligned_cols=33  Identities=36%  Similarity=0.557  Sum_probs=27.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEE-EECCC
Q ss_conf             3199998986689999999987993999-93799
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAI-IEKEK   35 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~l-IE~~~   35 (466)
                      =|+||||||.+|.++|..++++|.+.++ .|+..
T Consensus        40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~   73 (856)
T KOG2844          40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSR   73 (856)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             5579985785047899999971465247876411


No 427
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416   Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=93.76  E-value=0.069  Score=32.24  Aligned_cols=32  Identities=41%  Similarity=0.699  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             31999989866899999999879939999379
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      ||++|||+|.||..+|...++.|.++.++-..
T Consensus         1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~   32 (630)
T TIGR00136         1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLN   32 (630)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf             90688617620035677765417513455404


No 428
>PRK08132 hypothetical protein; Provisional
Probab=93.72  E-value=0.012  Score=37.87  Aligned_cols=42  Identities=14%  Similarity=0.178  Sum_probs=25.0

Q ss_pred             CCEEEEEEEE--EEC-CCC--CCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             4310110011--100-222--10235752112322100004676652
Q gi|254781053|r  105 NKIITYHGSA--RIV-SNN--KILVKGSSSEETIEAKNIVIATGSEA  146 (466)
Q Consensus       105 ~~V~~~~g~a--~~~-~~~--~v~V~~~~~~~~i~ad~iviATGs~p  146 (466)
                      .++++..|+-  .|. ++.  ++.+...++.++++++++|=|=|++.
T Consensus       139 ~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVGaDGarS  185 (549)
T PRK08132        139 PNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIACDGARS  185 (549)
T ss_pred             CCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
T ss_conf             99789957689999984994699998799868999889986377877


No 429
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=93.72  E-value=0.012  Score=37.87  Aligned_cols=42  Identities=17%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCEEEEEEEE--EEC-CCCCCCC--CC--CCCCCCCCCEEECCCCCCCC
Q ss_conf             4310110011--100-2221023--57--52112322100004676652
Q gi|254781053|r  105 NKIITYHGSA--RIV-SNNKILV--KG--SSSEETIEAKNIVIATGSEA  146 (466)
Q Consensus       105 ~~V~~~~g~a--~~~-~~~~v~V--~~--~~~~~~i~ad~iviATGs~p  146 (466)
                      .++++..|+-  .|. +.+.|.+  ..  ++..++++++++|=|=|++.
T Consensus       128 ~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ira~ylVGaDGa~S  176 (554)
T PRK06183        128 PHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVRARYVVGCDGANS  176 (554)
T ss_pred             CCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf             9989993889999997188427999977999579999768997178870


No 430
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.65  E-value=0.33  Score=27.31  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=27.6

Q ss_pred             CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9331999989866-8999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      || =++|-||+.+ |.+.|..+++.|.+|++.++++
T Consensus         1 MK-~vlITGassGIG~a~A~~~a~~G~~V~~~~r~~   35 (258)
T PRK08267          1 MK-SIFITGAASGIGRATARLFAARGWRVGAYDINE   35 (258)
T ss_pred             CC-EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99-899907226899999999998799999998889


No 431
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.65  E-value=0.013  Score=37.51  Aligned_cols=30  Identities=7%  Similarity=0.087  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             211222222222222232200234420146
Q gi|254781053|r  216 EIAAHCLKIMSKQGMNFQLNSKVSSVKKVK  245 (466)
Q Consensus       216 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~  245 (466)
                      -+-..+.+.+++.|.+++....+.++.-..
T Consensus       216 ~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~  245 (485)
T COG3349         216 VLLQPWTEYIPERGRKVHADYPVKELDLDG  245 (485)
T ss_pred             EEEEHHHHHCCCCCCEEECCCEEEEEECCC
T ss_conf             465003331302485310364445543145


No 432
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.59  E-value=0.12  Score=30.36  Aligned_cols=31  Identities=35%  Similarity=0.556  Sum_probs=17.7

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC
Q ss_conf             3210123445433201322012201110000
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHS  206 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~  206 (466)
                      |++|+|+|.+|.=+|..|++.|.+|+++.|.
T Consensus         4 kI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf             7999896799999999998589987999567


No 433
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231   The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=93.51  E-value=0.04  Score=33.95  Aligned_cols=100  Identities=22%  Similarity=0.313  Sum_probs=71.1

Q ss_pred             CCCCCCCCCCC-CCCCCCCHHHHHHHCCC-CCCEEEEEEE-C-CCCCCCEEEEEEECCCCEEEECCCCCEEEECCCCC--
Q ss_conf             12222222222-22232200234420146-8721699972-1-33211000002320453121036784000012676--
Q gi|254781053|r  218 AAHCLKIMSKQ-GMNFQLNSKVSSVKKVK-GKAQVVYRST-D-DEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDH--  291 (466)
Q Consensus       218 ~~~~~~~l~~~-gV~i~~~~~v~~i~~~~-~~~~v~~~~~-~-g~~~~i~~D~vl~a~G~~Pn~~~l~Le~~gi~~~~--  291 (466)
                      .+-+.++++.+ |+++++|.+|+.+..+. +...|++++. + |+.++|.+-.|++..|=-. .+ | |.+.||.-.+  
T Consensus       181 t~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG~A-L~-l-Lq~SGIpevKGF  257 (487)
T TIGR01320       181 TKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGGGA-LP-L-LQKSGIPEVKGF  257 (487)
T ss_pred             HHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCH-HH-H-HHHCCCCCCCCC
T ss_conf             99999997028981676385000110105885378841220888762676677897157416-88-9-886679876653


Q ss_pred             CCCCCCCCCCEEECCC--------CEEECCCCCCCCCC
Q ss_conf             4223337763330268--------48702433354344
Q gi|254781053|r  292 RGCIEIGGQFQTSIST--------IYAIGDVVRGPMLA  321 (466)
Q Consensus       292 ~G~I~vd~~~~Ts~p~--------IyA~GDv~g~~~l~  321 (466)
                      -||++--.++|.++|-        ||---.| |-||+.
T Consensus       258 aGFPvSG~fLR~~Npe~~~qH~AKVYG~A~v-GAPPmS  294 (487)
T TIGR01320       258 AGFPVSGLFLRCSNPELVEQHRAKVYGQASV-GAPPMS  294 (487)
T ss_pred             CCCCCCCEECCCCCHHHHHHHCCCCCCCCCC-CCCCCC
T ss_conf             3657555000178879998505621577887-648887


No 434
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=93.43  E-value=0.011  Score=38.08  Aligned_cols=26  Identities=12%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCE------EECCCCEEECCCCCC
Q ss_conf             42233377633------302684870243335
Q gi|254781053|r  292 RGCIEIGGQFQ------TSISTIYAIGDVVRG  317 (466)
Q Consensus       292 ~G~I~vd~~~~------Ts~p~IyA~GDv~g~  317 (466)
                      .|.+.+|+++|      +.+||.||+|.|+++
T Consensus       394 ~GGl~id~~~qVl~~~g~pI~GLYAaGe~~~G  425 (456)
T PRK08274        394 YLGLKVDETARVRFADGRPSPNLFAAGEMMAG  425 (456)
T ss_pred             CCCCEECCCCCEECCCCCEECCEEECCCCCCC
T ss_conf             67825998886578999883998878134646


No 435
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.38  E-value=0.013  Score=37.51  Aligned_cols=51  Identities=18%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             12222222222222322002344201468721699972133211000002320453
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      ...+.+..++.|++++.++.|++++..++++.  ++..+|   ++.+|.|++|+|-
T Consensus       152 ~~al~~~a~~~G~~i~~~~~V~~i~~~~~~v~--V~T~~G---~i~A~~VV~AaGa  202 (377)
T PRK11259        152 IKAHLRLAREAGAELLFNEPVTAIEHDDDGVT--VTTADG---TYSAKKLVVSAGT  202 (377)
T ss_pred             HHHHHHHHHHCCCCEEECEEEEEEEECCCEEE--EEECCC---EEECCEEEECCCH
T ss_conf             99999999974996581348886787499899--980894---7997979997565


No 436
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.35  E-value=0.14  Score=30.04  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||  +.|||.|..|++.|.-+++.|++|+.+|.++
T Consensus         1 Mk--I~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MK--ITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CC--EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             91--5898885568878999987098489995788


No 437
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.34  E-value=0.015  Score=37.12  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             CCCCCCCCCCEE-ECCCCEEECCCCC
Q ss_conf             422333776333-0268487024333
Q gi|254781053|r  292 RGCIEIGGQFQT-SISTIYAIGDVVR  316 (466)
Q Consensus       292 ~G~I~vd~~~~T-s~p~IyA~GDv~g  316 (466)
                      .|.|.||...+| ++||.||||+|++
T Consensus       346 mGGi~id~~~~~t~I~GLyAaGE~ag  371 (566)
T PRK06452        346 MGGIDVDITGRNPDLIGLFAAGEAAC  371 (566)
T ss_pred             CCCEEECCCCCCCCCCCCEECCCCCC
T ss_conf             68824676888677763243367551


No 438
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.29  E-value=0.017  Score=36.71  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|-.|+++|..|.+.|.+|++.|..+
T Consensus        12 i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (450)
T PRK02472         12 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   42 (450)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999778999999999998869899984886


No 439
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.27  E-value=0.16  Score=29.54  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|..|+++|..|.++|.+|.+.|..+
T Consensus        10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~   40 (501)
T PRK02006         10 VLVLGLGESGLAMARWCARHGCRLRVADTRE   40 (501)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9998336889999999997898499998999


No 440
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.26  E-value=0.018  Score=36.58  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|..|+++|..|.+.|.+|.++|..+
T Consensus        17 v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~   47 (481)
T PRK01438         17 VVVAGLGVSGFPAADALHELGASVTVVADGD   47 (481)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999575889999999996799899997998


No 441
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.19  E-value=0.15  Score=29.77  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ||  +.|||+|.-|-..|..|++.|.+|+++.+++
T Consensus         3 Mk--I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~   35 (305)
T PRK05708          3 MT--WHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf             88--9998823999999999984899739999478


No 442
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.98  E-value=0.018  Score=36.54  Aligned_cols=41  Identities=39%  Similarity=0.592  Sum_probs=38.1

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             93319999898668999999998799399993799715025
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTC   41 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~~~GGtC   41 (466)
                      |+|||||||||++||+||..|+++|++|+++|++...||-|
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a   42 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA   42 (487)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCE
T ss_conf             97629998988789999999996899799996378887724


No 443
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in  Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=92.86  E-value=0.021  Score=35.93  Aligned_cols=89  Identities=17%  Similarity=0.313  Sum_probs=42.8

Q ss_pred             HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHCC-CCCCEEEEEEECCCCCCCEEE
Q ss_conf             3220122011100001112212222112222222222-----2223220023442014-687216999721332110000
Q gi|254781053|r  192 VWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQ-----GMNFQLNSKVSSVKKV-KGKAQVVYRSTDDEPINIEAD  265 (466)
Q Consensus       192 ~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~-----gV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~i~~D  265 (466)
                      -|.++|.+|+|.+-...    -+|++.. +-+.|..+     -++ .+|-..+++... -+.+.|++...    ..+-.|
T Consensus       123 ~~~k~~~~vpl~~L~~~----~~p~i~~-l~~~l~~~v~~~Yt~K-~WGl~~~~~~~~v~~Rvpv~Ls~d----~~YF~d  192 (390)
T TIGR00031       123 RFKKFGAHVPLLELQEI----ADPDIQL-LYQFLYRKVYKPYTVK-QWGLPLEEIDPEVIGRVPVVLSED----SSYFPD  192 (390)
T ss_pred             HHHHHCCCCCHHHHHHC----CCCCHHH-HHHHHHHHHHCCCCCC-CCCCCHHHCCHHHHCCEEEEEECC----CCCCCC
T ss_conf             32320461556888411----6853788-9999999862477733-367885776801616353895036----886665


Q ss_pred             EEEECCCCEEEECCCC--CEE--EECCCC
Q ss_conf             0232045312103678--400--001267
Q gi|254781053|r  266 AVLVAAGRRPYTKGLG--LEE--IGINID  290 (466)
Q Consensus       266 ~vl~a~G~~Pn~~~l~--Le~--~gi~~~  290 (466)
                      +++=++-+-..|..+-  |+.  +.|.++
T Consensus       193 r~yQg~P~~GYT~~~~kML~~Plidl~Ln  221 (390)
T TIGR00031       193 RIYQGLPKGGYTKLFEKMLDHPLIDLKLN  221 (390)
T ss_pred             CEEECCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf             24622367535799899740984676308


No 444
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727   This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=92.82  E-value=0.019  Score=36.37  Aligned_cols=48  Identities=21%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             HHHHHHHCCCEEEEEEEEEEC----CCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             778764004310110011100----22210235752112322100004676652
Q gi|254781053|r   97 GINFLLKKNKIITYHGSARIV----SNNKILVKGSSSEETIEAKNIVIATGSEA  146 (466)
Q Consensus        97 ~~~~~~~~~~V~~~~g~a~~~----~~~~v~V~~~~~~~~i~ad~iviATGs~p  146 (466)
                      .+..-++..|+++++..+.+.    ..+.+.|.+..  ..+++|++|+|+|+-.
T Consensus       157 AL~~~~~~lGv~i~~~~~v~~~~~~~~~~~~~~~~~--~~~~ad~vV~A~G~wa  208 (357)
T TIGR02352       157 ALVKALEKLGVEIIEEVEVQEIEARGEKVTAVVTSS--GDVQADQVVLAAGAWA  208 (357)
T ss_pred             HHHHHHHHCCCEEEECCCEEEEECCCCEEEEECCCC--CCEECCEEEEECCCCH
T ss_conf             999999856947986253356432676698852885--4265574799357333


No 445
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.78  E-value=0.21  Score=28.69  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|..|+++|..|.+.|.+|.+.|..+
T Consensus        20 vlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~   50 (476)
T PRK00141         20 VLVAGAGVSGLGIAKMLSELGCDVVVADDNE   50 (476)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             8999227889999999997899799998998


No 446
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.77  E-value=0.53  Score=25.81  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9331999989866-8999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.--|+|.||+.+ |.+.|.++++.|.+|+++.++.
T Consensus         1 M~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~   36 (256)
T PRK07024          1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT   36 (256)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             999899984602999999999998899899998988


No 447
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.74  E-value=0.014  Score=37.20  Aligned_cols=135  Identities=19%  Similarity=0.294  Sum_probs=68.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC------CEEEEEECCCCHHHHHHHHHHHHHHHHHHHH-CCEEC
Q ss_conf             31999989866899999999879--939999379971------5025136673709899999999999986675-58164
Q gi|254781053|r    3 YDVAVVGGGPAGYACAIKAAQLK--NKVAIIEKEKTY------GGTCLNIGCIPSKALLHASEMYSHIAKEAGD-LGINI   73 (466)
Q Consensus         3 YDvvIIG~G~AG~~aA~~~~~~G--~~V~lIE~~~~~------GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~-~g~~~   73 (466)
                      +||+||||||+|+++|+.|++.|  .+|+++|+.+..      -+.+++..   |..++..-.++..+...... ..+..
T Consensus         2 ~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~---s~~~L~~lGv~~~l~~~~~~i~~~~v   78 (403)
T PRK07333          2 RDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAA---ARRMLEALGVWQEIAPEAQPITDMVI   78 (403)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHHCCCCEEEEE
T ss_conf             839999946999999999984699966999828866687888768886799---99999987987887751610027999


Q ss_pred             C-----C------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE--EE-CCCCCCCCCCCCCCC
Q ss_conf             7-----7------5328--------99999999999998777778764004310110011--10-022210235752112
Q gi|254781053|r   74 A-----S------CHLD--------LKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSA--RI-VSNNKILVKGSSSEE  131 (466)
Q Consensus        74 ~-----~------~~~d--------~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~~~g~a--~~-~~~~~v~V~~~~~~~  131 (466)
                      .     .      ..++        +..++.+ ..+    .......+++.+|++..+..  .+ .++..+.|...++ +
T Consensus        79 ~d~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~-~~l----~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g-~  152 (403)
T PRK07333         79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVEN-RVL----INALRKRAEALGIDLREATSVTDFETRDEGVTVTLADG-S  152 (403)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCEEEEEH-HHH----HHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCC-C
T ss_conf             84655776664200246434568873687458-999----99999999828998985885789997498079997899-8


Q ss_pred             CCCCEEECCCCCCCC
Q ss_conf             322100004676652
Q gi|254781053|r  132 TIEAKNIVIATGSEA  146 (466)
Q Consensus       132 ~i~ad~iviATGs~p  146 (466)
                      +++++.+|-|-|++.
T Consensus       153 ~i~a~llIgaDG~~S  167 (403)
T PRK07333        153 TLEARLLVAADGARS  167 (403)
T ss_pred             EEEEEEEEECCCCCH
T ss_conf             999869998348761


No 448
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.74  E-value=0.22  Score=28.62  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCC
Q ss_conf             3210123445433201322012201110000111
Q gi|254781053|r  176 NLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTI  209 (466)
Q Consensus       176 ~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l  209 (466)
                      |++|+|+|.+|.=+|..|++.|.+|+++.|++++
T Consensus         2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~~~   35 (306)
T PRK12921          2 KIAVVGAGAVGGTFGARLLEAGRDVTFLGRSARA   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             8999992499999999998369988999700099


No 449
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.69  E-value=0.2  Score=28.94  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCC
Q ss_conf             3332101234454332013220122-0111000011
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGT  208 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~  208 (466)
                      +++++|+|+|.+|+=.+.+++.+|. +|.+++..+.
T Consensus       121 g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~  156 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             998999907868999999999849987999919989


No 450
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.64  E-value=0.21  Score=28.77  Aligned_cols=13  Identities=15%  Similarity=0.235  Sum_probs=8.4

Q ss_pred             CCEEECCCCCCCC
Q ss_conf             2100004676652
Q gi|254781053|r  134 EAKNIVIATGSEA  146 (466)
Q Consensus       134 ~ad~iviATGs~p  146 (466)
                      .+|.+|++.|-.|
T Consensus        77 ~~d~vV~SPGI~~   89 (481)
T PRK01438         77 GTELVVTSPGWRP   89 (481)
T ss_pred             CCCEEEECCCCCC
T ss_conf             8999998997899


No 451
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.61  E-value=0.25  Score=28.18  Aligned_cols=34  Identities=35%  Similarity=0.517  Sum_probs=30.8

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf             9331999989866899999999879-9399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLK-NKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G-~~V~lIE~~~   35 (466)
                      || +++|||+|--|..+|..|++.+ .+|++.++..
T Consensus         1 m~-~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           1 MM-KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CC-CEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             97-289989866679999999857896299984888


No 452
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.60  E-value=0.019  Score=36.27  Aligned_cols=44  Identities=27%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             22222-222222322002344201468721699972133211000002320453
Q gi|254781053|r  221 CLKIM-SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       221 ~~~~l-~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      +.+.+ ++.|++++.++.|++++..      ++....+   ++.+|.|++|+|-
T Consensus       151 l~~~~a~~~Gv~~~~~t~V~~i~~~------~V~T~~G---~i~a~~VVvaaG~  195 (365)
T TIGR03364       151 LAAYLAEQHGVEFHWNTAVTSVETG------TVRTSRG---DVHADQVFVCPGA  195 (365)
T ss_pred             HHHHHHHHCCCEEEEEEEEEEEEEE------EEEECCC---EEEEEEEEECCCC
T ss_conf             9999998579289931289962014------8997892---8997669996684


No 453
>PRK05650 short chain dehydrogenase; Provisional
Probab=92.58  E-value=0.58  Score=25.52  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             999989866-8999999998799399993799
Q gi|254781053|r    5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|-||+.+ |.+.|.++++.|.+|+++++++
T Consensus         3 VlITGassGIG~alA~~la~~G~~V~l~~r~~   34 (270)
T PRK05650          3 VMITGAASGLGRAIALRWAREGWRLALADVNE   34 (270)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99988764999999999998899899997988


No 454
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=92.56  E-value=0.78  Score=24.56  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|||+|.-|..-|..++..|.+|.++|.++
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~   32 (180)
T pfam02737         2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISE   32 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             8999978899999999996799399997998


No 455
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.37  E-value=0.28  Score=27.80  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf             93319999898668999999998799--399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~   35 (466)
                      ||  |.|||+|.-|.++|..+...+.  +++|+|..+
T Consensus         1 mK--I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (312)
T PRK06223          1 MK--ISIIGAGNVGATLAHLLALKELGKDVVLFDIPE   35 (312)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             97--999996989999999998579987489976999


No 456
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.33  E-value=0.035  Score=34.36  Aligned_cols=20  Identities=15%  Similarity=0.488  Sum_probs=11.3

Q ss_pred             EEEEEEEECCCHHHHHHHHH
Q ss_conf             69999998299889999999
Q gi|254781053|r  407 RVEGVHIIGGSAGEMIHEAA  426 (466)
Q Consensus       407 ~ilG~~~vg~~a~eli~~~a  426 (466)
                      ++-.+-++|.++.++...+.
T Consensus       383 ~vk~v~l~G~~~~~i~~~l~  402 (476)
T PRK00141        383 RIKAALVLGADRAEIVAAVK  402 (476)
T ss_pred             HCEEEEEECCCHHHHHHHHH
T ss_conf             31099997689899999998


No 457
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105   Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=92.15  E-value=0.028  Score=35.10  Aligned_cols=86  Identities=20%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHCCCC-----
Q ss_conf             2101234454332013220122011100001---1122122221122222222--22222322002344201468-----
Q gi|254781053|r  177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSG---TILNGMDKEIAAHCLKIMS--KQGMNFQLNSKVSSVKKVKG-----  246 (466)
Q Consensus       177 ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~---~ll~~~d~~~~~~~~~~l~--~~gV~i~~~~~v~~i~~~~~-----  246 (466)
                      -+.||+-+. +=  ++|+-    ++-+|+..   .+..++ ..+.+.+.+..+  +.|.++.+|++|.+++...+     
T Consensus       194 ~l~~Gg~P~-~~--S~Y~L----is~le~~~GV~fP~GG~-~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~  265 (526)
T TIGR02734       194 ALFVGGNPF-TS--SIYAL----ISALEREWGVWFPRGGT-GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVAT  265 (526)
T ss_pred             CEECCCCCH-HH--HHHHH----HHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEE
T ss_conf             321069831-68--99999----98754426740156538-899999999997468746997455311446216742331


Q ss_pred             -CCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             -72169997213321100000232045
Q gi|254781053|r  247 -KAQVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       247 -~~~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                       .....+.  ..+.+.++||.|+.+.=
T Consensus       266 ~~~~~~v~--~~~~~~~~ad~VvSnAD  290 (526)
T TIGR02734       266 GGRATAVH--LADGERLDADAVVSNAD  290 (526)
T ss_pred             CCEEEEEE--CCCCEEEEEEEEEECCC
T ss_conf             65243455--06540331127887487


No 458
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.12  E-value=0.25  Score=28.14  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCC
Q ss_conf             3332101234454332013220122011100001
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSG  207 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~  207 (466)
                      .++++|+|+|.+|+=.+++.+.+|.+|..++.++
T Consensus       167 g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~  200 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP  200 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             9889998974899999999998599799994999


No 459
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.12  E-value=0.033  Score=34.55  Aligned_cols=31  Identities=23%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|||.|.-|+..|..+++.|++|+-+|.++
T Consensus         6 I~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~   36 (415)
T PRK11064          6 ISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             9998868778999999996889489998999


No 460
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=92.08  E-value=0.031  Score=34.77  Aligned_cols=16  Identities=19%  Similarity=0.553  Sum_probs=13.3

Q ss_pred             CEEECCCCEEECCCCC
Q ss_conf             3330268487024333
Q gi|254781053|r  301 FQTSISTIYAIGDVVR  316 (466)
Q Consensus       301 ~~Ts~p~IyA~GDv~g  316 (466)
                      .||-++|.|=|||=+.
T Consensus       461 sRTP~~gLWLvGDS~h  476 (499)
T TIGR02733       461 SRTPVKGLWLVGDSIH  476 (499)
T ss_pred             CCCCCCCCEEECCCCC
T ss_conf             7887667643035047


No 461
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.07  E-value=0.3  Score=27.60  Aligned_cols=11  Identities=27%  Similarity=0.341  Sum_probs=7.3

Q ss_pred             CCEEECCCCCC
Q ss_conf             21000046766
Q gi|254781053|r  134 EAKNIVIATGS  144 (466)
Q Consensus       134 ~ad~iviATGs  144 (466)
                      .+|.++||.|.
T Consensus        75 ~ad~iiI~V~T   85 (415)
T PRK11064         75 PADAFLIAVPT   85 (415)
T ss_pred             HCCEEEEECCC
T ss_conf             78999998899


No 462
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.01  E-value=0.27  Score=27.97  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=22.1

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             9999998299889999999999878987899637843778899999999986
Q gi|254781053|r  408 VEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSC  459 (466)
Q Consensus       408 ilG~~~vg~~a~eli~~~a~ai~~~~t~~~l~~~~~~hPt~~E~l~~aa~~~  459 (466)
                      +-.+-++|..+..+...+.   +.+.+       ++..+++.|+++.|...+
T Consensus       371 vk~v~~~G~~~~~i~~~~~---~~~~~-------~~~~~~l~~Av~~a~~~a  412 (450)
T PRK02472        371 VKAMVVFGETAPKLARAAN---KAGIT-------IVEADNVEDAVPKAYALS  412 (450)
T ss_pred             CCEEEEECCCHHHHHHHHH---HCCCE-------EEECCCHHHHHHHHHHHC
T ss_conf             6899996889999999997---37971-------898799999999999858


No 463
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.01  E-value=0.027  Score=35.18  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999989866899999999879939999379
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      |+|||+|.-|...|.+|++.|.+|+++-++
T Consensus         8 I~IiGaGAiG~~~a~~L~~aG~~V~li~r~   37 (313)
T PRK06249          8 IAIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             999991499999999999669956999675


No 464
>PRK07660 consensus
Probab=91.98  E-value=0.0096  Score=38.47  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -|.|||+|.=|..-|..++..|.+|+|+|..+
T Consensus         5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~   36 (283)
T PRK07660          5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQ   36 (283)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             89998969899999999996698189997988


No 465
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.92  E-value=0.031  Score=34.76  Aligned_cols=45  Identities=29%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CCCCCCCCCEEECCCCEEECCCCCCCCCCCEECCCCCCEEECCCC
Q ss_conf             223337763330268487024333543443000123201201112
Q gi|254781053|r  293 GCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISG  337 (466)
Q Consensus       293 G~I~vd~~~~Ts~p~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~  337 (466)
                      -.|.+|+.+.||++|+|++||.+|.--=-..|.-.|+.+|+.++.
T Consensus       437 ~ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~  481 (486)
T COG2509         437 VRIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR  481 (486)
T ss_pred             EEEEECCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             667616201220234477656555211257876102899999999


No 466
>PRK08275 putative oxidoreductase; Provisional
Probab=91.89  E-value=0.029  Score=35.01  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=29.7

Q ss_pred             CCCCCCCCCEEECCCCEEECCCCCCCCC-CCEECCCCCCEEECCCC
Q ss_conf             2233377633302684870243335434-43000123201201112
Q gi|254781053|r  293 GCIEIGGQFQTSISTIYAIGDVVRGPML-AHKAEDEGIAVAEIISG  337 (466)
Q Consensus       293 G~I~vd~~~~Ts~p~IyA~GDv~g~~~l-~~~A~~~g~~aa~~i~~  337 (466)
                      |.|+||.+.||++||.||||+|++...- ..-|.-.|+.|++++..
T Consensus       357 gGI~vD~~~~T~I~GLyAaGE~a~~g~Nsl~~alV~G~~Ag~~aa~  402 (554)
T PRK08275        357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAE  402 (554)
T ss_pred             CEEEECCCCCEECCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             5399889986503544550023335554126778879999999999


No 467
>KOG0405 consensus
Probab=91.85  E-value=0.092  Score=31.35  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEECC
Q ss_conf             12222222222222322002344201468721699972133211000002320453121036
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKG  279 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~~Pn~~~  279 (466)
                      ....++.|.+.+|+++.+.- . +. .++.  +.+...++....+.+..+|+|+|-+|....
T Consensus       113 ngIY~~~L~k~~V~~i~G~a-~-f~-~~~~--v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn  169 (478)
T KOG0405         113 NGIYKRNLAKAAVKLIEGRA-R-FV-SPGE--VEVEVNDGTKIVYTAKHILIATGGRPIIPN  169 (478)
T ss_pred             HHHHHHHCCCCCEEEEEEEE-E-EC-CCCC--EEEEECCCEEEEEECCEEEEEECCCCCCCC
T ss_conf             78988542315406996267-8-75-8994--479953881578721408997378467899


No 468
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.76  E-value=0.33  Score=27.31  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             CCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9331999989866-8999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      || -|+|.||+.+ |.+.|.++++.|.+|+++.++.
T Consensus         1 MK-~vlITGassGIG~a~A~~la~~G~~v~l~~R~~   35 (243)
T PRK07102          1 MK-KILIIGATSDIARACARRYAAAGARLYLAARDT   35 (243)
T ss_pred             CC-EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99-799915745999999999998799899998988


No 469
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731    Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=91.68  E-value=0.23  Score=28.43  Aligned_cols=31  Identities=23%  Similarity=0.450  Sum_probs=25.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf             9999898668999999998799-399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKN-KVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~-~V~lIE~~~   35 (466)
                      |+|||+|.=|-.++.+|+.+|. ++.+||.+.
T Consensus        24 VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~   55 (210)
T TIGR02356        24 VLIIGAGGLGSPAALYLAAAGVGTITIVDDDH   55 (210)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf             59997261456899999828883789985167


No 470
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=91.65  E-value=0.033  Score=34.61  Aligned_cols=48  Identities=19%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf             1222222222222232200234420146872169997213321100000232045
Q gi|254781053|r  218 AAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAG  272 (466)
Q Consensus       218 ~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G  272 (466)
                      .+.+.+.++   .+++++++|+++.....+.+.+..  +++  .+.+|.|++++-
T Consensus       218 ~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~--~g~--~~~~D~VI~t~p  265 (444)
T COG1232         218 IEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDV--GGE--KITADGVISTAP  265 (444)
T ss_pred             HHHHHHHHH---HCEEECCEEEEEEECCCCCEEEEC--CCC--EEECCEEEECCC
T ss_conf             999998743---033516645688872786189976--870--677356899377


No 471
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=91.62  E-value=0.047  Score=33.45  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=15.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf             22222222222223220023442014
Q gi|254781053|r  219 AHCLKIMSKQGMNFQLNSKVSSVKKV  244 (466)
Q Consensus       219 ~~~~~~l~~~gV~i~~~~~v~~i~~~  244 (466)
                      +.+++.|+..+|++.+|+.-..+...
T Consensus       199 ~~~~kMl~hp~I~V~Lntd~~~~~~~  224 (374)
T COG0562         199 AMFEKMLDHPNIDVRLNTDFFDVKDQ  224 (374)
T ss_pred             HHHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf             99999865888269956868887644


No 472
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.57  E-value=0.32  Score=27.40  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCC-CHHHHHHCCC
Q ss_conf             3332101234454332013220122-0111000011
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGS-CVKIIEHSGT  208 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~-~Vtli~~~~~  208 (466)
                      .++++|+|+|.+|+=.+++...+|. +|.++++.++
T Consensus       177 g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~  212 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR  212 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             988999673769999999999839918999919889


No 473
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.54  E-value=0.064  Score=32.48  Aligned_cols=14  Identities=29%  Similarity=0.510  Sum_probs=10.2

Q ss_pred             CCEEECCCCCCCCC
Q ss_conf             21000046766524
Q gi|254781053|r  134 EAKNIVIATGSEAS  147 (466)
Q Consensus       134 ~ad~iviATGs~p~  147 (466)
                      .+|-++||+|.-+.
T Consensus        76 ~adv~fIavgTP~~   89 (414)
T COG1004          76 DADVVFIAVGTPPD   89 (414)
T ss_pred             CCCEEEEECCCCCC
T ss_conf             59779997489999


No 474
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.52  E-value=0.3  Score=27.65  Aligned_cols=99  Identities=17%  Similarity=0.260  Sum_probs=62.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH-H-CCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             3332101234454332013220122011100-0-011122------------1222211222222222222232200234
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSCVKIIE-H-SGTILN------------GMDKEIAAHCLKIMSKQGMNFQLNSKVS  239 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~-~-~~~ll~------------~~d~~~~~~~~~~l~~~gV~i~~~~~v~  239 (466)
                      |=.++|||||+-|.-.|-+-+|-|.+.-++. | +.++|.            ...|.++..+++..++..|++....+.+
T Consensus       211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~  290 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS  290 (520)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             83499986886316789999861211100156518820000033330056545466899999998764682455334342


Q ss_pred             HHHCCC-CCCEEEEEEECCCCCCCEEEEEEECCCCE
Q ss_conf             420146-87216999721332110000023204531
Q gi|254781053|r  240 SVKKVK-GKAQVVYRSTDDEPINIEADAVLVAAGRR  274 (466)
Q Consensus       240 ~i~~~~-~~~~v~~~~~~g~~~~i~~D~vl~a~G~~  274 (466)
                      ++++.. .+....++..+|  -.+.+-.+++++|-+
T Consensus       291 ~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGAr  324 (520)
T COG3634         291 KLEPAAVEGGLIEVELANG--AVLKARTVILATGAR  324 (520)
T ss_pred             CCEECCCCCCCEEEEECCC--CEECCCEEEEECCCC
T ss_conf             0201578886079995478--351131699842764


No 475
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.50  E-value=0.032  Score=34.67  Aligned_cols=51  Identities=25%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             CCCCCCCCCCCC-CCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf             122222222222-22322002344201468721699972133211000002320453
Q gi|254781053|r  218 AAHCLKIMSKQG-MNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGR  273 (466)
Q Consensus       218 ~~~~~~~l~~~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~a~G~  273 (466)
                      .+.+.+.+++.| ..+..++.+..++.. + ..+.+....+   ++.+|.|++|+|-
T Consensus       159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~-~-~~~~v~t~~g---~~~a~~vv~a~G~  210 (387)
T COG0665         159 TRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG---TIEADKVVLAAGA  210 (387)
T ss_pred             HHHHHHHHHHCCCCEEECCCCEEEEEEC-C-CEEEEEECCC---EEECCEEEECCCC
T ss_conf             9999999997399189723524677614-7-3589995897---0981989999996


No 476
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=91.44  E-value=0.28  Score=27.81  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|.-|...|..|.+.| +|++||+++
T Consensus         1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~   30 (115)
T pfam02254         1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDP   30 (115)
T ss_pred             CEEECCCHHHHHHHHHHHHCC-CEEEEECCH
T ss_conf             999878889999999998089-999999987


No 477
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=91.36  E-value=1.1  Score=23.62  Aligned_cols=22  Identities=9%  Similarity=0.161  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             6899999999879939999379
Q gi|254781053|r   13 AGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus        13 AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      +|--|=+.|+.-|.+|+||..+
T Consensus        28 SGsQAcKALkEEGy~viLVNsN   49 (1089)
T TIGR01369        28 SGSQACKALKEEGYEVILVNSN   49 (1089)
T ss_pred             HHHHHHHHHHHCCCEEEEECCC
T ss_conf             7899999987649579997588


No 478
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.35  E-value=0.45  Score=26.32  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf             93319999898668999999998799--399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKN--KVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~--~V~lIE~~~   35 (466)
                      ||  |.|||+|.-|.++|..+...+.  +++|+|..+
T Consensus         1 mK--I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~   35 (308)
T cd05292           1 MK--VAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             CE--EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             97--999994888999999998679988799991889


No 479
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.35  E-value=0.4  Score=26.68  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHC
Q ss_conf             11333210123445433201322012201110000
Q gi|254781053|r  172 SVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHS  206 (466)
Q Consensus       172 ~~P~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~  206 (466)
                      ..+.|++|+|+|.+|.=+|..|++.|.+||++.|+
T Consensus         3 ~~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~   37 (313)
T PRK06249          3 SETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             99888999991499999999999669956999675


No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.34  E-value=0.4  Score=26.67  Aligned_cols=30  Identities=30%  Similarity=0.626  Sum_probs=25.9

Q ss_pred             EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999989-866899999999879939999379
Q gi|254781053|r    5 VAVVGG-GPAGYACAIKAAQLKNKVAIIEKE   34 (466)
Q Consensus         5 vvIIG~-G~AG~~aA~~~~~~G~~V~lIE~~   34 (466)
                      ++|+|| ||-|..+|..+++.|.+|+|+-++
T Consensus        31 ~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~   61 (194)
T cd01078          31 AVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9998588578999999999839979999587


No 481
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.33  E-value=0.38  Score=26.88  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|+|.|-.|+++|..|.+.|.+|.+.|..+
T Consensus        12 v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~   42 (457)
T PRK01390         12 VALFGLGGSGLATARALKAGGAEVIAWDDNP   42 (457)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999436999999999997899799993992


No 482
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.31  E-value=0.012  Score=37.67  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -|.|||+|.-|-.-|..++..|.+|.++|.++
T Consensus         5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             89998978899999999995799389997998


No 483
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=91.24  E-value=0.35  Score=27.10  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCC
Q ss_conf             21012344543320132201220111000011
Q gi|254781053|r  177 LLVIGAGVIGLELGSVWTRLGSCVKIIEHSGT  208 (466)
Q Consensus       177 ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~  208 (466)
                      +.|+|+|.||.=+|..|++.|.+|+++.|+++
T Consensus         1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~~   32 (150)
T pfam02558         1 IAILGAGAVGSLYGARLARAGHDVTLIARGRH   32 (150)
T ss_pred             CEEECCCHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             99996689999999999977992899975636


No 484
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.23  E-value=0.36  Score=27.04  Aligned_cols=34  Identities=26%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             93319999898668999999998799399993799
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      || -|+|+|.|-.|.++|..|.+.|.+|.+.|...
T Consensus         3 ~K-kvlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~   36 (418)
T PRK00683          3 LQ-RVVVLGLGVTGKSVARFLAQKGVYVIGVDNSL   36 (418)
T ss_pred             CC-EEEEEEECHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf             86-69998088879999999997829899982981


No 485
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.16  E-value=0.045  Score=33.61  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=29.8

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCC
Q ss_conf             332101234454332013220122011100001112
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTIL  210 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll  210 (466)
                      -.++|||+|+.|+-.|..|++-|.+|.++||+-.+-
T Consensus        26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~G   61 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG   61 (257)
T ss_pred             CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             688998888279999999986896599997134688


No 486
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.15  E-value=0.85  Score=24.31  Aligned_cols=31  Identities=32%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|+|-|..|+++|..|.+.|.+|.+.|+.+
T Consensus        17 v~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~   47 (458)
T PRK01710         17 VAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999787889999999997889799998988


No 487
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.12  E-value=0.96  Score=23.93  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             999989866-8999999998799399993799
Q gi|254781053|r    5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|-|++.+ |.+.|..+++.|.+|+++.+++
T Consensus        11 VvITGASsGIGra~A~~fA~~Ga~Vvl~aR~~   42 (338)
T PRK07109         11 VVITGASAGVGRATARAFARRGAKVVLLARGE   42 (338)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99948434999999999998799899998999


No 488
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=91.11  E-value=0.041  Score=33.88  Aligned_cols=81  Identities=25%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             HHHHCCCCHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEE
Q ss_conf             32201220111000011122122--2211222222222222232200234420146872169997213321100000232
Q gi|254781053|r  192 VWTRLGSCVKIIEHSGTILNGMD--KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLV  269 (466)
Q Consensus       192 ~~~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl~  269 (466)
                      .+.++|.+-. .+...|+.|.-|  .++.+.+.+.+++.||+++++++|.+++..+.+..+..  .++  .++.||.+++
T Consensus        87 ~~e~~Gi~~~-e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t--~~g--~~i~~d~lil  161 (408)
T COG2081          87 WVEGLGIALK-EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT--SSG--ETVKCDSLIL  161 (408)
T ss_pred             HHHHCCCEEE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEC--CCC--CEEECCEEEE
T ss_conf             9986597157-7468525578666689999999999975958981464776763385589985--999--8898048999


Q ss_pred             CCC--CEEEE
Q ss_conf             045--31210
Q gi|254781053|r  270 AAG--RRPYT  277 (466)
Q Consensus       270 a~G--~~Pn~  277 (466)
                      |+|  ..|.+
T Consensus       162 AtGG~S~P~l  171 (408)
T COG2081         162 ATGGKSWPKL  171 (408)
T ss_pred             ECCCCCCCCC
T ss_conf             2288677878


No 489
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.09  E-value=1.1  Score=23.44  Aligned_cols=32  Identities=31%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -|.|||+|.-|..-|..+++.|.+|.++|.++
T Consensus         4 ~VaViGaG~mG~giA~~~a~~G~~V~l~D~~~   35 (308)
T PRK06129          4 SIAIVGAGLIGRAWAIVFARAGHRVRLWDADP   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             79997778999999999985899389998988


No 490
>PRK09117 consensus
Probab=90.99  E-value=0.014  Score=37.39  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             19999898668999999998799399993799
Q gi|254781053|r    4 DVAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         4 DvvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -|.|||+|.-|..-|..++..|.+|.|+|..+
T Consensus         4 ~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   35 (282)
T PRK09117          4 TVGIIGAGTMGNGIAQACAVAGLDVVMVDISD   35 (282)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             79998977999999999996799689998988


No 491
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=90.99  E-value=0.5  Score=26.00  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |.|||+|.=|.+.|..+++.|.+|.+..+++
T Consensus         3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~   33 (159)
T pfam01210         3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDE   33 (159)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             9999969999999999998799899999043


No 492
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.97  E-value=0.41  Score=26.61  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|..|+++|..|.+.|.+|.+.|.++
T Consensus        15 V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~   45 (487)
T PRK03369         15 VLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (487)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999156838999999997869799998982


No 493
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.93  E-value=0.42  Score=26.53  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCCC-HHHHHHCCC
Q ss_conf             33321012344543320132201220-111000011
Q gi|254781053|r  174 PKNLLVIGAGVIGLELGSVWTRLGSC-VKIIEHSGT  208 (466)
Q Consensus       174 P~~ivIIGgG~ig~E~A~~~~~lG~~-Vtli~~~~~  208 (466)
                      .++++|+|+|.+|+=.++.++.+|.+ |.+++.+++
T Consensus       170 g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~  205 (343)
T PRK09880        170 GKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPR  205 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             988999847767999999999869987999979789


No 494
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.93  E-value=0.45  Score=26.35  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|+|.|..|+++|..|.+.|.+|.+.|...
T Consensus         9 v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~   39 (438)
T PRK03806          9 VVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   39 (438)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999457888999999997899699998999


No 495
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.91  E-value=0.39  Score=26.78  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      ++|+|.|-.|+++|..|.+.|.+|.+.|..+
T Consensus        10 ~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~   40 (448)
T PRK03803         10 RIVVGLGKSGMSLVRFLARQGYQFAVTDTRE   40 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             8999989999999999997889599991899


No 496
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.88  E-value=0.41  Score=26.58  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999898668999999998799399993799
Q gi|254781053|r    5 VAVVGGGPAGYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~AG~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      -+|+|.|-.|+++|..|.++|.+|.+.|..+
T Consensus         3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~   33 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND   33 (459)
T ss_pred             EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999548999999999997899599998989


No 497
>PRK08251 short chain dehydrogenase; Provisional
Probab=90.87  E-value=1.1  Score=23.44  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             999989866-8999999998799399993799
Q gi|254781053|r    5 VAVVGGGPA-GYACAIKAAQLKNKVAIIEKEK   35 (466)
Q Consensus         5 vvIIG~G~A-G~~aA~~~~~~G~~V~lIE~~~   35 (466)
                      |+|.||+.+ |...|.++++.|.+|+++.++.
T Consensus         5 vlITGAssGIG~alA~~la~~G~~v~l~~r~~   36 (248)
T PRK08251          5 ILITGASSGLGAGMAREFAAKGRDLALCARRT   36 (248)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             99947863999999999998799899998988


No 498
>KOG1276 consensus
Probab=90.81  E-value=0.053  Score=33.08  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHCCC--CCCC-------CHHHHHHHHHHHHCC
Q ss_conf             998899999999998789878996378--4377-------889999999998608
Q gi|254781053|r  416 GSAGEMIHEAAVLMEFGGSSEDLARIC--HAHP-------TMSEAVREAALSCFD  461 (466)
Q Consensus       416 ~~a~eli~~~a~ai~~~~t~~~l~~~~--~~hP-------t~~E~l~~aa~~~~~  461 (466)
                      ++-+|++|...-++++-+.+..-....  |.|+       .=+....++|+.++.
T Consensus       402 ~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~  456 (491)
T KOG1276         402 PSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLT  456 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHCCCCEECCHHHHHHHHHHHHH
T ss_conf             9989999999999999858788765000021520354320226889999999997


No 499
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275   This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=90.77  E-value=0.33  Score=27.31  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEC
Q ss_conf             93319999898668999999998--7993999937
Q gi|254781053|r    1 MVYDVAVVGGGPAGYACAIKAAQ--LKNKVAIIEK   33 (466)
Q Consensus         1 M~YDvvIIG~G~AG~~aA~~~~~--~G~~V~lIE~   33 (466)
                      ||  |-|||||..|-+.|.++|+  ++.+++|+|=
T Consensus         2 kK--isvIGAGfvGaTTAf~lA~KeLard~VLlDi   34 (308)
T TIGR01763         2 KK--ISVIGAGFVGATTAFLLAEKELARDVVLLDI   34 (308)
T ss_pred             CE--EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             55--8997068612589999986740671689850


No 500
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=90.73  E-value=0.055  Score=32.98  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCC--CCHHHHHHC
Q ss_conf             33210123445433201322012--201110000
Q gi|254781053|r  175 KNLLVIGAGVIGLELGSVWTRLG--SCVKIIEHS  206 (466)
Q Consensus       175 ~~ivIIGgG~ig~E~A~~~~~lG--~~Vtli~~~  206 (466)
                      ..++|+|+|+.||-.|.++++-|  .||.++||+
T Consensus        22 ~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~   55 (283)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERK   55 (283)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             0667987897466899999842998069998511


Done!