HHsearch alignment for GI: 254781053 and conserved domain: pfam03486
>pfam03486 HI0933_like HI0933-like protein.
Probab=97.98 E-value=8.7e-07 Score=67.90 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=57.3
Q ss_pred HHHHHCCCCHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 132201220111000011122122--221122222222222223220023442014687216999721332110000023
Q gi|254781053|r 191 SVWTRLGSCVKIIEHSGTILNGMD--KEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVL 268 (466)
Q Consensus 191 ~~~~~lG~~Vtli~~~~~ll~~~d--~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vl 268 (466)
T Consensus 83 ~ff~~~Gl~~-~~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~----~~~~~~a~~vI 157 (405)
T pfam03486 83 AWFEELGVPL-KEEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDT----GGEELEADSLV 157 (405)
T ss_pred HHHHHCCCEE-EECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEE----CCCEEEECEEE
T ss_conf 9999779905-977899797898986999999999999779789958887899975994599994----89589727899
Q ss_pred ECCCCE--EEE
Q ss_conf 204531--210
Q gi|254781053|r 269 VAAGRR--PYT 277 (466)
Q Consensus 269 ~a~G~~--Pn~ 277 (466)
T Consensus 158 lAtGG~s~p~~ 168 (405)
T pfam03486 158 LATGGLSWPKT 168 (405)
T ss_pred EECCCCCCCCC
T ss_conf 90488665655