HHsearch alignment for GI: 254781054 and conserved domain: COG2390

>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].

Probab=95.26  E-value=0.042  Score=33.88  Aligned_cols=64  Identities=17%  Similarity=0.103  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHH----HHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------HHHHHHHHHHCC
Q ss_conf             899999999999----838997899887917899999999998732870489618-------------899999987315
Q gi|254781054|r    4 LQMKRNAARRAI----QYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------SRNTENFCKIHH   66 (231)
Q Consensus         4 ~~~K~~~a~~A~----~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S~~t~~~a~~~g   66 (231)
T Consensus        94 ~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~  171 (321)
T COG2390          94 DSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTGGVGHADGSYNANTIALRLAEKLG  171 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             58999999999999998577999999925579999998559676--6883899888988877666678799999999849


Q ss_pred             CCC
Q ss_conf             786
Q gi|254781054|r   67 IPL   69 (231)
Q Consensus        67 i~~   69 (231)
T Consensus       172 ~~~  174 (321)
T COG2390         172 AES  174 (321)
T ss_pred             CCE
T ss_conf             917