HHsearch alignment of GI: 254781054 and MMDB domain: 3d3u_A_1-187
>3d3u_A (A:1-187) 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83}
Probab=96.12 E-value=0.022 Score=35.20 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCHH---HHHHHHHHHHH-HHCCCCCEEEECCCHH-HHHHHHHHHHHHHCCCEEEEEE----------------------
Q ss_conf 9878---99999999999-8389978998879178-9999999999873287048961----------------------
Q gi|254781054|r 1 MDAL---QMKRNAARRAI-QYVVDGMTLGMGTGST-AKEFMILLADKIANGFRVQVIP---------------------- 53 (231)
Q Consensus 1 M~~~---~~K~~~a~~A~-~~v~~gmviGlGtGST-v~~~i~~L~~~~~~~~~i~~v~---------------------- 53 (231)
||-. ..|..-+..|+ ++|++||.|++|.++- -..++++|.++.+...+++.+.
T Consensus 1 M~~~~~~~~K~~s~~eAv~~~i~~G~~I~~~g~~~~P~~l~~aL~~~~~~~~~l~l~~~~~~g~~~~~~~~~~~~~~~~~ 80 (187)
T 3d3u_A 1 MQWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTL 80 (187)
T ss_dssp -CCHHHHHHHBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC
T ss_pred CCHHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCEEEEC
T ss_conf 98578887458809999872698949999889867899999999986568999699986677783544057546589945
Q ss_pred --CHHHHHHHHHHCCCCCCC--C--------CCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEH
Q ss_conf --889999998731578655--1--------0088007986330004766058831657777787998610226999623
Q gi|254781054|r 54 --SSRNTENFCKIHHIPLHS--P--------EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121 (231)
Q Consensus 54 --tS~~t~~~a~~~gi~~~~--l--------~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~ 121 (231)
++...+.....-.+...+ + ...-.+|+++=.+-..|.++|+.=|+.....+ -.+.+|++.|+-+.+
T Consensus 81 ~~~~~~~r~~~~~g~~~~~p~~~~~~~~~l~~~~~~~Dvali~~s~~D~~Gn~sl~~~~~~~~--~~~~aA~~VIvevn~ 158 (187)
T 3d3u_A 81 NFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTK--AAAECAPVVVAEVNK 158 (187)
T ss_dssp --------------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTTBCBTHH--HHHHHCSEEEEEEES
T ss_pred CCCCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCHHHHH--HHHHHCCEEEECCCC
T ss_conf 778989999997699623388011599999828999619999986179896685157764799--999737807604677
Q ss_pred HHCCCCC-CCCCCCE
Q ss_conf 0351345-5788726
Q gi|254781054|r 122 SKRVDFL-GRGMLPI 135 (231)
Q Consensus 122 sK~v~~L-g~~plPV 135 (231)
.++.. |...+|+
T Consensus 159 --~vp~~~g~~~Ip~ 171 (187)
T 3d3u_A 159 --QMPFIGGENLIHI 171 (187)
T ss_dssp --SSCCCEESCEEEG
T ss_pred --CCCCCCCCCEECC
T ss_conf --7785799977316