BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (466 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/466 (100%), Positives = 466/466 (100%) Query: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS Sbjct: 1 MVYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYS 60 Query: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN Sbjct: 61 HIAKEAGDLGINIASCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120 Query: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI Sbjct: 121 KILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVI 180 Query: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS Sbjct: 181 GAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSS 240 Query: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ Sbjct: 241 VKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHRGCIEIGGQ 300 Query: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI Sbjct: 301 FQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIPSVVYTHPEVASI 360 Query: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE Sbjct: 361 GKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGGSAGE 420 Query: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM Sbjct: 421 MIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQPIHM 466 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 279 bits (714), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 174/482 (36%), Positives = 270/482 (56%), Gaps = 23/482 (4%) Query: 2 VYDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSH 61 +YD+ ++G GPAGY AI+AAQL KVAI+E GG CLN GCIP+K+LL ++E+ H Sbjct: 4 LYDIILIGSGPAGYVAAIRAAQLGFKVAIVEY-AGLGGICLNWGCIPTKSLLRSAEILDH 62 Query: 62 IAKEAGDLGINIA-SCHLDLKKMMSYKKSIVESNTQGINFLLKKNKIITYHGSARIVSNN 120 I + A G+N+A +++ ++ + I +G+ FL+ KNK+ G A + + + Sbjct: 63 I-QNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPS 121 Query: 121 KILVKGSSS---------------EETIEAKNIVIATGSEASGLPGMSIDFDEQVIVSST 165 +I V S E T +AK+I+IATG+ + G I+ D +I + Sbjct: 122 EITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEG--IEPDSHLIWTYF 179 Query: 166 GALSFSSVPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIM 225 AL S PK+L+V+G+G IG+E S + L V +IE IL D EI+ + + Sbjct: 180 DALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSL 239 Query: 226 SKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEI 285 K+G+ SK+SSVK+ V D +++A+ +L++AG + + +GLE+I Sbjct: 240 QKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 Query: 286 GINIDHRGCIEIGGQFQTSISTIYAIGDVVRGPMLAHKAEDEGIAVAEIISGQKG--HVN 343 G+ + GCI + G +T++ IYAIGDV PMLAHKAE EGI E I+G+ ++ Sbjct: 300 GVKTSN-GCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358 Query: 344 YGIIPSVVYTHPEVASIGKTEEQLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANE 403 IP Y +P+VASIG TEE+ + + +VGK FSANG+A ++ G +K + N Sbjct: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418 Query: 404 KSDRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAVREAALSCFDQP 463 K+ V GVH++G E+I ++ M + E+L HPT+SE ++E+ L + + Sbjct: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETMKESILDAYGRA 478 Query: 464 IH 465 IH Sbjct: 479 IH 480 >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 183 bits (465), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 230/467 (49%), Gaps = 45/467 (9%) Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62 YD+ V+G G +G A AAQL KVAI E+ + GGTC+ GCIP K + +AS+ YS Sbjct: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQ-YSEY 62 Query: 63 AKEAGDLGINIASCHLDLKKMMSYKK---SIVES------NTQGINFLLKKNKIITYHGS 113 +++ G ++ D + +++ + S +ES + G+ K + + H S Sbjct: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH-S 121 Query: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD-EQVIVSSTGALSFSS 172 I + N+ TI ++ IV++TG G P +DF + ++S S S Sbjct: 122 VYIANLNR----------TITSRYIVVSTG----GSPN-RMDFKGSDLCITSDEIFSLKS 166 Query: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232 +P++ L+IG G I +E + LGS ++ +IL+ D +I +M +GM Sbjct: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 Query: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292 N + SV G+ + + +S ++ D V++A GR P T G+GLE++G+ +D Sbjct: 227 FHNDTIESVVSESGQLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 Query: 293 GCIEIGGQFQTSISTIYAIGDVV----RGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIP 348 G I +T++ +I+++GD+ P+ H A V + +Y ++P Sbjct: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA---ACFVETVFKDNPTIPDYDLVP 339 Query: 349 SVVYTHPEVASIGKTEE---QLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKS 405 + V++ PE+AS+G TEE Q C + YK FP R ++I +KI+ + + Sbjct: 340 TAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI---MKIIVHADN 396 Query: 406 DRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV 452 +V GVHI+G A E+I V ++ G +D R HPT SE + Sbjct: 397 HKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 5 VAVVGGGPAGYACAIKAAQLKNKVAII 31 + ++G GPAGY AI AA+ K II Sbjct: 8 ILIIGSGPAGYTAAIYAARAMLKPVII 34 >gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 27.3 bits (59), Expect = 0.55, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 376 VGKFPFSANGRARSMNSIDGFVKILANEKSDRVEGVHIIGG 416 + K F A+ ++ + D FVKI N S+ + + ++GG Sbjct: 5 IQKIHFKASNAKKAQEAYDKFVKIYGNSTSEEADVIVVLGG 45 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 26.6 bits (57), Expect = 0.82, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 208 TILNGMDKEIAAHCLKIMSKQGMNFQLNSKVSSVKKVKGKAQVVYRSTDDEPINIEAD 265 T ++GM + H MNF + V +VKG +VVY T P IE + Sbjct: 471 TSIDGMTADFYHH--------DMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 >gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] Length = 542 Score = 26.6 bits (57), Expect = 0.87, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 45 GCIPSKALLHASEMYSH-IAKEAGDLGINIASCHLDLKKMMSYKKSIV 91 GC P L+HA ++Y + ++ D G A+C D + M K I Sbjct: 246 GCHPDPNLIHAKDLYDRMMMHDSADFG---AACDGDGDRSMILGKGIF 290 >gi|254780563|ref|YP_003064976.1| extracellular solute-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 195 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 152 MSIDFDEQVIVSSTGALSFSSVPKNLL 178 M I FD QV+ ST + + +PK++ Sbjct: 115 MRISFDTQVLAYSTKRIKIADLPKSVF 141 >gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 7 VVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIG 45 ++ P Y C +++N + + E E G CL +G Sbjct: 513 ILSNEPGYYRCGAFGIRIENVLCVSEPETINNGECLMLG 551 >gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 6/40 (15%) Query: 340 GHVNYGIIPSVV-----YTHPEVASIGKTEEQLKCEKKSY 374 GH+N GI+P V + P +I T + LK +KK+Y Sbjct: 194 GHINVGIMPYVAKFNSSFYGPYRDAIS-TRDLLKGDKKTY 232 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 24.6 bits (52), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 153 SIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLEL 189 +ID DE+V+V ST L + + LV V L L Sbjct: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 >537021.9.peg.477_1 Length = 235 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLG 197 +SGL GM I F + + + A + S KNL +I +G + + L S+ LG Sbjct: 168 SSGLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLG 219 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Query: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAII-EKEKTYGGTCLN 43 YDV V+GGG AG A AA+L A+I K T G N Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGSMSCN 47 >gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 23.9 bits (50), Expect = 6.8, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 3 YDVAVVGGGPAGYACAIKAAQ 23 +DV ++G G AG AI AA+ Sbjct: 4 FDVIIIGSGLAGSVAAIGAAK 24 >gi|254781077|ref|YP_003065490.1| hypothetical protein CLIBASIA_04895 [Candidatus Liberibacter asiaticus str. psy62] Length = 111 Score = 23.5 bits (49), Expect = 8.3, Method: Composition-based stats. Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 217 IAAHCLKIMSKQGMNFQL 234 I HCL ++S G+N+ + Sbjct: 2 IILHCLSVISSMGINYNI 19 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.376 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 292,193 Number of Sequences: 1233 Number of extensions: 12338 Number of successful extensions: 66 Number of sequences better than 100.0: 19 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 20 length of query: 466 length of database: 328,796 effective HSP length: 77 effective length of query: 389 effective length of database: 233,855 effective search space: 90969595 effective search space used: 90969595 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)