Query gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 231
No_of_seqs 127 out of 1329
Neff 5.5
Searched_HMMs 39220
Date Mon May 30 05:39:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781054.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00021 rpiA ribose 5-phosph 100.0 0 0 624.5 21.7 220 6-226 1-236 (236)
2 PRK00702 ribose-5-phosphate is 100.0 0 0 565.3 23.4 221 1-227 1-221 (222)
3 PRK13978 ribose-5-phosphate is 100.0 0 0 559.0 25.4 224 2-231 3-228 (228)
4 COG0120 RpiA Ribose 5-phosphat 100.0 0 0 560.7 23.7 227 1-231 1-227 (227)
5 cd01398 RPI_A RPI_A: Ribose 5- 100.0 0 0 527.6 22.7 212 6-221 1-213 (213)
6 pfam06026 Rib_5-P_isom_A Ribos 100.0 0 0 443.0 16.0 171 49-225 1-171 (172)
7 KOG3075 consensus 100.0 0 0 424.8 20.5 227 3-231 24-258 (261)
8 pfam00455 DeoR Bacterial regul 99.1 2E-09 5.2E-14 79.3 11.0 117 5-126 2-139 (157)
9 PRK10906 DNA-binding transcrip 99.0 4.2E-09 1.1E-13 77.4 10.2 118 4-126 75-213 (252)
10 PRK10411 DNA-binding transcrip 99.0 4.6E-09 1.2E-13 77.2 10.0 117 4-126 77-214 (240)
11 PRK09802 DNA-binding transcrip 99.0 5.5E-09 1.4E-13 76.6 9.8 117 4-126 90-228 (269)
12 PRK10434 srlR DNA-bindng trans 98.9 1.2E-08 3E-13 74.6 10.5 117 4-126 75-213 (256)
13 PRK13509 transcriptional repre 98.9 1.8E-08 4.7E-13 73.4 9.2 117 4-126 77-212 (251)
14 PRK10681 DNA-binding transcrip 98.9 2.4E-08 6E-13 72.7 9.6 115 5-125 77-213 (252)
15 COG1349 GlpR Transcriptional r 98.7 1.5E-07 3.8E-12 67.8 9.1 118 4-127 75-214 (253)
16 COG1184 GCD2 Translation initi 97.5 0.0055 1.4E-07 39.4 12.0 119 4-127 103-236 (301)
17 COG2057 AtoA Acyl CoA:acetate/ 97.4 0.0021 5.4E-08 41.9 9.3 116 5-125 6-152 (225)
18 pfam01008 IF-2B Initiation fac 97.2 0.016 4.1E-07 36.4 12.2 129 4-137 91-235 (281)
19 PRK08535 translation initiatio 97.1 0.025 6.3E-07 35.3 12.5 128 5-137 105-248 (316)
20 PRK08335 translation initiatio 96.6 0.073 1.9E-06 32.4 12.3 129 4-137 93-236 (276)
21 KOG1466 consensus 96.4 0.081 2.1E-06 32.1 10.3 132 5-140 115-262 (313)
22 pfam04198 Sugar-bind Putative 95.9 0.019 4.9E-07 36.0 5.2 78 4-87 32-125 (255)
23 COG2390 DeoR Transcriptional r 95.3 0.042 1.1E-06 33.9 5.1 64 4-69 94-174 (321)
24 TIGR02428 pcaJ_scoB_fam 3-oxoa 94.6 0.067 1.7E-06 32.6 4.7 115 7-133 3-161 (208)
25 TIGR03458 YgfH_subfam succinat 94.4 0.4 1E-05 27.8 8.3 113 7-121 1-158 (485)
26 pfam02550 AcetylCoA_hydro Acet 94.0 0.043 1.1E-06 33.8 2.6 119 5-127 6-170 (198)
27 TIGR00511 aIF-2BII_fam transla 93.1 0.67 1.7E-05 26.4 7.5 121 6-130 102-238 (303)
28 PRK06372 translation initiatio 92.9 0.87 2.2E-05 25.7 9.2 116 6-127 73-200 (253)
29 COG0427 ACH1 Acetyl-CoA hydrol 92.4 0.37 9.5E-06 28.0 5.5 113 7-121 14-171 (501)
30 cd00458 SugarP_isomerase Sugar 91.1 0.32 8.1E-06 28.4 3.9 28 19-46 19-46 (169)
31 pfam01144 CoA_trans Coenzyme A 86.3 2 5.1E-05 23.4 5.3 41 7-48 1-46 (217)
32 PRK06239 consensus 84.8 3.5 8.9E-05 21.9 7.4 118 9-138 148-289 (336)
33 PRK09920 acetyl-CoA:acetoacety 82.8 1.6 4.2E-05 24.0 3.6 44 7-52 4-50 (220)
34 PRK06036 translation initiatio 82.4 4.4 0.00011 21.3 10.7 128 5-138 132-285 (339)
35 PRK06019 phosphoribosylaminoim 82.4 0.33 8.5E-06 28.3 -0.1 33 18-53 4-37 (377)
36 PRK05772 translation initiatio 82.0 4.6 0.00012 21.2 11.2 126 7-138 151-304 (365)
37 PRK02122 glucosamine-6-phospha 82.0 3.3 8.4E-05 22.1 4.9 147 2-148 43-231 (660)
38 COG1788 AtoD Acyl CoA:acetate/ 81.9 2.9 7.3E-05 22.5 4.5 46 6-53 3-51 (220)
39 TIGR02853 spore_dpaA dipicolin 81.5 2.6 6.5E-05 22.8 4.2 42 20-67 154-196 (288)
40 PRK06844 consensus 81.3 4.8 0.00012 21.1 12.7 129 5-138 138-293 (341)
41 PRK00443 nagB glucosamine-6-ph 79.8 5.2 0.00013 20.9 5.3 44 2-45 8-58 (264)
42 COG1102 Cmk Cytidylate kinase 79.7 0.79 2E-05 25.9 1.1 70 26-101 9-84 (179)
43 KOG1465 consensus 79.5 5.5 0.00014 20.7 8.2 132 6-142 148-301 (353)
44 PRK09762 galactosamine-6-phosp 79.5 5.5 0.00014 20.7 5.4 44 2-45 8-53 (236)
45 smart00829 PKS_ER Enoylreducta 78.8 5.8 0.00015 20.5 6.9 55 11-68 92-151 (288)
46 COG0138 PurH AICAR transformyl 77.0 2.7 6.9E-05 22.6 3.1 32 95-128 123-154 (515)
47 PTZ00285 glucosamine-6-phospha 76.9 6.6 0.00017 20.2 5.5 45 2-46 8-59 (253)
48 pfam06555 consensus 76.8 6.7 0.00017 20.2 7.7 175 6-224 19-199 (200)
49 pfam04223 CitF Citrate lyase, 75.5 7.2 0.00018 20.0 6.0 192 6-227 208-460 (466)
50 COG0371 GldA Glycerol dehydrog 74.3 7.8 0.0002 19.8 5.1 43 17-62 82-124 (360)
51 PRK05752 uroporphyrinogen-III 72.9 7.7 0.0002 19.8 4.6 138 13-152 48-200 (255)
52 PRK05720 mtnA methylthioribose 72.7 8.5 0.00022 19.5 9.4 127 6-137 137-293 (351)
53 cd05213 NAD_bind_Glutamyl_tRNA 71.7 8.9 0.00023 19.4 7.6 53 19-74 177-231 (311)
54 PRK12358 putative 6-phosphoglu 70.6 9.4 0.00024 19.2 5.8 44 2-45 8-53 (239)
55 PRK00881 purH bifunctional pho 69.2 9.8 0.00025 19.2 4.5 62 59-126 86-154 (514)
56 pfam02602 HEM4 Uroporphyrinoge 68.5 10 0.00027 19.0 5.1 138 12-153 31-185 (229)
57 TIGR01205 D_ala_D_alaTIGR D-al 67.0 3.2 8.2E-05 22.1 1.6 122 76-216 216-358 (375)
58 PRK11747 dinG ATP-dependent DN 64.7 12 0.00032 18.5 4.3 33 25-58 55-87 (697)
59 PRK03967 histidinol-phosphate 63.6 13 0.00033 18.4 7.4 112 3-122 57-177 (337)
60 PRK07106 5-aminoimidazole-4-ca 62.2 12 0.00032 18.5 3.9 23 103-125 219-241 (391)
61 PRK06371 translation initiatio 61.7 14 0.00036 18.2 12.9 127 6-138 122-276 (338)
62 PRK10867 signal recognition pa 59.5 15 0.00039 17.9 5.6 89 22-112 104-206 (453)
63 TIGR02173 cyt_kin_arch cytidyl 59.4 5.3 0.00013 20.8 1.6 50 27-83 10-62 (173)
64 TIGR01246 dapE_proteo succinyl 59.1 6 0.00015 20.5 1.8 200 17-217 89-360 (383)
65 TIGR01761 thiaz-red thiazoliny 58.9 6.8 0.00017 20.1 2.1 58 45-108 36-97 (378)
66 PRK00129 upp uracil phosphorib 58.2 15 0.00039 18.0 3.8 17 188-204 160-176 (208)
67 cd06578 HemD Uroporphyrinogen- 58.0 16 0.00041 17.8 4.5 137 12-153 41-192 (239)
68 PRK04457 spermidine synthase; 56.8 17 0.00044 17.7 12.4 63 17-88 66-130 (262)
69 pfam01182 Glucosamine_iso Gluc 55.3 15 0.00038 18.0 3.3 32 15-46 11-45 (236)
70 PRK00045 hemA glutamyl-tRNA re 55.3 18 0.00046 17.5 5.2 54 19-75 181-236 (429)
71 KOG2555 consensus 55.3 9.3 0.00024 19.3 2.3 109 11-129 18-156 (588)
72 TIGR02212 lolCE lipoprotein re 54.8 18 0.00047 17.5 5.0 58 157-222 47-105 (414)
73 COG4670 Acyl CoA:acetate/3-ket 53.5 19 0.00049 17.3 3.8 18 76-93 361-378 (527)
74 COG2230 Cfa Cyclopropane fatty 53.3 19 0.0005 17.3 6.9 160 5-190 55-228 (283)
75 PRK08577 hypothetical protein; 53.0 20 0.0005 17.3 7.1 93 113-209 31-131 (135)
76 PRK02186 argininosuccinate lya 51.6 20 0.00052 17.2 3.5 35 143-185 241-275 (892)
77 cd01399 GlcN6P_deaminase GlcN6 50.6 21 0.00055 17.0 4.5 41 4-44 1-43 (232)
78 PRK01372 ddl D-alanine--D-alan 49.9 7.6 0.00019 19.8 1.1 55 142-215 229-283 (304)
79 cd01400 6PGL 6PGL: 6-Phosphogl 48.3 23 0.00059 16.8 3.8 38 5-42 2-45 (219)
80 PRK06425 histidinol-phosphate 47.7 24 0.00061 16.8 9.2 115 3-123 42-164 (332)
81 PRK08334 translation initiatio 47.7 24 0.00061 16.8 12.3 127 6-137 146-298 (356)
82 TIGR03215 ac_ald_DH_ac acetald 47.6 24 0.00061 16.7 5.3 144 47-200 65-220 (285)
83 PRK10586 hypothetical protein; 47.2 24 0.00062 16.7 5.1 42 20-64 87-128 (362)
84 TIGR00699 GABAtrns_euk 4-amino 46.8 9.6 0.00024 19.2 1.2 26 174-202 47-72 (469)
85 cd02517 CMP-KDO-Synthetase CMP 46.7 25 0.00063 16.7 4.5 45 25-71 22-67 (239)
86 COG0363 NagB 6-phosphogluconol 46.5 25 0.00063 16.6 4.1 43 2-44 8-56 (238)
87 KOG0326 consensus 46.0 25 0.00064 16.6 5.0 91 26-122 131-236 (459)
88 CHL00194 ycf39 Ycf39; Provisio 45.6 12 0.00031 18.6 1.6 59 27-88 8-68 (319)
89 PRK13771 putative alcohol dehy 45.5 26 0.00066 16.5 6.2 58 11-70 151-211 (332)
90 PRK07392 threonine-phosphate d 44.9 26 0.00067 16.5 6.8 116 3-123 59-184 (358)
91 COG0182 Predicted translation 44.7 27 0.00068 16.5 5.6 123 6-137 135-288 (346)
92 PRK08087 L-fuculose phosphate 42.1 17 0.00043 17.7 1.9 99 1-129 1-102 (215)
93 PRK10754 quinone oxidoreductas 42.0 29 0.00074 16.2 4.9 56 10-68 127-187 (327)
94 TIGR00904 mreB cell shape dete 41.9 15 0.00039 18.0 1.6 11 21-31 155-165 (337)
95 pfam01761 DHQ_synthase 3-dehyd 41.7 30 0.00075 16.2 5.3 40 18-58 79-118 (310)
96 TIGR01139 cysK cysteine syntha 41.3 30 0.00076 16.1 3.2 36 19-55 265-301 (312)
97 pfam09370 TIM-br_sig_trns TIM- 41.1 30 0.00077 16.1 3.8 36 174-211 210-245 (268)
98 KOG0780 consensus 40.9 17 0.00044 17.6 1.8 99 22-122 105-224 (483)
99 pfam08934 Rb_C Rb C-terminal d 39.8 28 0.0007 16.4 2.7 55 51-112 80-134 (155)
100 PRK06015 keto-hydroxyglutarate 39.2 32 0.00082 15.9 6.2 48 20-71 65-113 (212)
101 PRK10132 hypothetical protein; 37.8 28 0.00072 16.3 2.5 35 7-41 71-105 (108)
102 KOG2888 consensus 37.8 5.4 0.00014 20.8 -1.2 111 21-152 111-236 (453)
103 TIGR00064 ftsY signal recognit 37.5 34 0.00087 15.8 5.2 64 22-87 86-160 (284)
104 TIGR00417 speE spermidine synt 37.4 5 0.00013 21.0 -1.4 15 22-36 80-94 (284)
105 PRK09423 gldA glycerol dehydro 36.6 35 0.0009 15.7 4.7 44 17-63 82-125 (366)
106 PRK06067 flagellar accessory p 36.6 35 0.0009 15.7 5.5 56 26-82 41-99 (241)
107 TIGR03286 methan_mark_15 putat 36.3 29 0.00074 16.2 2.3 30 6-35 127-158 (404)
108 TIGR02470 sucr_synth sucrose s 35.8 31 0.00079 16.1 2.4 33 189-224 560-598 (790)
109 KOG1197 consensus 35.6 37 0.00094 15.6 3.2 79 17-99 143-239 (336)
110 PRK05928 hemD uroporphyrinogen 35.5 37 0.00094 15.6 4.5 144 14-157 47-202 (252)
111 cd05017 SIS_PGI_PMI_1 The memb 35.5 37 0.00094 15.6 3.8 52 22-74 46-98 (119)
112 TIGR01923 menE O-succinylbenzo 35.4 37 0.00094 15.6 4.3 53 160-212 359-425 (490)
113 cd05565 PTS_IIB_lactose PTS_II 34.9 38 0.00096 15.5 4.0 33 58-90 64-96 (99)
114 KOG1467 consensus 34.5 38 0.00097 15.5 9.5 118 7-127 346-476 (556)
115 PRK04182 cytidylate kinase; Pr 33.8 16 0.00041 17.8 0.7 37 39-75 16-52 (178)
116 pfam01488 Shikimate_DH Shikima 33.5 40 0.001 15.4 5.0 53 11-66 3-57 (134)
117 TIGR01302 IMP_dehydrog inosine 33.4 18 0.00047 17.5 1.0 23 1-23 42-68 (476)
118 PRK04147 N-acetylneuraminate l 33.4 40 0.001 15.4 8.3 126 1-127 54-196 (294)
119 pfam05368 NmrA NmrA-like famil 33.2 22 0.00056 17.0 1.3 59 27-88 6-68 (232)
120 TIGR00502 nagB glucosamine-6-p 32.6 41 0.001 15.3 5.0 113 3-119 9-136 (260)
121 COG2921 Uncharacterized conser 32.4 41 0.0011 15.3 4.5 77 120-204 2-86 (90)
122 cd02410 archeal_CPSF_KH The ar 32.0 42 0.0011 15.2 3.3 70 35-105 27-100 (145)
123 PRK08056 threonine-phosphate d 31.2 43 0.0011 15.1 7.7 116 3-123 57-184 (356)
124 cd04874 ACT_Af1403 N-terminal 31.0 44 0.0011 15.1 7.5 67 136-208 4-70 (72)
125 pfam01081 Aldolase KDPG and KH 30.7 44 0.0011 15.1 6.7 48 20-71 58-106 (196)
126 pfam12048 DUF3530 Protein of u 30.6 44 0.0011 15.1 3.3 38 8-45 163-201 (294)
127 PRK10689 transcription-repair 30.5 45 0.0011 15.1 8.3 10 112-121 382-391 (1148)
128 cd00408 DHDPS-like Dihydrodipi 30.3 45 0.0011 15.0 7.5 132 1-135 47-201 (281)
129 COG1587 HemD Uroporphyrinogen- 29.9 46 0.0012 15.0 4.0 143 14-156 44-197 (248)
130 pfam09466 Yqai Hypothetical pr 29.8 28 0.0007 16.4 1.4 48 65-112 10-60 (71)
131 PRK08074 bifunctional ATP-depe 29.2 47 0.0012 14.9 3.1 31 24-55 284-314 (932)
132 TIGR01447 recD exodeoxyribonuc 29.1 47 0.0012 14.9 4.2 47 25-71 250-303 (753)
133 pfam03927 NapD NapD protein. U 28.9 47 0.0012 14.9 5.2 68 132-212 6-73 (78)
134 COG1199 DinG Rad3-related DNA 28.7 48 0.0012 14.9 3.6 72 24-107 41-112 (654)
135 PRK01966 ddl D-alanyl-alanine 28.4 24 0.00061 16.7 0.9 55 142-215 271-325 (344)
136 COG3688 Predicted RNA-binding 28.3 49 0.0012 14.8 3.0 35 28-62 79-114 (173)
137 PRK09098 type III secretion sy 28.2 49 0.0012 14.8 2.5 71 130-206 150-220 (229)
138 TIGR01425 SRP54_euk signal rec 28.0 49 0.0013 14.8 5.6 67 22-89 125-200 (453)
139 KOG1468 consensus 27.9 31 0.0008 16.0 1.4 102 31-139 174-295 (354)
140 pfam07021 MetW Methionine bios 27.9 49 0.0013 14.8 3.8 140 15-163 8-165 (193)
141 PRK11029 FtsH protease regulat 27.7 26 0.00066 16.5 0.9 23 172-194 79-103 (334)
142 pfam02348 CTP_transf_3 Cytidyl 27.5 50 0.0013 14.7 4.5 47 22-70 17-64 (197)
143 TIGR01846 type_I_sec_HlyB type 27.3 50 0.0013 14.7 2.9 22 175-196 86-109 (703)
144 KOG0346 consensus 27.2 50 0.0013 14.8 2.3 100 25-125 64-182 (569)
145 COG0421 SpeE Spermidine syntha 26.9 51 0.0013 14.7 5.2 83 19-124 78-160 (282)
146 PRK04998 hypothetical protein; 26.8 52 0.0013 14.7 5.3 77 121-205 3-85 (88)
147 PRK01581 speE spermidine synth 26.5 52 0.0013 14.6 5.3 73 56-129 85-179 (363)
148 PRK08904 consensus 26.4 52 0.0013 14.6 6.4 48 20-71 60-108 (207)
149 TIGR01584 citF citrate lyase, 26.4 53 0.0013 14.6 4.9 189 8-227 234-488 (496)
150 pfam05729 NACHT NACHT domain. 26.3 53 0.0013 14.6 3.7 77 75-154 78-163 (165)
151 PRK07455 keto-hydroxyglutarate 25.9 54 0.0014 14.6 5.8 48 20-71 63-111 (210)
152 PRK11179 DNA-binding transcrip 25.9 54 0.0014 14.6 6.6 85 113-210 54-140 (153)
153 pfam07478 Dala_Dala_lig_C D-al 25.9 26 0.00065 16.6 0.6 52 142-213 132-184 (201)
154 cd04876 ACT_RelA-SpoT ACT dom 25.1 55 0.0014 14.5 5.4 65 136-207 2-69 (71)
155 COG1454 EutG Alcohol dehydroge 25.0 56 0.0014 14.5 3.5 58 58-115 49-112 (377)
156 TIGR00432 arcsn_tRNA_tgt archa 24.8 52 0.0013 14.6 2.0 29 167-195 78-107 (658)
157 pfam01776 Ribosomal_L22e Ribos 24.6 57 0.0014 14.4 5.5 21 179-199 8-31 (112)
158 cd00951 KDGDH 5-dehydro-4-deox 24.6 57 0.0014 14.4 10.4 116 1-119 50-181 (289)
159 KOG0886 consensus 24.5 29 0.00074 16.2 0.7 57 132-199 70-128 (167)
160 pfam02410 DUF143 Domain of unk 24.3 57 0.0015 14.4 3.4 51 145-195 46-96 (99)
161 COG0274 DeoC Deoxyribose-phosp 23.7 27 0.00068 16.4 0.4 79 30-109 21-117 (228)
162 TIGR02529 EutJ ethanolamine ut 23.5 57 0.0014 14.4 2.0 18 14-31 103-120 (240)
163 TIGR01918 various_sel_PB selen 23.3 60 0.0015 14.2 2.2 25 63-88 363-387 (433)
164 pfam12007 DUF3501 Protein of u 23.1 60 0.0015 14.2 3.9 99 102-215 19-119 (191)
165 cd01981 Pchlide_reductase_B Pc 23.1 61 0.0015 14.2 2.3 71 89-160 192-266 (430)
166 cd07212 Pat_PNPLA9 Patatin-lik 22.9 61 0.0016 14.2 2.9 13 22-34 35-47 (312)
167 KOG0523 consensus 22.7 62 0.0016 14.2 4.5 31 55-87 158-189 (632)
168 pfam03862 SpoVA SpoVA protein. 22.0 64 0.0016 14.1 2.1 20 10-29 77-96 (119)
169 COG1782 Predicted metal-depend 21.6 65 0.0017 14.0 3.3 74 34-108 49-126 (637)
170 COG1181 DdlA D-alanine-D-alani 21.5 65 0.0017 14.0 2.6 56 142-216 244-300 (317)
171 PRK13368 3-deoxy-manno-octulos 21.4 66 0.0017 14.0 4.5 25 48-72 45-69 (238)
172 TIGR02546 III_secr_ATP type II 21.2 43 0.0011 15.1 1.1 46 29-74 191-236 (430)
173 PRK07079 hypothetical protein; 21.1 62 0.0016 14.2 1.8 18 181-198 329-346 (468)
174 PRK08811 uroporphyrinogen-III 20.8 67 0.0017 13.9 3.7 94 21-119 68-167 (264)
175 TIGR03675 arCOG00543 arCOG0178 20.6 68 0.0017 13.9 3.3 70 35-105 44-117 (630)
176 PRK06392 homoserine dehydrogen 20.5 66 0.0017 14.0 1.9 45 23-69 5-52 (326)
177 PRK05718 keto-hydroxyglutarate 20.3 69 0.0018 13.9 6.2 48 20-71 65-113 (212)
No 1
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=100.00 E-value=0 Score=624.49 Aligned_cols=220 Identities=49% Similarity=0.769 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC--CC-EEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 9999999999838997899887917899999999998732--87-04896188999999873157865510088007986
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN--GF-RVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSI 82 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~--~~-~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~i 82 (231)
+|+.||++|++||++||+||||||||++|||++||+|++. ++ ++.+||||.+|+.+|.++|||+.+++++++|||||
T Consensus 1 ~K~~a~~~A~~~V~~Gm~~GlGTGST~~~~i~~LG~~v~~Ge~l~~i~gVpTS~~t~~lA~~~GIpl~~l~~~~~lDltI 80 (236)
T TIGR00021 1 LKRAAAEAAAELVEDGMVVGLGTGSTVAYFIEALGERVKQGEGLDNIVGVPTSKQTAELARELGIPLSSLDEVPELDLTI 80 (236)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCCEEECCCCCCEEEEEE
T ss_conf 90689999998600897898245046899999999874367755643588483899999998298040225577200686
Q ss_pred CCHHCCC-CCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC----CCC-CCEEEEECCHHHHHH--HHHH-HH
Q ss_conf 3300047-6605883165777778799861022699962303513455----788-726787257589999--9986-32
Q gi|254781054|r 83 DGFDEID-SRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG----RGM-LPIEIDQFGVNKTLS--ALKE-VA 153 (231)
Q Consensus 83 DGaDevd-~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg----~~p-lPVEV~p~~~~~v~~--~l~~-~~ 153 (231)
||||||| +++|||||||||||||||||++|+|||||||+||+|++|| +|| |||||+||||.+|.+ .+++ .+
T Consensus 81 DGADEvdl~~l~lIKGGGgALlrEKIva~~s~~~ivIaDe~K~V~~LG~d~~~fppLPvEV~Pf~~~~~~~~l~~~~A~l 160 (236)
T TIGR00021 81 DGADEVDLPNLNLIKGGGGALLREKIVASASKRFIVIADESKLVDKLGGDQWKFPPLPVEVVPFAWKATARRLKLEKAVL 160 (236)
T ss_pred ECCCCCCCCCCCEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCHHCCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 06341030337643132067889999987528069997274240111772000686047880368078999899888765
Q ss_pred HHCC-CCCEEEEE-ECCCCCEECCCCCEEEEECCCC--CCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEE
Q ss_conf 2148-98503772-2588636257888899820798--689899999962799686648024767789997799849
Q gi|254781054|r 154 SCFG-LNEELRLR-RNGSGLFVSDGGNYIVDAFFGF--IPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGEC 226 (231)
Q Consensus 154 ~~~G-~~~~lR~~-~~~~gp~iTDnGN~IlD~~~~~--i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~ 226 (231)
..| +++++|++ .++++||+|||||||+||+|+. ++||.+++.+|++||||||||||.+|||.+|||++||+.
T Consensus 161 -l~Gl~~~~LR~~~v~~~~~~~TDNGN~IlD~~~~~~~i~dP~~l~~~l~~ipGVVE~GLF~~~Ad~vivG~~dG~~ 236 (236)
T TIGR00021 161 -LLGLGEPTLRKGKVNKGGPVVTDNGNYILDCHFGKEIIPDPEALEEELKSIPGVVEHGLFIDMADTVIVGTKDGVK 236 (236)
T ss_pred -HCCCCEEEEEECCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCCCC
T ss_conf -2377127895332279801796079789997769875789689999960799888503111770189984478899
No 2
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=0 Score=565.30 Aligned_cols=221 Identities=45% Similarity=0.691 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
|+|+++|++||++|++||++||+||||||||+++||++|++++++++++++||||.+|+.+|+++|||+.++++++++|+
T Consensus 1 m~~d~~K~~aA~~A~~~V~~gmviGLGtGSTv~~~i~~L~~~~~~g~~i~~V~tS~~T~~~a~~~Gi~l~~l~~~~~iDl 80 (222)
T PRK00702 1 MTQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGGIIGGVPTSEASTELAKELGIPVFDLNEVDSLDL 80 (222)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECCCCCCCCCE
T ss_conf 99899999999999974799999985837999999999999885479779977869999999987986865000785205
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86330004766058831657777787998610226999623035134557887267872575899999986322148985
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
|||||||||+++||||||||||+|||++|++|++||||+|+||+|++||+|||||||+||+|..+.+.|++ +|+++
T Consensus 81 aiDGADevd~~l~lIKGgGgallrEKivA~~a~~~i~I~D~sK~v~~Lg~~plPvEV~p~a~~~v~~~l~~----lg~~~ 156 (222)
T PRK00702 81 YVDGADEIDPHLNLIKGGGAALTREKIVAAAAKKFICIVDESKLVDVLGKFPLPVEVIPMARSAVARELEK----LGGQP 156 (222)
T ss_pred EECCHHHHCCCCCEEECCHHHHHHHHHHHHHHHCEEEEECCCCEECCCCCCCCCEEECCCHHHHHHHHHHH----CCCCC
T ss_conf 74365664667547852709999999999842208999643303132799884789871369999999998----59973
Q ss_pred EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEE
Q ss_conf 0377225886362578888998207986898999999627996866480247677899977998499
Q gi|254781054|r 161 ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECL 227 (231)
Q Consensus 161 ~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~ 227 (231)
.+|++ ++|||+|||||||+||+|++++||.+++.+|++||||||||||.++++.++||++||..+
T Consensus 157 ~lR~~--~~gp~vTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~GlF~~~~~~vii~~~~Gv~~ 221 (222)
T PRK00702 157 ELRMA--GDEPVVTDNGNYILDVHFLRIPDPEALEKELNNIPGVVENGLFANRADVVLVGTPDGVKV 221 (222)
T ss_pred CCCCC--CCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHCCCCEEEEECCCCEEE
T ss_conf 12657--899828528988999208997999999999857999981284338489999975992587
No 3
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=0 Score=559.05 Aligned_cols=224 Identities=36% Similarity=0.556 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 8789999999999983899789988791789999999999873-287048961889999998731578655100880079
Q gi|254781054|r 2 DALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
|++|+|++||++|++||++||+||||||||+++||++|+++++ +++++++||||.+|+.+|+++|||+.++++++++|+
T Consensus 3 ~~~~lK~~aa~~A~~~V~~gmviGLGTGSTv~~~I~~L~~~~k~~~l~i~~V~tS~~T~~~a~~~Gi~l~~l~~~~~iDl 82 (228)
T PRK13978 3 DVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDL 82 (228)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCE
T ss_conf 68999999999999658999999855579999999999999860798489997999999999987980764556873467
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 8633000476605883165777778799861022699962303513455-788726787257589999998632214898
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFGLN 159 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~p~~~~~v~~~l~~~~~~~G~~ 159 (231)
|||||||||+++||||||||||+|||++|++|++||||+|+||+|++|| +|||||||+||+|.++.+.++++ |..
T Consensus 83 ~iDGADEvd~~lnlIKGgGgal~rEKivA~~ak~~IiI~D~sK~v~~Lg~~~plPVEVvp~a~~~v~~~l~~~----~~~ 158 (228)
T PRK13978 83 AIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESY----ADI 158 (228)
T ss_pred EEECCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHC----CCC
T ss_conf 9808864178878898784999999999970384899983654345438838800899034899999999980----799
Q ss_pred CEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 503772258863625788889982079868989999996279968664802476778999779984999879
Q gi|254781054|r 160 EELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 160 ~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
+. +.+.++++||+|||||||+||+|+.+.||.+++.+|++||||||||||.++++.+++|++|| +++++|
T Consensus 159 ~~-~~r~~~~~p~vTDnGN~IlD~~f~~~~dp~~l~~~L~~ipGVVe~GlF~~~a~~vivg~~dG-v~vl~r 228 (228)
T PRK13978 159 KV-ERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEG-VKILEK 228 (228)
T ss_pred CE-EEEECCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCE-EEEECC
T ss_conf 54-76645999669319988999228998999999999877999981175268399999975990-599359
No 4
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=560.73 Aligned_cols=227 Identities=45% Similarity=0.709 Sum_probs=215.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
|+++++|+++|++|++||++||+||||||||++|||++|+++.+.++++.+||||.+|+.+|.++|||+.++++++++|+
T Consensus 1 ~~~~~~K~~aa~~A~~~v~~gmviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl 80 (227)
T COG0120 1 MDQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIPVSSLNEVDSLDL 80 (227)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEECCCCCCCCCCE
T ss_conf 96678999999999998249978997675789999999977740676379996979999999982976437333676665
Q ss_pred EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 86330004766058831657777787998610226999623035134557887267872575899999986322148985
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
|||||||||+++||||||||||+||||+|++|++|||||||||+|++||+|||||||+||+|.++.+++++ +|+++
T Consensus 81 ~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG~fplPVEVip~a~~~v~r~l~~----~g~~~ 156 (227)
T COG0120 81 AIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLGKFPLPVEVIPFARSAVLRKLEK----LGGKP 156 (227)
T ss_pred EEECCCCCCCCCCEECCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHCCCCCCCEEECHHHHHHHHHHHHH----HCCCC
T ss_conf 76464111888876703758988989999744718999967601533189986889823079999999998----08975
Q ss_pred EEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 03772258863625788889982079868989999996279968664802476778999779984999879
Q gi|254781054|r 161 ELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 161 ~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
.+|....+.|||+|||||||+|++|+.+.||.+|+.+|++||||||||||.++++.++++..+|.++++++
T Consensus 157 ~lR~~~~k~GpviTDnGN~IlDv~~~~i~dp~~le~~l~~IpGVVE~GlF~~~~~~~ii~g~~~~v~~~~~ 227 (227)
T COG0120 157 TLREGEGKDGPVITDNGNYILDVHFGRIEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227 (227)
T ss_pred CCCCCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCEEEECC
T ss_conf 12355567898895289889992079859989999998379888871520464144999917987798169
No 5
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=0 Score=527.59 Aligned_cols=212 Identities=48% Similarity=0.768 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
Q ss_conf 9999999999838997899887917899999999998732-870489618899999987315786551008800798633
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDG 84 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~-~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDG 84 (231)
+|+++|++|+++|++||+||||||||+.+|+++|++++++ ++++++||||.+|+.+|+++|||+.++++++++|+||||
T Consensus 1 ~K~~aA~~A~~~v~~g~viGLGtGsTv~~~i~~L~~~~~~~~~~i~~V~tS~~T~~~~~~~Gi~v~~~~~~~~iDi~iDG 80 (213)
T cd01398 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAIDG 80 (213)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEECHHHCCCEEEEECC
T ss_conf 96999999998668999998685599999999999877615886799809699999999879974275567830067537
Q ss_pred HHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 00047660588316577777879986102269996230351345578872678725758999999863221489850377
Q gi|254781054|r 85 FDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRL 164 (231)
Q Consensus 85 aDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~ 164 (231)
|||||+++||||||||||+|||++|++|++||+|+|+||+|++||+|||||||+||+|.++.+.|++ +|+++++|+
T Consensus 81 aDevd~~l~lIKGgGgal~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPiEV~p~a~~~v~~~l~~----lg~~~~lR~ 156 (213)
T cd01398 81 ADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGEFPLPVEVVPFAWSYVARELEK----LGGKPVLRE 156 (213)
T ss_pred HHHHCCCCCEEEECCHHHHHHHHHHHHHHEEEEEECCCCEECCCCCCCEEEEECCCHHHHHHHHHHH----CCCCEEEEE
T ss_conf 4664547668970828989899999742209999660116054799882599820279999999997----699759932
Q ss_pred EECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEEC
Q ss_conf 225886362578888998207986898999999627996866480247677899977
Q gi|254781054|r 165 RRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGT 221 (231)
Q Consensus 165 ~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~ 221 (231)
+.+++|||+|||||||+||+|+.+.||.+|+.+|++||||||||||.++++.+++|+
T Consensus 157 ~~~k~gp~iTDnGN~IlD~~~~~i~dp~~l~~~L~~i~GVVe~GlF~~~~~~viv~~ 213 (213)
T cd01398 157 GSGKGGPVVTDNGNYILDVHFGTIEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213 (213)
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECHHCCCCCEEEEEC
T ss_conf 688998548159988999128996899999999846999983470017488899819
No 6
>pfam06026 Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A). This family consists of several ribose 5-phosphate isomerase A or phosphoriboisomerase A (EC:5.3.1.6) from bacteria, eukaryotes and archaea.
Probab=100.00 E-value=0 Score=443.04 Aligned_cols=171 Identities=51% Similarity=0.795 Sum_probs=165.2
Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCC
Q ss_conf 48961889999998731578655100880079863300047660588316577777879986102269996230351345
Q gi|254781054|r 49 VQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFL 128 (231)
Q Consensus 49 i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~L 128 (231)
+++||||.+|+.+|+++|||+.++++++++|+|||||||||+++||||||||||+|||++|++|++||||+|+||+|++|
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~l~~~~~iDl~iDGADevd~~l~lIKGGGgallrEKivA~~a~~~I~i~DesK~v~~L 80 (172)
T pfam06026 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKKFIVIVDESKLVDVL 80 (172)
T ss_pred CEEECCCHHHHHHHHHCCCEEECCCCCCCCEEEECCHHHHCCCCCEEEECCHHHHHHHHHHHHHCCEEEEECCCEECCCC
T ss_conf 98968749999999986996865211784015635767748676889708189888999998630369990635074537
Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf 57887267872575899999986322148985037722588636257888899820798689899999962799686648
Q gi|254781054|r 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG 208 (231)
Q Consensus 129 g~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G 208 (231)
|+|||||||+||+|.+++++|++ +|+++++|++ ++|||+|||||||+||+|+++.||.+|+.+|++||||||||
T Consensus 81 g~~plPvEV~p~a~~~v~~~l~~----lG~~~~lR~~--~~gp~iTDnGN~IlD~~~~~i~dp~~l~~~L~~ipGVVe~G 154 (172)
T pfam06026 81 GKFPLPVEVVPFAWSYVLRRLEE----LGGEPKLRMG--EGGPVVTDNGNYILDVHFGRIEDPEELEKELKNIPGVVEHG 154 (172)
T ss_pred CCCCEEEEECHHHHHHHHHHHHH----CCCCCEECCC--CCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99875389815089999999998----1996166248--99860846999899902898699999999985799998348
Q ss_pred EECCCCCEEEEECCCCE
Q ss_conf 02476778999779984
Q gi|254781054|r 209 LFINMVDCAIIGTSDGE 225 (231)
Q Consensus 209 lF~~~~d~viv~~~dG~ 225 (231)
||.++++.+++|++||.
T Consensus 155 lF~~~a~~vivg~~~Gv 171 (172)
T pfam06026 155 LFLGMADKVIVGTKDGV 171 (172)
T ss_pred HHCCCCCEEEEECCCCC
T ss_conf 00073889999679866
No 7
>KOG3075 consensus
Probab=100.00 E-value=0 Score=424.78 Aligned_cols=227 Identities=40% Similarity=0.579 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHH-HCCCCCEEEECCCHHHHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 78999999999998-389978998879178999999999987328--704896188999999873157865510088007
Q gi|254781054|r 3 ALQMKRNAARRAIQ-YVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVD 79 (231)
Q Consensus 3 ~~~~K~~~a~~A~~-~v~~gmviGlGtGSTv~~~i~~L~~~~~~~--~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iD 79 (231)
++++|++||++|++ +++++|++||||||||.+.+++|++...++ .++.+||||.+|++++.++|||+.+++..+.+|
T Consensus 24 ~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~hp~iD 103 (261)
T KOG3075 24 QEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDSHPVID 103 (261)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 57789998761266642487289866860799999999988517886766864552566888986397334577786168
Q ss_pred EEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCC---CCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 986330004766058831657777787998610226999623035134557---88726787257589999998632214
Q gi|254781054|r 80 LSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGR---GMLPIEIDQFGVNKTLSALKEVASCF 156 (231)
Q Consensus 80 i~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~---~plPVEV~p~~~~~v~~~l~~~~~~~ 156 (231)
+|||||||||+++|+||||||+|++||+++.+|++||+|+|++|.++.||. +-+||||+|++|..+.+.+++ ..+
T Consensus 104 laidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~--~~~ 181 (261)
T KOG3075 104 LAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSE--FSF 181 (261)
T ss_pred EEECCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCEEEEEECCCCCHHHCCCCCCCEEEEEHHHHHHHHHHHHHH--HHC
T ss_conf 885480430767665873561253788999753125999500136511154554764155056689999875444--313
Q ss_pred CCCCEEE-EEECCCCCEECCCCCEEEEECC-CCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEEEEEC
Q ss_conf 8985037-7225886362578888998207-9868989999996279968664802476778999779984999879
Q gi|254781054|r 157 GLNEELR-LRRNGSGLFVSDGGNYIVDAFF-GFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231 (231)
Q Consensus 157 G~~~~lR-~~~~~~gp~iTDnGN~IlD~~~-~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~vl~k 231 (231)
|+.+.+| ...++.+|++|||||||+|++| .++.|+.++...++.+|||||||+|++++++++++.++|.+.+.+|
T Consensus 182 g~~~~lR~g~~~k~~P~VTDngN~IiDv~fe~~i~~~~~~~~~i~~~pGVVe~GLfi~~~~~v~ia~~~gsv~v~~~ 258 (261)
T KOG3075 182 GCEAKLRMGAEGKAGPYVTDNGNFIIDVQFETPIRDLNAASTSIKKIPGVVEHGLFIGMADTVIIAESDGSVSVTKK 258 (261)
T ss_pred CCHHEECCCCCCCCCCEEEECCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCCEEEC
T ss_conf 64100002666668975830887589999614567889999988616885355347402317999805883113535
No 8
>pfam00455 DeoR Bacterial regulatory proteins, deoR family.
Probab=99.08 E-value=2e-09 Score=79.34 Aligned_cols=117 Identities=23% Similarity=0.194 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCCCC----------
Q ss_conf 9999999999983899789988791789999999999873287048961889999998731-57865510----------
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHSPE---------- 73 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~l~---------- 73 (231)
+.|+..|++|+++|++|++|-|++|||+.+++++|.+ ..++++|+.|......+.+. ++.+.-+-
T Consensus 2 aeK~~Ia~~Aa~~I~~g~~Ifld~GTT~~~la~~L~~----~~~ltVvTnsl~ia~~L~~~~~~~v~llGG~~~~~~~~~ 77 (157)
T pfam00455 2 AEKRRIAKKAASLIEDGDTIFLDAGTTVEELARALLG----HINLTVITNSLPIANALSEKEHFRLILIGGEYRRKTGSF 77 (157)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCEE
T ss_conf 7899999999986899999999096899999999853----898799989899999998589967998689224788738
Q ss_pred -------C--CCEEEEEECCHHCCCCCCE-EEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf -------0--8800798633000476605-883165777778799861022699962303513
Q gi|254781054|r 74 -------D--VSSVDLSIDGFDEIDSRLR-LIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 74 -------~--~~~iDi~iDGaDevd~~l~-lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
. .=++|++|=|++-++++.. .--.-.-|.++..++ .+|++.++++|+||+-.
T Consensus 78 ~G~~a~~~l~~~~~D~afig~~gi~~~~G~~~~~~~~a~~k~~~~-~~s~~~ill~D~sKf~~ 139 (157)
T pfam00455 78 VGPLAESFLSKFRFDKAFFSADGIDLDGGLTTSNLLEASVKRAML-EVAREVILLADHSKFGK 139 (157)
T ss_pred ECHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHH-HCCCCEEEEECHHHCCC
T ss_conf 999999999812799999807626689975548999999999999-71898999980436297
No 9
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.01 E-value=4.2e-09 Score=77.35 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH-HCCCCCCCC----------
Q ss_conf 899999999999838997899887917899999999998732870489618899999987-315786551----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK-IHHIPLHSP---------- 72 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~-~~gi~~~~l---------- 72 (231)
.+.|+..|++|+++|++|++|-|++|||+.++.++|.+ ..++++|+.|......+. .-++.+.-+
T Consensus 75 ~~~K~~IA~~Aa~lI~~g~~I~lD~GTT~~~la~~L~~----~~~ltVvTnsl~ia~~L~~~~~~~vil~GG~~~~~~~~ 150 (252)
T PRK10906 75 TEEKERIARKVASQIPNGSTLFIDIGTTPEAVAHALLN----HSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGG 150 (252)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCC----CCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCC
T ss_conf 99999999999986899999998786379999853336----79869998989999999848996499858888578874
Q ss_pred -------C--CCCEEEEEECCHHCCCCCCEEEEC-CCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf -------0--088007986330004766058831-65777778799861022699962303513
Q gi|254781054|r 73 -------E--DVSSVDLSIDGFDEIDSRLRLIKG-YGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 73 -------~--~~~~iDi~iDGaDevd~~l~lIKG-gGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
+ ..=++|++|=||+-+|.+..+--- -.-|.+... +..+|++.|+++|+||+-.
T Consensus 151 ~~G~~a~~~l~~~~~d~afig~~gi~~~~g~t~~~~~ea~~kr~-mi~~a~~~illaDssKfg~ 213 (252)
T PRK10906 151 IIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRA-IIENSRHVMLVVDHSKFGR 213 (252)
T ss_pred EECHHHHHHHHHCCEEEEEEECCEECCCCCCCCCCHHHHHHHHH-HHHHCCCEEEEECCCCCCC
T ss_conf 30688999997066029996165126898733599999999999-9996196899987330388
No 10
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.00 E-value=4.6e-09 Score=77.15 Aligned_cols=117 Identities=24% Similarity=0.239 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCCC----------
Q ss_conf 89999999999983899789988791789999999999873287048961889999998731-5786551----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHSP---------- 72 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~l---------- 72 (231)
.+.|+..|++|+++|++|++|-|++|||+.++.++|.+ .++++|+.|......+.+. ++.++-+
T Consensus 77 ~~~K~~IA~~Aa~lI~~gd~I~lD~GTT~~~la~~L~~-----~~ltVvTNsl~ia~~L~~~~~~~vil~GG~~~~~~~s 151 (240)
T PRK10411 77 YAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPD-----IPIQVFTNSHPICQELGKRERIQLISSGGTLERKYGC 151 (240)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC-----CCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCE
T ss_conf 99999999999975899999999581999999998368-----9819998989999999728997899989999788882
Q ss_pred -------CC--CCEEEEEECCHHCCCCCCEEEECC-CHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf -------00--880079863300047660588316-5777778799861022699962303513
Q gi|254781054|r 73 -------ED--VSSVDLSIDGFDEIDSRLRLIKGY-GGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 73 -------~~--~~~iDi~iDGaDevd~~l~lIKGg-GgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
+. .-+.|.+|=||+-|++++.+---- --|.+... +..+|++.|+++|+||+-.
T Consensus 152 ~~G~~a~~~l~~~~~d~afig~~gi~~~~g~~~~~~~ea~~kr~-~i~~a~~~ill~D~SKf~~ 214 (240)
T PRK10411 152 YVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADFKSM-LLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred EECHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCHHHHHHHHH-HHHHHCCEEEEECCCCCCC
T ss_conf 78999999986538999998670437999876699999999999-9996298899998330388
No 11
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=98.98 E-value=5.5e-09 Score=76.63 Aligned_cols=117 Identities=24% Similarity=0.269 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCCCC-----------
Q ss_conf 8999999999998389978998879178999999999987328704896188999999873-1578655-----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI-HHIPLHS----------- 71 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~-~gi~~~~----------- 71 (231)
.+.|+..|++|+++|++|++|-|++|||+.++.++|.+ ..++++|+.|......+.. -++.++-
T Consensus 90 ~~~K~~IA~~Aa~lI~~gd~I~lD~GTT~~~la~~L~~----~~~ltVvTNsl~ia~~L~~~~~~~vil~GG~~~~~~~s 165 (269)
T PRK09802 90 TAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRK----HTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQS 165 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCC
T ss_conf 99999999999986899999997786799999973232----69859997879999999728996799748877067772
Q ss_pred ---------CCCCCEEEEEECCHHCCCCCCE-EEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf ---------1008800798633000476605-883165777778799861022699962303513
Q gi|254781054|r 72 ---------PEDVSSVDLSIDGFDEIDSRLR-LIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 72 ---------l~~~~~iDi~iDGaDevd~~l~-lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
+.. -+.|++|=||+-++.+.. .--.---|-+...+ ..+|++.|+++|+||+-.
T Consensus 166 ~~G~~a~~~l~~-~~~d~aFlg~~gi~~~~G~t~~~~~ea~~kr~~-i~~a~~~illaD~sKf~~ 228 (269)
T PRK09802 166 FYGDQAEQSLQN-YHFDMLFLGVDAIDLERGVSTHNEDEARLNRRM-CEVAERIIVVTDSSKFNR 228 (269)
T ss_pred EECHHHHHHHHH-CCCCEEEECCCEECCCCCCCCCCHHHHHHHHHH-HHHCCCEEEEECHHHCCC
T ss_conf 667899999983-668999984766558997573999999999999-995597999986325288
No 12
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=98.95 E-value=1.2e-08 Score=74.59 Aligned_cols=117 Identities=22% Similarity=0.173 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH--CCCCCCC----------
Q ss_conf 8999999999998389978998879178999999999987328704896188999999873--1578655----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI--HHIPLHS---------- 71 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~--~gi~~~~---------- 71 (231)
.+.|+..|++|+++|++|++|-|++|||+.++.++|.+ ..++++|+.|......+.+ ..+.++-
T Consensus 75 ~~~K~~IA~~Aa~lI~~g~~I~lD~GTT~~~la~~L~~----~~~ltVvTNsl~ia~~l~~~~~~~~v~l~GG~~~~~~~ 150 (256)
T PRK10434 75 THKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSR----FNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA 150 (256)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC----CCCCEEEECCHHHHHHHHHCCCCCEEEECCCEEECCCC
T ss_conf 99999999999986899999998497689999998433----69978998989999999846998679926967846877
Q ss_pred ----------CCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf ----------1008800798633000476605883165777778799861022699962303513
Q gi|254781054|r 72 ----------PEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 72 ----------l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
+.. -++|++|=||+-++.+.-+---.-.+-+. |.+..+|++.|+++|+||+-.
T Consensus 151 s~~G~~a~~~l~~-~~~d~aFig~~gi~~~~g~t~~~e~~~vk-~~m~~~s~~~illaDssKf~~ 213 (256)
T PRK10434 151 SFHGQLAENAFEH-FTFDKLFMGTDGIDLNAGVTTFNEVYTVS-KAMCNAAREVILMADSSKFGR 213 (256)
T ss_pred CCCCHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEECHHHCCC
T ss_conf 3205999999875-27878998446065788846731999999-999985698899986213287
No 13
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=98.87 E-value=1.8e-08 Score=73.38 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCCC----------
Q ss_conf 89999999999983899789988791789999999999873287048961889999998731-5786551----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHSP---------- 72 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~l---------- 72 (231)
.+.|+..|++|+++|++|++|-|++|||+.++.++|.. .++++|+.|......+... ++.+.-+
T Consensus 77 ~~~K~~IA~~Aa~lI~~g~~IflD~GtT~~~la~~L~~-----~~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~~~~~ 151 (251)
T PRK13509 77 HDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCG-----KPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSI 151 (251)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC-----CCCEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCE
T ss_conf 99999999999964899999998486899999998628-----9949996889999999838998699819878168767
Q ss_pred --------CCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf --------008800798633000476605883165777778799861022699962303513
Q gi|254781054|r 73 --------EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 73 --------~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
...-..|++|=||+-+++++-.--.--.|.+. |.++.+|++.|+++|+||+-.
T Consensus 152 ~~~~~~~~~~~~~~d~~f~~~~gi~~~G~~~~~~~~a~~k-~~~~~~a~~~ill~DssK~~~ 212 (251)
T PRK13509 152 TLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAE-QKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred EHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEECCCCCCC
T ss_conf 6128999998404679998156447998756889999999-999995697899987220287
No 14
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=98.87 E-value=2.4e-08 Score=72.71 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCC------------
Q ss_conf 9999999999983899789988791789999999999873287048961889999998731-578655------------
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHS------------ 71 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~------------ 71 (231)
+.|+..|++|+++|++|++|-|++|||+.+++++|. ....++++..|......+... ++.++-
T Consensus 77 ~eK~~IA~~Aa~lI~~g~~IflD~GTT~~~la~~L~----~~~~ltviTnsl~~~~~l~~~~~~~vil~GG~~~~~~~~~ 152 (252)
T PRK10681 77 EEKRRAAQLAATLVEPDQTVFFDCGTTTPWIIEAID----NELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIF 152 (252)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCEE
T ss_conf 999999999996489999999908689999999831----1388599964399999996389987998087785288468
Q ss_pred --------CCCCCEEEEEECCHHCCCCCCEE-EECCCHHHHHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf --------10088007986330004766058-8316577777879986102269996230351
Q gi|254781054|r 72 --------PEDVSSVDLSIDGFDEIDSRLRL-IKGYGGALLREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 72 --------l~~~~~iDi~iDGaDevd~~l~l-IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v 125 (231)
+.. =+.|++|=||+-++.+.-+ --.=.-|.+..+++ .+|++.|+++|+||+-
T Consensus 153 ~g~~~~~~l~~-~~~d~aFig~~gi~~~~G~t~~~~~ea~~k~~~i-~~a~~~illaD~sKf~ 213 (252)
T PRK10681 153 KPLDFQSTLNN-ICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAM-AMAQKHVLVVDHSKFG 213 (252)
T ss_pred ECHHHHHHHHH-HCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEECHHHCC
T ss_conf 66899999985-1488899807548378996559999999999999-9579699998732428
No 15
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.5e-07 Score=67.77 Aligned_cols=118 Identities=25% Similarity=0.211 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCC-----------
Q ss_conf 89999999999983899789988791789999999999873287048961889999998731-578655-----------
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHS----------- 71 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~----------- 71 (231)
.+.|+..|++|+.+|++|++|=|..|||+.+++++|.+ ..++++++.|......+... ++.++-
T Consensus 75 ~~eK~~IA~~Aa~lI~dg~~ifld~GTT~~~la~~L~~----~~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~~~~ 150 (253)
T COG1349 75 TEEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPD----DNNLTVITNSLNIAAALLEKPNIEVILLGGTVRKKSGS 150 (253)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCC----CCCEEEEECCHHHHHHHHCCCCCEEEEECEEEECCCCC
T ss_conf 89999999999951899999999086249999997176----88739997998999998628997599827198457772
Q ss_pred ---------CCCCCEEEEEECCHHCCCCCCEEEECC-CHHHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf ---------100880079863300047660588316-57777787998610226999623035134
Q gi|254781054|r 72 ---------PEDVSSVDLSIDGFDEIDSRLRLIKGY-GGALLREKIIAHAASRFIVIGDESKRVDF 127 (231)
Q Consensus 72 ---------l~~~~~iDi~iDGaDevd~~l~lIKGg-GgAl~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231)
++. =++|.+|=|++-+|++.-+--.- .-|.+. +.+..+|++.++++|+||+-..
T Consensus 151 ~~G~~a~~~l~~-~~~d~aFig~~gi~~~~g~~~~~~~ea~~k-~~~~~~a~~~~ll~D~SKfg~~ 214 (253)
T COG1349 151 FVGPLAEEFLRQ-FNFDKAFIGADGIDLEGGLTTFNEEEAEVK-RAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CCCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCHHHHHHH-HHHHHHCCCEEEEEECCCCCCE
T ss_conf 318868999972-777889995760168987466888899999-9999835757999713424770
No 16
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.0055 Score=39.38 Aligned_cols=119 Identities=26% Similarity=0.255 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHHCCCCCCCCCC-
Q ss_conf 8999999999998389978-99887917899999999998732870489618-------89999998731578655100-
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------SRNTENFCKIHHIPLHSPED- 74 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l~~- 74 (231)
++.++.+|..+.+++++|. ++-.+-.+||..|+...+++ +.+++++.+ ...+...+.++||+.+-+-+
T Consensus 103 ~~a~~~ia~~~a~~i~dg~vIlTh~~S~~v~~~l~~A~~~---~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 103 EKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADR---GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECH
T ss_conf 9988789999886245898799834718999999986641---8854999972788623799999999749955998515
Q ss_pred -----CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCC
Q ss_conf -----880079863300047660588316577777879986-10226999623035134
Q gi|254781054|r 75 -----VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDF 127 (231)
Q Consensus 75 -----~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~ 127 (231)
+.+.|..|=|||-|..|+.++-==|-.++- +.|. ...-|++.+..-|+++.
T Consensus 180 a~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA--~~A~e~~~Pf~v~aesyKf~p~ 236 (301)
T COG1184 180 AVGAFMSRVDKVLVGADAILANGALVNKIGTSPLA--LAARELRVPFYVVAESYKFVPK 236 (301)
T ss_pred HHHHHHHHCCEEEECCCCEECCCCEEECCCHHHHH--HHHHHHCCCEEEEEEEECCCCC
T ss_conf 88999974898998820121477378603369999--9999839988998543012235
No 17
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.39 E-value=0.0021 Score=41.94 Aligned_cols=116 Identities=18% Similarity=0.284 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH----H-HCCCEEEEEECHHHH---HHHHHHCCCCCCC-----
Q ss_conf 99999999999838997899887917899999999998----7-328704896188999---9998731578655-----
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADK----I-ANGFRVQVIPSSRNT---ENFCKIHHIPLHS----- 71 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~----~-~~~~~i~~v~tS~~t---~~~a~~~gi~~~~----- 71 (231)
..+.+.|.+|+..+++|++|-||.|= -.....++.+. . .+.--+.+=|.+... ..+...-+.++..
T Consensus 6 ~~~e~ia~r~A~el~dG~~VnlGIGl-Ptlvan~~~~~~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~~vt~~pg~~ 84 (225)
T COG2057 6 TEREMIAKRAARELKDGDYVNLGIGL-PTLVANYAPEGMNVLLQSENGLLGVGPAPLPGEEDADLINAGKQPVTALPGAS 84 (225)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCC-HHHHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHHCCCCEEEECCCCE
T ss_conf 06899999999864499889855783-17767535466625886476168726888888889613307896268637824
Q ss_pred ---------CCCCCEEEEEECCHHCCCCCCE---------EEECCCHHHHHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf ---------1008800798633000476605---------88316577777879986102269996230351
Q gi|254781054|r 72 ---------PEDVSSVDLSIDGFDEIDSRLR---------LIKGYGGALLREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 72 ---------l~~~~~iDi~iDGaDevd~~l~---------lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v 125 (231)
+-.-.++|++|=||=|||..+| +++|.|||+- ++..|++.||+..++|..
T Consensus 85 ~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmd----l~~gakkvii~m~H~~k~ 152 (225)
T COG2057 85 VFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMD----LVTGAKKVIVVMEHTKKS 152 (225)
T ss_pred EECHHHHHHHHHCCCEEEEEECCEEECCCCCEEEEEECCCCCCCCCCCHH----HHCCCCEEEEEEEEECCC
T ss_conf 87538889998489667998431004655763002487710567766103----550771799985410346
No 18
>pfam01008 IF-2B Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Probab=97.21 E-value=0.016 Score=36.43 Aligned_cols=129 Identities=23% Similarity=0.184 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEE--C-----HHHHHHHHHHCCCCCCCCCC-
Q ss_conf 8999999999998389978-9988791789999999999873287048961--8-----89999998731578655100-
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIP--S-----SRNTENFCKIHHIPLHSPED- 74 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~--t-----S~~t~~~a~~~gi~~~~l~~- 74 (231)
.+..+..+..|.++|++|+ ++=.|--+||..++....+ .+.+..++. | +..|...+.+.|||+.-..+
T Consensus 91 ~~a~~~Ia~~a~~~I~~g~~ILT~~~S~tv~~~l~~A~~---~gk~f~V~v~EsrP~~~G~~~a~~L~~~gI~~t~i~ds 167 (281)
T pfam01008 91 EEARRKIGAIAAELIKDGDTILTHCNSGTVLGVLRAAHK---EGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDS 167 (281)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHH
T ss_conf 999999999999774899889975682899999999998---59907999966897401389999998579996896053
Q ss_pred -----CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEE
Q ss_conf -----88007986330004766058831657777787998-61022699962303513455-78872678
Q gi|254781054|r 75 -----VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEI 137 (231)
Q Consensus 75 -----~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV 137 (231)
..++|..+=|||-|..|+.++---|...+- ++| ....-|++.+..+|+.+..- ....++|-
T Consensus 168 a~~~~m~~vd~VivGAd~v~~nG~v~nk~GT~~iA--~~Ak~~~vPv~V~a~~~Kf~~~~~~~~~~~~e~ 235 (281)
T pfam01008 168 AVGYVMQEVDKVIVGADRILANGGIANKIGTYQLA--LLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEE 235 (281)
T ss_pred HHHHHHHHCCEEEECHHHHCCCCCEEECHHHHHHH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89998501888997554413799874412029999--998644997899866677587678877465766
No 19
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=97.13 E-value=0.025 Score=35.30 Aligned_cols=128 Identities=19% Similarity=0.177 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHHCCCCCCCCCCC-
Q ss_conf 9999999999983899789-9887917899999999998732870489618-------899999987315786551008-
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPS-------SRNTENFCKIHHIPLHSPEDV- 75 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l~~~- 75 (231)
+..+..++.+.++|++|.+ +=.+-.+|+.-++....+ .|.+.+++.+ ...|...+.+.|||+.-..+.
T Consensus 105 ~a~~~i~~~g~~~I~~g~~ILThc~sg~~l~~i~~a~~---~g~~~~V~v~EtRP~~qGrlta~eL~~~GI~~tlI~Dsa 181 (316)
T PRK08535 105 KALERIGEIGARRIKDGDVIMTHCNSSAALSVIKTAHE---QGKDIEVIATETRPRNQGHITAKELNEAGIPVTLIVDSA 181 (316)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 99999999999866799879970685799999999998---799369999569954769999999997699769980426
Q ss_pred -----CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHH-HHHHCCEEEEEEHHHCCCCCC-CCCCCEEE
Q ss_conf -----800798633000476605883165777778799-861022699962303513455-78872678
Q gi|254781054|r 76 -----SSVDLSIDGFDEIDSRLRLIKGYGGALLREKII-AHAASRFIVIGDESKRVDFLG-RGMLPIEI 137 (231)
Q Consensus 76 -----~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiv-a~~a~~~I~i~D~sK~v~~Lg-~~plPVEV 137 (231)
.++|..|=|||-|..|+..+-==|-..+- +. -...--|++.+..+|+.+... ...+|+|-
T Consensus 182 ~~~~m~~vd~VivGAd~i~~nG~v~NKiGTy~~A--l~A~~~~vPfyV~a~t~k~~~~~~~g~~i~iE~ 248 (316)
T PRK08535 182 VRYYMKDVDKVVVGADAITANGAVINKIGTSQIA--LAAHEARVPFMVAAETYKFSPKTLLGELVEIEE 248 (316)
T ss_pred HHHHHHCCCEEEEEEEEEECCCCEEECCCHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 8999630887987012897699778755538889--999974988899922566676778998010656
No 20
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=96.58 E-value=0.073 Score=32.39 Aligned_cols=129 Identities=20% Similarity=0.169 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8999999999998389978998-87917899999999998732870489618-------899999987315786551008
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGMTLG-MGTGSTAKEFMILLADKIANGFRVQVIPS-------SRNTENFCKIHHIPLHSPEDV 75 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gmviG-lGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l~~~ 75 (231)
++.++..++.+.+++++|.+|= ..-++|+.-.+.... +.|.++.++.+ ..++...+.+.|||+.-+.+.
T Consensus 93 ~ea~~~ig~~G~~li~dg~~ILTH~~s~all~vi~~A~---~~g~~~~V~v~ETRP~~qG~~la~eL~~~gI~~tlI~Ds 169 (276)
T PRK08335 93 EEAKREIASIGAQLIDDGDVIITHSFSSAVLEIFKTAK---RRGKSFKVILTESAPDYEGLALANELEALGIEFEVITDA 169 (276)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH---HCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 99999999988876579987998567389999999999---879920799965995278999999999669983896021
Q ss_pred ------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCCCCCCCEEE
Q ss_conf ------8007986330004766058831657777787998-6102269996230351345578872678
Q gi|254781054|r 76 ------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLGRGMLPIEI 137 (231)
Q Consensus 76 ------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg~~plPVEV 137 (231)
.+.|+.|=|||-|..|+..+-==|-..+- ++| +...-|++.++.+|+...+....+|+|-
T Consensus 170 a~~~~m~~~d~vivGAD~i~~nG~v~NKiGT~~lA--l~Ak~~~iPfyVaa~s~k~d~~~~~~~~~i~e 236 (276)
T PRK08335 170 QMGLFCKKATLAIVGADNVTRDGAVVNKAGTYLLA--LACHENGVPFYVAAETYKFHPELNSGEVELVE 236 (276)
T ss_pred HHHHHHHCCCEEEECCCEEECCCCEEEHHHHHHHH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 69999644999998750673488665354359999--99998399889977654336777899856457
No 21
>KOG1466 consensus
Probab=96.35 E-value=0.081 Score=32.11 Aligned_cols=132 Identities=21% Similarity=0.240 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHHCCCCCCCC-CC--
Q ss_conf 99999999999838997899887917899999999998732870489618-------899999987315786551-00--
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------SRNTENFCKIHHIPLHSP-ED-- 74 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l-~~-- 74 (231)
..++..|.-+.++|.+|++|=.-+=|-|.+ +.|-.-.+.+.+..++.| ...-...++++|||+.-. +.
T Consensus 115 ~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl--~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDSaV 192 (313)
T KOG1466 115 KSRQKIAMLAQDFITDGCTILTHGYSRVVL--EVLLTAAQNKKRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDSAV 192 (313)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCHHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 889999997216762787898701559999--999999862856999994588897456999999866998699863167
Q ss_pred ---CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCC-EEEEEEHHHCCC--CCCCCCCCEEEEEC
Q ss_conf ---8800798633000476605883165777778799861022-699962303513--45578872678725
Q gi|254781054|r 75 ---VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASR-FIVIGDESKRVD--FLGRGMLPIEIDQF 140 (231)
Q Consensus 75 ---~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~-~I~i~D~sK~v~--~Lg~~plPVEV~p~ 140 (231)
.+++|+.+=||+-|-.++-.|--=|---. -++|..+++ |.+++.+.|+|. .|...-+|-+--||
T Consensus 193 gyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~--~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~~~~p~ 262 (313)
T KOG1466 193 GYVMERVDLVLVGAEGVVESGGIINKIGTYQV--AVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPPALPPF 262 (313)
T ss_pred HHHHHHCCEEEECCCEEEECCCEEEECCCCHH--HHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCC
T ss_conf 88875421799735103405765530032213--45477528986998531000012567612166656874
No 22
>pfam04198 Sugar-bind Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.
Probab=95.87 E-value=0.019 Score=35.95 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC------------HHHHHHHHHHCCC
Q ss_conf 8999999999998----38997899887917899999999998732870489618------------8999999873157
Q gi|254781054|r 4 LQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS------------SRNTENFCKIHHI 67 (231)
Q Consensus 4 ~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t------------S~~t~~~a~~~gi 67 (231)
++..+.+++.|++ +++++++||+|.|+|+..+++.+... ...++++||. ..-+..+|+++|=
T Consensus 32 ~~~~~~vg~~aA~~L~~~l~~~~~igvswG~Tl~~~~~~l~~~--~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~~~ 109 (255)
T pfam04198 32 PDTLEALGRAAAQYLSSLLKDGDVVGVGWGRTLSAVAEALTPK--SLRDVKFVPLIGGLGRDGSAHSNTVVARLAQKFGG 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCC--CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 6899999999999999857789889973568999999956977--88997899788989988784899999999999699
Q ss_pred CCCCCCCCCEEEEEECCHHC
Q ss_conf 86551008800798633000
Q gi|254781054|r 68 PLHSPEDVSSVDLSIDGFDE 87 (231)
Q Consensus 68 ~~~~l~~~~~iDi~iDGaDe 87 (231)
+...+ ....++|...+
T Consensus 110 ~~~~l----~aP~~~~s~~~ 125 (255)
T pfam04198 110 EYYLL----PAPAYASSAAL 125 (255)
T ss_pred EEEEE----ECCCCCCCHHH
T ss_conf 78997----06802699999
No 23
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.26 E-value=0.042 Score=33.88 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHH----HHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-------------HHHHHHHHHHCC
Q ss_conf 899999999999----838997899887917899999999998732870489618-------------899999987315
Q gi|254781054|r 4 LQMKRNAARRAI----QYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-------------SRNTENFCKIHH 66 (231)
Q Consensus 4 ~~~K~~~a~~A~----~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-------------S~~t~~~a~~~g 66 (231)
...++..++.|. +.+++|++||+|.|+|+..+++.+.... ..++++||. -.-+...|.+.+
T Consensus 94 ~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~~ 171 (321)
T COG2390 94 DSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTGGVGHADGSYNANTIALRLAEKLG 171 (321)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCC--CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 58999999999999998577999999925579999998559676--6883899888988877666678799999999849
Q ss_pred CCC
Q ss_conf 786
Q gi|254781054|r 67 IPL 69 (231)
Q Consensus 67 i~~ 69 (231)
=+.
T Consensus 172 ~~~ 174 (321)
T COG2390 172 AES 174 (321)
T ss_pred CCE
T ss_conf 917
No 24
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit; InterPro: IPR012791 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the B subunit of family I CoA-transferases, which contains the conserved active-site glutamate residue. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is a mixed beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=94.62 E-value=0.067 Score=32.61 Aligned_cols=115 Identities=24% Similarity=0.333 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCC--HHHHHHHHHHHHHHHCCCEEEE-----------EEC-HHHHHHHHHHCCCCCCCC
Q ss_conf 99999999983899789988791--7899999999998732870489-----------618-899999987315786551
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGTG--STAKEFMILLADKIANGFRVQV-----------IPS-SRNTENFCKIHHIPLHSP 72 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlGtG--STv~~~i~~L~~~~~~~~~i~~-----------v~t-S~~t~~~a~~~gi~~~~l 72 (231)
+++.|++|+..++||+.|=||=| +=|. .||.+ +.++.. .|+ +..=..+...-+.|++-+
T Consensus 3 r~~iA~R~A~EL~dG~yVNLGIG~PtlVa---ny~Pe----g~~v~LqSENGilG~GP~P~~G~~D~dliNAGK~~vT~~ 75 (208)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIGIPTLVA---NYLPE----GIEVILQSENGILGMGPAPEEGEEDPDLINAGKQPVTLL 75 (208)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCHHCCC---CCCCC----CCEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCEEEEE
T ss_conf 68899999753789889967877300166---65488----874887602451168875678877845553078757654
Q ss_pred ------C--------CCCEEEEEECCHHCCCCCCE----------EEECCCHHHHHHHHHHHHHCCEEEEEEH------H
Q ss_conf ------0--------08800798633000476605----------8831657777787998610226999623------0
Q gi|254781054|r 73 ------E--------DVSSVDLSIDGFDEIDSRLR----------LIKGYGGALLREKIIAHAASRFIVIGDE------S 122 (231)
Q Consensus 73 ------~--------~~~~iDi~iDGaDevd~~l~----------lIKGgGgAl~rEKiva~~a~~~I~i~D~------s 122 (231)
+ --.++|++|=||=|||.++| ++||=|||+= |+.=|||.|++.++ |
T Consensus 76 pGAS~FdSA~SFamIRGGh~D~~VLGalQVs~~GdLANW~iPG~K~V~GmGGAMD----Lv~GAkrViV~M~H~~K~G~s 151 (208)
T TIGR02428 76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIPGQKLVPGMGGAMD----LVAGAKRVIVAMEHTTKDGES 151 (208)
T ss_pred CCCCCCCHHHHHHHHHCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCHHH----HCCCCCEEEEEECCCCCCCCC
T ss_conf 3886015245565540671203220301100146723142678877653455101----201482789970267888883
Q ss_pred HCCCCCCCCCC
Q ss_conf 35134557887
Q gi|254781054|r 123 KRVDFLGRGML 133 (231)
Q Consensus 123 K~v~~Lg~~pl 133 (231)
|+|+.+ ++||
T Consensus 152 Kil~~C-tLPL 161 (208)
T TIGR02428 152 KILKEC-TLPL 161 (208)
T ss_pred CCCCCC-CCCC
T ss_conf 331235-7852
No 25
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins modeled by this HMM, possibly erroneously.
Probab=94.41 E-value=0.4 Score=27.77 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEC--CC-HHHHHHHHHHHHHHHCCC------EEEEEE---CHH------------------
Q ss_conf 999999999838997899887--91-789999999999873287------048961---889------------------
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMG--TG-STAKEFMILLADKIANGF------RVQVIP---SSR------------------ 56 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlG--tG-STv~~~i~~L~~~~~~~~------~i~~v~---tS~------------------ 56 (231)
|...|++|+..|++|+.|++| || .+-..+.++|++|..+.. .++... ++.
T Consensus 1 Kl~taeeAv~~IksGd~V~~~Gf~~ag~P~~l~~ALa~r~~el~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~r~~f 80 (485)
T TIGR03458 1 KVMSADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPY 80 (485)
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEECCC
T ss_conf 93048999973899899997898888883789999999999854478765999992454575323402324762574354
Q ss_pred ---HHHHHHHHCCC-CCCC--CCC---------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf ---99999873157-8655--100---------88007986330004766058831657777787998610226999623
Q gi|254781054|r 57 ---NTENFCKIHHI-PLHS--PED---------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 57 ---~t~~~a~~~gi-~~~~--l~~---------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
.+...+...|. ..++ +++ ...+|+++=-+-..|.++++.=|-..-..+ -.+..|++.|.-+.+
T Consensus 81 ~~~~~~Rk~i~~G~~dy~P~~lse~p~~~~~g~~~~iDVa~iqvSp~D~~G~~slg~sv~~~~--~~~~~Ak~VI~EVN~ 158 (485)
T TIGR03458 81 QSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNP--TFLELADKVIVEVNT 158 (485)
T ss_pred CCCHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEECCCHHHHH--HHHHHCCEEEEEECC
T ss_conf 479889999977985788641555099997498789828999944778996287144141399--999854979999689
No 26
>pfam02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain. This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 utilizes acyl-CoA and acetate to form acetyl-CoA.
Probab=93.99 E-value=0.043 Score=33.82 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEC--CC-HHHHHHHHHHHHHHHCCC--------EEEEEEC-HH----------------
Q ss_conf 99999999999838997899887--91-789999999999873287--------0489618-89----------------
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLGMG--TG-STAKEFMILLADKIANGF--------RVQVIPS-SR---------------- 56 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviGlG--tG-STv~~~i~~L~~~~~~~~--------~i~~v~t-S~---------------- 56 (231)
+.|...|++|+.+|++||.|+.| |+ ++-..+.++|+++..+.. ++....+ |.
T Consensus 6 ~~Kl~taeeA~~~IksGd~V~~~gf~~ag~p~~~~~ALa~r~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 85 (198)
T pfam02550 6 ERKLISPEEAASLVEIGMHIERGGFTFAGTAKAIPKYLAKRKVELVNAKVKTFIDLAVGAFLSAGPEAEVTDWKDAFLYR 85 (198)
T ss_pred HHCCCCHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCHHC
T ss_conf 64289999999738997999865876777878899999998998755565515767863441468620466576341110
Q ss_pred ----H---HHHHHHHCCC-CCCC--CCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEE
Q ss_conf ----9---9999873157-8655--1008--------8007986330004766058831657777787998610226999
Q gi|254781054|r 57 ----N---TENFCKIHHI-PLHS--PEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118 (231)
Q Consensus 57 ----~---t~~~a~~~gi-~~~~--l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i 118 (231)
. +...+...|. ..++ ++++ -.+|+++=-+=..|.++++.=|-+- -..|.++..|+..|+-
T Consensus 86 ~~~~f~~~~~Rk~in~G~~~y~p~~ls~vp~~~~~g~~~iDvaii~vSp~D~~G~~slg~sv--~~~~~~ie~A~~vI~e 163 (198)
T pfam02550 86 PAPKQSGELGRKAINQGLASFVDKHLSEVPQLFEYGFVPIDVALIETTAMDDHGYFNFGVGC--DIVKVIIEVAELVDIV 163 (198)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECHHH--HHHHHHHHHCCEEEEE
T ss_conf 16300584378898679952026358773999976998887899994158998159743688--7699999878928999
Q ss_pred EEHHHCCCC
Q ss_conf 623035134
Q gi|254781054|r 119 GDESKRVDF 127 (231)
Q Consensus 119 ~D~sK~v~~ 127 (231)
+ .+..++
T Consensus 164 V--N~~~Pr 170 (198)
T pfam02550 164 M--PSNPPR 170 (198)
T ss_pred E--CCCCCC
T ss_conf 7--899998
No 27
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=93.07 E-value=0.67 Score=26.39 Aligned_cols=121 Identities=23% Similarity=0.242 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECH-------HHHHHHHHHCCCCCCCCCC----
Q ss_conf 99999999998389978998879178999999999987328704896188-------9999998731578655100----
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSS-------RNTENFCKIHHIPLHSPED---- 74 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS-------~~t~~~a~~~gi~~~~l~~---- 74 (231)
..++..+--...||||.+|=----|.+..- -+..-..+|+++.+++|- +-|...+.++||.++-+=|
T Consensus 102 A~~~IG~~G~~RIKDG~T~lTHCNS~AA~S--VIK~A~~~GK~~~V~~TE~RPR~QG~LT~K~L~~~GI~VTLIVDSAVR 179 (303)
T TIGR00511 102 AIRKIGKIGEKRIKDGDTVLTHCNSEAALS--VIKKAYDEGKDVKVIATESRPRNQGYLTVKTLRDAGIDVTLIVDSAVR 179 (303)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHHH--HHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEECHHE
T ss_conf 998864421121247871553005067999--998775368748999706898634025466786659448998501010
Q ss_pred --CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCC-EEEEEEHHHCCC-CC-CC
Q ss_conf --8800798633000476605883165777778799861022-699962303513-45-57
Q gi|254781054|r 75 --VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASR-FIVIGDESKRVD-FL-GR 130 (231)
Q Consensus 75 --~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~-~I~i~D~sK~v~-~L-g~ 130 (231)
...+|+.+=|||-|+.|+.||-==|-.-.- ++|.-|+- |.+-+.--|+.+ +| |.
T Consensus 180 YFI~E~D~VVVGAD~ITANG~L~NKIGTSQIA--L~A~E~RVPFl~AAETYKF~PKT~~GE 238 (303)
T TIGR00511 180 YFIKEVDIVVVGADAITANGALVNKIGTSQIA--LIAKEARVPFLVAAETYKFSPKTLVGE 238 (303)
T ss_pred EEEEEEEEEEECCCCHHHCCCEEECCCHHHHH--HHHHCCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 01125658998785011254100000056899--976116874101101014688505643
No 28
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=92.88 E-value=0.87 Score=25.70 Aligned_cols=116 Identities=17% Similarity=0.068 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEE-----ECHHHHHHHHHHCCCCCCCCCCC-----
Q ss_conf 99999999998389978998879178999999999987328704896-----18899999987315786551008-----
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVI-----PSSRNTENFCKIHHIPLHSPEDV----- 75 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v-----~tS~~t~~~a~~~gi~~~~l~~~----- 75 (231)
.-+.|-++|.+.+-+.-+.-+-++.|++.|++... ...++.+- -....++..+.+.|||+.-+.+.
T Consensus 73 ~~~~av~~~~~l~~~~~~~t~s~s~~~~~~~~~~~----k~~~V~vtESRP~~qG~~~A~~L~~~gI~vtlI~Dsav~~~ 148 (253)
T PRK06372 73 HEKMAIEHAKPLFNDSVIGTISSSQVLKAFISSSE----KIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEA 148 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC----CCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 79999998886416746999716369999998468----98759995789705689999999976997899801699999
Q ss_pred -CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCC
Q ss_conf -8007986330004766058831657777787998-610226999623035134
Q gi|254781054|r 76 -SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDF 127 (231)
Q Consensus 76 -~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~ 127 (231)
.++|..+=|||-|-.|+..+-==|-.++= ++| ....-|.+++...|+.+.
T Consensus 149 m~~VD~VIVGADrI~aNG~V~NKIGTy~lA--laAk~~~vPFYV~a~s~Kf~~~ 200 (253)
T PRK06372 149 VLNVDAVIVGSDSVLYDGGLIHKNGTFPLA--LCARYLKKPFYSLTISMKIERN 200 (253)
T ss_pred HHHCCEEEECCCEEECCCCEEEHHHHHHHH--HHHHHHCCCEEEEECCCCCCCC
T ss_conf 974999998964785379887544129999--9999829998997040023567
No 29
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=92.43 E-value=0.37 Score=27.97 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=75.9
Q ss_pred HHH-HHHHHHHHCCCCCEEEEC-C-CHHHHHHHHHHHHHHHCC------CEEEE---EECHHHHHHHHHHCC--------
Q ss_conf 999-999999838997899887-9-178999999999987328------70489---618899999987315--------
Q gi|254781054|r 7 KRN-AARRAIQYVVDGMTLGMG-T-GSTAKEFMILLADKIANG------FRVQV---IPSSRNTENFCKIHH-------- 66 (231)
Q Consensus 7 K~~-~a~~A~~~v~~gmviGlG-t-GSTv~~~i~~L~~~~~~~------~~i~~---v~tS~~t~~~a~~~g-------- 66 (231)
|++ -+.+|+.+|++||.||.+ | +.+...+.++|++|.++. +.+.. .+.+.++.....+.|
T Consensus 14 k~~~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~~~~a~~~~~r~p~ 93 (501)
T COG0427 14 KKLITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLKLAEAGEVIRRAPY 93 (501)
T ss_pred HHCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCHHHHCCC
T ss_conf 01689999998604888775304677872445899999987413345765899994265685145444225425441842
Q ss_pred --------------CCCCC-----------CCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf --------------78655-----------10088007986330004766058831657777787998610226999623
Q gi|254781054|r 67 --------------IPLHS-----------PEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 67 --------------i~~~~-----------l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
..-.+ -.....+|++++-+--+|+++..+=|=+=-+..+ .+..|+++|+-+-.
T Consensus 94 q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g~svg~~~~--~~~~A~kVIveVN~ 171 (501)
T COG0427 94 QVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPGTSVGNSKS--WAEGAEKVIVEVNK 171 (501)
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCHH--HHHHCCEEEEEHHC
T ss_conf 1377899988615754125467655676505656887679998203468850750566677588--87314579997420
No 30
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=91.14 E-value=0.32 Score=28.42 Aligned_cols=28 Identities=46% Similarity=0.781 Sum_probs=24.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 9978998879178999999999987328
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANG 46 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~ 46 (231)
++..++||.||||-..+-++|.++.+++
T Consensus 19 K~~~vLGLatGSTP~~~Y~~Li~~~~~~ 46 (169)
T cd00458 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRG 46 (169)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 7784999579988799999999997447
No 31
>pfam01144 CoA_trans Coenzyme A transferase.
Probab=86.27 E-value=2 Score=23.42 Aligned_cols=41 Identities=29% Similarity=0.440 Sum_probs=26.6
Q ss_pred HHHHHHHH-HHHCCCCCEEEEC----CCHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999-9838997899887----917899999999998732870
Q gi|254781054|r 7 KRNAARRA-IQYVVDGMTLGMG----TGSTAKEFMILLADKIANGFR 48 (231)
Q Consensus 7 K~~~a~~A-~~~v~~gmviGlG----tGSTv~~~i~~L~~~~~~~~~ 48 (231)
|+..+.+| ..+|+|||+|.+| +| .-..++.+|.++-...+.
T Consensus 1 k~~s~aeava~~ikdG~tv~~gGf~~~g-~P~al~~~l~r~~~~~lt 46 (217)
T pfam01144 1 KRESAAEAVAREIKDGMTVNVGGFGLIG-IPETLIAALARLGVKDLT 46 (217)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCC-CHHHHHHHHHHCCCCCEE
T ss_conf 9276999997239599999989977540-889999999860999759
No 32
>PRK06239 consensus
Probab=84.85 E-value=3.5 Score=21.92 Aligned_cols=118 Identities=16% Similarity=0.065 Sum_probs=68.8
Q ss_pred HHHHHHHHHCCCCC---EEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCCCCCCCCC---
Q ss_conf 99999998389978---99887917899999999998732870489618--------89999998731578655100---
Q gi|254781054|r 9 NAARRAIQYVVDGM---TLGMGTGSTAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHIPLHSPED--- 74 (231)
Q Consensus 9 ~~a~~A~~~v~~gm---viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi~~~~l~~--- 74 (231)
..++..++.+.++. +...|+|++ -..+.... +.|+.+.++++ |.-|+.++.+.|||+.-+.+
T Consensus 148 ~~g~~~~~l~~~~~~ILTHC~G~~~a-~gvir~a~---~~g~~~~V~~dETRP~lQGARLTa~EL~~~gIp~tLI~Dnma 223 (336)
T PRK06239 148 AVAKYLVDLFPDKGNILTQCFGETIV-GMMLREAK---NQNKNIKLFCPETRPYLQGARLTASVAYDQGFDTTVITDNMP 223 (336)
T ss_pred HHHHHHHHHCCCCCEEEEECHHHHHH-HHHHHHHH---HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 99998997358999695566147779-99999999---869926999757851334544559999867985599936679
Q ss_pred -----CCEEEEEECCHHCCCCCCEEE-ECCCHHHHHHHHHHHHHCC----EEEEEEHHHCCCCCCCCCCCEEEE
Q ss_conf -----880079863300047660588-3165777778799861022----699962303513455788726787
Q gi|254781054|r 75 -----VSSVDLSIDGFDEIDSRLRLI-KGYGGALLREKIIAHAASR----FIVIGDESKRVDFLGRGMLPIEID 138 (231)
Q Consensus 75 -----~~~iDi~iDGaDevd~~l~lI-KGgGgAl~rEKiva~~a~~----~I~i~D~sK~v~~Lg~~plPVEV~ 138 (231)
...+|..|=|||-|..|+... |=|= . .+|-.|+. |.+.+-.. .+.-.-.-+|||-=
T Consensus 224 g~lM~~g~Id~vIVGADRIa~NGDvANKIGT----Y--~lAvlAk~h~IPFyV~at~D--~~~~~G~~IpIEeR 289 (336)
T PRK06239 224 AFTMKNKNIDVFTSAADVICLDGHIVNKIGT----L--QIAIVAKYFGIPYFVTGIPD--KDKVSIKQVEIEER 289 (336)
T ss_pred HHHHHCCCCCEEEECCCEEECCCCEEHHHHH----H--HHHHHHHHCCCCEEEEECCC--CCCCCCCEEEEECC
T ss_conf 9998669999899624144416846304427----9--99999998199779983476--66898775677535
No 33
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=82.81 E-value=1.6 Score=23.98 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCEEEECCC---HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999999983899789988791---78999999999987328704896
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGTG---STAKEFMILLADKIANGFRVQVI 52 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlGtG---STv~~~i~~L~~~~~~~~~i~~v 52 (231)
|..-++.|+++|+||++|.+|.. .+-..++++|.++-. .+++.+
T Consensus 4 Ki~s~~eAv~~IkDG~tI~vgGf~~~g~P~~li~al~~~g~--kdLtli 50 (220)
T PRK09920 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGV--RDLTLI 50 (220)
T ss_pred CEEEHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEE
T ss_conf 35229999942999799998985773789999999997299--876787
No 34
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=82.44 E-value=4.4 Score=21.31 Aligned_cols=128 Identities=23% Similarity=0.131 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEE-E-CCC-------HHHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf 999999999998389978998-8-791-------7899999999998732870489618--------8999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTLG-M-GTG-------STAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmviG-l-GtG-------STv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi 67 (231)
+.-+..++..++++++|..|= - -|| .|+--.|....+ .|+.+.++.+ +.-|+.++.+.||
T Consensus 132 ~~~~~iG~~Ga~li~dg~~ILTHCNaG~LAT~g~GTAlgvIr~a~~---~gk~~~V~~~ETRP~lQGaRLTa~EL~~~gI 208 (339)
T PRK06036 132 ETNKLIGKYGAKLLKDGDTVLTHCNAGRLACVDWGTALGVVRSAVE---DGKEIKVIACETRPLNQGSRITTWELMQDKI 208 (339)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998289982996448872231675339999999998---7992599975786000107789999987699
Q ss_pred CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCCCCCCCCCEEEE
Q ss_conf 8655100--------880079863300047660588316577777879986-1022699962303513455788726787
Q gi|254781054|r 68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDFLGRGMLPIEID 138 (231)
Q Consensus 68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~Lg~~plPVEV~ 138 (231)
|..-+.+ -..+|..|=|||-|..|+-.=|=|=.-+- ++|. .---|.+.+-.|++-......-+|||-=
T Consensus 209 p~tlI~D~~~~~lm~~g~id~vivGADrI~~ngvaNKIGTy~lA---v~A~~~~iPfyVaaP~st~D~~~~~gdI~IEeR 285 (339)
T PRK06036 209 PVTLIADSMAGWVMRQGMVDSVIVGADRITQDVVFNKIGTYTHS---ILAKEHEIPFYVAAPLSTFDFEGWEGSVVIEER 285 (339)
T ss_pred CEEEEECCHHHHHHHHCCCCEEEECCCHHHCCCCHHHHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 75998354799999847877799842310125613433148999---999971987799920454357788898352147
No 35
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=82.35 E-value=0.33 Score=28.28 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=15.6
Q ss_pred CCCCCEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 89978998-8791789999999999873287048961
Q gi|254781054|r 18 VVDGMTLG-MGTGSTAKEFMILLADKIANGFRVQVIP 53 (231)
Q Consensus 18 v~~gmviG-lGtGSTv~~~i~~L~~~~~~~~~i~~v~ 53 (231)
+.+|++|| ||+|.-.+.+..+-.+ -|..+.++.
T Consensus 4 ~~p~~tIGIlGgGQLgrMla~aA~~---lG~~v~vld 37 (377)
T PRK06019 4 ILPGKTIGIIGGGQLGRMLALAAAP---LGYKVIVLD 37 (377)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEC
T ss_conf 8999999998786899999999997---899899984
No 36
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=82.01 E-value=4.6 Score=21.21 Aligned_cols=126 Identities=24% Similarity=0.152 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHCCCCCEE-------E----ECCCHHHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf 999999999838997899-------8----87917899999999998732870489618--------8999999873157
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTL-------G----MGTGSTAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI 67 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmvi-------G----lGtGSTv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi 67 (231)
-+..++...+++++|..| . .|-| |+--.|..+. +.|..+.++++ +.-|+..+.+.||
T Consensus 151 ~~~iG~~Ga~li~~~~~ILTHCNaGaLATa~g~G-TAlgvi~~a~---~~Gk~~~V~~~ETRP~lQGARLTA~EL~~~GI 226 (365)
T PRK05772 151 EIRMGLYGAEKLEDGDTVLTICNAGGLATGTGLG-TATAPIYLAK---MLGKKVSVIAPETRPWQQGARLTVYELMENGI 226 (365)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-HHHHHHHHHH---HCCCEEEEEEECCCCCCCCCCHHHHHHHHCCC
T ss_conf 9999997898718998588650765311135521-3899999998---66981799980781465674300999986798
Q ss_pred CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCCCCCCCCCEEEE
Q ss_conf 8655100--------880079863300047660588316577777879986-1022699962303513455788726787
Q gi|254781054|r 68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDFLGRGMLPIEID 138 (231)
Q Consensus 68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~Lg~~plPVEV~ 138 (231)
|+.-+.+ -..+|..|=|||-|..|+..+-==|--.+- ++|. .---|.+.+-.|++-..-....+|||--
T Consensus 227 p~tlI~Dn~a~~lM~~g~Vd~vivGADrI~~nGdvaNKIGTy~~A--v~Ak~~~vPfyVaap~st~d~~~~~~~i~IEeR 304 (365)
T PRK05772 227 PTTLIADTAVGLVMYKKMVNSVMVGADRILLDGHVFNKIGTLNEA--VLAHEFGIPFYVLAPTSTIDLKSKVEDVKIEER 304 (365)
T ss_pred CEEEEEHHHHHHHHHHCCCCEEEECCCEEECCCCEEEECCHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCEECCCC
T ss_conf 569984507999986488789998762555477068500428999--999983998899902676577688774413348
No 37
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=81.96 E-value=3.3 Score=22.10 Aligned_cols=147 Identities=23% Similarity=0.222 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHCC------CCCEEEECCCHHHHHHHHHHHHHHHC-CCE---EEE------E---ECHHHHH-HH
Q ss_conf 878999999999998389------97899887917899999999998732-870---489------6---1889999-99
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV------DGMTLGMGTGSTAKEFMILLADKIAN-GFR---VQV------I---PSSRNTE-NF 61 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~------~gmviGlGtGSTv~~~i~~L~~~~~~-~~~---i~~------v---~tS~~t~-~~ 61 (231)
+.++.-+.+|++-++.|+ ...|+||.||||-.-+-++|.++.++ +++ +.. + +.+.+|. ..
T Consensus 43 ~~~e~s~~iA~eIa~~Ir~kq~~gk~~VLGLATGSTP~~vY~eLIr~hke~~LSF~nV~tFNLDEY~gL~~~~~qSY~~f 122 (660)
T PRK02122 43 SSEEASNAVAQEIATLIRERQAENRPCVLGLATGSSPISVYAELIRMHKEEGLSFRNVITFNLDEYYPMSPESLQSYFRF 122 (660)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 98999999999999999999855998189728988879999999999871699720408995632079699982349999
Q ss_pred HHHCCCCCCC--CCCCCEEEE----------------EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHH
Q ss_conf 8731578655--100880079----------------8633000476605883165777778799861022699962303
Q gi|254781054|r 62 CKIHHIPLHS--PEDVSSVDL----------------SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESK 123 (231)
Q Consensus 62 a~~~gi~~~~--l~~~~~iDi----------------~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK 123 (231)
..+.=+.-++ .+.+--+|= .|.-+--+|-++--|=.-|-.=|.|-=-...|...++-.|++-
T Consensus 123 M~e~LFdhIDI~~eNihiPdG~~~~e~i~~~C~~YE~~I~~~GGIDlQLLGIG~nGHIGFNEPGS~~~S~TRvV~L~~~T 202 (660)
T PRK02122 123 MKEHLFDHVDIPPENIHIPDGTIPKEAILQYCRDYEQKIESAGGIDFQLLGIGRTGHIGFNEPGSHLNSRTRLVTLDHIT 202 (660)
T ss_pred HHHHHCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHH
T ss_conf 99870244699899804899998627899999999999997599888996678887213079998677885589898889
Q ss_pred CCCC---CC-CCCCCEEEEECCHHHHHHH
Q ss_conf 5134---55-7887267872575899999
Q gi|254781054|r 124 RVDF---LG-RGMLPIEIDQFGVNKTLSA 148 (231)
Q Consensus 124 ~v~~---Lg-~~plPVEV~p~~~~~v~~~ 148 (231)
..+. ++ .-.+|-.-+.++....+++
T Consensus 203 r~dnar~F~~~e~VP~~AITMGI~TIm~A 231 (660)
T PRK02122 203 RKDASSDFGGIDNVPRSAITMGVSTILKA 231 (660)
T ss_pred HHHHHHHCCCCCCCCCHHEECCHHHHHHC
T ss_conf 99998641881217632020458889708
No 38
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=81.93 E-value=2.9 Score=22.48 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEECC---CHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99999999998389978998879---1789999999999873287048961
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGT---GSTAKEFMILLADKIANGFRVQVIP 53 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGt---GSTv~~~i~~L~~~~~~~~~i~~v~ 53 (231)
.|...+.+|+++++|||+|.+|. =-+-..+|.+|-++-. +++++++
T Consensus 3 ~k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~~Gv--kdLt~I~ 51 (220)
T COG1788 3 KKLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIRQGV--KDLTVIS 51 (220)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCC--CCEEEEE
T ss_conf 035429999962879999998654566896999999997498--6359994
No 39
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=81.53 E-value=2.6 Score=22.78 Aligned_cols=42 Identities=29% Similarity=0.233 Sum_probs=19.9
Q ss_pred CCCEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
Q ss_conf 97899887-9178999999999987328704896188999999873157
Q gi|254781054|r 20 DGMTLGMG-TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHI 67 (231)
Q Consensus 20 ~gmviGlG-tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi 67 (231)
+-||+|+| ||.|+......|+ .++.+-+-|..-.....+.|+
T Consensus 154 ~v~VlGfGRtG~tiAr~f~aLG------A~V~V~AR~~~dlARI~E~g~ 196 (288)
T TIGR02853 154 NVMVLGFGRTGMTIARTFSALG------ARVSVGARSSADLARITEMGL 196 (288)
T ss_pred EEEEECCCCHHHHHHHHHHHCC------CEEEEECCCHHHHHHHHHHCC
T ss_conf 4578844705689999997269------805753178367899999606
No 40
>PRK06844 consensus
Probab=81.33 E-value=4.8 Score=21.06 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHCCCCCEE-EE-CCCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCC
Q ss_conf 99999999999838997899-88-7917-------899999999998732870489618--------8999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTL-GM-GTGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmvi-Gl-GtGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi 67 (231)
+.-+..++..++++++|..| =- -||| |+--.|..+. +.|+++.++++ |.-|+.++.+.||
T Consensus 138 ~~~~~iG~~Ga~li~~g~~ILTHCNtGaLAT~g~GTALgvI~~a~---~~g~~~~V~~~ETRP~lQGaRLTa~EL~~~gI 214 (341)
T PRK06844 138 EINRQIGEHALTLLHDGMGILTHCNAGALATTKYGTATAPMYLAK---EKGWDFKVYSDETRPRLQGSTLTALELQRAGI 214 (341)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998668998699635876300132046899999998---61665588755776022107779999976699
Q ss_pred CCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCCCC-CCCCCEEE
Q ss_conf 8655100--------880079863300047660588316577777879986-1022699962303513455-78872678
Q gi|254781054|r 68 PLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDFLG-RGMLPIEI 137 (231)
Q Consensus 68 ~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~Lg-~~plPVEV 137 (231)
|..-+.+ -..+|..|=|||-|..|+...-==|--.+- ++|. .---|.+.+-.|++-..+- ...+|||-
T Consensus 215 p~tlI~D~~a~~~m~~~~id~vivGADrIa~nGdvaNKIGTy~lA--v~A~~~~iPFyVaap~stiD~~~~~g~~I~IEe 292 (341)
T PRK06844 215 DVTVITDNMAAMVMSQGKIDAVIVGCDRVAANGDVANKIGTLGVS--ILAKYYNIPFYVAAPTPTIDLKTPTGKEIPIEE 292 (341)
T ss_pred CEEEEECCHHHHHHHHCCCCEEEECCCEEECCCCEEEECCHHHHH--HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 759983747899850178688998651674377077402449999--999980998799802687687789988545326
Q ss_pred E
Q ss_conf 7
Q gi|254781054|r 138 D 138 (231)
Q Consensus 138 ~ 138 (231)
=
T Consensus 293 R 293 (341)
T PRK06844 293 R 293 (341)
T ss_pred C
T ss_conf 8
No 41
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=79.76 E-value=5.2 Score=20.86 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHCC-------CCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389-------97899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV-------DGMTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~-------~gmviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|.+++=+.||+..++.++ +..+|||-||+|-..+-+.|.+..++
T Consensus 8 ~~~els~~aA~~i~~~i~~~~~~~~~~~~l~la~G~tp~~~y~~L~~~~~~ 58 (264)
T PRK00443 8 TAEEVGKWAARHIVNRINAFLPTKDRPFVLGLATGSTPLGTYKALIELHKA 58 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999999988623897399968988989999999999861
No 42
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=79.70 E-value=0.79 Score=25.95 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC----CEEEEEECCHH-CCCCCCEEEE-CCC
Q ss_conf 87917899999999998732870489618899999987315786551008----80079863300-0476605883-165
Q gi|254781054|r 26 MGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV----SSVDLSIDGFD-EIDSRLRLIK-GYG 99 (231)
Q Consensus 26 lGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~----~~iDi~iDGaD-evd~~l~lIK-GgG 99 (231)
-|||.|+. -..|+ +.+....|++..--+..|++.|+++..++.. +++|.++|.-- |+-.+.|++= |+=
T Consensus 9 pGsG~TTv--a~~lA----e~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVlegrL 82 (179)
T COG1102 9 PGSGKTTV--ARELA----EHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEGRL 82 (179)
T ss_pred CCCCCHHH--HHHHH----HHHCCCEEECCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHH
T ss_conf 99970279--99999----9829715621279999999839999999998751921669988999999872895870045
Q ss_pred HH
Q ss_conf 77
Q gi|254781054|r 100 GA 101 (231)
Q Consensus 100 gA 101 (231)
++
T Consensus 83 A~ 84 (179)
T COG1102 83 AG 84 (179)
T ss_pred HH
T ss_conf 78
No 43
>KOG1465 consensus
Probab=79.53 E-value=5.5 Score=20.69 Aligned_cols=132 Identities=21% Similarity=0.154 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHHCCC--EEEEEECHH--HHHHHHHHCCCC--CCCCCC----
Q ss_conf 99999999998389978-9988791789999999999873287--048961889--999998731578--655100----
Q gi|254781054|r 6 MKRNAARRAIQYVVDGM-TLGMGTGSTAKEFMILLADKIANGF--RVQVIPSSR--NTENFCKIHHIP--LHSPED---- 74 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~--~i~~v~tS~--~t~~~a~~~gi~--~~~l~~---- 74 (231)
..+..|..|.+++.++. ++-+|+-.||..|+..-+++-+... -..+.|--. .-+..+.+.|+. +++...
T Consensus 148 ~~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~ 227 (353)
T KOG1465 148 SRENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAM 227 (353)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 56769999998740473598427618899999999961671589996237764434764778975871588330999997
Q ss_pred CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCC----EEEEEEHHHCCCCC-------CCCCCCEEEEECCH
Q ss_conf 8800798633000476605883165777778799861022----69996230351345-------57887267872575
Q gi|254781054|r 75 VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASR----FIVIGDESKRVDFL-------GRGMLPIEIDQFGV 142 (231)
Q Consensus 75 ~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~----~I~i~D~sK~v~~L-------g~~plPVEV~p~~~ 142 (231)
..++.-.|=|+-.|-+|+-++-- -|++ .+|.+|++ +++++---||++.. ..|-=|=|++||.-
T Consensus 228 MsrVnKVIigt~avl~NGgl~~~-~G~~----~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e 301 (353)
T KOG1465 228 MSRVNKVIIGTHAVLANGGLRAP-SGVH----TVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSE 301 (353)
T ss_pred HHHCCEEEEEEEEEECCCCEECC-CHHH----HHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 64346389975468538976325-4088----99999873487679952243258888898888875278132567656
No 44
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=79.52 E-value=5.5 Score=20.69 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389--97899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV--DGMTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~--~gmviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|-++|-+.||+.-.+.|+ +.-++||-||||-.-+-++|.++.++
T Consensus 8 dy~~~s~~aa~~i~~~i~~k~~~~l~latG~TP~~~Y~~L~~~~~~ 53 (236)
T PRK09762 8 NYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQ 53 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999987899299958988989999999999971
No 45
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=78.79 E-value=5.8 Score=20.55 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=35.9
Q ss_pred HHHHHH---HCCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 999998---3899789988--791789999999999873287048961889999998731578
Q gi|254781054|r 11 ARRAIQ---YVVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 11 a~~A~~---~v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
|..|+. .+++|..|=+ |+|+.=.++++ |++. .|.++.++.+|..-...++++|+.
T Consensus 92 A~~al~~~~~i~~g~~VlI~gg~G~vG~~aiq-lak~--~Ga~Vi~t~~s~~k~~~~~~lG~~ 151 (288)
T smart00829 92 AYYALVDLARLRPGESVLIHAAAGGVGQAAIQ-LAQH--LGAEVFATAGSPEKRDFLRELGIP 151 (288)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH-HHHH--CCCCEEEEECCHHHHHHHHHCCCC
T ss_conf 99999975088999999997898677799999-9997--398300340888999999976999
No 46
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=77.01 E-value=2.7 Score=22.63 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred EECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCC
Q ss_conf 8316577777879986102269996230351345
Q gi|254781054|r 95 IKGYGGALLREKIIAHAASRFIVIGDESKRVDFL 128 (231)
Q Consensus 95 IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~L 128 (231)
|-=||-+|+| --|.+-+...+++|..-+-..|
T Consensus 123 IDIGGptmlR--aAAKN~~~V~V~~dp~Dy~~vl 154 (515)
T COG0138 123 IDIGGPTMLR--AAAKNHKDVTVVVDPADYAAVL 154 (515)
T ss_pred CCCCCHHHHH--HHHHCCCCEEEEECCHHHHHHH
T ss_conf 5567617768--7663258705986601468999
No 47
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=76.91 E-value=6.6 Score=20.21 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHC-------CCCCEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 87899999999999838-------9978998879178999999999987328
Q gi|254781054|r 2 DALQMKRNAARRAIQYV-------VDGMTLGMGTGSTAKEFMILLADKIANG 46 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v-------~~gmviGlGtGSTv~~~i~~L~~~~~~~ 46 (231)
|.+++=+.||+.-++.| ++..+|||-||||-..+-+.|++..+++
T Consensus 8 d~~~~~~~aA~~i~~~i~~~~~~~~~~~~i~LsgG~tP~~~y~~L~~~~~~~ 59 (253)
T PTZ00285 8 DADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREG 59 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999999999999998665039982999699834999999999998615
No 48
>pfam06555 consensus
Probab=76.76 E-value=6.7 Score=20.19 Aligned_cols=175 Identities=20% Similarity=0.254 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCC-CEEEE--E-ECHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 99999999998389978998879178999999999987328-70489--6-18899999987315786551008800798
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG-FRVQV--I-PSSRNTENFCKIHHIPLHSPEDVSSVDLS 81 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~-~~i~~--v-~tS~~t~~~a~~~gi~~~~l~~~~~iDi~ 81 (231)
-++.|...++++|++|+.||.|.--|.... - +-+.++++ ....- . ..+..-........ -.-|+|
T Consensus 19 t~eeA~~~~~~lI~~g~sV~~GGS~Tl~e~-G-l~e~L~~~~~~~~d~~~~~~~~ee~~e~~r~a---------~~aD~f 87 (200)
T pfam06555 19 NKEEALELILELIPEGSTVGFGGSMTLFEI-G-VIELLRSGNYEFLDRYKEGLSPEEKLEIRRKA---------LTADYF 87 (200)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCHHHHHHH-C-CHHHHHHCCCEEEECCCCCCCHHHHHHHHHHH---------HCCCEE
T ss_conf 999999999986899899986931718874-9-69999839988982666679989999999996---------579999
Q ss_pred ECCHHCCCCCCEE--EECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 6330004766058--83165777778799861022699962303513455788726787257589999998632214898
Q gi|254781054|r 82 IDGFDEIDSRLRL--IKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLN 159 (231)
Q Consensus 82 iDGaDevd~~l~l--IKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~ 159 (231)
+-++--+..++.| |-|-|- |==-+.+-.++.|+|+--.|+|+.|. ..+++++.+....+
T Consensus 88 l~S~NAiT~dG~LvNiDg~GN---RVaa~~fGpk~Vi~V~G~NKIv~dle--------------~A~~Rir~~AaP~N-- 148 (200)
T pfam06555 88 LTSTNAITEDGELVNIDGNGN---RVAAMIFGPKNVIVVAGINKIVKDLE--------------EAIKRIKTIAAPMN-- 148 (200)
T ss_pred EECHHHCCCCCEEEEECCCCC---HHHHHHCCCCEEEEEEECCCCCCCHH--------------HHHHHHHHHCCCCC--
T ss_conf 865204057875999727734---55531028971999971773569999--------------99999987447823--
Q ss_pred CEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCC
Q ss_conf 50377225886362578888998207986898999999627996866480247677899977998
Q gi|254781054|r 160 EELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224 (231)
Q Consensus 160 ~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG 224 (231)
..|++. .-|. +-.| +-.||.-++ ++.+.--+.+.+-+.+....++|+.+=|
T Consensus 149 -a~Rl~~--~tPC-~~tg-~C~dC~sp~---------rIC~~~~i~~~~~~~~ri~VILV~E~LG 199 (200)
T pfam06555 149 -AKRLNK--KTPC-AKTG-FCVDCKSPD---------RICNNFTIIKRSPPKGRIKVILIGEDLG 199 (200)
T ss_pred -HHHCCC--CCCC-CCCC-EECCCCCCC---------CEEEEEEEEECCCCCCCEEEEEECCCCC
T ss_conf -444289--9987-6464-664899964---------5701367882378999879999788679
No 49
>pfam04223 CitF Citrate lyase, alpha subunit (CitF). In citrate-utilising prokaryotes, citrate lyase EC:4.1.3.6 cleaves intracellular citrate into acetate and oxaloacetate, and is organized as a functional complex consisting of alpha, beta, and gamma subunits. The gamma subunit serves as an acyl carrier protein (ACP), and has a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group. The citrate lyase is active only if this prosthetic group is acetylated; this acetylation is catalysed by an acetate:SH-citrate lyase ligase. The alpha subunit substitutes citryl for the acetyl group to form citryl-S-ACP. The beta subunit completes the reaction by cleaving the citryl to yield oxaloacetate and (regenerated) acetyl-S-ACP. This family represents the alpha subunit EC:2.8.3.10.
Probab=75.48 E-value=7.2 Score=19.97 Aligned_cols=192 Identities=22% Similarity=0.256 Sum_probs=101.2
Q ss_pred HHHHHHHHHHH------HCCCCCEEEECCCHHHHHHHHHHHHHHHC-CCEEEEE---ECHHHHHHHH-------------
Q ss_conf 99999999998------38997899887917899999999998732-8704896---1889999998-------------
Q gi|254781054|r 6 MKRNAARRAIQ------YVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVI---PSSRNTENFC------------- 62 (231)
Q Consensus 6 ~K~~~a~~A~~------~v~~gmviGlGtGSTv~~~i~~L~~~~~~-~~~i~~v---~tS~~t~~~a------------- 62 (231)
...+.|+.|.+ |.++|...--|+|-..-.+.++|.+..++ +....+. -|+.-..++-
T Consensus 208 ~~L~IA~~aa~vI~~sg~~kdGFSfQTGaGGaSLAv~~~l~~~M~~~~Ik~sFa~GGIT~~~vdmleeGL~~~l~DvQ~F 287 (466)
T pfam04223 208 KELLIARYAADVIVNSPYFKEGFSFQTGTGGASLAVTRFLREKMIRENIKASFALGGITATMVDLLEEGLVDKLLDVQDF 287 (466)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89899999999998577653763666588869999999999999975976998877740999999871334634113246
Q ss_pred ---------H----------HCCCCCCCCCCCCEEEEEECCHHCCCCCCEE---------EECCCHHHHHHHHHHHHHCC
Q ss_conf ---------7----------3157865510088007986330004766058---------83165777778799861022
Q gi|254781054|r 63 ---------K----------IHHIPLHSPEDVSSVDLSIDGFDEIDSRLRL---------IKGYGGALLREKIIAHAASR 114 (231)
Q Consensus 63 ---------~----------~~gi~~~~l~~~~~iDi~iDGaDevd~~l~l---------IKGgGgAl~rEKiva~~a~~ 114 (231)
+ .+.=|...-.-++++|+.|-||=|||-++|. |-|+-|-|-- -|..|+-
T Consensus 288 Dl~Av~S~~~np~H~eisas~YAnP~~kga~vn~LDvviL~AlEiD~~FNVNV~TgSdGvi~GasGGH~D---TAagAkl 364 (466)
T pfam04223 288 DSVSAQSLARNPNHIEIDANQYANPSSKGASVDRLDVVILSALEIDTKFNVNVMTGSDGVIRGASGGHCD---TAAAAKL 364 (466)
T ss_pred CHHHHHHHHHCCCCEEECHHHHCCCCCCCCEECCCCEEEEEEEEEECCCCEEEEECCCCEECCCCCCCCH---HHHHCCC
T ss_conf 6899998861988448867771588888854022457998613640576226887898658168788834---4652674
Q ss_pred EEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEE----------C
Q ss_conf 699962303513455788726787257589999998632214898503772258863625788889982----------0
Q gi|254781054|r 115 FIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDA----------F 184 (231)
Q Consensus 115 ~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~----------~ 184 (231)
.|+++ .|-+.-+|.-|-. + .-. ..-|-.- + -++||.|=-|=.. .
T Consensus 365 tIiva-------PL~rgRip~ivd~-----V----ttv-~TPGetV--------D-VvVTe~GIAVNP~R~dL~e~l~~a 418 (466)
T pfam04223 365 SIIVA-------PLVRGRIPTVVDK-----V----TTV-ITPGSSV--------D-VLVTEHGIAINPNRPDLIERLSEA 418 (466)
T ss_pred EEEEE-------HHHCCCCCEEECC-----E----EEE-CCCCCCE--------E-EEEECCCEEECCCCHHHHHHHHHC
T ss_conf 79970-------4444888878677-----1----378-6899815--------4-899237466588988999999858
Q ss_pred CCCCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEE
Q ss_conf 7986898999999627996866480247677899977998499
Q gi|254781054|r 185 FGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECL 227 (231)
Q Consensus 185 ~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~ 227 (231)
..++.+.++|..+-.++.|.=+---|.+.. ..+|-+.||++.
T Consensus 419 ~lp~~~IeeL~~~A~~i~G~P~pi~~~drv-VavveyRDGtvi 460 (466)
T pfam04223 419 PLPVVTIEELQERAYLITGKPQPIEFTDKV-VALIEYRDGSLI 460 (466)
T ss_pred CCCEEEHHHHHHHHHHHCCCCCCCCCCCCE-EEEEEECCCCEE
T ss_conf 998535999999999853999887888927-999996488668
No 50
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=74.25 E-value=7.8 Score=19.78 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.1
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHH
Q ss_conf 3899789988791789999999999873287048961889999998
Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a 62 (231)
..+..-+||+|+|++.... ++++.+ .++-...+||+-.|--.+
T Consensus 82 ~~~~d~vIGVGGGk~iD~a-K~~A~~--~~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 82 EDGADVVIGVGGGKTIDTA-KAAAYR--LGLPFISVPTIASTDAIT 124 (360)
T ss_pred CCCCCEEEEECCCHHHHHH-HHHHHH--CCCCEEECCCCCCCCCCC
T ss_conf 4799989995681899999-999998--199979805764445556
No 51
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=72.93 E-value=7.7 Score=19.80 Aligned_cols=138 Identities=13% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC-CE---EEE-EECCHHC
Q ss_conf 999838997899887917899999999998732870489618899999987315786551008-80---079-8633000
Q gi|254781054|r 13 RAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV-SS---VDL-SIDGFDE 87 (231)
Q Consensus 13 ~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~-~~---iDi-~iDGaDe 87 (231)
.++....+-..|=.=|-..|.++.+.|.+.-.....+..++-...|+..++++|+++..+... +. +++ ..-.+..
T Consensus 48 ~~l~~l~~~d~vifvS~nAv~~~~~~l~~~~~~~~~~~~~AVG~~TA~aL~~~G~~v~~p~~~~~SE~LL~lp~l~~~~~ 127 (255)
T PRK05752 48 ALLLELDRYCAVIVVSKPAARLGLELLDEYWPQPPQQPWFSVGAATAAILQDYGLDVSYPEQGDDSEALLALPALRQALA 127 (255)
T ss_pred HHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHC
T ss_conf 99862888688999877999999999986288953382899889999999976998244898777678860554542204
Q ss_pred CC-CCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCC--------CCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 47-66058831657-7777879986102269996230351--------345578872678725758999999863
Q gi|254781054|r 88 ID-SRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRV--------DFLGRGMLPIEIDQFGVNKTLSALKEV 152 (231)
Q Consensus 88 vd-~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v--------~~Lg~~plPVEV~p~~~~~v~~~l~~~ 152 (231)
+. ..--+++|-|| -++.|-+-+.-+.-..+.+=+.... ..+. .-.+..+-+....+.+.+.++
T Consensus 128 ~~g~rVLi~rG~gGR~~L~~~L~~rGa~V~~~~~YrR~~p~~~~~~~~~~~~--~~~id~i~~TS~e~l~~l~~l 200 (255)
T PRK05752 128 VPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVE--AERLNGLVVSSGQGFEHLLQL 200 (255)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHH--HCCCCEEEECCHHHHHHHHHH
T ss_conf 7788799981676178999999988998989987884389998499999998--089999998819999999997
No 52
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=72.66 E-value=8.5 Score=19.54 Aligned_cols=127 Identities=23% Similarity=0.210 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHC---CCCCEE-E-ECCCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHC
Q ss_conf 9999999999838---997899-8-87917-------899999999998732870489618--------89999998731
Q gi|254781054|r 6 MKRNAARRAIQYV---VDGMTL-G-MGTGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIH 65 (231)
Q Consensus 6 ~K~~~a~~A~~~v---~~gmvi-G-lGtGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~ 65 (231)
.-+..++..++++ ++|..| = =-||+ |+--.|..+. +.|.++.++++ |.-|+..+.+.
T Consensus 137 ~~~~iG~~Ga~li~~~~~~~~ILTHCNaGaLAT~g~GTALgvIr~a~---~~Gk~~~V~~~ETRP~lQGaRLTA~EL~~~ 213 (351)
T PRK05720 137 ANRAIGEHGLALIRAIADGKGILTHCNAGWLATAGYGTALAPIYAAK---EAGRNIHVYADETRPRLQGARLTAWELGQE 213 (351)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999986546998598642687534562668999999999---879915999678860334477899999866
Q ss_pred CCCCCCCCC--------CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHH-HHCCEEEEEEHHHCCCCCCC-CCCCE
Q ss_conf 578655100--------880079863300047660588316577777879986-10226999623035134557-88726
Q gi|254781054|r 66 HIPLHSPED--------VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAH-AASRFIVIGDESKRVDFLGR-GMLPI 135 (231)
Q Consensus 66 gi~~~~l~~--------~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~-~a~~~I~i~D~sK~v~~Lg~-~plPV 135 (231)
|||+.-+.+ ...+|..|=|||-|..|+...-==|--.+- ++|. .---|.+.+-.|++-..+.. .-+||
T Consensus 214 gIp~tlI~Ds~a~~lm~~g~id~vivGADri~~nGdvaNKIGTy~lA--v~A~~~~vPfyVaap~st~D~~~~~g~~I~I 291 (351)
T PRK05720 214 GIPVTLITDNMAAHLMQQGKIDAVIVGADRIAANGDVANKIGTYQLA--IAAKHHGVPFYVAAPSSTIDFSLADGKEIPI 291 (351)
T ss_pred CCCEEEEECCHHHHHHHCCCCCEEEECCCEEECCCCEEEHHHHHHHH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf 98669980767999997079999998950431587266043469999--9999749986997236754767899761020
Q ss_pred EE
Q ss_conf 78
Q gi|254781054|r 136 EI 137 (231)
Q Consensus 136 EV 137 (231)
|-
T Consensus 292 Ee 293 (351)
T PRK05720 292 EE 293 (351)
T ss_pred EC
T ss_conf 30
No 53
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=71.65 E-value=8.9 Score=19.40 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCC-CEEEEEECH-HHHHHHHHHCCCCCCCCCC
Q ss_conf 9978998879178999999999987328-704896188-9999998731578655100
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANG-FRVQVIPSS-RNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~-~~i~~v~tS-~~t~~~a~~~gi~~~~l~~ 74 (231)
.+..++=+|+|.+....+++|.++ | .++++..-+ .+.+.++.++|....++++
T Consensus 177 ~~~~vLviGaGem~~l~~~~L~~~---g~~~i~v~nRt~~ra~~la~~~g~~~~~~~~ 231 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK---GVAEITIANRTYERAEELAKELGGNAVPLDE 231 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHCCCEEECHHH
T ss_conf 116799986879999999999965---9982599768678999999974989972999
No 54
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=70.56 E-value=9.4 Score=19.25 Aligned_cols=44 Identities=27% Similarity=0.378 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 878999999999998389--97899887917899999999998732
Q gi|254781054|r 2 DALQMKRNAARRAIQYVV--DGMTLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~--~gmviGlGtGSTv~~~i~~L~~~~~~ 45 (231)
|.+++=+.+|+.-.+.|+ +.-+|||-||||-.-+-+.|++..++
T Consensus 8 ~~~e~s~~aA~~i~~~i~~~~~~~l~LatGsTP~~~y~~L~~~~~~ 53 (239)
T PRK12358 8 DYEEMSRVAAHHLLGYMSKTKRVNLAITAGSTPKGMYEYLTTLVKG 53 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 9999999999999999974899489979987989999999999625
No 55
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=69.18 E-value=9.8 Score=19.15 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=34.8
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEE-------CCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCC
Q ss_conf 999873157865510088007986-------33000476605883165777778799861022699962303513
Q gi|254781054|r 59 ENFCKIHHIPLHSPEDVSSVDLSI-------DGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126 (231)
Q Consensus 59 ~~~a~~~gi~~~~l~~~~~iDi~i-------DGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~ 126 (231)
...++++||+-+++= -+++|= .++|+ +.-...|-=||-+|+| --|.+-+...+|+|.+-+-+
T Consensus 86 ~~~l~~~~i~~IDlV---vvNLYPFe~~v~~~~~~~-~~~IEnIDIGGpsmiR--AAAKN~~~V~Vi~dp~dY~~ 154 (514)
T PRK00881 86 VAALEEHGIEPIDLV---VVNLYPFEETVAKPGVTL-EEAIENIDIGGPTMVR--AAAKNHKDVTVVVDPADYDA 154 (514)
T ss_pred HHHHHHCCCCCEEEE---EEECCCHHHHHCCCCCCH-HHHHHHCCCCCHHHHH--HHHHCCCCEEEECCHHHHHH
T ss_conf 999997699963389---981454698750489998-9998844777499999--98744787599647899999
No 56
>pfam02602 HEM4 Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyses the reaction: Hydroxymethylbilane <= uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.
Probab=68.51 E-value=10 Score=18.98 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=72.2
Q ss_pred HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH---CCCEEEEEECHHHHHHHHHHCCCCCCCC-C-CCC--E-EEEEEC
Q ss_conf 999983899789988791789999999999873---2870489618899999987315786551-0-088--0-079863
Q gi|254781054|r 12 RRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA---NGFRVQVIPSSRNTENFCKIHHIPLHSP-E-DVS--S-VDLSID 83 (231)
Q Consensus 12 ~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~---~~~~i~~v~tS~~t~~~a~~~gi~~~~l-~-~~~--~-iDi~iD 83 (231)
..+++...+-..|=+=|+..|.+|.+.+.+... ....+.+++-...|+..++++|++.... . ... . ++. +.
T Consensus 31 ~~~l~~l~~~d~iiftS~~aV~~~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~~~~~~~~~~~~~L~~~-i~ 109 (229)
T pfam02602 31 DEALEDLGEYDWLIFTSANGVRAFFEALKEAGADLRALANLKIAAVGPKTARALREAGLTPDFVPSAEGTAEGLAEE-LA 109 (229)
T ss_pred HHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCEEECCCCCCHHHHHHH-HH
T ss_conf 99986165778899948899999999998606542354566499837899999998499960879888899999997-76
Q ss_pred CHHCCCCCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHC--------CCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 30004766058831657-777787998610226999623035--------13455788726787257589999998632
Q gi|254781054|r 84 GFDEIDSRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKR--------VDFLGRGMLPIEIDQFGVNKTLSALKEVA 153 (231)
Q Consensus 84 GaDevd~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~--------v~~Lg~~plPVEV~p~~~~~v~~~l~~~~ 153 (231)
. +.-....-.+.|.++ .-+.+.+-....+-.-+.+=++.. .+.+- .-.++++.|......+.+-++.
T Consensus 110 ~-~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~--~~~~d~i~ftS~~~v~~f~~~~ 185 (229)
T pfam02602 110 E-LLAGKRVLLLRGNLGRDDLAEALREAGAKVDEVVVYRTVPPAELPEELRELLR--AGEIDAVVFTSPSTVRSFLELL 185 (229)
T ss_pred H-CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHH--HCCCCEEEECCHHHHHHHHHHH
T ss_conf 4-26898699972777736789999977986789988886369877699999998--2899899987999999999987
No 57
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=67.04 E-value=3.2 Score=22.15 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=72.8
Q ss_pred CEEEEEECCHHCCCCCC---EE---EECC---CHHHHHHHHH------HHHHCC--EEEEEEHHHCCCCCC-CCCCCEE-
Q ss_conf 80079863300047660---58---8316---5777778799------861022--699962303513455-7887267-
Q gi|254781054|r 76 SSVDLSIDGFDEIDSRL---RL---IKGY---GGALLREKII------AHAASR--FIVIGDESKRVDFLG-RGMLPIE- 136 (231)
Q Consensus 76 ~~iDi~iDGaDevd~~l---~l---IKGg---GgAl~rEKiv------a~~a~~--~I~i~D~sK~v~~Lg-~~plPVE- 136 (231)
+++.-++|-|=+.|.+- .. |||+ .+.|=.|+.+ -....+ ..+.-=+.|+-+-=| .+-+|..
T Consensus 216 ~eL~~a~~~Af~~d~~v~vE~~~~~i~grEl~v~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~pa~~ 295 (375)
T TIGR01205 216 EELEAALDEAFKYDERVIVEEFKQRIKGRELEVSILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVIPAPA 295 (375)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEECCCC
T ss_conf 89999999861559659998111478985268988707974324540675356767600002114277887326515656
Q ss_pred -EEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCC-CCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCC
Q ss_conf -8725758999999863221489850377225886362578-88899820798689899999962799686648024767
Q gi|254781054|r 137 -IDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDG-GNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMV 214 (231)
Q Consensus 137 -V~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDn-GN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~ 214 (231)
+-+.-...+...-.+.++.++++.-.|.- +|+|++ |++-|= |+|.+||--+|.+|..++
T Consensus 296 ~L~~~~~~~i~~~a~~ay~~~~~~G~~R~D-----Ff~~~~~G~~yLn--------------EiNT~PGmT~~Sl~P~~~ 356 (375)
T TIGR01205 296 GLDEELEEKIKELALKAYKALGCRGLARVD-----FFLDKETGEIYLN--------------EINTIPGMTAISLFPKAA 356 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-----EEEECCCCEEEEE--------------EECCCCCCCCHHHHHHHH
T ss_conf 788899999999999999840887448998-----9987288869999--------------876888872012699999
Q ss_pred CE
Q ss_conf 78
Q gi|254781054|r 215 DC 216 (231)
Q Consensus 215 d~ 216 (231)
..
T Consensus 357 ~~ 358 (375)
T TIGR01205 357 AA 358 (375)
T ss_pred HH
T ss_conf 97
No 58
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=64.68 E-value=12 Score=18.51 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=22.7
Q ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 8879178999999999987328704896188999
Q gi|254781054|r 25 GMGTGSTAKEFMILLADKIANGFRVQVIPSSRNT 58 (231)
Q Consensus 25 GlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t 58 (231)
|-|||-|..|++.++.-....+..+ +|+|+..+
T Consensus 55 gTGtGKTlaYL~Pai~~a~~~~~~v-vIST~T~~ 87 (697)
T PRK11747 55 GTGVGKSLAYLLAGIPIARAEKKKL-VISTATVA 87 (697)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCE-EEECCCHH
T ss_conf 9972089999999999999829979-99889889
No 59
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=63.56 E-value=13 Score=18.38 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHH-HHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 789999999999983899789988791789999999999873287048961889-9999987315786551008800798
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSR-NTENFCKIHHIPLHSPEDVSSVDLS 81 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~-~t~~~a~~~gi~~~~l~~~~~iDi~ 81 (231)
..++++.+|++ .-+.+.. |=+|.||+- +|..+.+.. .+..+.+.++++ .-...++..|.++.....- -|+.
T Consensus 57 ~~~Lr~~ia~~--~gv~~~~-v~~gnGs~e--~i~~~~~~~-~gd~v~i~~P~f~~Y~~~~~~~g~~~~~vpl~--~~f~ 128 (337)
T PRK03967 57 ADPLREAIAEF--LGLDAEN-IIVGNGSDE--LISYLVKLF-NGKYIVISPPTFGMYSFYAKLNGIPVIDVPLK--EDFT 128 (337)
T ss_pred HHHHHHHHHHH--HCCCHHE-EEECCCHHH--HHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCEEEEEECC--CCCC
T ss_conf 79999999998--6838410-998278899--999999863-99979986898308999999839859996153--4567
Q ss_pred ECCHH--CCCCCCEEE-EC-----CCHHHHHHHHHHHHHCCEEEEEEHH
Q ss_conf 63300--047660588-31-----6577777879986102269996230
Q gi|254781054|r 82 IDGFD--EIDSRLRLI-KG-----YGGALLREKIIAHAASRFIVIGDES 122 (231)
Q Consensus 82 iDGaD--evd~~l~lI-KG-----gGgAl~rEKiva~~a~~~I~i~D~s 122 (231)
+|-.+ +..++-.+| =+ =|..+-+|.+.........+++||.
T Consensus 129 ~d~~~~~~~~~~~~~v~l~nPnNPTG~~~~~~el~~~~~~~~~vvvDEa 177 (337)
T PRK03967 129 IDGDRIVEKAKDASAVFICSPNNPTGNLQPIEEILKVLDTGKPVVVDEA 177 (337)
T ss_pred CCHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEECCC
T ss_conf 8999998517788789993899987621678999986500887884355
No 60
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=62.21 E-value=12 Score=18.51 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=10.4
Q ss_pred HHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf 77879986102269996230351
Q gi|254781054|r 103 LREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 103 ~rEKiva~~a~~~I~i~D~sK~v 125 (231)
|--|++.+.-.--|+++.....+
T Consensus 219 FAwkv~K~vKSNAIVlakn~~ti 241 (391)
T PRK07106 219 IALITLKYTQSNSVCYAKDGQAI 241 (391)
T ss_pred HHHHHHHHCCCCEEEEEECCCEE
T ss_conf 99999976456639999689289
No 61
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=61.73 E-value=14 Score=18.18 Aligned_cols=127 Identities=20% Similarity=0.116 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHCCCCCEE-EE-CCCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCCC
Q ss_conf 9999999999838997899-88-7917-------899999999998732870489618--------89999998731578
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTL-GM-GTGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHIP 68 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmvi-Gl-GtGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi~ 68 (231)
.-+..++...+++++|..| -- -||+ |+--.|..+. +.|..+.++++ +.-|+.++.+.|||
T Consensus 122 ~~~~ig~~G~~li~~~~~ILTHCNtGaLAT~g~GTAlgvir~a~---~~Gk~~~V~~~ETRP~lQGARLTA~EL~~~gIp 198 (338)
T PRK06371 122 RSKKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPMRIAH---DSGKNIFVFVDETRPRLQGAKLTAWELAQEGID 198 (338)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHH---HCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999998999728998696125875187657542899999999---879847999568731224445359999866997
Q ss_pred CCCCCC--------CCEEEEEECCHHCCCCCCEEE-ECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCCC-CCCCEEE
Q ss_conf 655100--------880079863300047660588-31657777787998-610226999623035134557-8872678
Q gi|254781054|r 69 LHSPED--------VSSVDLSIDGFDEIDSRLRLI-KGYGGALLREKIIA-HAASRFIVIGDESKRVDFLGR-GMLPIEI 137 (231)
Q Consensus 69 ~~~l~~--------~~~iDi~iDGaDevd~~l~lI-KGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg~-~plPVEV 137 (231)
..-+.+ -..+|..|=|||-|..|+... |=|-.-+- ++| ..---|.+.+-.|.+-..+-. ..+|||-
T Consensus 199 ~tlI~Dnma~~lM~~g~ID~viVGADrI~~nGdvaNKIGTy~~A---v~A~~~~iPfyVaaP~st~D~~~~~g~~I~IEe 275 (338)
T PRK06371 199 HAIIADNAAGFYMRRKEVDLVIVGADRIASNGDFANKIGTYEKA---VLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEE 275 (338)
T ss_pred EEEECCCHHHHHHHHCCCCEEEEECCEEECCCEEEEEHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCCCCCEEEECC
T ss_conf 27970307999997177877998011334266077401258999---999981998899941676666889998234516
Q ss_pred E
Q ss_conf 7
Q gi|254781054|r 138 D 138 (231)
Q Consensus 138 ~ 138 (231)
-
T Consensus 276 R 276 (338)
T PRK06371 276 R 276 (338)
T ss_pred C
T ss_conf 7
No 62
>PRK10867 signal recognition particle protein; Provisional
Probab=59.46 E-value=15 Score=17.93 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=55.0
Q ss_pred CEEEE-CCCHHHHHHHHHHHHHHH--CCCEEEEEEC-------HHHHHHHHHHCCCCCCCCC-CCCEEEEEECCHHCCC-
Q ss_conf 89988-791789999999999873--2870489618-------8999999873157865510-0880079863300047-
Q gi|254781054|r 22 MTLGM-GTGSTAKEFMILLADKIA--NGFRVQVIPS-------SRNTENFCKIHHIPLHSPE-DVSSVDLSIDGFDEID- 89 (231)
Q Consensus 22 mviGl-GtGSTv~~~i~~L~~~~~--~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l~-~~~~iDi~iDGaDevd- 89 (231)
|.+|| |+|-|+... -||...+ .++.+-.|+. -.+-+.++++.++|+.... ..+.++++.||..+.-
T Consensus 104 m~vGLqGsGKTTT~a--KLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~~ak~ 181 (453)
T PRK10867 104 LMAGLQGAGKTTSVG--KLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181 (453)
T ss_pred EEECCCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 997468885185899--999999973898379855887705899999999985198043678899889999999999997
Q ss_pred --CCCEEEECCCHHHHHHHHHHHHH
Q ss_conf --66058831657777787998610
Q gi|254781054|r 90 --SRLRLIKGYGGALLREKIIAHAA 112 (231)
Q Consensus 90 --~~l~lIKGgGgAl~rEKiva~~a 112 (231)
.+.-+|---|=-|..|-+.....
T Consensus 182 ~~~DvvivDTAGRl~~d~~Lm~El~ 206 (453)
T PRK10867 182 KFYDVLLVDTAGRLHVDEAMMDEIK 206 (453)
T ss_pred CCCCEEEEECCCCHHCCHHHHHHHH
T ss_conf 7999999978760121088899999
No 63
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=59.45 E-value=5.3 Score=20.82 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC---CEEEEEEC
Q ss_conf 7917899999999998732870489618899999987315786551008---80079863
Q gi|254781054|r 27 GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV---SSVDLSID 83 (231)
Q Consensus 27 GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~---~~iDi~iD 83 (231)
|||.|+- .+.|| +.+....|+ +=.-+.+|++.|+.+...+.. +.||=-||
T Consensus 10 GSGktTv--A~~lA----~~Lsl~~iS-aG~iRelA~~~Gldl~E~~~aee~~eIDk~iD 62 (173)
T TIGR02173 10 GSGKTTV--AKILA----EKLSLKLIS-AGDIRELAEKMGLDLAESKYAEENPEIDKKID 62 (173)
T ss_pred CCCHHHH--HHHHH----HHCCCCEEC-CCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHH
T ss_conf 6864789--99999----863983120-20078898642988777344305863116753
No 64
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase; InterPro: IPR005941 The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . Succinyl-diaminopimelate desuccinylase (3.5.1.18 from EC) hydrolyses N-succinyl-L,L-diaminopimelic acid which is required for the bacterial synthesis of lysine and meso-diaminopimelic acid. This group of bacterial sequences belong to the MEROPS peptidase family M20 (clan MH), subfamily M20A (non-peptidase homologs). ; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=59.06 E-value=6 Score=20.46 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred HCCCCCEEEECCC---HHHHHHHHHHHHHHHCCCEEEEEECH-HHHHHHH-H-HCC-CCCCC-CCC-CCEEEEEECCHHC
Q ss_conf 3899789988791---78999999999987328704896188-9999998-7-315-78655-100-8800798633000
Q gi|254781054|r 17 YVVDGMTLGMGTG---STAKEFMILLADKIANGFRVQVIPSS-RNTENFC-K-IHH-IPLHS-PED-VSSVDLSIDGFDE 87 (231)
Q Consensus 17 ~v~~gmviGlGtG---STv~~~i~~L~~~~~~~~~i~~v~tS-~~t~~~a-~-~~g-i~~~~-l~~-~~~iDi~iDGaDe 87 (231)
.+++|+.=|=|+= +-+++||.+--+-++++.+.++.+=| .-|+.+= . ..| ..++. |.+ -..||.||=|==.
T Consensus 89 ~~~dG~lYGRGAaDMKGs~Aafv~AaerFv~~~pdhkGa~islLiTSDEEG~A~dGT~~vve~L~~r~~~IDyc~VGEPs 168 (383)
T TIGR01246 89 VERDGKLYGRGAADMKGSLAAFVVAAERFVKKNPDHKGASISLLITSDEEGEAIDGTKKVVETLMARDELIDYCIVGEPS 168 (383)
T ss_pred EEECCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 46212176265621467899999999999984777784053443330001331136889999999725899789860653
Q ss_pred CCCC-CEEEECC-CHH------------------------HHHHHHHHHHHCCEEEEE----EHHHC-CCCC--CCC---
Q ss_conf 4766-0588316-577------------------------777879986102269996----23035-1345--578---
Q gi|254781054|r 88 IDSR-LRLIKGY-GGA------------------------LLREKIIAHAASRFIVIG----DESKR-VDFL--GRG--- 131 (231)
Q Consensus 88 vd~~-l~lIKGg-GgA------------------------l~rEKiva~~a~~~I~i~----D~sK~-v~~L--g~~--- 131 (231)
=... +++||=| =|. |.-=++|+..+..-+==- -.|++ +..+ |..
T Consensus 169 s~k~~GD~iK~GRRGSi~g~L~i~G~QGHVAYPh~A~NP~H~~~p~L~~L~~~~lD~G~e~F~ptsl~I~NI~aGtG~~N 248 (383)
T TIGR01246 169 SVKKLGDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPVHKAAPVLAELTAIKLDEGNEFFPPTSLQITNIHAGTGANN 248 (383)
T ss_pred CCCCCCCEEEECCCEEEEEEEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf 51116886784231135444789887511046454158703699999998611288963435897532245578889887
Q ss_pred CCCEEE-EEC--------CHHHHHHHHHHHHHHC----CCCCEEEEEECCCCCEECC-CCCEEEEECCCCCC-----CHH
Q ss_conf 872678-725--------7589999998632214----8985037722588636257-88889982079868-----989
Q gi|254781054|r 132 MLPIEI-DQF--------GVNKTLSALKEVASCF----GLNEELRLRRNGSGLFVSD-GGNYIVDAFFGFIP-----DPQ 192 (231)
Q Consensus 132 plPVEV-~p~--------~~~~v~~~l~~~~~~~----G~~~~lR~~~~~~gp~iTD-nGN~IlD~~~~~i~-----dp~ 192 (231)
-+|=|. +.| ..+.+.++++++++.+ |.+++|.+...+. ||+|+ |-|-++|.....|+ .|+
T Consensus 249 VIPg~L~v~FN~Rfs~e~~~e~~k~~v~~il~~hCkeY~l~Y~lew~~Sg~-pFlT~P~~g~l~~~~~~~i~~~~~~~P~ 327 (383)
T TIGR01246 249 VIPGELKVQFNIRFSTEVSEETLKSRVEAILDQHCKEYGLDYDLEWSLSGE-PFLTNPIDGKLIDKVREAIEETNGIKPE 327 (383)
T ss_pred CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 661112001341028667717899999999974220038841698721585-5278888763899999999997086755
Q ss_pred -------HHHHHHHCC-CCEEECCEECCCCCEE
Q ss_conf -------999996279-9686648024767789
Q gi|254781054|r 193 -------IISGELCNI-PGVIEHGLFINMVDCA 217 (231)
Q Consensus 193 -------~le~~L~~I-pGVVe~GlF~~~~d~v 217 (231)
--.+.++.+ .-|||=|+..++..+|
T Consensus 328 lsT~GGTSDgRFia~~G~~vVE~G~~N~~IHkv 360 (383)
T TIGR01246 328 LSTSGGTSDGRFIALMGAEVVELGPVNATIHKV 360 (383)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEE
T ss_conf 347898716999997549189884557830422
No 65
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=58.86 E-value=6.8 Score=20.12 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCCEEEEEEC--HHHHHHHHHHCCCCCCC-CCCCC-EEEEEECCHHCCCCCCEEEECCCHHHHHHHHH
Q ss_conf 2870489618--89999998731578655-10088-00798633000476605883165777778799
Q gi|254781054|r 45 NGFRVQVIPS--SRNTENFCKIHHIPLHS-PEDVS-SVDLSIDGFDEIDSRLRLIKGYGGALLREKII 108 (231)
Q Consensus 45 ~~~~i~~v~t--S~~t~~~a~~~gi~~~~-l~~~~-~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiv 108 (231)
+++...++=. |.+|+.+|+.+|+|+.. .++++ .||+|= -| =.-.|-||-|.-+-+-++
T Consensus 36 ~r~~L~GlLAqGS~RSR~LA~~lGvpLy~~ve~lp~~~~~AC----vv--vRSa~~Gg~G~~LA~aLL 97 (378)
T TIGR01761 36 ERFELAGLLAQGSERSRALAHRLGVPLYSEVEELPDDIDIAC----VV--VRSAIVGGKGSELARALL 97 (378)
T ss_pred CCCEEEEEEHHCCHHHHHHHHHHCCCCCCCHHHCCCCCCEEE----EE--EEEEEECCCCHHHHHHHH
T ss_conf 773244110010368999999809841067100468875558----88--522531797258999998
No 66
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=58.17 E-value=15 Score=17.96 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=7.4
Q ss_pred CCCHHHHHHHHHCCCCE
Q ss_conf 68989999996279968
Q gi|254781054|r 188 IPDPQIISGELCNIPGV 204 (231)
Q Consensus 188 i~dp~~le~~L~~IpGV 204 (231)
+..|+-++.-.+..|.|
T Consensus 160 ias~~Gi~~v~~~~P~v 176 (208)
T PRK00129 160 VAAPEGIKALEEAHPDV 176 (208)
T ss_pred EECHHHHHHHHHHCCCC
T ss_conf 96489999999878797
No 67
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=58.04 E-value=16 Score=17.78 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=71.4
Q ss_pred HHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCCCCC-CCCCEEEEEECC-HHC-
Q ss_conf 999983899789988791789999999999873-2870489618899999987315786551-008800798633-000-
Q gi|254781054|r 12 RRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFCKIHHIPLHSP-EDVSSVDLSIDG-FDE- 87 (231)
Q Consensus 12 ~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a~~~gi~~~~l-~~~~~iDi~iDG-aDe- 87 (231)
..+...+.+-..|=+=|+..|.+|.+.+.+.-. ......+++-...|+..++++|++.... ...+. +| ++.
T Consensus 41 ~~~~~~l~~~d~iiftS~naV~~~~~~l~~~~~~~~~~~~~~aVG~~Ta~~l~~~g~~~~~~~~~~~s-----e~L~~~~ 115 (239)
T cd06578 41 DAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGDS-----EGLLELL 115 (239)
T ss_pred HHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHCCCCEEECCHHHHHHHHHCCCCCEECCCCCCH-----HHHHHHH
T ss_conf 99986145789999968899999999998617301136868844889999999729985577888999-----9999999
Q ss_pred ---CCCCCEEEECCCH---HHHHHHHHHHHHCCEEEEEEHHHCCCCC----CCC-CCCEEEEECCHHHHHHHHHHHH
Q ss_conf ---4766058831657---7777879986102269996230351345----578-8726787257589999998632
Q gi|254781054|r 88 ---IDSRLRLIKGYGG---ALLREKIIAHAASRFIVIGDESKRVDFL----GRG-MLPIEIDQFGVNKTLSALKEVA 153 (231)
Q Consensus 88 ---vd~~l~lIKGgGg---Al~rEKiva~~a~~~I~i~D~sK~v~~L----g~~-plPVEV~p~~~~~v~~~l~~~~ 153 (231)
-.++...+.+.|+ ..+.+.+-.....-.-+.+=+++..+.. ... .-.+.++.|......+.+-+.+
T Consensus 116 ~~~~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~i~~~~~~~i~ftS~~~~~~~~~~~ 192 (239)
T cd06578 116 ELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTSPSTVRNLLELL 192 (239)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf 87346898699984787756899999978986789988665178888899999974898899990999999999986
No 68
>PRK04457 spermidine synthase; Provisional
Probab=56.77 E-value=17 Score=17.65 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=41.2
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHC-CCCCCCCCCCCEEEEEE-CCHHCC
Q ss_conf 3899789988791789999999999873287048961889999998731-57865510088007986-330004
Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH-HIPLHSPEDVSSVDLSI-DGFDEI 88 (231)
Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~-gi~~~~l~~~~~iDi~i-DGaDev 88 (231)
..+.-.+||||+||.++++.+.+. ...+++|--..+--..|+++ .+|- +-+++.+.+ ||++.+
T Consensus 66 ~Pk~vl~iGLGgGsl~k~~~~~~P-----~~~i~~VEIdp~Vi~vAr~~F~lP~----dd~Rl~V~~~Dg~~fv 130 (262)
T PRK04457 66 RPQHILQIGLGGGSFAKFIDTYLP-----DTRQTAVEINPQVIAVARNHFELPF----EDEKFEIIEADGAEYI 130 (262)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC-----CCEEEEEECCHHHHHHHHHHCCCCC----CCCCEEEEECCHHHHH
T ss_conf 978699992570199999998398-----6758999878899999998657999----9972699955389998
No 69
>pfam01182 Glucosamine_iso Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase.
Probab=55.30 E-value=15 Score=18.03 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHCCC---CCEEEECCCHHHHHHHHHHHHHHHCC
Q ss_conf 983899---78998879178999999999987328
Q gi|254781054|r 15 IQYVVD---GMTLGMGTGSTAKEFMILLADKIANG 46 (231)
Q Consensus 15 ~~~v~~---gmviGlGtGSTv~~~i~~L~~~~~~~ 46 (231)
.++.+. -.|+||.||||-.-+-+.|++..+++
T Consensus 11 ~~~~~~~~k~~vlgLatG~TP~~~Y~~L~~~~~~~ 45 (236)
T pfam01182 11 NSFKPTAERPFVLGLPTGSTPLGTYKKLIEAYKAG 45 (236)
T ss_pred HHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 96198999987998389878899999999999817
No 70
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=55.27 E-value=18 Score=17.50 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=35.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEECH-HHHHHHHHHCCCCCCCCCCC
Q ss_conf 99789988791789999999999873287-04896188-99999987315786551008
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGF-RVQVIPSS-RNTENFCKIHHIPLHSPEDV 75 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS-~~t~~~a~~~gi~~~~l~~~ 75 (231)
.+-.++=+|+|.+....+++|.++ |. +++++.-| .+...++.++|....++++.
T Consensus 181 ~~~~vlviGaGem~~l~~k~L~~~---g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l 236 (429)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRTLERAEELAEEFGAEAIPLEEL 236 (429)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHCCCEEECHHHH
T ss_conf 206599976748999999999855---99849997586778999999759889749999
No 71
>KOG2555 consensus
Probab=55.27 E-value=9.3 Score=19.30 Aligned_cols=109 Identities=24% Similarity=0.238 Sum_probs=52.2
Q ss_pred HHHHHHHCCCCCEEEECCCHHHHH----------------HHHHHHHHHHCC-C--EEEEEECHH-HHHHHHHHCCCCCC
Q ss_conf 999998389978998879178999----------------999999987328-7--048961889-99999873157865
Q gi|254781054|r 11 ARRAIQYVVDGMTLGMGTGSTAKE----------------FMILLADKIANG-F--RVQVIPSSR-NTENFCKIHHIPLH 70 (231)
Q Consensus 11 a~~A~~~v~~gmviGlGtGSTv~~----------------~i~~L~~~~~~~-~--~i~~v~tS~-~t~~~a~~~gi~~~ 70 (231)
..-|-.+++-|..+ ++||-|++. |=+.|+-|++.. . +--+.+--. .-+.-+++++|..+
T Consensus 18 l~La~gL~~~g~~l-vaSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILARdiesd~kdL~e~~i~~v 96 (588)
T KOG2555 18 LDLAKGLVELGVTL-VASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILARDIESDEKDLKEQGIDKV 96 (588)
T ss_pred HHHHHHHHHCCCEE-EECCCHHHHHHHCCCCCCHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCEE
T ss_conf 88875788648289-94286177798679850008764288587487110026410025331457002889987488747
Q ss_pred CC---------CCCCEEEEEECCH-HCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC
Q ss_conf 51---------0088007986330-00476605883165777778799861022699962303513455
Q gi|254781054|r 71 SP---------EDVSSVDLSIDGF-DEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG 129 (231)
Q Consensus 71 ~l---------~~~~~iDi~iDGa-Devd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg 129 (231)
+. +.+..++++|.-| .+|| =||-.|+| -.|.+-.+.-+++|..-+...|.
T Consensus 97 dvVVcNLYPF~etVa~pgvtveeaVEnID-------IGGvTLLR--AAAKNH~rVtiv~dp~DY~~vls 156 (588)
T KOG2555 97 DVVVCNLYPFKETVAKPGVTVEEAVENID-------IGGVTLLR--AAAKNHARVTIVCDPADYDAVLS 156 (588)
T ss_pred EEEEEECCCHHHHHCCCCCCHHHHHHHCC-------CCCHHHHH--HHHHCCCCEEEEECHHHHHHHHH
T ss_conf 79998240137651689976787766426-------55299999--98735771799956367899999
No 72
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family; InterPro: IPR011925 This entry describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC .; GO: 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=54.81 E-value=18 Score=17.45 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=46.3
Q ss_pred CCCCEEEEEECCCCCEECCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEECCEECCCCCEEEEECC
Q ss_conf 898503772258863625788889982079-868989999996279968664802476778999779
Q gi|254781054|r 157 GLNEELRLRRNGSGLFVSDGGNYIVDAFFG-FIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTS 222 (231)
Q Consensus 157 G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~-~i~dp~~le~~L~~IpGVVe~GlF~~~~d~viv~~~ 222 (231)
|++.++|.| ++.=++|.++--.-. ++.|+.++.+++.+.|||+..--|.+. .+++..+
T Consensus 47 GFe~eL~~r------iLg~~PH~~~~~~~~~~~~~~~~~~~~~~~~pgv~~aaP~v~~--~~lv~~~ 105 (414)
T TIGR02212 47 GFERELRQR------ILGVIPHAIIESKQNAPISDWQELLETIEKNPGVKAAAPIVSG--QALVQSA 105 (414)
T ss_pred HHHHHHHCC------CEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE--EEEEEEC
T ss_conf 679988207------4101261888347898998989999999728980688546641--4899827
No 73
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=53.50 E-value=19 Score=17.32 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=10.0
Q ss_pred CEEEEEECCHHCCCCCCE
Q ss_conf 800798633000476605
Q gi|254781054|r 76 SSVDLSIDGFDEIDSRLR 93 (231)
Q Consensus 76 ~~iDi~iDGaDevd~~l~ 93 (231)
..+|.++-|.=|||..+|
T Consensus 361 gglD~a~LgfaqvD~~GN 378 (527)
T COG4670 361 GGLDAAYLGFAQVDRHGN 378 (527)
T ss_pred CCHHHHHHHHHHCCCCCC
T ss_conf 741254421441057785
No 74
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=53.28 E-value=19 Score=17.30 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHH--HCCCCCE---EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH----HCCCCCCCCCCC
Q ss_conf 999999999998--3899789---9887917899999999998732870489618899999987----315786551008
Q gi|254781054|r 5 QMKRNAARRAIQ--YVVDGMT---LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK----IHHIPLHSPEDV 75 (231)
Q Consensus 5 ~~K~~~a~~A~~--~v~~gmv---iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~----~~gi~~~~l~~~ 75 (231)
|.-.+.-+..++ .+++||. ||=|-|+++.+..++- +-++.+++-|..-...++ +.|++
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y------~v~V~GvTlS~~Q~~~~~~r~~~~gl~------- 121 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY------GVTVVGVTLSEEQLAYAEKRIAARGLE------- 121 (283)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHCCCC-------
T ss_conf 9999999999975699999989874788449999999984------997999668999999999999975997-------
Q ss_pred CEEEEEECCHHCCCCCCEEEECCCH--HHHHHHHHHHHHCCEEEEEEHHHCCC-CCC-CC-CCCEEEEECCHHHHHHHHH
Q ss_conf 8007986330004766058831657--77778799861022699962303513-455-78-8726787257589999998
Q gi|254781054|r 76 SSVDLSIDGFDEIDSRLRLIKGYGG--ALLREKIIAHAASRFIVIGDESKRVD-FLG-RG-MLPIEIDQFGVNKTLSALK 150 (231)
Q Consensus 76 ~~iDi~iDGaDevd~~l~lIKGgGg--Al~rEKiva~~a~~~I~i~D~sK~v~-~Lg-~~-plPVEV~p~~~~~v~~~l~ 150 (231)
+++++-.-+--.++..++-|=.=|. ..-.|..=++.++-+=++.+..++.- .++ .. +-+ ....-|.
T Consensus 122 ~~v~v~l~d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---------~~~~~i~ 192 (283)
T COG2230 122 DNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---------RFPDFID 192 (283)
T ss_pred CCCEEEECCCCCCCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---------CCHHHHH
T ss_conf 6607996562103243420556006887371028999999996459996599999667885544---------3327899
Q ss_pred HHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCC
Q ss_conf 6322148985037722588636257888899820798689
Q gi|254781054|r 151 EVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPD 190 (231)
Q Consensus 151 ~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~d 190 (231)
+..-.-|.-|.+..-. ...++.|+.+.|+.......
T Consensus 193 ~yiFPgG~lPs~~~i~----~~~~~~~~~v~~~~~~~~hY 228 (283)
T COG2230 193 KYIFPGGELPSISEIL----ELASEAGFVVLDVESLRPHY 228 (283)
T ss_pred HHCCCCCCCCCHHHHH----HHHHHCCCEEEHHHHHCHHH
T ss_conf 8578998489779999----98875686884276406778
No 75
>PRK08577 hypothetical protein; Provisional
Probab=53.02 E-value=20 Score=17.27 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCEEEEEEHHHCCCCCCCCCCC------EEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCC--CEEEEEC
Q ss_conf 2269996230351345578872------6787257589999998632214898503772258863625788--8899820
Q gi|254781054|r 113 SRFIVIGDESKRVDFLGRGMLP------IEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGG--NYIVDAF 184 (231)
Q Consensus 113 ~~~I~i~D~sK~v~~Lg~~plP------VEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnG--N~IlD~~ 184 (231)
..|++++|.+|.-=++-.-|+| +|++---.+-++..+...+..+|.+--...+..= ---.++ -.|+|+.
T Consensus 31 ~y~LliaDtd~kEi~i~pi~~~~kkl~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l---~r~e~ae~v~IvDvS 107 (135)
T PRK08577 31 MYFLLIADTDKKEIHIEPIALPGKKLVELELVVEDRPGVLAKISGLLAEHGVDILATECEEL---KRGELAECVIIVDVS 107 (135)
T ss_pred CEEEEEEECCCCEEEEEECCCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEE---ECCCCEEEEEEEECC
T ss_conf 58999972787649999726888558999999945975699999999874853111021100---037610089999854
Q ss_pred CCCCCCHHHHHHHHHCCCCEEECCE
Q ss_conf 7986898999999627996866480
Q gi|254781054|r 185 FGFIPDPQIISGELCNIPGVIEHGL 209 (231)
Q Consensus 185 ~~~i~dp~~le~~L~~IpGVVe~Gl 209 (231)
--.+ ||.+++.+|+.+-.|-|.-+
T Consensus 108 ~~~~-~~~el~~~Lk~le~VkeV~i 131 (135)
T PRK08577 108 KSDI-DLKELEEELKALEEVKEVEI 131 (135)
T ss_pred CCCC-CHHHHHHHHHHCCCEEEEEE
T ss_conf 5779-99999999872453148999
No 76
>PRK02186 argininosuccinate lyase; Provisional
Probab=51.60 E-value=20 Score=17.18 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECC
Q ss_conf 8999999863221489850377225886362578888998207
Q gi|254781054|r 143 NKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFF 185 (231)
Q Consensus 143 ~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~ 185 (231)
..+.+.|+ .+|+.+-.--.+ ..+|++|-.||.+..
T Consensus 241 d~v~raL~----AlGl~~GpAHTE----vklT~~GPvVIEINP 275 (892)
T PRK02186 241 RTVLRALD----AVGYAFGPAHTE----LRVRGDTVVIIEINP 275 (892)
T ss_pred HHHHHHHH----HCCCCCCCCEEE----EEEECCCEEEEEECC
T ss_conf 99999999----708666883289----999389738999788
No 77
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=50.64 E-value=21 Score=17.04 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 899999999999838--99789988791789999999999873
Q gi|254781054|r 4 LQMKRNAARRAIQYV--VDGMTLGMGTGSTAKEFMILLADKIA 44 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v--~~gmviGlGtGSTv~~~i~~L~~~~~ 44 (231)
++|-+.+|+.-.+.| ++.-+|+|-+|||-..+.+.|++..+
T Consensus 1 e~ls~~aa~~i~~~i~~~~~~~ialsGG~tP~~~y~~L~~~~~ 43 (232)
T cd01399 1 EEMSEAAAELIAELIREKPPAVLGLATGSTPLGVYEELIELHK 43 (232)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9799999999999999779869998998789999999999886
No 78
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=49.87 E-value=7.6 Score=19.83 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCC
Q ss_conf 58999999863221489850377225886362578888998207986898999999627996866480247677
Q gi|254781054|r 142 VNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVD 215 (231)
Q Consensus 142 ~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d 215 (231)
.....+...+.+..+|++.--|.- ++++++|++. - .++|.+||--.+++|..++.
T Consensus 229 ~~~i~~~a~~~~~aLg~~g~aRvD-----f~~~~~g~~~------------~--lEiNt~PGmT~~Sl~P~~a~ 283 (304)
T PRK01372 229 EAELQALALRAYKALGCRGWGRVD-----FMLDEDGKPY------------L--LEVNTSPGMTSHSLVPMAAR 283 (304)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-----EEEECCCCEE------------E--EEECCCCCCCCCCHHHHHHH
T ss_conf 999999999999984997369889-----9990799789------------9--98339999874158999999
No 79
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=48.30 E-value=23 Score=16.81 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH----C--CCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 9999999999983----8--997899887917899999999998
Q gi|254781054|r 5 QMKRNAARRAIQY----V--VDGMTLGMGTGSTAKEFMILLADK 42 (231)
Q Consensus 5 ~~K~~~a~~A~~~----v--~~gmviGlGtGSTv~~~i~~L~~~ 42 (231)
++-+.+|+..++. + ++.-+|+|-+|||...+.+.|+++
T Consensus 2 ~la~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~ 45 (219)
T cd01400 2 ALAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAA 45 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHC
T ss_conf 79999999999999999997798899984897799999998554
No 80
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=47.74 E-value=24 Score=16.76 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 78999999999998389978998879178999999999987328704896188999999873157865510088007986
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSI 82 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~i 82 (231)
..++|+..| +...+.+.++ -+|.|||- +|..+......+..+...||=..-+..|+..|.++..... ...+-..
T Consensus 42 ~~~Lr~~iA--~~~~v~~~~I-~vgnGs~E--lI~~l~~~~~~~~~~i~~PtF~~Y~~~a~~~g~~~~~vp~-~~~~~~~ 115 (332)
T PRK06425 42 YTDIEDQIK--IYTQGLKIKV-LIGPGLTH--FIYRLLSYINVGNIIIVEPNFNEYKGYAFTHGIRISALPF-NLINNNP 115 (332)
T ss_pred HHHHHHHHH--HHHCCCHHHE-EECCCHHH--HHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCEEEEECC-CCCCCCH
T ss_conf 699999999--8869686739-98220999--9999999868999899688889999999986998999574-3332588
Q ss_pred CCHHCCCCCCEEEEC----CCHHHHHHHH---HHHHHC-CEEEEEEHHH
Q ss_conf 330004766058831----6577777879---986102-2699962303
Q gi|254781054|r 83 DGFDEIDSRLRLIKG----YGGALLREKI---IAHAAS-RFIVIGDESK 123 (231)
Q Consensus 83 DGaDevd~~l~lIKG----gGgAl~rEKi---va~~a~-~~I~i~D~sK 123 (231)
+=..+.++++-.|=- -|-.+-++.+ +....+ .-++|+||+=
T Consensus 116 ~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~~vvvDEAY 164 (332)
T PRK06425 116 EILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAF 164 (332)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECHH
T ss_conf 8884589898999418172013489999999999605269799996413
No 81
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=47.72 E-value=24 Score=16.75 Aligned_cols=127 Identities=18% Similarity=0.161 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEE-CCCH-------HHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHCCCCC
Q ss_conf 999999999983899789988-7917-------899999999998732870489618--------899999987315786
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMTLGM-GTGS-------TAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIHHIPL 69 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmviGl-GtGS-------Tv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~gi~~ 69 (231)
.-+..++..++++++|.++-- -||| |+--.|..+. +.|..+.++.+ +.-|+..+.+.|||+
T Consensus 146 ~~~~iG~~Ga~li~~g~ILTHCNaGaLAT~g~GTAlgvir~a~---~~gk~~~V~~~ETRP~lQGaRLTa~EL~~~gIp~ 222 (356)
T PRK08334 146 ANLRMGHYGAEVLPEGNVLTHCNAGSLATVHLGTVGAVVRVMH---KDGTLKLLWLDETRPVLQGARLSAWEYSYDGLNV 222 (356)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCHHHHHHHHH---HCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCE
T ss_conf 9999999999766799876215874465435533699999999---8699349995788603354025499986658955
Q ss_pred CCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHH-HCCEEEEEEHHHCCCCCCC-CCCCEEE
Q ss_conf 551008--------800798633000476605883165777778799861-0226999623035134557-8872678
Q gi|254781054|r 70 HSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHA-ASRFIVIGDESKRVDFLGR-GMLPIEI 137 (231)
Q Consensus 70 ~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~-a~~~I~i~D~sK~v~~Lg~-~plPVEV 137 (231)
.-+.+. ..+|..|=|||-|-.|+..+--=|--.+ -++|.. ---|.+.+-.|++=..+.. ..+|||-
T Consensus 223 tlI~Dnma~~lM~~g~Id~vivGADri~~nG~vaNKIGTy~~--A~~A~~~~iPfyvaap~st~D~~~~~g~~i~IEe 298 (356)
T PRK08334 223 KLIADNAAAFVMQQGKVDAIIVGADRIVANGDFANKIGTYML--AVLAKEHGIPFFTVAPLSSIDMSLKSGKEIPIEE 298 (356)
T ss_pred EEEEHHHHHHHHHHCCCCEEEECCCEEECCCEEEEHHHHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 898540699998638847999865344427637721215899--9999983997799802476688878867444545
No 82
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=47.60 E-value=24 Score=16.74 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=67.6
Q ss_pred CEEEEEECHHHH----HHHHHHCCCCCCCCCCC--CE-EEEEECCHHCCC-CCCEEEECCCHHHHHHHHHHHHHCCEEEE
Q ss_conf 704896188999----99987315786551008--80-079863300047-66058831657777787998610226999
Q gi|254781054|r 47 FRVQVIPSSRNT----ENFCKIHHIPLHSPEDV--SS-VDLSIDGFDEID-SRLRLIKGYGGALLREKIIAHAASRFIVI 118 (231)
Q Consensus 47 ~~i~~v~tS~~t----~~~a~~~gi~~~~l~~~--~~-iDi~iDGaDevd-~~l~lIKGgGgAl~rEKiva~~a~~~I~i 118 (231)
.++.+=+||-.. ...++++|+.+++|... +. .==++..-+..+ +|.|||-+||-|-.- |++.-++-. =
T Consensus 65 idiVFDATSA~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiP--iv~avsrv~--~ 140 (285)
T TIGR03215 65 IDIVFDATSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIP--IVAAISRVA--P 140 (285)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCHHHHCCCCCCCEEEECCCCCCH--HHHHHHHCC--C
T ss_conf 788996698467999999999759979978810159754555387895468886337655843018--999875035--4
Q ss_pred EEHHHCCCCCC-CCCCC---EEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHH
Q ss_conf 62303513455-78872---678725758999999863221489850377225886362578888998207986898999
Q gi|254781054|r 119 GDESKRVDFLG-RGMLP---IEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQII 194 (231)
Q Consensus 119 ~D~sK~v~~Lg-~~plP---VEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~l 194 (231)
+..-..|...- +-.=| .-+..| ...|.+.++++...--+++-+-.+.... |. ..-|-|+ |...+ .|...+
T Consensus 141 V~Y~EiVasiaS~SaGPgTR~NIDEf-~~TT~~Ai~~~gGa~~~KaIiilNPA~P-p~--~Mr~Tv~-~~~~~-~d~~~i 214 (285)
T TIGR03215 141 VHYAEIVASIASRSAGPGTRANIDEF-TETTSRALEQVGGAKKGKAIIILNPAEP-PL--MMRDTIY-CLVED-PDEDAI 214 (285)
T ss_pred CCEEEEEEEEECCCCCHHHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEECCCCC-CC--CCEEEEE-EECCC-CCHHHH
T ss_conf 32799887640036782566536888-9988999998659654128999579899-84--3001689-96588-998999
Q ss_pred HHHHHC
Q ss_conf 999627
Q gi|254781054|r 195 SGELCN 200 (231)
Q Consensus 195 e~~L~~ 200 (231)
...+..
T Consensus 215 ~~sv~~ 220 (285)
T TIGR03215 215 EASVEE 220 (285)
T ss_pred HHHHHH
T ss_conf 999999
No 83
>PRK10586 hypothetical protein; Provisional
Probab=47.21 E-value=24 Score=16.71 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH
Q ss_conf 978998879178999999999987328704896188999999873
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI 64 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~ 64 (231)
..++||+|.|.+..-. +..+.+ .+..+..+||.-.|-.-+..
T Consensus 87 ~d~IigvGGGK~iDta-K~vA~~--~~~pvv~vPTiAStcAp~S~ 128 (362)
T PRK10586 87 RQVVIGVGGGALLDTA-KALARR--LGLPFVAIPTIAATCAAWTP 128 (362)
T ss_pred CCEEEEECCCHHHHHH-HHHHHH--CCCCEEEEECHHCCCCCCCC
T ss_conf 8789995571999999-999998--19998996051105766661
No 84
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase; InterPro: IPR004631 4-aminobutyrate aminotransferase eukaryotic (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known eukaryotic examples of the enzyme. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=46.85 E-value=9.6 Score=19.22 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=18.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 57888899820798689899999962799
Q gi|254781054|r 174 SDGGNYIVDAFFGFIPDPQIISGELCNIP 202 (231)
Q Consensus 174 TDnGN~IlD~~~~~i~dp~~le~~L~~Ip 202 (231)
-.-||||.|+.....-|. =.+|.+||
T Consensus 47 kS~GNYl~DvDGN~lLDl---YsQIsSiP 72 (469)
T TIGR00699 47 KSVGNYLVDVDGNVLLDL---YSQISSIP 72 (469)
T ss_pred HCCCCEEEEECCCHHHHH---HHHHHHCC
T ss_conf 115764563143047888---87775212
No 85
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=46.66 E-value=25 Score=16.65 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=25.1
Q ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEEEE-CHHHHHHHHHHCCCCCCC
Q ss_conf 88791789999999999873287048961-889999998731578655
Q gi|254781054|r 25 GMGTGSTAKEFMILLADKIANGFRVQVIP-SSRNTENFCKIHHIPLHS 71 (231)
Q Consensus 25 GlGtGSTv~~~i~~L~~~~~~~~~i~~v~-tS~~t~~~a~~~gi~~~~ 71 (231)
=|+.=+-+.+..+...+ ....+-.+|+ -|.+....|+++|++++-
T Consensus 22 ~I~G~pmI~~v~~~a~~--s~~~d~V~VATDd~eI~~~~~~~g~~~im 67 (239)
T cd02517 22 DIAGKPMIQHVYERAKK--AKGLDEVVVATDDERIADAVESFGGKVVM 67 (239)
T ss_pred HHCCCCHHHHHHHHHHH--CCCCCEEEEECCCHHHHHHHCCCCCCCCC
T ss_conf 53995989999999996--69988499964826555332147974010
No 86
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=46.55 E-value=25 Score=16.64 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHCCCC------CEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 87899999999999838997------89988791789999999999873
Q gi|254781054|r 2 DALQMKRNAARRAIQYVVDG------MTLGMGTGSTAKEFMILLADKIA 44 (231)
Q Consensus 2 ~~~~~K~~~a~~A~~~v~~g------mviGlGtGSTv~~~i~~L~~~~~ 44 (231)
|.+++-+.+|..-.+.++.+ -+|+|-||||-..+.+.|.++.+
T Consensus 8 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~ 56 (238)
T COG0363 8 DAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQ 56 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999999999999974020167579997689887999999996325
No 87
>KOG0326 consensus
Probab=46.00 E-value=25 Score=16.59 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=56.3
Q ss_pred ECCCHHHHHHHHHHHHHHH-CCCE---EEEEEC---HHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH------CCCCCC
Q ss_conf 8791789999999999873-2870---489618---89999998731578655100880079863300------047660
Q gi|254781054|r 26 MGTGSTAKEFMILLADKIA-NGFR---VQVIPS---SRNTENFCKIHHIPLHSPEDVSSVDLSIDGFD------EIDSRL 92 (231)
Q Consensus 26 lGtGSTv~~~i~~L~~~~~-~~~~---i~~v~t---S~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaD------evd~~l 92 (231)
=|||-|..|.|..| +++. +... +..||| ..+|++.|++++=.+-- .+-++.-|.. .++..-
T Consensus 131 NGTGKT~a~~IP~L-ekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i-----~vmvttGGT~lrDDI~Rl~~~V 204 (459)
T KOG0326 131 NGTGKTAAYCIPVL-EKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGI-----KVMVTTGGTSLRDDIMRLNQTV 204 (459)
T ss_pred CCCCCCCCEECHHH-HHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCE-----EEEEECCCCCCCCCEEEECCCE
T ss_conf 89887330441256-65282210044799961632667887999998604684-----9999438865443205615826
Q ss_pred EEEECCCH-HH-HHHHHHHHHHCCEEEEEEHH
Q ss_conf 58831657-77-77879986102269996230
Q gi|254781054|r 93 RLIKGYGG-AL-LREKIIAHAASRFIVIGDES 122 (231)
Q Consensus 93 ~lIKGgGg-Al-~rEKiva~~a~~~I~i~D~s 122 (231)
.++-|--| .| +.||=||..|+..+++.||.
T Consensus 205 H~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326 205 HLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEECCCHHHHHHHHCCCCCCHHCEEEEECHH
T ss_conf 99972871788888626522001147874105
No 88
>CHL00194 ycf39 Ycf39; Provisional
Probab=45.63 E-value=12 Score=18.59 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC--CCCCCCEEEEEECCHHCC
Q ss_conf 79178999999999987328704896188999999873157865--510088007986330004
Q gi|254781054|r 27 GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH--SPEDVSSVDLSIDGFDEI 88 (231)
Q Consensus 27 GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~--~l~~~~~iDi~iDGaDev 88 (231)
|||.+=...++.|.+ .|..+++..-+......++..|..+. ++.+-+.+.=+++|+|-|
T Consensus 8 ATG~lGr~vVr~Ll~---~G~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaV 68 (319)
T CHL00194 8 ATGTLGRQIVRRALD---EGYQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAI 68 (319)
T ss_pred CCCHHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEE
T ss_conf 985899999999996---8890899957867632342159679994278877899996599679
No 89
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=45.47 E-value=26 Score=16.54 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHH--HCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCC
Q ss_conf 999998--389978-998879178999999999987328704896188999999873157865
Q gi|254781054|r 11 ARRAIQ--YVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH 70 (231)
Q Consensus 11 a~~A~~--~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~ 70 (231)
+..|++ .+++|. ++=.|.+..+-.+.-.+++. .|..+..+.+|..-...+++.+-.++
T Consensus 151 ~~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlak~--~Ga~vi~v~~~~~k~~~~~~~~~~~i 211 (332)
T PRK13771 151 IYRGLRRAGVSEGETVLVTGAGGGVGIHAVQVAKA--YGAKVIAVTTSESKAKAVGKYADYVI 211 (332)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHCCCEEE
T ss_conf 99999971999999999977877589999999998--69989999499999999985699898
No 90
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=44.88 E-value=26 Score=16.48 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH-HHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 78999999999998389978998879178999999999987328704896188999-99987315786551008800798
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNT-ENFCKIHHIPLHSPEDVSSVDLS 81 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t-~~~a~~~gi~~~~l~~~~~iDi~ 81 (231)
..++|+.+|++ .-+.+.. |-+|.||+- +|..+......+-.+.+..+++.. +..++..|.++....-...-+..
T Consensus 59 ~~~Lr~aiA~~--~gv~~e~-I~~gnGs~E--li~~~~~~~~~~~~v~i~~Ptf~~Y~~~~~~~g~~v~~vpl~~~~~~~ 133 (358)
T PRK07392 59 YRELREALAQH--HQLPPEW-ILPGNGAAE--LLTWAGRELAQLREVYLLTPAFGDYRRALRAFGATVKELPLPLSGEAS 133 (358)
T ss_pred HHHHHHHHHHH--HCCCHHH-EEECCCHHH--HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 89999999998--5958888-987757999--999999997589869995785189999999839889998577555678
Q ss_pred ECCHH---CCCCCCE-EEEC-----CCHHHHHHHHHHHHHCCEEEEEEHHH
Q ss_conf 63300---0476605-8831-----65777778799861022699962303
Q gi|254781054|r 82 IDGFD---EIDSRLR-LIKG-----YGGALLREKIIAHAASRFIVIGDESK 123 (231)
Q Consensus 82 iDGaD---evd~~l~-lIKG-----gGgAl~rEKiva~~a~~~I~i~D~sK 123 (231)
.+-.+ ...+.-. ++=+ -|..+.+|.+.+...+.-++|+||.=
T Consensus 134 ~~~~~~~~~~~~~~~~i~l~nPNNPTG~~~~~~~l~~l~~~~~~vvvDEaY 184 (358)
T PRK07392 134 LTELQLLPPQLTPNDGLLLNNPHNPTGKLWSREAILPLLEQFALVVVDEAF 184 (358)
T ss_pred CCHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 205678875589987899768999977656879999886328999995715
No 91
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=44.66 E-value=27 Score=16.46 Aligned_cols=123 Identities=24% Similarity=0.182 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHCCCCCE------------EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC--------HHHHHHHHHHC
Q ss_conf 999999999983899789------------9887917899999999998732870489618--------89999998731
Q gi|254781054|r 6 MKRNAARRAIQYVVDGMT------------LGMGTGSTAKEFMILLADKIANGFRVQVIPS--------SRNTENFCKIH 65 (231)
Q Consensus 6 ~K~~~a~~A~~~v~~gmv------------iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t--------S~~t~~~a~~~ 65 (231)
.-+..++.-+++++++.. +|.||--- .|+... .+|+.+.+++. |.-|...+.+.
T Consensus 135 ~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlg---viR~a~---~~gk~i~v~a~ETRP~lQGARLTawEL~~~ 208 (346)
T COG0182 135 ANRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALG---VIRSAH---EEGKDIRVFADETRPYLQGARLTAWELVQD 208 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCHHH---HHHHHH---HCCCCEEEEECCCCCCCCCCEEEHHHHHHC
T ss_conf 99999997998703688287341687443257650479---999999---779805998179852445535248888645
Q ss_pred CCCCCCCCCC--------CEEEEEECCHHCCCCCCEE-EECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCCC-CCCC
Q ss_conf 5786551008--------8007986330004766058-831657777787998-610226999623035134557-8872
Q gi|254781054|r 66 HIPLHSPEDV--------SSVDLSIDGFDEIDSRLRL-IKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLGR-GMLP 134 (231)
Q Consensus 66 gi~~~~l~~~--------~~iDi~iDGaDevd~~l~l-IKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg~-~plP 134 (231)
|||+.-..+. ..+|..|=|||-|..|+.. =|=|-- ..-++| ..--.|.+.+--|-.=..+.. -.+|
T Consensus 209 GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY---~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~ 285 (346)
T COG0182 209 GIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTY---QLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIP 285 (346)
T ss_pred CCCEEEEECCHHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHH---HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 98649994448899987478768998342454278421356579---999999874998699746676466667787565
Q ss_pred EEE
Q ss_conf 678
Q gi|254781054|r 135 IEI 137 (231)
Q Consensus 135 VEV 137 (231)
||-
T Consensus 286 IEE 288 (346)
T COG0182 286 IEE 288 (346)
T ss_pred EEE
T ss_conf 020
No 92
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=42.09 E-value=17 Score=17.70 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL 80 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi 80 (231)
||.+++|+.++..+-...+.|++.|.+.-=+++ ..++ +.+-||... ... ++.++.-.+|
T Consensus 1 M~~~~lk~~l~~~~r~l~~~Gl~~g~~GNiS~R---------~~~~--~lItPsG~~-~~~--------l~~~dlv~vd- 59 (215)
T PRK08087 1 MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVR---------YQDG--MLITPTGIP-YEK--------LTESHIVFID- 59 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE---------ECCC--EEEECCCCC-HHH--------CCHHHEEEEC-
T ss_conf 988999999999999999878986788747898---------1798--899789999-355--------8887926456-
Q ss_pred EECCHHCCCCCCEEEECC---CHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC
Q ss_conf 863300047660588316---5777778799861022699962303513455
Q gi|254781054|r 81 SIDGFDEIDSRLRLIKGY---GGALLREKIIAHAASRFIVIGDESKRVDFLG 129 (231)
Q Consensus 81 ~iDGaDevd~~l~lIKGg---GgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg 129 (231)
.||- .+.|. -...+.-.|-....+---++=-++..+..+.
T Consensus 60 -~~G~--------~~~G~~pssE~~~H~~Iyr~rpDv~aVvHtHs~~~ta~s 102 (215)
T PRK08087 60 -GDGK--------HEEGKLPSSEWRFHMAAYQTRPDANAVVHNHAVHCTAVS 102 (215)
T ss_pred -CCCC--------CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf -7787--------367998873599999999839987889984671779899
No 93
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=41.99 E-value=29 Score=16.21 Aligned_cols=56 Identities=7% Similarity=-0.098 Sum_probs=33.8
Q ss_pred HHHHHHH---HCCCCCEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC
Q ss_conf 9999998---3899789988--791789999999999873287048961889999998731578
Q gi|254781054|r 10 AARRAIQ---YVVDGMTLGM--GTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP 68 (231)
Q Consensus 10 ~a~~A~~---~v~~gmviGl--GtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~ 68 (231)
.|..++. .++++.++=+ |+|+-=.+++ .|++. .|.++.+..+|..-...++++|-.
T Consensus 127 Ta~~~l~~~~~~~~g~~vLi~gaaGgVG~~av-QlAk~--~Ga~Vi~t~~s~~k~e~~~~lGA~ 187 (327)
T PRK10754 127 TVYYLLRKTYEIKPDEQFLFHAAAGGVGLIAC-QWAKA--LGAKLIGTVGSAQKAQRALKAGAW 187 (327)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCHHHH-HHHHH--CCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 79887653137899999999817761126899-99998--699999998989999999966999
No 94
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=41.91 E-value=15 Score=17.97 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=4.7
Q ss_pred CCEEEECCCHH
Q ss_conf 78998879178
Q gi|254781054|r 21 GMTLGMGTGST 31 (231)
Q Consensus 21 gmviGlGtGST 31 (231)
.|+|=+|.|||
T Consensus 155 sMvvDIGGGTT 165 (337)
T TIGR00904 155 SMVVDIGGGTT 165 (337)
T ss_pred CEEEECCCCCE
T ss_conf 87898488722
No 95
>pfam01761 DHQ_synthase 3-dehydroquinate synthase. The 3-dehydroquinate synthase EC:4.6.1.3 domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide. 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.
Probab=41.65 E-value=30 Score=16.17 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=28.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHH
Q ss_conf 89978998879178999999999987328704896188999
Q gi|254781054|r 18 VVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNT 58 (231)
Q Consensus 18 v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t 58 (231)
-++.++||+|+|.+.... +..+.....|.....+||+...
T Consensus 79 ~r~d~iiaiGGG~v~D~a-k~~A~~~~rg~~~i~iPTt~~a 118 (310)
T pfam01761 79 TRSDVIIALGGGVIGDLA-GFAAATYMRGIPFIQVPTTLLA 118 (310)
T ss_pred CCCCEEEEECCCCHHHHH-HHHHHHHHCCCCEEEECCHHHH
T ss_conf 977549995496211689-9999999769977986708887
No 96
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=41.29 E-value=30 Score=16.14 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEEEECH
Q ss_conf 99789988791789999999999873-28704896188
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQVIPSS 55 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~v~tS 55 (231)
+.|-.+|+=||-+|..+++ ||++.. .++.|.++.+|
T Consensus 265 eEGiL~GISSGA~vaAAl~-~Ak~~~n~dK~iV~i~Ps 301 (312)
T TIGR01139 265 EEGILVGISSGAAVAAALK-LAKRLENPDKLIVVILPS 301 (312)
T ss_pred HCCEEECCCHHHHHHHHHH-HHHHHCCCCCEEEEEECC
T ss_conf 6780101557899999999-987324889889998278
No 97
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=41.07 E-value=30 Score=16.12 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEEC
Q ss_conf 57888899820798689899999962799686648024
Q gi|254781054|r 174 SDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFI 211 (231)
Q Consensus 174 TDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~ 211 (231)
.-|-+.|+=||.++|..|++.+.-|.+.+|+ ||+|-
T Consensus 210 ~v~~diIvLchGGpI~~P~Da~~vl~~t~~~--~Gf~G 245 (268)
T pfam09370 210 SVNPDVIVLCHGGPIATPEDAQYVLDRTPGC--HGFYG 245 (268)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHCCCCC--CEEEC
T ss_conf 8599869995178889989999999739777--66763
No 98
>KOG0780 consensus
Probab=40.91 E-value=17 Score=17.61 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=58.7
Q ss_pred CEEEE-CCCHHHHHHHHHHHHHH-HCCCEEEEE-------ECHHHHHHHHHHCCCCCCC-CCCCCEEEEEECCHHCCCCC
Q ss_conf 89988-79178999999999987-328704896-------1889999998731578655-10088007986330004766
Q gi|254781054|r 22 MTLGM-GTGSTAKEFMILLADKI-ANGFRVQVI-------PSSRNTENFCKIHHIPLHS-PEDVSSVDLSIDGFDEIDSR 91 (231)
Q Consensus 22 mviGl-GtGSTv~~~i~~L~~~~-~~~~~i~~v-------~tS~~t~~~a~~~gi~~~~-l~~~~~iDi~iDGaDevd~~ 91 (231)
|.+|| |+|-|..+. -|+... +.|.....| ..+-+-.+.|.+.++|... ..+.+..+++-.|.|..-.+
T Consensus 105 mfVGLqG~GKTTtc~--KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780 105 MFVGLQGSGKTTTCT--KLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEECCCCCCCEEHH--HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 998305788630089--999999846872457760224530689999876740770684036655589999999988863
Q ss_pred -CEEEE-CCCHHHHHHHHH---------HHHHCCEEEEEEHH
Q ss_conf -05883-165777778799---------86102269996230
Q gi|254781054|r 92 -LRLIK-GYGGALLREKII---------AHAASRFIVIGDES 122 (231)
Q Consensus 92 -l~lIK-GgGgAl~rEKiv---------a~~a~~~I~i~D~s 122 (231)
+.+|- ---|-|-.|+-+ |..-+..|++.|.|
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 972899827873012489999999998515987389998562
No 99
>pfam08934 Rb_C Rb C-terminal domain. The Rb C-terminal domain is required for high-affinity binding to E2F-DP complexes and for maximal repression of E2F-responsive promoters, thereby acting as a growth suppressor by blocking the G1-S transition of the cell cycle. This domain has a strand-loop-helix structure, which directly interacts with both E2F1 and DP1, followed by a tail segment that lacks regular secondary structure.
Probab=39.76 E-value=28 Score=16.36 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=37.7
Q ss_pred EEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 96188999999873157865510088007986330004766058831657777787998610
Q gi|254781054|r 51 VIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAA 112 (231)
Q Consensus 51 ~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a 112 (231)
-|.+|.++...+...|-. +....++-+-+||.||-|.. |-||-.-+..|+..-.|
T Consensus 80 Mvnssdr~~KR~~d~~~a---pKPLKrLrFD~dGqDEaDgS----K~~ges~l~QKLaEmsS 134 (155)
T pfam08934 80 MVNSSDRSLKRSLDGSSA---PKPLKRLRFDVDGQDEADGS----KHGGESALIQKLAEMSS 134 (155)
T ss_pred HHHHHHHHHHHHHCCCCC---CCCHHHEECCCCCCCCCCCC----CCCCHHHHHHHHHHHHH
T ss_conf 972137877765315889---87366603157787545566----68405599999998763
No 100
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.19 E-value=32 Score=15.94 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=30.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
+++.||.||=.|..-+-++. ..|.+..+.|. +......|.++++|.++
T Consensus 65 p~~~vGaGTVl~~e~~~~a~----~aGA~FiVSP~~~~~v~~~a~~~~i~~iP 113 (212)
T PRK06015 65 EEAIVGAGTILNAKQFEDAA----KAGSRFIVSPGTTQELLAAANDSDVPLLP 113 (212)
T ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 99679542115699999999----84998998589999999999983997737
No 101
>PRK10132 hypothetical protein; Provisional
Probab=37.84 E-value=28 Score=16.28 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 99999999983899789988791789999999999
Q gi|254781054|r 7 KRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLAD 41 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~ 41 (231)
.+.+|..|=+||+++---|+|.|.+|..+|-.|-.
T Consensus 71 ar~aa~~AD~YVrenPW~sVGigAAVGvvlG~LLs 105 (108)
T PRK10132 71 ARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999868888864895047699999999999997
No 102
>KOG2888 consensus
Probab=37.81 E-value=5.4 Score=20.76 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred CCE---EEECCC---HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC-------CCCCCCCCCEEEEEECCHHC
Q ss_conf 789---988791---78999999999987328704896188999999873157-------86551008800798633000
Q gi|254781054|r 21 GMT---LGMGTG---STAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHI-------PLHSPEDVSSVDLSIDGFDE 87 (231)
Q Consensus 21 gmv---iGlGtG---STv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi-------~~~~l~~~~~iDi~iDGaDe 87 (231)
||. =|.|+| ||+.+++-.|-..--..+.+...-.+.++. ....+|+ |-.+|++ ...-|+|.-.|
T Consensus 111 gmCggvRGvgaggivSTAyCLLYklftlklTrKQ~~gllnhtdSp-YIRalGFmYiRYtqpp~dLw~--WyEpyldDdee 187 (453)
T KOG2888 111 GMCGGVRGVGAGGIVSTAYCLLYKLFTLKLTRKQLIGLLNHTDSP-YIRALGFMYIRYTQPPADLWD--WYEPYLDDDEE 187 (453)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHEEEEEEECCCHHHHHH--HHHHHCCCHHH
T ss_conf 444665456767501347999999988886799998775058746-663210047860378068888--76654063643
Q ss_pred CCCCCEEEECCCHHH-HHHHHHHHHHCCEEEEEEHHHCCCCCCCCC-CCEEEEECCHHHHHHHHHHH
Q ss_conf 476605883165777-778799861022699962303513455788-72678725758999999863
Q gi|254781054|r 88 IDSRLRLIKGYGGAL-LREKIIAHAASRFIVIGDESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEV 152 (231)
Q Consensus 88 vd~~l~lIKGgGgAl-~rEKiva~~a~~~I~i~D~sK~v~~Lg~~p-lPVEV~p~~~~~v~~~l~~~ 152 (231)
+|+ |+|||.+ +.--+|-++-.++-| -.+| || +||.| ...+-..|++.
T Consensus 188 idp-----kaggG~vmTiGqmvr~~l~kLdw-------f~TL--FPRIPVPv----qkqId~~ie~r 236 (453)
T KOG2888 188 IDP-----KAGGGDVMTIGQMVRTFLTKLDW-------FSTL--FPRIPVPV----QKQIDEKIEER 236 (453)
T ss_pred CCC-----CCCCCCEEEHHHHHHHHHHHHHH-------HHCC--CCCCCCHH----HHHHHHHHHHC
T ss_conf 487-----67897365699999999964158-------7503--77787417----88899999861
No 103
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=37.50 E-value=34 Score=15.77 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=45.4
Q ss_pred CEEEE-CCCHHHHHHHHHHHHHH-HCCCEEEEEEC-------HHHHHHHHHHCCCCCCCCCCC--CEEEEEECCHHC
Q ss_conf 89988-79178999999999987-32870489618-------899999987315786551008--800798633000
Q gi|254781054|r 22 MTLGM-GTGSTAKEFMILLADKI-ANGFRVQVIPS-------SRNTENFCKIHHIPLHSPEDV--SSVDLSIDGFDE 87 (231)
Q Consensus 22 mviGl-GtGSTv~~~i~~L~~~~-~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~l~~~--~~iDi~iDGaDe 87 (231)
|.+|+ |+|=|+.. --||+.. ++|+++...+. =.|-+.+++++|++++....- +.--++||+-+.
T Consensus 86 l~VGVNG~GKTTTI--aKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~ 160 (284)
T TIGR00064 86 LFVGVNGVGKTTTI--AKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQA 160 (284)
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99844088601028--8999999874990899827524799999999989883875540788988717899998999
No 104
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=37.36 E-value=5 Score=20.95 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=7.8
Q ss_pred CEEEECCCHHHHHHH
Q ss_conf 899887917899999
Q gi|254781054|r 22 MTLGMGTGSTAKEFM 36 (231)
Q Consensus 22 mviGlGtGSTv~~~i 36 (231)
.|||=|=|-+.+..+
T Consensus 80 LvIGGGDGG~lREV~ 94 (284)
T TIGR00417 80 LVIGGGDGGVLREVV 94 (284)
T ss_pred EEEECCCCCEEEEEE
T ss_conf 899638884687887
No 105
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=36.63 E-value=35 Score=15.69 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=29.9
Q ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH
Q ss_conf 38997899887917899999999998732870489618899999987
Q gi|254781054|r 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCK 63 (231)
Q Consensus 17 ~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~ 63 (231)
--+...+||+|.||..... +.++.. .+.-+..|||.-.|-..+.
T Consensus 82 ~~~~D~IiavGGGS~iD~A-Kaia~~--~~~P~i~IPTtAgTgSe~t 125 (366)
T PRK09423 82 ENGCDVIIGIGGGKTLDTA-KAVADY--LGVPVVIVPTIASTDAPCS 125 (366)
T ss_pred HCCCCEEEEECCHHHHHHH-HHHHHH--CCCCEEEECCCCCCCCCCC
T ss_conf 6499989993783887779-999998--2899799568666788766
No 106
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=36.61 E-value=35 Score=15.68 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=37.8
Q ss_pred ECCCHHHHHHHHHHHHHHHCCCEEEEEECH---HHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 879178999999999987328704896188---999999873157865510088007986
Q gi|254781054|r 26 MGTGSTAKEFMILLADKIANGFRVQVIPSS---RNTENFCKIHHIPLHSPEDVSSVDLSI 82 (231)
Q Consensus 26 lGtGSTv~~~i~~L~~~~~~~~~i~~v~tS---~~t~~~a~~~gi~~~~l~~~~~iDi~i 82 (231)
-|||-|+-. .+.+.+-++.|....++++. .+-...+..+|+++.++..-+.+.+.-
T Consensus 41 ~G~GKt~~~-~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~~~~~~G~L~i~~ 99 (241)
T PRK06067 41 NDTGKSVLS-QQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDISDFFIWGYLRIFP 99 (241)
T ss_pred CCCCHHHHH-HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCEEEE
T ss_conf 998879999-99999998679829999942899999999998399859998669705783
No 107
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=36.28 E-value=29 Score=16.23 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=13.0
Q ss_pred HHHHHHHHHH--HHCCCCCEEEECCCHHHHHH
Q ss_conf 9999999999--83899789988791789999
Q gi|254781054|r 6 MKRNAARRAI--QYVVDGMTLGMGTGSTAKEF 35 (231)
Q Consensus 6 ~K~~~a~~A~--~~v~~gmviGlGtGSTv~~~ 35 (231)
++..+.++++ ...+.|.++|+-+|||..-+
T Consensus 127 l~t~~~r~~ll~r~~q~g~t~gidsgstttk~ 158 (404)
T TIGR03286 127 LTTIVRRKSLLARERQEGLTLGIDSGSTTTKA 158 (404)
T ss_pred HHHHHHHHHHHHHHHHHCEEEEECCCCCEEEE
T ss_conf 99999999998787761844654279851458
No 108
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=35.80 E-value=31 Score=16.05 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHCCCCEEECCEECC------CCCEEEEECCCC
Q ss_conf 898999999627996866480247------677899977998
Q gi|254781054|r 189 PDPQIISGELCNIPGVIEHGLFIN------MVDCAIIGTSDG 224 (231)
Q Consensus 189 ~dp~~le~~L~~IpGVVe~GlF~~------~~d~viv~~~dG 224 (231)
-.-+.| +++|+|+|.||. |.. +++.|+||..-+
T Consensus 560 FsMARL-DrvKNlTGLvE~--yg~s~~Lr~l~NLv~VaG~~~ 598 (790)
T TIGR02470 560 FSMARL-DRVKNLTGLVEL--YGRSKKLRELANLVVVAGKLD 598 (790)
T ss_pred EEECCC-CCCCCCHHHHHH--HCCCHHHHHHCCEEEEECCCC
T ss_conf 630630-010134778848--504844781668888806568
No 109
>KOG1197 consensus
Probab=35.63 E-value=37 Score=15.59 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=46.0
Q ss_pred HCCCCCEEEE--CCCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHCCCC--C-----------CCCCCCCEEEE
Q ss_conf 3899789988--791789999999999873-287048961889999998731578--6-----------55100880079
Q gi|254781054|r 17 YVVDGMTLGM--GTGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFCKIHHIP--L-----------HSPEDVSSVDL 80 (231)
Q Consensus 17 ~v~~gmviGl--GtGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a~~~gi~--~-----------~~l~~~~~iDi 80 (231)
.|++|..|=+ -.|--=.. |.+.++ .+.+..+.+|+..-...|++.|-. + ..+..-..+|+
T Consensus 143 ~vkpGhtVlvhaAAGGVGll----l~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~ 218 (336)
T KOG1197 143 NVKPGHTVLVHAAAGGVGLL----LCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDA 218 (336)
T ss_pred CCCCCCEEEEEECCCCHHHH----HHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCCCEE
T ss_conf 88999789998315628799----99999752867999725378899998648743000450569999984148877105
Q ss_pred EEC--CHHCCCCCCEEEECCC
Q ss_conf 863--3000476605883165
Q gi|254781054|r 81 SID--GFDEIDSRLRLIKGYG 99 (231)
Q Consensus 81 ~iD--GaDevd~~l~lIKGgG 99 (231)
.+| |-|-....++++|-+|
T Consensus 219 vyDsvG~dt~~~sl~~Lk~~G 239 (336)
T KOG1197 219 VYDSVGKDTFAKSLAALKPMG 239 (336)
T ss_pred EECCCCCHHHHHHHHHHCCCC
T ss_conf 632656414677899753486
No 110
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=35.48 E-value=37 Score=15.57 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=77.4
Q ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCCCC-CCCCC--EEEEEECCHHCCC
Q ss_conf 99838997899887917899999999998732-87048961889999998731578655-10088--0079863300047
Q gi|254781054|r 14 AIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKIHHIPLHS-PEDVS--SVDLSIDGFDEID 89 (231)
Q Consensus 14 A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~-~~~i~~v~tS~~t~~~a~~~gi~~~~-l~~~~--~iDi~iDGaDevd 89 (231)
+......-..|=.=|...|.+|.+.+.+.... .....+.+-+..|+..++++|+...- +.... .+=..+...+.-+
T Consensus 47 ~~~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~~L~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~ 126 (252)
T PRK05928 47 ALAFLGEADAVIFTSKNAVEFLLSALKKKGLKWPLLAKYAAIGEKTALALKKLGGKPVFVPEDGEGSELLLELPELNLPG 126 (252)
T ss_pred HHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 98515687889998889999999999852987534884999989999999971998605299986799999987417789
Q ss_pred CCCEEEECCCHH-HHHHHHHHHHHCCEEEEEEHHHCCCC-----C-CCC-CCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 660588316577-77787998610226999623035134-----5-578-87267872575899999986322148
Q gi|254781054|r 90 SRLRLIKGYGGA-LLREKIIAHAASRFIVIGDESKRVDF-----L-GRG-MLPIEIDQFGVNKTLSALKEVASCFG 157 (231)
Q Consensus 90 ~~l~lIKGgGgA-l~rEKiva~~a~~~I~i~D~sK~v~~-----L-g~~-plPVEV~p~~~~~v~~~l~~~~~~~G 157 (231)
...-..+|.++. .+.|.+-+....-.-+.+=+++..+. + ..+ .-.+.++.|..+...+.+-+.+...+
T Consensus 127 ~~vL~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~~~v~~~~~~~~~~~ 202 (252)
T PRK05928 127 KRVLYLRGNGGRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSPSMVRAFLSLAPELY 202 (252)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHC
T ss_conf 8799981676665789999977984799986576378888279999998628987999909999999999866403
No 111
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=35.45 E-value=37 Score=15.57 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=30.7
Q ss_pred CEEEEC-CCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCC
Q ss_conf 899887-91789999999999873287048961889999998731578655100
Q gi|254781054|r 22 MTLGMG-TGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 22 mviGlG-tGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~ 74 (231)
.+|.+- ||.|-+ .+..+.+-.+.+..+.+++|.-.-+.+|+++++|.+.+..
T Consensus 46 lvi~~S~SGnTeE-tl~~~~~a~~~ga~vi~itsGG~L~~~a~~~~~p~v~iP~ 98 (119)
T cd05017 46 LVIAVSYSGNTEE-TLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPK 98 (119)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEECCC
T ss_conf 8999928979689-9999999998599099984995599999887999898799
No 112
>TIGR01923 menE O-succinylbenzoate-CoA ligase; InterPro: IPR010192 This entry represents the enzyme O-succinylbenzoate-CoA ligase (MenE), which is involved in the fourth step of the menaquinone (vitamin K2) biosynthesis pathway. In bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In green sulphur bacteria and heliobacteria, menaquinones are thought to be used as a loosely bound secondary electron acceptor in the photosynthetic reaction centre. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem (PS) I. .; GO: 0008756 o-succinylbenzoate-CoA ligase activity, 0009234 menaquinone biosynthetic process.
Probab=35.45 E-value=37 Score=15.57 Aligned_cols=53 Identities=28% Similarity=0.225 Sum_probs=35.6
Q ss_pred CEEEEEECCCCCEEC------CC-CCEEEEECCCC-------CCCHHHHHHHHHCCCCEEECCEECC
Q ss_conf 503772258863625------78-88899820798-------6898999999627996866480247
Q gi|254781054|r 160 EELRLRRNGSGLFVS------DG-GNYIVDAFFGF-------IPDPQIISGELCNIPGVIEHGLFIN 212 (231)
Q Consensus 160 ~~lR~~~~~~gp~iT------Dn-GN~IlD~~~~~-------i~dp~~le~~L~~IpGVVe~GlF~~ 212 (231)
.+++...+..|+|-| |+ |++.++=+-++ =-.|++.|.-|.++|+|=|..+...
T Consensus 359 ~~~~~~~~~~GWf~TgD~G~l~~~g~L~v~~R~~dliISGGENIyP~EIE~v~~s~p~v~~a~vvp~ 425 (490)
T TIGR01923 359 GELQEAFEQNGWFKTGDLGELDGDGFLYVLGRRDDLIISGGENIYPEEIEKVLYSHPGVQEAVVVPK 425 (490)
T ss_pred CCCCCHHHCCCCCCCCCEEEECCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEECC
T ss_conf 6535302227753546510461786599733621434617856687999999853876268888478
No 113
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.89 E-value=38 Score=15.51 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=23.8
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCC
Q ss_conf 999987315786551008800798633000476
Q gi|254781054|r 58 TENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDS 90 (231)
Q Consensus 58 t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~ 90 (231)
-+..|.++|+|+.....-+.+.++-||.--+|-
T Consensus 64 lk~~ad~~Gi~v~~i~~~~Yi~lt~d~~~al~f 96 (99)
T cd05565 64 LKKDTDRLGIKLVTTTGKQYIELTRDPDGALKF 96 (99)
T ss_pred HHHHHHHCCCEEEEECHHHEEEEECCHHHHHHH
T ss_conf 999999839918870834522211598886777
No 114
>KOG1467 consensus
Probab=34.51 E-value=38 Score=15.47 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHCCCCCE-EEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-----HHHHHHHHHHCCCCCCCC--CCC---
Q ss_conf 99999999983899789-9887917899999999998732870489618-----899999987315786551--008---
Q gi|254781054|r 7 KRNAARRAIQYVVDGMT-LGMGTGSTAKEFMILLADKIANGFRVQVIPS-----SRNTENFCKIHHIPLHSP--EDV--- 75 (231)
Q Consensus 7 K~~~a~~A~~~v~~gmv-iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-----S~~t~~~a~~~gi~~~~l--~~~--- 75 (231)
-+...+.|.+.|++|.+ +-.|.-|+|+..+.+ +......+.+.+|-| .......+...||++... +..
T Consensus 346 ~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~-A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syi 424 (556)
T KOG1467 346 DQAISQHAVTKIQDGDVLLTYGSSSVVNMILLE-AKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYI 424 (556)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 999999999875158789995561899999999-9973666489998079875347999999975987079986166889
Q ss_pred -CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCE-EEEEEHHHCCCC
Q ss_conf -8007986330004766058831657777787998610226-999623035134
Q gi|254781054|r 76 -SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRF-IVIGDESKRVDF 127 (231)
Q Consensus 76 -~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~-I~i~D~sK~v~~ 127 (231)
...+-.|-||-.+-.|+.+----|.|.+- ++|....-= ++.+..-|+.++
T Consensus 425 m~evtkvfLGahailsNG~vysR~GTa~va--lvAna~nVPVlVCCE~yKF~eR 476 (556)
T KOG1467 425 MLEVTKVFLGAHAILSNGAVYSRVGTACVA--LVANAFNVPVLVCCEAYKFHER 476 (556)
T ss_pred HHHHHEEEECHHHHHCCCCHHHHCCHHHHH--HHHCCCCCCEEEEECCHHHHHH
T ss_conf 875100253214563285102200258999--9733368977998220023456
No 115
>PRK04182 cytidylate kinase; Provisional
Probab=33.81 E-value=16 Score=17.83 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=26.0
Q ss_pred HHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9998732870489618899999987315786551008
Q gi|254781054|r 39 LADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV 75 (231)
Q Consensus 39 L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~ 75 (231)
+|+++++.+.+.++.++.--+..|++.|+++..+...
T Consensus 16 Iak~LA~~lg~~~~d~g~i~r~~a~~~g~~~~~~~~~ 52 (178)
T PRK04182 16 VARLLAEKLGLKLVSAGDIFRELARERGMSLEEFNKY 52 (178)
T ss_pred HHHHHHHHHCCEEECHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999959938721299999999859999999999
No 116
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=33.53 E-value=40 Score=15.38 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEECH-HHHHHHHHHCC
Q ss_conf 9999983899789988791789999999999873287-04896188-99999987315
Q gi|254781054|r 11 ARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF-RVQVIPSS-RNTENFCKIHH 66 (231)
Q Consensus 11 a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~-~i~~v~tS-~~t~~~a~~~g 66 (231)
|++-+.-.++-.++=+|+|.+....++.|.++ +. +++++.-| .+.+.++.++|
T Consensus 3 a~~~~~~l~~~~vlVIGaG~~~~~~~~~L~~~---g~~~i~v~nRt~~ka~~la~~~~ 57 (134)
T pfam01488 3 AKKIFGDLKGKKVLLIGAGEMARLAAKHLLSK---GAKKITIANRTLEKAKELAEEFG 57 (134)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHCC
T ss_conf 77763881489899999609999999999975---99889995475789999999849
No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=33.42 E-value=18 Score=17.47 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHH----HCCCCCE
Q ss_conf 9878999999999998----3899789
Q gi|254781054|r 1 MDALQMKRNAARRAIQ----YVVDGMT 23 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~----~v~~gmv 23 (231)
||+-.-.++|..-|.. -|+.||.
T Consensus 42 MDTVTE~~MAiAMA~~GGiGVIH~N~~ 68 (476)
T TIGR01302 42 MDTVTESRMAIAMAREGGIGVIHRNMS 68 (476)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 882459999999985499479944799
No 118
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.36 E-value=40 Score=15.36 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEE-EEEECH-----HH-----HHHHHHHCCCC
Q ss_conf 98789999999999983899789988791789999999999873-28704-896188-----99-----99998731578
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRV-QVIPSS-----RN-----TENFCKIHHIP 68 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i-~~v~tS-----~~-----t~~~a~~~gi~ 68 (231)
|+.+| ++.+.+.+++.+.+.--|=.|+|++...-..++++..+ .|.+. .++|+. .+ -+..+...++|
T Consensus 54 Ls~~E-r~~l~~~~~~~~~~r~pvi~gv~~~st~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~va~a~~~p 132 (294)
T PRK04147 54 LSTEE-RKQVLEIVAEEAKGKIKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNP 132 (294)
T ss_pred CCHHH-HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89999-99999999998189732763478888899999999999759988997278677899899999999998504997
Q ss_pred CCCCCC--CCEEEEEECCHHCC--CCCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCCCC
Q ss_conf 655100--88007986330004--766058831657-777787998610226999623035134
Q gi|254781054|r 69 LHSPED--VSSVDLSIDGFDEI--DSRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRVDF 127 (231)
Q Consensus 69 ~~~l~~--~~~iDi~iDGaDev--d~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v~~ 127 (231)
+.-.+. ....++..|=..++ .++..-||=..+ ....+.+.....+++++...+.-+.+.
T Consensus 133 i~iYn~P~~tg~~~~~~~l~~L~~~~~i~giK~s~~d~~~~~~i~~~~~~~~v~~G~d~~~~~~ 196 (294)
T PRK04147 133 MIVYNIPALTGVNLSLDQFNELFTLPKIIGVKQTAGDLYQLERIRKAFPDKLIYNGFDEMFLSG 196 (294)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 7887567541678899999999568998899928899999999997489849995865879999
No 119
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=33.24 E-value=22 Score=16.98 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEC--HHHHHHHHHHCCCCCC--CCCCCCEEEEEECCHHCC
Q ss_conf 7917899999999998732870489618--8999999873157865--510088007986330004
Q gi|254781054|r 27 GTGSTAKEFMILLADKIANGFRVQVIPS--SRNTENFCKIHHIPLH--SPEDVSSVDLSIDGFDEI 88 (231)
Q Consensus 27 GtGSTv~~~i~~L~~~~~~~~~i~~v~t--S~~t~~~a~~~gi~~~--~l~~~~~iDi~iDGaDev 88 (231)
+||..=...++.|.+ .|..+++..- |..........|+.+. ++++.+.+.=++.|+|-|
T Consensus 6 atG~iG~~vv~~L~~---~g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v 68 (232)
T pfam05368 6 ATGYQGGSVVRASLK---AGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVV 68 (232)
T ss_pred CCHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEE
T ss_conf 682899999999985---899389997187366566664179889990688878999996799889
No 120
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=32.61 E-value=41 Score=15.28 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHCCC---C-C---EEEECCCHHHHHHHHHHHHHHHCC-CEEEEEECHHHHHHHHHHCCCCCCCCCC
Q ss_conf 789999999999983899---7-8---998879178999999999987328-7048961889999998731578655100
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVD---G-M---TLGMGTGSTAKEFMILLADKIANG-FRVQVIPSSRNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~---g-m---viGlGtGSTv~~~i~~L~~~~~~~-~~i~~v~tS~~t~~~a~~~gi~~~~l~~ 74 (231)
.+|+=+.||+.-++.|+. . . |+||-||||=.-.=+.|-+.-+.+ .+-+-| .|-.+=+=.||+-..|+.
T Consensus 9 ~E~~sk~AA~~i~~~I~~Fkp~~~~PFVLGLpTGgTP~g~Yk~LI~l~qa~~~sF~~v----~TfNlDEY~GL~~~hP~S 84 (260)
T TIGR00502 9 YEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPVGTYKQLIRLYQAGKISFQNV----VTFNLDEYVGLSEEHPES 84 (260)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC----EEECCCCCCCCCCCCCCC
T ss_conf 7689999999999986403776236746106888875789999999850487432410----553141001587888852
Q ss_pred CCE--EEEEECCHHCCCCCCEEEECC-----CHHHHHHHHHHHHHCCEEEEE
Q ss_conf 880--079863300047660588316-----577777879986102269996
Q gi|254781054|r 75 VSS--VDLSIDGFDEIDSRLRLIKGY-----GGALLREKIIAHAASRFIVIG 119 (231)
Q Consensus 75 ~~~--iDi~iDGaDevd~~l~lIKGg-----GgAl~rEKiva~~a~~~I~i~ 119 (231)
... -+=-|+=.|---.+-|+.-|- -.|--.|+.|-+.-+--+.|.
T Consensus 85 Yh~FM~~~fF~HId~~~~~i~IlnGna~dl~aeCr~YE~~i~s~G~i~lf~g 136 (260)
T TIGR00502 85 YHSFMHNNFFQHIDIKPENINILNGNADDLEAECRRYEEKIKSYGGIDLFLG 136 (260)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 1378665123544777344558886865578899899999985188178973
No 121
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=32.43 E-value=41 Score=15.26 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred EHHHCCCCCCCCC--CCEEEEECCHHHHHHHHHHHHHHC---CCCCEEEEEECCCCCEECCCCCEE---EEECCCCCCCH
Q ss_conf 2303513455788--726787257589999998632214---898503772258863625788889---98207986898
Q gi|254781054|r 120 DESKRVDFLGRGM--LPIEIDQFGVNKTLSALKEVASCF---GLNEELRLRRNGSGLFVSDGGNYI---VDAFFGFIPDP 191 (231)
Q Consensus 120 D~sK~v~~Lg~~p--lPVEV~p~~~~~v~~~l~~~~~~~---G~~~~lR~~~~~~gp~iTDnGN~I---lD~~~~~i~dp 191 (231)
.++|+.+.| .|| .|+-|+-.+.+.-...+-+....+ -+.+.+.++. +.-|||. +++.-.+++..
T Consensus 2 ~~~k~~~l~-eFPc~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~-------SSkGnY~svsI~i~A~~~EQ~ 73 (90)
T COG2921 2 TKTKLKELL-EFPCTFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKP-------SSKGNYLSVSITIRATNIEQV 73 (90)
T ss_pred CCCCCCHHE-ECCCCCEEEEHCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC-------CCCCCEEEEEEEEEECCHHHH
T ss_conf 866550022-777643540000145668899999999878765576056314-------889846889999997778999
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999996279968
Q gi|254781054|r 192 QIISGELCNIPGV 204 (231)
Q Consensus 192 ~~le~~L~~IpGV 204 (231)
..+..+|..+++|
T Consensus 74 e~ly~eL~~~~~V 86 (90)
T COG2921 74 EALYRELRKHEIV 86 (90)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999998618866
No 122
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=32.04 E-value=42 Score=15.22 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECC-HHCCC---CCCEEEECCCHHHHHH
Q ss_conf 99999998732870489618899999987315786551008800798633-00047---6605883165777778
Q gi|254781054|r 35 FMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDG-FDEID---SRLRLIKGYGGALLRE 105 (231)
Q Consensus 35 ~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDG-aDevd---~~l~lIKGgGgAl~rE 105 (231)
++..|++.++....++.-|++......|.+. |.-+-+++.+--|++||. --||- .+=-++-|.+|+.++|
T Consensus 27 li~~iAk~ikKRIviRpdpsil~~~e~a~~~-I~~ivPeeA~i~~i~FD~~~gEV~Iea~kPg~viGk~g~~l~e 100 (145)
T cd02410 27 LVKDLAKDLRKRIVIRPDPSVLKPPEEAIKI-ILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLRE 100 (145)
T ss_pred HHHHHHHHHHCEEEECCCHHHCCCHHHHHHH-HHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCHHHHH
T ss_conf 9999999872027973880341899999999-9985896468446897488857999977977797276167999
No 123
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=31.20 E-value=43 Score=15.14 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCC--CCCEEEE
Q ss_conf 78999999999998389978998879178999999999987328704896188999999873157865510--0880079
Q gi|254781054|r 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPE--DVSSVDL 80 (231)
Q Consensus 3 ~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~--~~~~iDi 80 (231)
..++|+..|++ .-|.+.+++ +|.||+--. ..+......+..+...||=..-+..++..|.++.... +.+..++
T Consensus 57 ~~~Lr~~iA~~--~gv~~~~I~-vgnGs~Eli--~~i~~~~~~~~~~i~~Ptf~~Y~~~a~~~g~~v~~~~l~~~~~~~~ 131 (356)
T PRK08056 57 YFHLHQALARH--HQVPASWIL-AGNGETESI--FTVASGLKPRRAMIVTPGFAEYGRALAQVGCEIRRWSLREADGWQL 131 (356)
T ss_pred HHHHHHHHHHH--HCCCHHHEE-ECCCHHHHH--HHHHHHCCCCCEEEECCCHHHHHHHHHHCCCEEEEEECCHHHCCCC
T ss_conf 89999999998--298889988-758789999--9999854899669978874999999998597699986773315897
Q ss_pred EECCHHCCCCCCEEEE-C-----CCHHHHHHHHHHHH----HCCEEEEEEHHH
Q ss_conf 8633000476605883-1-----65777778799861----022699962303
Q gi|254781054|r 81 SIDGFDEIDSRLRLIK-G-----YGGALLREKIIAHA----ASRFIVIGDESK 123 (231)
Q Consensus 81 ~iDGaDevd~~l~lIK-G-----gGgAl~rEKiva~~----a~~~I~i~D~sK 123 (231)
.-.=.+.++++-.++= + -|..+.+|.+.+-. +...++++||.=
T Consensus 132 ~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~~vvvDEAY 184 (356)
T PRK08056 132 TDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIADRCKSLNINLILDEAF 184 (356)
T ss_pred CHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 69999733678888998189999887589999999998724049399974455
No 124
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.02 E-value=44 Score=15.12 Aligned_cols=67 Identities=21% Similarity=0.123 Sum_probs=46.6
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECC
Q ss_conf 7872575899999986322148985037722588636257888899820798689899999962799686648
Q gi|254781054|r 136 EIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHG 208 (231)
Q Consensus 136 EV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~G 208 (231)
.+..-...-+++.+..+...+|++=..-.- |+-+.|---+......+.|+..|-.+|+++|.|.+.-
T Consensus 4 ~I~a~nk~GVL~~itgvIa~hg~NItytqq------fi~~~g~~~iY~ElE~v~d~e~Li~~L~~~~~V~eVe 70 (72)
T cd04874 4 SIIAEDKPGVLRDLTGVIAEHGGNITYTQQ------FIEREGKARIYMELEGVGDIEELVEELRSLPIVREVE 70 (72)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEE------EEECCCEEEEEEEEECCCCHHHHHHHHHCCCCEEEEE
T ss_conf 999568774699988799864898699999------9807982899999967999899999987799559999
No 125
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=30.72 E-value=44 Score=15.09 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
+++.||.||=.|..-+-+.. ..|.+..+.|. +......|.++++|.++
T Consensus 58 p~~~iGaGTV~~~e~~~~a~----~aGA~FivSP~~~~~v~~~a~~~~i~~iP 106 (196)
T pfam01081 58 PDALVGAGTVLNAQQLAEAA----EAGAQFVVSPGLTADLLKHAVDVKIPLIP 106 (196)
T ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEEECCCCHHHHHHHHHHCCCCEEC
T ss_conf 99679998376899999999----74999999787639999999973996637
No 126
>pfam12048 DUF3530 Protein of unknown function (DUF3530). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=30.62 E-value=44 Score=15.08 Aligned_cols=38 Identities=26% Similarity=0.176 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 999999998389978-99887917899999999998732
Q gi|254781054|r 8 RNAARRAIQYVVDGM-TLGMGTGSTAKEFMILLADKIAN 45 (231)
Q Consensus 8 ~~~a~~A~~~v~~gm-viGlGtGSTv~~~i~~L~~~~~~ 45 (231)
++.|-.+.-.=+.+- ++=||.|+.+.+++++|+++-..
T Consensus 163 ri~a~~~~~~~~~~~~ivll~~G~gA~~a~~~l~~~~~~ 201 (294)
T pfam12048 163 RLEALIAFAQQYGGKNIVLLGQGTGAGWAIRYLAQKPSP 201 (294)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 999999999757884489998277189999999828987
No 127
>PRK10689 transcription-repair coupling factor; Provisional
Probab=30.47 E-value=45 Score=15.06 Aligned_cols=10 Identities=0% Similarity=0.013 Sum_probs=3.8
Q ss_pred HCCEEEEEEH
Q ss_conf 0226999623
Q gi|254781054|r 112 ASRFIVIGDE 121 (231)
Q Consensus 112 a~~~I~i~D~ 121 (231)
..+.|+.++.
T Consensus 382 ~~~vi~~~~s 391 (1148)
T PRK10689 382 DGPVVFSVES 391 (1148)
T ss_pred CCEEEEEECC
T ss_conf 9829999688
No 128
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.31 E-value=45 Score=15.04 Aligned_cols=132 Identities=23% Similarity=0.333 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCC--EEEECCCHHHHHHHHHHHHHHH-CCCE-EEEEECHHH----------HHHHHHHCC
Q ss_conf 9878999999999998389978--9988791789999999999873-2870-489618899----------999987315
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGM--TLGMGTGSTAKEFMILLADKIA-NGFR-VQVIPSSRN----------TENFCKIHH 66 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gm--viGlGtGSTv~~~i~~L~~~~~-~~~~-i~~v~tS~~----------t~~~a~~~g 66 (231)
|+.+| ++.+.+.+++.+.... ++|.|+.||.. ..+++++.+ .|.+ +.+.|+++- -+..+...+
T Consensus 47 Ls~~E-r~~l~~~~~~~~~~~~pvi~gv~~~s~~~--~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~~~ 123 (281)
T cd00408 47 LTDEE-RKEVIEAVVEAVAGRVPVIAGVGANSTRE--AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CCHHH-HHHHHHHHHHHCCCCCEEEEECCCCCHHH--HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 89999-99999999998089850999578788999--9999999997599989987997778999999999999985559
Q ss_pred CCCCCCCC--CCEEEEEECCHHCC--CCCCEEEECCCHHHHH-HHHHHHHHCCEEEEE-EHHHCCCCC--C-CCCCCE
Q ss_conf 78655100--88007986330004--7660588316577777-879986102269996-230351345--5-788726
Q gi|254781054|r 67 IPLHSPED--VSSVDLSIDGFDEI--DSRLRLIKGYGGALLR-EKIIAHAASRFIVIG-DESKRVDFL--G-RGMLPI 135 (231)
Q Consensus 67 i~~~~l~~--~~~iDi~iDGaDev--d~~l~lIKGgGgAl~r-EKiva~~a~~~I~i~-D~sK~v~~L--g-~~plPV 135 (231)
+|+.-.+. ....++..|=..++ .++...||=..+.+.+ ..++.....+|.++. ++.-+.+.+ | ...++-
T Consensus 124 ~pi~iYn~P~~~g~~l~~~~l~~L~~~~nv~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i~~ 201 (281)
T cd00408 124 LPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDLLLPALALGADGAISG 201 (281)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCEEEC
T ss_conf 977997277531677689999998489998999848899999999999759970562696688999987289814402
No 129
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=29.92 E-value=46 Score=15.00 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=86.6
Q ss_pred HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCCCCCCC-CCE--EEEEECCHHCCC
Q ss_conf 99838997899887917899999999998732-87048961889999998731578655100-880--079863300047
Q gi|254781054|r 14 AIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKIHHIPLHSPED-VSS--VDLSIDGFDEID 89 (231)
Q Consensus 14 A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~-~~~i~~v~tS~~t~~~a~~~gi~~~~l~~-~~~--iDi~iDGaDevd 89 (231)
++..+..-.-|=+=|..+|.+|-+++...... -.+..+.+-+..|+..++++|+...-..+ ... +=..+.......
T Consensus 44 ~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~ 123 (248)
T COG1587 44 ALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGG 123 (248)
T ss_pred HHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 77415636889996889999999999873623212780999889999999982998775898877799999987425678
Q ss_pred CCCEEEECCCH-HHHHHHHHHHHHCCEEEEEEHHHCCCCC------CCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 66058831657-7777879986102269996230351345------5788726787257589999998632214
Q gi|254781054|r 90 SRLRLIKGYGG-ALLREKIIAHAASRFIVIGDESKRVDFL------GRGMLPIEIDQFGVNKTLSALKEVASCF 156 (231)
Q Consensus 90 ~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~D~sK~v~~L------g~~plPVEV~p~~~~~v~~~l~~~~~~~ 156 (231)
...-.+.|.++ ..+.+++...-++-.-+.+=+++..+.= .-..-++.++-|......+.+-+.+...
T Consensus 124 ~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~ 197 (248)
T COG1587 124 KRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPES 197 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 75999737777389999999769779999777530687557789888511785599987999999999863522
No 130
>pfam09466 Yqai Hypothetical protein Yqai. This hypothetical protein is expressed in bacteria, particularly Bacillus subtilis. It forms a homo-dimer, with each monomer containing an alpha helix and four beta strands.
Probab=29.84 E-value=28 Score=16.36 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCEEEEEECCH--HCCCCC-CEEEECCCHHHHHHHHHHHHH
Q ss_conf 157865510088007986330--004766-058831657777787998610
Q gi|254781054|r 65 HHIPLHSPEDVSSVDLSIDGF--DEIDSR-LRLIKGYGGALLREKIIAHAA 112 (231)
Q Consensus 65 ~gi~~~~l~~~~~iDi~iDGa--Devd~~-l~lIKGgGgAl~rEKiva~~a 112 (231)
.|.-+-++.+...+|+-|+-+ +||-|. -.+|--.|-.++||.++.|.-
T Consensus 10 NgYgi~D~qe~~~id~p~~D~~G~ev~p~Dd~liapdGEv~LreN~~~Yli 60 (71)
T pfam09466 10 NGYGIPDHDELNEIDHPIDDAMGDEILPGDDFLIADDGEIILRENIEDYLI 60 (71)
T ss_pred CCCCCCCHHHCCCCCCCHHHHCCCCCCCCCCEEECCCCEEEHHHHHHHHHH
T ss_conf 676888977746667646664057566787668779976743540699999
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=29.23 E-value=47 Score=14.93 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=21.4
Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCEEEEEECH
Q ss_conf 98879178999999999987328704896188
Q gi|254781054|r 24 LGMGTGSTAKEFMILLADKIANGFRVQVIPSS 55 (231)
Q Consensus 24 iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS 55 (231)
=|-|||-|..|++.++..-.+.+..+ +|+|.
T Consensus 284 ApTGtGKTlaYLlPai~~A~~~~~~v-vIST~ 314 (932)
T PRK08074 284 AGTGTGKTLAYLLPAAYFAKKKEEPV-IISTY 314 (932)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCE-EEEEC
T ss_conf 68888713687999999999759909-99916
No 132
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=29.13 E-value=47 Score=14.92 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=32.0
Q ss_pred EECCC--HHHHHHHHHHHHHHHC-C---CEEEE-EECHHHHHHHHHHCCCCCCC
Q ss_conf 88791--7899999999998732-8---70489-61889999998731578655
Q gi|254781054|r 25 GMGTG--STAKEFMILLADKIAN-G---FRVQV-IPSSRNTENFCKIHHIPLHS 71 (231)
Q Consensus 25 GlGtG--STv~~~i~~L~~~~~~-~---~~i~~-v~tS~~t~~~a~~~gi~~~~ 71 (231)
|=||| +||..+|..|.+.... | ..|.. -||...++-+.+.++-.+..
T Consensus 250 GPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~ 303 (753)
T TIGR01447 250 GPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKK 303 (753)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 988977899999999999989864997404788668447999999999988632
No 133
>pfam03927 NapD NapD protein. Uncharacterized protein involved in formation of periplasmic nitrate reductase.
Probab=28.91 E-value=47 Score=14.89 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=47.2
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEEC
Q ss_conf 87267872575899999986322148985037722588636257888899820798689899999962799686648024
Q gi|254781054|r 132 MLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFI 211 (231)
Q Consensus 132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~ 211 (231)
.+-|-+.|.-...+.++|..+. ..++- ..++.|.+++=+.-.......+.-..|+.+|||+...+-.
T Consensus 6 SlVV~~~Pe~~~~V~~~l~~~p-----g~Eih--------~~~~~GKiVVtiE~~~~~~~~~~i~~i~~l~GVlsa~lVY 72 (78)
T pfam03927 6 SLVVHVRPERLAEVKAAILALP-----GAEIH--------AVSPEGKLVVVLEGESQGAILDTIEAINALEGVLSASLVY 72 (78)
T ss_pred EEEEEECHHHHHHHHHHHHCCC-----CCEEE--------CCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 8999968777999999997499-----96886--------3799942999997288279999999986599804898767
Q ss_pred C
Q ss_conf 7
Q gi|254781054|r 212 N 212 (231)
Q Consensus 212 ~ 212 (231)
.
T Consensus 73 h 73 (78)
T pfam03927 73 H 73 (78)
T ss_pred E
T ss_conf 8
No 134
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=28.66 E-value=48 Score=14.87 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=39.4
Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHH
Q ss_conf 98879178999999999987328704896188999999873157865510088007986330004766058831657777
Q gi|254781054|r 24 LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALL 103 (231)
Q Consensus 24 iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~ 103 (231)
=|-|||-|..|++..|.-....+..+.+.+.+..-..++.+--.|+..+...-.. ..-++||+..-+.
T Consensus 41 apTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~~~~~~~~~~------------~~~~~kgr~n~~~ 108 (654)
T COG1199 41 APTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPIHKLLKKLGG------------KFALLKGRSNYLC 108 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC------------HHHHHCCHHCCCC
T ss_conf 8998517599999999867752975999899576888987621345667764220------------0343237210104
Q ss_pred HHHH
Q ss_conf 7879
Q gi|254781054|r 104 REKI 107 (231)
Q Consensus 104 rEKi 107 (231)
-.+.
T Consensus 109 ~~~~ 112 (654)
T COG1199 109 LSRL 112 (654)
T ss_pred HHHH
T ss_conf 5767
No 135
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=28.40 E-value=24 Score=16.73 Aligned_cols=55 Identities=13% Similarity=0.341 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCC
Q ss_conf 58999999863221489850377225886362578888998207986898999999627996866480247677
Q gi|254781054|r 142 VNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVD 215 (231)
Q Consensus 142 ~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d 215 (231)
.....+...+.+..+|++.--|.- +++++.|++.+ .++|.+||--.+++|..++.
T Consensus 271 ~~~i~~~a~~~~~~lg~rg~~RiD-----f~~d~~g~~y~--------------lEvNt~PGmT~~Sl~p~~a~ 325 (344)
T PRK01966 271 TEQIRELAIKAFKALGCSGLARVD-----FFLTEDGEIYL--------------NEINTLPGFTPISMYPKLWE 325 (344)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-----EEEECCCCEEE--------------EEEECCCCCCCCCHHHHHHH
T ss_conf 999999999999981997279898-----99908998899--------------98208999875478999999
No 136
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=28.30 E-value=49 Score=14.83 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHHHH-CCCEEEEEECHHHHHHHH
Q ss_conf 91789999999999873-287048961889999998
Q gi|254781054|r 28 TGSTAKEFMILLADKIA-NGFRVQVIPSSRNTENFC 62 (231)
Q Consensus 28 tGSTv~~~i~~L~~~~~-~~~~i~~v~tS~~t~~~a 62 (231)
-|-|+..||+.++...+ ...+-.+|+||-.+++++
T Consensus 79 ~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~EQ~~ 114 (173)
T COG3688 79 EGETADSFIERYVAELRNAATHQVIVATSDRAEQWT 114 (173)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 876278999999999730466259999675155555
No 137
>PRK09098 type III secretion system protein HrpB; Validated
Probab=28.22 E-value=49 Score=14.82 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 78872678725758999999863221489850377225886362578888998207986898999999627996866
Q gi|254781054|r 130 RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIE 206 (231)
Q Consensus 130 ~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le~~L~~IpGVVe 206 (231)
..++-|-|.|--+..+.+.+.+.+..+|....++...... ..-|-+|+...|+.|. ..|+.+|..+-++++
T Consensus 150 ~~~l~VRVhPdD~d~ar~a~~~l~~~~~~~~~i~Vv~D~~----L~~G~CI~Etd~G~ID--AsL~~QL~aLr~ai~ 220 (229)
T PRK09098 150 ASYLTVRVHPADLDAARRAFGALAAEGGRNVPVEVVGDPR----LAPGACVCEWDFGVFD--ASLDTQLRALRRAIA 220 (229)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC----CCCCCEEEECCCCEEE--CCHHHHHHHHHHHHH
T ss_conf 6628999888779999998999986469872137622787----8999868835875374--339999999999999
No 138
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=28.02 E-value=49 Score=14.80 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=48.7
Q ss_pred CEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEEC-------HHHHHHHHHHCCCCCCC-CCCCCEEEEEECCHHCCC
Q ss_conf 89988-7917899999999998732870489618-------89999998731578655-100880079863300047
Q gi|254781054|r 22 MTLGM-GTGSTAKEFMILLADKIANGFRVQVIPS-------SRNTENFCKIHHIPLHS-PEDVSSVDLSIDGFDEID 89 (231)
Q Consensus 22 mviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~t-------S~~t~~~a~~~gi~~~~-l~~~~~iDi~iDGaDevd 89 (231)
|.||| |+|-|+.+-=-++ -.-+.|+....|+. =.|-.+=|.+++||-.- ..+.|.+-||+-|.--+=
T Consensus 125 MfVGLQGaGKTTtctKLA~-YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~EGv~~Fk 200 (453)
T TIGR01425 125 MFVGLQGAGKTTTCTKLAY-YYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYLESDPVKIASEGVEKFK 200 (453)
T ss_pred EEEECCCCCHHHHHHHHHH-HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHH
T ss_conf 8862148871566878777-763266432565177542324899987476448971201048987078002011322
No 139
>KOG1468 consensus
Probab=27.93 E-value=31 Score=16.01 Aligned_cols=102 Identities=23% Similarity=0.025 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEC------HHHHHHHHHHCCCCCCCCCC--------CCEEEEEECCHHCCCCCCEE-E
Q ss_conf 899999999998732870489618------89999998731578655100--------88007986330004766058-8
Q gi|254781054|r 31 TAKEFMILLADKIANGFRVQVIPS------SRNTENFCKIHHIPLHSPED--------VSSVDLSIDGFDEIDSRLRL-I 95 (231)
Q Consensus 31 Tv~~~i~~L~~~~~~~~~i~~v~t------S~~t~~~a~~~gi~~~~l~~--------~~~iDi~iDGaDevd~~l~l-I 95 (231)
|+-=.|+.|.+.-+-. +..|--| |.-|+.++.--.||-.-..+ ..++|-.+=|||-|-.|++. =
T Consensus 174 TALGVIRsLh~~grLe-hvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVarNGDTAN 252 (354)
T KOG1468 174 TALGVIRSLHSLGRLE-HVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTAN 252 (354)
T ss_pred HHHHHHHHHHHCCCCC-EEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEECCCCCHH
T ss_conf 6889999987657740-477636666776530135887750076012166799999863897779976410112686222
Q ss_pred ECCCHHHHHHHHHHHHHC----CEEEEEEHHHCCCCCCCC-CCCEEEEE
Q ss_conf 316577777879986102----269996230351345578-87267872
Q gi|254781054|r 96 KGYGGALLREKIIAHAAS----RFIVIGDESKRVDFLGRG-MLPIEIDQ 139 (231)
Q Consensus 96 KGgGgAl~rEKiva~~a~----~~I~i~D~sK~v~~Lg~~-plPVEV~p 139 (231)
|=|-. .+|-.+| .|.+.+--+-.-..|..+ -+-||--|
T Consensus 253 KIGTy------~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp 295 (354)
T KOG1468 253 KIGTY------QLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERP 295 (354)
T ss_pred HHHHH------HHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEECC
T ss_conf 21255------79999986498638854643000345778746883068
No 140
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=27.89 E-value=49 Score=14.78 Aligned_cols=140 Identities=19% Similarity=0.249 Sum_probs=66.8
Q ss_pred HHHCCCCC-E--EEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEE-EEECCHHCC--
Q ss_conf 98389978-9--98879178999999999987328704896188999999873157865510088007-986330004--
Q gi|254781054|r 15 IQYVVDGM-T--LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVD-LSIDGFDEI-- 88 (231)
Q Consensus 15 ~~~v~~gm-v--iGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iD-i~iDGaDev-- 88 (231)
.+.|++|. | +|=|.|+. .++|.+ ..+.+..+|--+......|.+.|+++..-+--..+. ..=.-.|-|
T Consensus 8 ~~~I~~~srVLDlGCG~G~l----l~~L~~--~k~v~~~GvEid~~~v~~a~~kg~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 8 ARLIPPGSRVLDLGCGDGSL----LYLLQE--EKQVDGRGIELDAAGVAECVAKGLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred HHHCCCCCEEEEECCCCCHH----HHHHHH--CCCCCEEEECCCHHHHHHHHHCCCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 98658969899836889899----999987--669876983389999999986479545077445974577678037869
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHH---HCCCCCC-CCCCCE-EEEECCHH-------HHHHHHHHHHHHC
Q ss_conf 7660588316577777879986102269996230---3513455-788726-78725758-------9999998632214
Q gi|254781054|r 89 DSRLRLIKGYGGALLREKIIAHAASRFIVIGDES---KRVDFLG-RGMLPI-EIDQFGVN-------KTLSALKEVASCF 156 (231)
Q Consensus 89 d~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~s---K~v~~Lg-~~plPV-EV~p~~~~-------~v~~~l~~~~~~~ 156 (231)
..-+..++-=. ..++| + ..-+++.|+-.--- |..-.|. ++-.|+ +.+|+.|. .|++..+++....
T Consensus 82 s~vLqhl~~P~-~vL~E-m-lRVgk~~IVSfPNf~hw~~R~~ll~~GrmPvt~~lp~~WydTpnih~~Ti~DFe~lc~~~ 158 (193)
T pfam07021 82 SQTLQATRNPR-EVLDE-L-LRIGRRAIVSFPNFGHWRVRWSLLSRGRMPVTDLLPYTWYDTPNIHFCTIRDFEELCEEL 158 (193)
T ss_pred HHHHHHHCCCH-HHHHH-H-HHHCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 87998752819-99999-8-512686999943614799999999478755589999761489984744599999999988
Q ss_pred CCCCEEE
Q ss_conf 8985037
Q gi|254781054|r 157 GLNEELR 163 (231)
Q Consensus 157 G~~~~lR 163 (231)
|.+-.-|
T Consensus 159 ~i~I~~~ 165 (193)
T pfam07021 159 NLKVEDR 165 (193)
T ss_pred CCEEEEE
T ss_conf 9989999
No 141
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=27.66 E-value=26 Score=16.53 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=14.2
Q ss_pred EEC-CCCCEEEEECC-CCCCCHHHH
Q ss_conf 625-78888998207-986898999
Q gi|254781054|r 172 FVS-DGGNYIVDAFF-GFIPDPQII 194 (231)
Q Consensus 172 ~iT-DnGN~IlD~~~-~~i~dp~~l 194 (231)
++| |+.++++|.+. +.|.||..+
T Consensus 79 vlT~D~k~i~VD~~v~wrI~Dp~~f 103 (334)
T PRK11029 79 FVTKEKKDLIVDSYIKWRISDFSRY 103 (334)
T ss_pred EEECCCCEEEEEEEEEEEECCHHHH
T ss_conf 8851784899855899997378998
No 142
>pfam02348 CTP_transf_3 Cytidylyltransferase. This family consists of two main Cytidylyltransferase activities: 1) 3-deoxy-manno-octulosonate cytidylyltransferase,, EC:2.7.7.38 catalysing the reaction:- CTP + 3-deoxy-D-manno-octulosonate <= diphosphate + CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate cytidylyltransferase EC:2.7.7.43,, catalysing the reaction:- CTP + N-acylneuraminate <= diphosphate + CMP-N-acylneuraminate. NeuAc cytydilyltransferase of Mannheimia haemolytica has been characterized describing kinetics and regulation by substrate charge, energetic charge and amino-sugar demand.
Probab=27.53 E-value=50 Score=14.74 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=23.9
Q ss_pred CEEEECCCHHHHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHCCCCCC
Q ss_conf 899887917899999999998732870-4896188999999873157865
Q gi|254781054|r 22 MTLGMGTGSTAKEFMILLADKIANGFR-VQVIPSSRNTENFCKIHHIPLH 70 (231)
Q Consensus 22 mviGlGtGSTv~~~i~~L~~~~~~~~~-i~~v~tS~~t~~~a~~~gi~~~ 70 (231)
...=||.=+-+.+.++...+. ...+ +.+.+.|......|+++|.++.
T Consensus 17 ~L~~i~gkpmI~~v~~~a~~s--~~~~~viVaTd~~~I~~~~~~~~~~~i 64 (197)
T pfam02348 17 NLLKLGGKPLIARVIEAALQS--KLFDKVVVATDSEEIADIAEKFGGGVV 64 (197)
T ss_pred CCHHHCCCCHHHHHHHHHHHC--CCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 203529906899999999975--898728995483014420123233135
No 143
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=27.35 E-value=50 Score=14.72 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=10.3
Q ss_pred CCCCEEEEECCC--CCCCHHHHHH
Q ss_conf 788889982079--8689899999
Q gi|254781054|r 175 DGGNYIVDAFFG--FIPDPQIISG 196 (231)
Q Consensus 175 DnGN~IlD~~~~--~i~dp~~le~ 196 (231)
+|+-.|.|..-. ..-|++.++.
T Consensus 86 ~~~~~~~d~~~~~p~~~~~e~~~~ 109 (703)
T TIGR01846 86 ANGVLIYDPEEDKPRVLDREVLEA 109 (703)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 573799807878865127788998
No 144
>KOG0346 consensus
Probab=27.20 E-value=50 Score=14.75 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=46.6
Q ss_pred EECCCHHHHHHHHHHHHHHHCCC---------EEEEEECHHHHHHHHHHCCCCCC-CC-CCCCEEEEEECCHHCCCCCCE
Q ss_conf 88791789999999999873287---------04896188999999873157865-51-008800798633000476605
Q gi|254781054|r 25 GMGTGSTAKEFMILLADKIANGF---------RVQVIPSSRNTENFCKIHHIPLH-SP-EDVSSVDLSIDGFDEIDSRLR 93 (231)
Q Consensus 25 GlGtGSTv~~~i~~L~~~~~~~~---------~i~~v~tS~~t~~~a~~~gi~~~-~l-~~~~~iDi~iDGaDevd~~l~ 93 (231)
--|||-|..|+|..|-..++... -+..|||-.-.++.-... -.++ .. .++.-++++=|--|++....-
T Consensus 64 rTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~vi-ekL~~~c~k~lr~~nl~s~~sdsv~~~~L 142 (569)
T KOG0346 64 RTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVI-EKLVEYCSKDLRAINLASSMSDSVNSVAL 142 (569)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 26887137889999999997640364324630699925099999999999-99999878765554210331167778887
Q ss_pred -----EEECCCHHH---HHHHHHHHHHCCEEEEEEHHHCC
Q ss_conf -----883165777---77879986102269996230351
Q gi|254781054|r 94 -----LIKGYGGAL---LREKIIAHAASRFIVIGDESKRV 125 (231)
Q Consensus 94 -----lIKGgGgAl---~rEKiva~~a~~~I~i~D~sK~v 125 (231)
.+-+--|.+ +.-+++++.-.--+.++||--++
T Consensus 143 ~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLl 182 (569)
T KOG0346 143 MDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLL 182 (569)
T ss_pred CCCCCEEEECHHHHHHHHHHCCCHHHHHEEEEEECHHHHH
T ss_conf 0599758717188999986063021201025785035666
No 145
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=26.92 E-value=51 Score=14.68 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECC
Q ss_conf 99789988791789999999999873287048961889999998731578655100880079863300047660588316
Q gi|254781054|r 19 VDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGY 98 (231)
Q Consensus 19 ~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGg 98 (231)
+.-.+||.|.|+|.+.+.+.+. -..++.|---.+--.+|+++ +|. ..-|+| ||..+++-+-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-----ve~i~~VEID~~Vi~~ar~~-l~~-----------~~~~~~--dpRv~i~i~D 138 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-----VERITMVEIDPAVIELARKY-LPE-----------PSGGAD--DPRVEIIIDD 138 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCCC-----CCEEEEEECCHHHHHHHHHH-CCC-----------CCCCCC--CCCEEEEECC
T ss_conf 7699988976699999983688-----43379997088999999986-667-----------543357--9736899610
Q ss_pred CHHHHHHHHHHHHHCCEEEEEEHHHC
Q ss_conf 57777787998610226999623035
Q gi|254781054|r 99 GGALLREKIIAHAASRFIVIGDESKR 124 (231)
Q Consensus 99 GgAl~rEKiva~~a~~~I~i~D~sK~ 124 (231)
|...+++ ...+-=+||+|.+--
T Consensus 139 g~~~v~~----~~~~fDvIi~D~tdp 160 (282)
T COG0421 139 GVEFLRD----CEEKFDVIIVDSTDP 160 (282)
T ss_pred HHHHHHH----CCCCCCEEEECCCCC
T ss_conf 7999874----887677899858899
No 146
>PRK04998 hypothetical protein; Provisional
Probab=26.80 E-value=52 Score=14.66 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=45.2
Q ss_pred HHHCCCCCCCCC--CCEEEEECCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCEECCCCCEEE---EECCCCCCCHHHH
Q ss_conf 303513455788--7267872575899999986322148-985037722588636257888899---8207986898999
Q gi|254781054|r 121 ESKRVDFLGRGM--LPIEIDQFGVNKTLSALKEVASCFG-LNEELRLRRNGSGLFVSDGGNYIV---DAFFGFIPDPQII 194 (231)
Q Consensus 121 ~sK~v~~Lg~~p--lPVEV~p~~~~~v~~~l~~~~~~~G-~~~~lR~~~~~~gp~iTDnGN~Il---D~~~~~i~dp~~l 194 (231)
.+|+-+ |=.|| .|+-|+-.+...-...+.+++..+- +....+.+. +-+|||+= -+.-..-+....+
T Consensus 3 ~~~~d~-LieFPC~ypiKVmG~~~~~f~~~V~~iv~~h~p~d~~~~~r~-------SskG~Y~Svtv~i~a~s~~QL~~i 74 (88)
T PRK04998 3 KTKLDE-LLEFPCSFTFKVMGLARPELVDQVVEVVQRHAPGDYTPTVKP-------SSKGNYHSVSITITATSIEQVETL 74 (88)
T ss_pred CCCHHH-HEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCEEEEEEEEEECCHHHHHHH
T ss_conf 544264-264789981899972870188999999998778877841425-------889837999999998799999999
Q ss_pred HHHHHCCCCEE
Q ss_conf 99962799686
Q gi|254781054|r 195 SGELCNIPGVI 205 (231)
Q Consensus 195 e~~L~~IpGVV 205 (231)
-..|..+|+|-
T Consensus 75 Y~~L~~~~~Vk 85 (88)
T PRK04998 75 YEELAKIEGVR 85 (88)
T ss_pred HHHHHCCCCEE
T ss_conf 99973499879
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=26.50 E-value=52 Score=14.63 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECC------HHC---------------CCCCCEEEECCCH-HHHHHHHHHHHHC
Q ss_conf 99999987315786551008800798633------000---------------4766058831657-7777879986102
Q gi|254781054|r 56 RNTENFCKIHHIPLHSPEDVSSVDLSIDG------FDE---------------IDSRLRLIKGYGG-ALLREKIIAHAAS 113 (231)
Q Consensus 56 ~~t~~~a~~~gi~~~~l~~~~~iDi~iDG------aDe---------------vd~~l~lIKGgGg-Al~rEKiva~~a~ 113 (231)
.-|....++.+..-+.+-++..+-+|+|| .|| -.++.-||-|||- .-+|| ++-+..-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~nDlRLYLNG~LQFSS~DEyRYHEaLVHPaMa~~~~~~rVLILGGGDGLAlRE-VLKyp~V 163 (363)
T PRK01581 85 EHTNLFAEQSNYQNINLLQVSDIRLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALRE-VLKYETV 163 (363)
T ss_pred CCHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH-HHCCCCC
T ss_conf 421255554145530116652058997486530400676777765326653178877389980764399999-8717985
Q ss_pred CEEEEEEHHHCCCCCC
Q ss_conf 2699962303513455
Q gi|254781054|r 114 RFIVIGDESKRVDFLG 129 (231)
Q Consensus 114 ~~I~i~D~sK~v~~Lg 129 (231)
+-|.+||=..-+-.|.
T Consensus 164 e~VTLVDLDP~mt~La 179 (363)
T PRK01581 164 LHVDLVDLDGSMIDMA 179 (363)
T ss_pred CEEEEEECCHHHHHHH
T ss_conf 6278995699999987
No 148
>PRK08904 consensus
Probab=26.42 E-value=52 Score=14.62 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
+++.||.||=.|..-+-+++ ..|.+..+.|. +......|.+.++|.++
T Consensus 60 p~~~vGaGTVl~~e~~~~a~----~aGA~FiVSP~~~~~v~~~a~~~~i~~iP 108 (207)
T PRK08904 60 PNAIVGAGTVTNPEQLKAVE----DAGAVFAISPGLHESLAKAGHNSGIPLIP 108 (207)
T ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 98768553136899999999----84999998489989999999983997657
No 149
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=26.38 E-value=53 Score=14.61 Aligned_cols=189 Identities=23% Similarity=0.289 Sum_probs=91.8
Q ss_pred HHHHHHHHH------HCCCCCEEEECCCHHHHHHHHHHHHHHH-CCC----EEEEEECHHHHHHHHH-------------
Q ss_conf 999999998------3899789988791789999999999873-287----0489618899999987-------------
Q gi|254781054|r 8 RNAARRAIQ------YVVDGMTLGMGTGSTAKEFMILLADKIA-NGF----RVQVIPSSRNTENFCK------------- 63 (231)
Q Consensus 8 ~~~a~~A~~------~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~----~i~~v~tS~~t~~~a~------------- 63 (231)
-+.|++|.+ |.|||-.+==|||=.+-...+.|.|++. ++- -+-+++.+...-.+.-
T Consensus 234 LlIA~~~~~VI~aSGYfKdGFs~QtGtGGAaLAVtrfL~e~M~~~NikA~fGLGGIt~~~V~LhEeGLi~~L~DvQ~FD~ 313 (496)
T TIGR01584 234 LLIAKKAADVIVASGYFKDGFSLQTGTGGAALAVTRFLKEKMIEKNIKASFGLGGITKQMVDLHEEGLIDKLFDVQSFDL 313 (496)
T ss_pred HHHHHHHHHEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 88864230002226831377156536313799999988898886095076416771367898875234664423357427
Q ss_pred ----H-----CCCCCCC-----C----CCCCEEEEEECCHHCCCCCCEE--EEC-------CCHHHHHHHHHHHHHCCEE
Q ss_conf ----3-----1578655-----1----0088007986330004766058--831-------6577777879986102269
Q gi|254781054|r 64 ----I-----HHIPLHS-----P----EDVSSVDLSIDGFDEIDSRLRL--IKG-------YGGALLREKIIAHAASRFI 116 (231)
Q Consensus 64 ----~-----~gi~~~~-----l----~~~~~iDi~iDGaDevd~~l~l--IKG-------gGgAl~rEKiva~~a~~~I 116 (231)
+ ..+.+.. + -.+++||+.|=.|=|||.+||. +=| ==|=|-- -|..|+=-|
T Consensus 314 ~A~~S~~~N~~h~Ei~As~YAnP~~kGa~v~~Ld~ViLSALEiD~~FNVNV~tgSDG~IrgA~GGH~D---TAA~Ak~~i 390 (496)
T TIGR01584 314 KAVESIAKNPKHVEIDASLYANPANKGAIVNKLDVVILSALEIDKKFNVNVMTGSDGVIRGASGGHQD---TAAGAKLSI 390 (496)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEECCCCCCCC---CCHHEEEEE
T ss_conf 89999850898167821123688846852014756787400015567622770688737257477621---001008766
Q ss_pred EEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCC------
Q ss_conf 99623035134557887267872575899999986322148985037722588636257888899820798689------
Q gi|254781054|r 117 VIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPD------ 190 (231)
Q Consensus 117 ~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~d------ 190 (231)
+++ .|=|.=+|+=| ++ ....+-.+++=| -.+||.|=-|=| .+++-+|
T Consensus 391 I~A-------PLvRGRIptvV------------~~------V~TviTPGe~vD-vlvTd~GvavNd-klpkr~dL~e~L~ 443 (496)
T TIGR01584 391 IVA-------PLVRGRIPTVV------------EK------VTTVITPGESVD-VLVTDIGVAVND-KLPKRKDLIEKLS 443 (496)
T ss_pred EEC-------CHHHCCCCEEE------------CC------CEEEECCCCCEE-EEECCCCEEECC-CCCCCHHHHHHHC
T ss_conf 643-------32307756575------------79------606984888433-898142179738-8898743688741
Q ss_pred ---------HHHHHHHHHCCCCEEECCEECCCCCEEEEECCCCEEE
Q ss_conf ---------8999999627996866480247677899977998499
Q gi|254781054|r 191 ---------PQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECL 227 (231)
Q Consensus 191 ---------p~~le~~L~~IpGVVe~GlF~~~~d~viv~~~dG~~~ 227 (231)
.++|.+.=.++.|==|-==|.+.. ..+|-|.||++.
T Consensus 444 ~~~~ip~~tIEeL~e~A~~~tGkP~pieFtd~v-VavveYRDGS~i 488 (496)
T TIGR01584 444 SKKGIPLYTIEELKEKAEEITGKPEPIEFTDKV-VAVVEYRDGSII 488 (496)
T ss_pred CCCCCCEECHHHHHHHHHHHCCCCCCCEECCEE-EEEEEECCCCEE
T ss_conf 679882443899999999727898850132737-999983587687
No 150
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=26.35 E-value=53 Score=14.61 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=41.8
Q ss_pred CCEEEEEECCHHCCCCCCEEEECC--C----HHHHHHHHHHHHHCCEEEEEEHHHCCCCCC---CCCCCEEEEECCHHHH
Q ss_conf 880079863300047660588316--5----777778799861022699962303513455---7887267872575899
Q gi|254781054|r 75 VSSVDLSIDGFDEIDSRLRLIKGY--G----GALLREKIIAHAASRFIVIGDESKRVDFLG---RGMLPIEIDQFGVNKT 145 (231)
Q Consensus 75 ~~~iDi~iDGaDevd~~l~lIKGg--G----gAl~rEKiva~~a~~~I~i~D~sK~v~~Lg---~~plPVEV~p~~~~~v 145 (231)
-+++=+-+||-||+..+...-..- - ..+++.|+ ...-.++|.--.--+..+. ..+.-+||..|..+.+
T Consensus 78 ~~k~L~ilDGlDE~~~~~~~~~~~~~~~~~l~~ll~~~~---lp~~~vliTsRp~~~~~l~~~~~~~~~~ei~GFs~~~~ 154 (165)
T pfam05729 78 PERVLLILDGLDELASDLGQLDGPLPVLTLLSSLLRKKL---LPGASLLLTSRPDALRDLRRGLEEPRYLEVLGFSEEDR 154 (165)
T ss_pred CCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEEEECCCHHHHHHHHCCCCCEEEECCCCHHHH
T ss_conf 772899964845514443564445779999999984152---78864999968037988577648871899889999999
Q ss_pred HHHHHHHHH
Q ss_conf 999986322
Q gi|254781054|r 146 LSALKEVAS 154 (231)
Q Consensus 146 ~~~l~~~~~ 154 (231)
...+++.+.
T Consensus 155 ~~yi~~~F~ 163 (165)
T pfam05729 155 KQYVRKYFS 163 (165)
T ss_pred HHHHHHHCC
T ss_conf 999998679
No 151
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.94 E-value=54 Score=14.56 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
+++.||.||=.|..-+-+++ ..|.+..+.|. +...-..|.++++|.++
T Consensus 63 p~~~iGaGTV~~~e~~~~a~----~aGA~FiVSP~~~~~vi~~a~~~~i~~iP 111 (210)
T PRK07455 63 PECIIGTGTLLTLEDLEEAI----AAGAQFCFTPHVDLELIQAAVAADIPIIP 111 (210)
T ss_pred CCCEEEEEECCCHHHHHHHH----HCCCCEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 99689888187899999999----86999998688889999999982997658
No 152
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=25.90 E-value=54 Score=14.56 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=50.4
Q ss_pred CCEEEEEEHHHCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCH
Q ss_conf 2269996230351345578872678725-758999999863221489850377225886362578888998207986898
Q gi|254781054|r 113 SRFIVIGDESKRVDFLGRGMLPIEIDQF-GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDP 191 (231)
Q Consensus 113 ~~~I~i~D~sK~v~~Lg~~plPVEV~p~-~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp 191 (231)
+.|-.++|..|+--.+-. .+=|.+-+. .+..+.+.|.+ -|++... ..+|-..+|++-+...+..+.
T Consensus 54 ~~~~~~id~~~lG~~~~a-~i~i~~~~~~~~~~~~~~l~~-------~peV~~~-----~~vtG~~D~~v~v~~~~~~~l 120 (153)
T PRK11179 54 TGARIDVNPKQLGYDVCC-FIGIILKSAKDYPSALAKLES-------LDEVVEA-----YYTTGHYSIFIKVMCRSIDAL 120 (153)
T ss_pred EEEEEEECHHHHCCCEEE-EEEEEECCCCCHHHHHHHHHC-------CCHHEEE-----EEECCCCCEEEEEEECCHHHH
T ss_conf 899999798993998799-999998478899999999748-------9521186-----264588889999998999999
Q ss_pred HH-HHHHHHCCCCEEECCEE
Q ss_conf 99-99996279968664802
Q gi|254781054|r 192 QI-ISGELCNIPGVIEHGLF 210 (231)
Q Consensus 192 ~~-le~~L~~IpGVVe~GlF 210 (231)
.. +..+|.++|||-.+-=|
T Consensus 121 ~~~l~~~i~~i~gV~~t~T~ 140 (153)
T PRK11179 121 QHVLINKIQTIDEIQSTETL 140 (153)
T ss_pred HHHHHHHHHCCCCEEEEEEE
T ss_conf 99999985379998589999
No 153
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=25.86 E-value=26 Score=16.55 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCC-EEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCC
Q ss_conf 5899999986322148985037722588636257888-89982079868989999996279968664802476
Q gi|254781054|r 142 VNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGN-YIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINM 213 (231)
Q Consensus 142 ~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN-~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~ 213 (231)
.....+...++.+.+|++.-.|.- .+++.+|+ |++.+. .+||.=.+++|..+
T Consensus 132 ~~~i~~~A~~~~~aLg~~g~~rvD-----~~~d~~g~~~vlEvN---------------~~Pg~~~~s~~~~~ 184 (201)
T pfam07478 132 EEQIQELALKAYKALGCRGLARID-----FFLTEDGEIYLNEVN---------------TMPGFTSISLYPRM 184 (201)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEE-----EEECCCCCEEEEEEC---------------CCCCCCCCCHHHHH
T ss_conf 999999999999984887605799-----999689949999954---------------97999867699999
No 154
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=25.11 E-value=55 Score=14.47 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=35.5
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCEECCCCCEEEEECC--CCCCCHHHHHHHHHCCCCEEEC
Q ss_conf 7872575899999986322148985-0377225886362578888998207--9868989999996279968664
Q gi|254781054|r 136 EIDQFGVNKTLSALKEVASCFGLNE-ELRLRRNGSGLFVSDGGNYIVDAFF--GFIPDPQIISGELCNIPGVIEH 207 (231)
Q Consensus 136 EV~p~~~~~v~~~l~~~~~~~G~~~-~lR~~~~~~gp~iTDnGN~IlD~~~--~~i~dp~~le~~L~~IpGVVe~ 207 (231)
+|.-+-.+-.+..+-..++..|.+- .+.... .++|.+.++..+ .+..+...+-.+|+++|||.+.
T Consensus 2 ~I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~-------~~~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~~V 69 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRT-------DDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDV 69 (71)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-------CCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99998377879999999998799679999997-------589869999999988999999999998779991598
No 155
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=25.05 E-value=56 Score=14.46 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCCCCCCCC---CEEEEEECCHHC---CCCCCEEEECCCHHHHHHHHHHHHHCCE
Q ss_conf 999987315786551008---800798633000---4766058831657777787998610226
Q gi|254781054|r 58 TENFCKIHHIPLHSPEDV---SSVDLSIDGFDE---IDSRLRLIKGYGGALLREKIIAHAASRF 115 (231)
Q Consensus 58 t~~~a~~~gi~~~~l~~~---~~iDi~iDGaDe---vd~~l~lIKGgGgAl~rEKiva~~a~~~ 115 (231)
....+.+.||...-++++ +.++..-.|+.+ .++|.-.==|||-++=-=|.++..+..-
T Consensus 49 v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~~~~ 112 (377)
T COG1454 49 VLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLAENP 112 (377)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9999874498289956889999888999999999816999899977930878999999996087
No 156
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804 The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=24.78 E-value=52 Score=14.64 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=18.0
Q ss_pred CCCCCEECCCCCEEEEECCC-CCCCHHHHH
Q ss_conf 58863625788889982079-868989999
Q gi|254781054|r 167 NGSGLFVSDGGNYIVDAFFG-FIPDPQIIS 195 (231)
Q Consensus 167 ~~~gp~iTDnGN~IlD~~~~-~i~dp~~le 195 (231)
.-|+|+.||.|-|=|-.+.+ .+.|++-.+
T Consensus 78 ~~D~P~MTDSGSyQL~~YGD~E~~N~EIie 107 (658)
T TIGR00432 78 DFDGPVMTDSGSYQLSVYGDVEVKNAEIIE 107 (658)
T ss_pred CCCCCEEECCCCEEECCCCCEEEECCHHHH
T ss_conf 078864305763110111556630604565
No 157
>pfam01776 Ribosomal_L22e Ribosomal L22e protein family.
Probab=24.62 E-value=57 Score=14.41 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=8.3
Q ss_pred EEEEECCC---CCCCHHHHHHHHH
Q ss_conf 89982079---8689899999962
Q gi|254781054|r 179 YIVDAFFG---FIPDPQIISGELC 199 (231)
Q Consensus 179 ~IlD~~~~---~i~dp~~le~~L~ 199 (231)
|.+||..| .|.|+..+|..|.
T Consensus 8 F~iDCt~PveD~I~d~a~fekfL~ 31 (112)
T pfam01776 8 FTIDCSHPVEDGIFDVANFEKFLH 31 (112)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 999728815477144899999988
No 158
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=24.60 E-value=57 Score=14.41 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEE-EEEEC-----HHH-----HHHHHHHCCCC
Q ss_conf 98789999999999983899789988791789999999999873-28704-89618-----899-----99998731578
Q gi|254781054|r 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRV-QVIPS-----SRN-----TENFCKIHHIP 68 (231)
Q Consensus 1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i-~~v~t-----S~~-----t~~~a~~~gi~ 68 (231)
|+.+| ++.+.+.+++.+.....|=.|+|++....++ +++..+ .|.+. .++|+ |.+ -+..+...++|
T Consensus 50 Ls~eE-r~~v~~~~~~~~~g~~~vi~g~g~~t~~~i~-la~~a~~~Gadav~v~pPy~~~~~~~~l~~~~~~ia~a~~lp 127 (289)
T cd00951 50 LTPDE-YAQVVRAAVEETAGRVPVLAGAGYGTATAIA-YAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLG 127 (289)
T ss_pred CCHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHH-HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89999-9999999999818985174067631999999-999999759999997698888999999999999999846998
Q ss_pred CCCCCCCCEEEEEECCHHCCC---CCCEEEECCCH-HHHHHHHHHHHHCCEEEEE
Q ss_conf 655100880079863300047---66058831657-7777879986102269996
Q gi|254781054|r 69 LHSPEDVSSVDLSIDGFDEID---SRLRLIKGYGG-ALLREKIIAHAASRFIVIG 119 (231)
Q Consensus 69 ~~~l~~~~~iDi~iDGaDevd---~~l~lIKGgGg-Al~rEKiva~~a~~~I~i~ 119 (231)
+.-.+ ....++..+=..++. |+...||=.-+ .....++++...++|.++.
T Consensus 128 i~lYn-~~~~~~~~~~l~~L~~~~p~i~giK~s~~d~~~~~~~~~~~~~~~~~~~ 181 (289)
T cd00951 128 VIVYN-RANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLG 181 (289)
T ss_pred EEECC-CCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 66148-8776778999999998368789999788899999999997599828985
No 159
>KOG0886 consensus
Probab=24.47 E-value=29 Score=16.20 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCC--CCCCHHHHHHHHH
Q ss_conf 8726787257589999998632214898503772258863625788889982079--8689899999962
Q gi|254781054|r 132 MLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFG--FIPDPQIISGELC 199 (231)
Q Consensus 132 plPVEV~p~~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~--~i~dp~~le~~L~ 199 (231)
---|||+|.+...++++|++- .|-|+.. --+..|||+-+|-... .+.-|..+..+|.
T Consensus 70 ~A~i~VvpSasaLiIkaLKEP---------pRDRKk~--knikh~Gni~~deiv~iar~mr~rS~a~~l~ 128 (167)
T KOG0886 70 QAQIEVVPSASALIIKALKEP---------PRDRKKQ--KNIKHSGNITFDEIVEIARIMRPRSLARELS 128 (167)
T ss_pred CCCEEECCCHHHHHHHHHCCC---------CCHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 130587540788999973179---------7004442--2434367531788988998760276664320
No 160
>pfam02410 DUF143 Domain of unknown function DUF143. This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 100 amino acids long.
Probab=24.32 E-value=57 Score=14.38 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCCCCCHHHHH
Q ss_conf 999998632214898503772258863625788889982079868989999
Q gi|254781054|r 145 TLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIIS 195 (231)
Q Consensus 145 v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~i~dp~~le 195 (231)
....+.+.++..|..+.-..+....+..+-|-||+++-++.++.-+-+.||
T Consensus 46 i~~~i~~~~k~~~~~~~~~EG~~~~~WiliD~g~vvVHif~~e~R~~Y~LE 96 (99)
T pfam02410 46 IADNVEEELKEAGLKPLGVEGLDEGDWVLLDYGDVVVHIFTPEAREFYDLE 96 (99)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCHH
T ss_conf 999999999985998752158456999999779589990787776564775
No 161
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=23.67 E-value=27 Score=16.45 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHH-HCCCEEEEEECHHHHH--HHHH---------HCCCCCCCCCCC----CEEEEEECCHHCCC--CC
Q ss_conf 78999999999987-3287048961889999--9987---------315786551008----80079863300047--66
Q gi|254781054|r 30 STAKEFMILLADKI-ANGFRVQVIPSSRNTE--NFCK---------IHHIPLHSPEDV----SSVDLSIDGFDEID--SR 91 (231)
Q Consensus 30 STv~~~i~~L~~~~-~~~~~i~~v~tS~~t~--~~a~---------~~gi~~~~l~~~----~~iDi~iDGaDevd--~~ 91 (231)
.|-.- |..|.+.- ..++...||.+++... ..++ -.|+|.-....- .-....=+|||||| .+
T Consensus 21 ~T~~~-I~~l~~eA~~~~f~avCV~P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdEiDmVin 99 (228)
T COG0274 21 ATEED-IARLCAEAKEYGFAAVCVNPSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAIENGADEIDMVIN 99 (228)
T ss_pred CCHHH-HHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 89999-99999998853861899771359999998446887489986279899873888999999999849970256400
Q ss_pred CEEEECCCHHHHHHHHHH
Q ss_conf 058831657777787998
Q gi|254781054|r 92 LRLIKGYGGALLREKIIA 109 (231)
Q Consensus 92 l~lIKGgGgAl~rEKiva 109 (231)
...+|+|.-..+++-|-+
T Consensus 100 ig~~k~g~~~~V~~eI~~ 117 (228)
T COG0274 100 IGALKSGNWEAVEREIRA 117 (228)
T ss_pred HHHHHCCCHHHHHHHHHH
T ss_conf 899836988999999999
No 162
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein; InterPro: IPR013366 Salmonella typhimurium is capable of growth on ethanolamine as a sole source of carbon nitrogen and energy . During growth on this compound the cells form a multimolecular structure known as a metabolosome, which is similar to the carboxysome used by some photosynthetic bacteria to fix CO2, and is thought to contain the enzymes needed to metabolise this compound to acetyl-CoA. The metabolosome is not directly involved in the biochemistry of ethanolamine utilization - instead its role is thought to be to concentrate the enzymes involved in this process, while also protecting the cell from the build-up of toxic intermediates . The genes involved in growth on ethanolamine are encoded in a 17-gene operon known as the ethanolamine utilization (eut) operon. EutJ shows similarity to chaperonins and may play a role in assembly of the metabolosme , though it is not necessary for growth on this compound..
Probab=23.50 E-value=57 Score=14.40 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=8.4
Q ss_pred HHHHCCCCCEEEECCCHH
Q ss_conf 998389978998879178
Q gi|254781054|r 14 AIQYVVDGMTLGMGTGST 31 (231)
Q Consensus 14 A~~~v~~gmviGlGtGST 31 (231)
++=.++||-||=+|.|+|
T Consensus 103 ~vL~i~nG~VVDvGGGTT 120 (240)
T TIGR02529 103 AVLQIKNGAVVDVGGGTT 120 (240)
T ss_pred HHHCCCCCEEEEECCCCE
T ss_conf 872885727998478803
No 163
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=23.25 E-value=60 Score=14.25 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=10.4
Q ss_pred HHCCCCCCCCCCCCEEEEEECCHHCC
Q ss_conf 73157865510088007986330004
Q gi|254781054|r 63 KIHHIPLHSPEDVSSVDLSIDGFDEI 88 (231)
Q Consensus 63 ~~~gi~~~~l~~~~~iDi~iDGaDev 88 (231)
++.|||++.+=.+-.|-+++ ||..|
T Consensus 363 ERaG~PvV~~C~~~Pia~TV-GAN~I 387 (433)
T TIGR01918 363 ERAGIPVVHMCTVIPIALTV-GANRI 387 (433)
T ss_pred HHCCCCEEEECCEEEECCCC-CCCCC
T ss_conf 31698747640201000013-64423
No 164
>pfam12007 DUF3501 Protein of unknown function (DUF3501). This family of proteins is functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved.
Probab=23.15 E-value=60 Score=14.24 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC-CCCCE-EEEEECCCCCEECCCCCE
Q ss_conf 7778799861022699962303513455788726787257589999998632214-89850-377225886362578888
Q gi|254781054|r 102 LLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCF-GLNEE-LRLRRNGSGLFVSDGGNY 179 (231)
Q Consensus 102 l~rEKiva~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~~~~~v~~~l~~~~~~~-G~~~~-lR~~~~~~gp~iTDnGN~ 179 (231)
-+|..+++....|.|-+.+.-- + +=.....+.-++++|+..- ++... +..--.-..|.+.|.+|+
T Consensus 19 ~~r~~ii~~Kk~Rrv~lG~~~t---------~----~FEn~~T~~yQIQEMlriEki~~~~~I~eEl~aYnpLiP~g~~L 85 (191)
T pfam12007 19 EFRARVIAHKKRRRVELGDHLT---------L----LFENEDTVRYQIQEMLRIEKIFDEEDIQHELDAYNPLVPDGGNL 85 (191)
T ss_pred HHHHHHHHHHHCCEEEECCCEE---------E----EEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf 9999999875365872079579---------9----99568999999999999981687889999999850257999807
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCC
Q ss_conf 998207986898999999627996866480247677
Q gi|254781054|r 180 IVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVD 215 (231)
Q Consensus 180 IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d 215 (231)
..-..+ .++||.+-...|..+-|+ |..+|....+
T Consensus 86 ~ATlmi-Ei~d~~~r~~~L~~l~Gi-E~~v~l~v~~ 119 (191)
T pfam12007 86 KATLMI-EIPDEAERRRKLRELKGI-EDSVFLEVGG 119 (191)
T ss_pred EEEEEE-EECCHHHHHHHHHHHCCC-CEEEEEEECC
T ss_conf 899999-808889999999884792-4038999999
No 165
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.11 E-value=61 Score=14.23 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHH--HCCCCCC-CCCCC-EEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 7660588316577777879986102269996230--3513455-78872-67872575899999986322148985
Q gi|254781054|r 89 DSRLRLIKGYGGALLREKIIAHAASRFIVIGDES--KRVDFLG-RGMLP-IEIDQFGVNKTLSALKEVASCFGLNE 160 (231)
Q Consensus 89 d~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~s--K~v~~Lg-~~plP-VEV~p~~~~~v~~~l~~~~~~~G~~~ 160 (231)
.-+.|.+=.+|+. +.|=--+..|+-.+++..++ +..+.|. +|-+| +++.|++...|.+.|+++...+|...
T Consensus 192 Gi~v~~~~p~~~t-~~ei~~~~~A~lnvv~~~~~~~~~a~~Le~~~giP~~~~~PiGi~~T~~fL~~i~~~~g~e~ 266 (430)
T cd01981 192 GIEVNVVIPEGAS-VDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIGVVATARFLREIQELLGIQI 266 (430)
T ss_pred CCEEEEEECCCCC-HHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9918998189999-99998641266778604989999999999985987360476678999999999999958986
No 166
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=22.91 E-value=61 Score=14.21 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=5.4
Q ss_pred CEEEECCCHHHHH
Q ss_conf 8998879178999
Q gi|254781054|r 22 MTLGMGTGSTAKE 34 (231)
Q Consensus 22 mviGlGtGSTv~~ 34 (231)
++.|-.||+=...
T Consensus 35 lI~GTSTGgiiAl 47 (312)
T cd07212 35 WIAGTSTGGILAL 47 (312)
T ss_pred EEEECCHHHHHHH
T ss_conf 7887169999999
No 167
>KOG0523 consensus
Probab=22.69 E-value=62 Score=14.18 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCC-CCCCCCCCCEEEEEECCHHC
Q ss_conf 8999999873157-86551008800798633000
Q gi|254781054|r 55 SRNTENFCKIHHI-PLHSPEDVSSVDLSIDGFDE 87 (231)
Q Consensus 55 S~~t~~~a~~~gi-~~~~l~~~~~iDi~iDGaDe 87 (231)
+..+...|.-+.+ +++.+.+..+ +.+||+-.
T Consensus 158 ~~Ea~s~Ag~l~ldnLVai~D~n~--is~~g~t~ 189 (632)
T KOG0523 158 VWEAMSLAGHLKLDNLVAIYDNNK--ISIDGATS 189 (632)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCC--CCCCCCCC
T ss_conf 888876640225487899972664--45789865
No 168
>pfam03862 SpoVA SpoVA protein. Members of this family are all transcribed from the spoVA operon. These proteins are poorly characterized, but are thought to be involved in dipicolinic acid transport into the developing forespore during sporulation.
Probab=22.01 E-value=64 Score=14.09 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCCCEEEECCC
Q ss_conf 99999983899789988791
Q gi|254781054|r 10 AARRAIQYVVDGMTLGMGTG 29 (231)
Q Consensus 10 ~a~~A~~~v~~gmviGlGtG 29 (231)
.+..|+|+.+.+.++|+|+|
T Consensus 77 l~~~aie~~~eg~v~Gv~~~ 96 (119)
T pfam03862 77 LASGAIEFKDEGGVLGVGTG 96 (119)
T ss_pred HHHHHHHHHHCCCEEEECCC
T ss_conf 99999998760656776146
No 169
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=21.65 E-value=65 Score=14.05 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCH-HCCC---CCCEEEECCCHHHHHHHHH
Q ss_conf 9999999987328704896188999999873157865510088007986330-0047---6605883165777778799
Q gi|254781054|r 34 EFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGF-DEID---SRLRLIKGYGGALLREKII 108 (231)
Q Consensus 34 ~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGa-Devd---~~l~lIKGgGgAl~rEKiv 108 (231)
-+|+.||+.++....++.=|++..+...|.+.=..+++ .+..--|++||.- -||- ..=-++-|.+|..+||=..
T Consensus 49 dlik~lAk~lrKRI~iR~dPsvl~~~e~A~~~I~eivP-~ea~i~~i~Fd~~tGEViIea~KPGlvigk~g~~~reI~~ 126 (637)
T COG1782 49 DLIKDLAKDLRKRIIIRPDPSVLKPPEEARKIILEIVP-EEAGITDIYFDDDTGEVIIEAKKPGLVIGKGGSTLREITA 126 (637)
T ss_pred HHHHHHHHHHHHCEEECCCCHHCCCHHHHHHHHHHHCC-CCCCCEEEEECCCCCEEEEEECCCCEEEECCCHHHHHHHH
T ss_conf 69999999986326843690221898999999997486-2137036786188744999955895588247217999999
No 170
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=21.48 E-value=65 Score=14.03 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECC-CCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCEECCCCCE
Q ss_conf 5899999986322148985037722588636257-88889982079868989999996279968664802476778
Q gi|254781054|r 142 VNKTLSALKEVASCFGLNEELRLRRNGSGLFVSD-GGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDC 216 (231)
Q Consensus 142 ~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTD-nGN~IlD~~~~~i~dp~~le~~L~~IpGVVe~GlF~~~~d~ 216 (231)
.+.......+.++.+|+..-.|.- +|++| .||+.+ .++|.+||-..+.+|..++..
T Consensus 244 ~~~i~~lA~~a~~alg~~g~~rvD-----f~~~~~~g~~~l--------------~EvNt~PG~t~~sl~P~~~~~ 300 (317)
T COG1181 244 HEEIKELALRAYKALGCLGLARVD-----FFVDDDEGEFVL--------------LEVNTNPGMTAMSLFPKAAAA 300 (317)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE-----EEEECCCCCEEE--------------EEEECCCCCCCCCCCHHHHHH
T ss_conf 999999999999860888758887-----999878998999--------------987089987653537677987
No 171
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=21.38 E-value=66 Score=14.01 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=18.4
Q ss_pred EEEEEECHHHHHHHHHHCCCCCCCC
Q ss_conf 0489618899999987315786551
Q gi|254781054|r 48 RVQVIPSSRNTENFCKIHHIPLHSP 72 (231)
Q Consensus 48 ~i~~v~tS~~t~~~a~~~gi~~~~l 72 (231)
++.+.+.|......|+++|+++.-.
T Consensus 45 ~v~VaTdd~eI~~~~k~~g~~~i~t 69 (238)
T PRK13368 45 EVYVATDDQRIEDAVEAFGGKVVMT 69 (238)
T ss_pred EEEEECCCHHHHHHHHCCCCEEEEC
T ss_conf 2999568424877750046327851
No 172
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=21.18 E-value=43 Score=15.13 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCC
Q ss_conf 1789999999999873287048961889999998731578655100
Q gi|254781054|r 29 GSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPED 74 (231)
Q Consensus 29 GSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~ 74 (231)
|.=|+.||+..-..-+....+.+|+||-++++.=.+..+--+++-+
T Consensus 191 GREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAE 236 (430)
T TIGR02546 191 GREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAE 236 (430)
T ss_pred CHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 6047888752078305242489960798667999999878879999
No 173
>PRK07079 hypothetical protein; Provisional
Probab=21.06 E-value=62 Score=14.17 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=8.1
Q ss_pred EEECCCCCCCHHHHHHHH
Q ss_conf 982079868989999996
Q gi|254781054|r 181 VDAFFGFIPDPQIISGEL 198 (231)
Q Consensus 181 lD~~~~~i~dp~~le~~L 198 (231)
+|++..+-+||.++...|
T Consensus 329 is~RLVP~qdp~~i~~~l 346 (468)
T PRK07079 329 CQLRFVVGTDWQNLIAHL 346 (468)
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999967999999999999
No 174
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=20.80 E-value=67 Score=13.94 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=45.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCC-CCCCCCCCE---EEEEECCHHCC-CCCCEEE
Q ss_conf 789988791789999999999873287048961889999998731578-655100880---07986330004-7660588
Q gi|254781054|r 21 GMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIP-LHSPEDVSS---VDLSIDGFDEI-DSRLRLI 95 (231)
Q Consensus 21 gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~-~~~l~~~~~---iDi~iDGaDev-d~~l~lI 95 (231)
...+=.=|-.-|.++...+.. .....+..++-...|+..+.++|+. +..+...++ +.+ . .-++ ...--.+
T Consensus 68 ~d~vIFVS~nAV~~a~~~l~~--~~p~~~~~~aVG~~TA~~L~~~g~~~v~~P~~~dSE~LLaL--p-~~~~~~~~vlI~ 142 (264)
T PRK08811 68 APIVVFTSPAAVQAAHRLLPL--QRPARAHWLSVGEGTARALQACGIDRVVRPTRMDSEGLLAL--P-LAQAPLQAVGLI 142 (264)
T ss_pred CCEEEEECHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHCCCCCEECCCCCCHHHHHHC--H-HCCCCCCEEEEE
T ss_conf 999999858999999975421--27889859999899999999759985308999880888728--2-105889879998
Q ss_pred ECCCH-HHHHHHHHHHHHCCEEEEE
Q ss_conf 31657-7777879986102269996
Q gi|254781054|r 96 KGYGG-ALLREKIIAHAASRFIVIG 119 (231)
Q Consensus 96 KGgGg-Al~rEKiva~~a~~~I~i~ 119 (231)
||-|| -++.|.+-+.-|+--.+-+
T Consensus 143 rG~GGRe~La~~L~~rGA~V~~~~~ 167 (264)
T PRK08811 143 TAPGGRGLLAPTLEQRGARIVRADV 167 (264)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 4786789999999977985889988
No 175
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=20.62 E-value=68 Score=13.92 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEEEECCH-HCCC---CCCEEEECCCHHHHHH
Q ss_conf 999999987328704896188999999873157865510088007986330-0047---6605883165777778
Q gi|254781054|r 35 FMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGF-DEID---SRLRLIKGYGGALLRE 105 (231)
Q Consensus 35 ~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi~iDGa-Devd---~~l~lIKGgGgAl~rE 105 (231)
+|+.|++.++....++.-|++......|++. |.-+-+++.+--|++||-+ -||- ..=-++-|.+|+.+||
T Consensus 44 ~i~~~a~~~kkri~ir~d~~~~~~~~~a~~~-i~~~vp~~a~i~~~~fd~~~~ev~i~~~kpg~~~g~~g~~~~~ 117 (630)
T TIGR03675 44 LVKELAKKLRKRIVIRPDPSVLLPPEEAIEK-IKEIVPEEAGITDIYFDDVTGEVIIEAEKPGLVIGKGGSTLRE 117 (630)
T ss_pred HHHHHHHHHCCEEEECCCCHHCCCHHHHHHH-HHHHCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCHHHHH
T ss_conf 9999999860438982790331899999999-9975895358415897489727999977963676475167999
No 176
>PRK06392 homoserine dehydrogenase; Provisional
Probab=20.53 E-value=66 Score=14.01 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=21.2
Q ss_pred EEEECC-CHHHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCC
Q ss_conf 998879-1789999999999873287--0489618899999987315786
Q gi|254781054|r 23 TLGMGT-GSTAKEFMILLADKIANGF--RVQVIPSSRNTENFCKIHHIPL 69 (231)
Q Consensus 23 viGlGt-GSTv~~~i~~L~~~~~~~~--~i~~v~tS~~t~~~a~~~gi~~ 69 (231)
++|+|| |+.+...++.-.++.+.++ .+..++.|.. ......|+++
T Consensus 5 l~G~G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~--~~~~~~gid~ 52 (326)
T PRK06392 5 IIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKL--SYYNERGLDI 52 (326)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCH--HCCCCCCCCH
T ss_conf 99578899999999997499998489937999996101--0146568898
No 177
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.28 E-value=69 Score=13.87 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC-HHHHHHHHHHCCCCCCC
Q ss_conf 97899887917899999999998732870489618-89999998731578655
Q gi|254781054|r 20 DGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS-SRNTENFCKIHHIPLHS 71 (231)
Q Consensus 20 ~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t-S~~t~~~a~~~gi~~~~ 71 (231)
+++.||.||=.|..-+-+.. ..|.+..+.|. +......|.++++|.++
T Consensus 65 p~~~vGaGTV~~~e~~~~a~----~aGA~FiVSP~~~~~v~~~a~~~~i~~iP 113 (212)
T PRK05718 65 PEALIGAGTVLNPEQLAQAI----EAGAQFIVSPGLTPPLLKACQDGPIPLIP 113 (212)
T ss_pred CCCEEEEEEECCHHHHHHHH----HCCCCEEECCCCCHHHHHHHHHCCCCEEC
T ss_conf 98179653313488999999----84998998489989999999981997657
Done!