HHsearch alignment for GI: 254781054 and conserved domain: pfam01008
>pfam01008 IF-2B Initiation factor 2 subunit family. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.
Probab=97.21 E-value=0.016 Score=36.43 Aligned_cols=129 Identities=23% Similarity=0.184 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHHCCCEEEEEE--C-----HHHHHHHHHHCCCCCCCCCC-
Q ss_conf 8999999999998389978-9988791789999999999873287048961--8-----89999998731578655100-
Q gi|254781054|r 4 LQMKRNAARRAIQYVVDGM-TLGMGTGSTAKEFMILLADKIANGFRVQVIP--S-----SRNTENFCKIHHIPLHSPED- 74 (231)
Q Consensus 4 ~~~K~~~a~~A~~~v~~gm-viGlGtGSTv~~~i~~L~~~~~~~~~i~~v~--t-----S~~t~~~a~~~gi~~~~l~~- 74 (231)
T Consensus 91 ~~a~~~Ia~~a~~~I~~g~~ILT~~~S~tv~~~l~~A~~---~gk~f~V~v~EsrP~~~G~~~a~~L~~~gI~~t~i~ds 167 (281)
T pfam01008 91 EEARRKIGAIAAELIKDGDTILTHCNSGTVLGVLRAAHK---EGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDS 167 (281)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEHH
T ss_conf 999999999999774899889975682899999999998---59907999966897401389999998579996896053
Q ss_pred -----CCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHH-HHHCCEEEEEEHHHCCCCCC-CCCCCEEE
Q ss_conf -----88007986330004766058831657777787998-61022699962303513455-78872678
Q gi|254781054|r 75 -----VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIA-HAASRFIVIGDESKRVDFLG-RGMLPIEI 137 (231)
Q Consensus 75 -----~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva-~~a~~~I~i~D~sK~v~~Lg-~~plPVEV 137 (231)
T Consensus 168 a~~~~m~~vd~VivGAd~v~~nG~v~nk~GT~~iA--~~Ak~~~vPv~V~a~~~Kf~~~~~~~~~~~~e~ 235 (281)
T pfam01008 168 AVGYVMQEVDKVIVGADRILANGGIANKIGTYQLA--LLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEE 235 (281)
T ss_pred HHHHHHHHCCEEEECHHHHCCCCCEEECHHHHHHH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89998501888997554413799874412029999--998644997899866677587678877465766