HHsearch alignment of GI: 254781054 and MMDB domain: 3efb_A_
>3efb_A (A:) Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str}
Probab=90.69 E-value=0.46 Score=27.01 Aligned_cols=96 Identities=10% Similarity=-0.042 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEEEE-----EE----C--H-HHHHHHHHHC
Q ss_conf 78999999999998----3899789988791789999999999873-2870489-----61----8--8-9999998731
Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRVQV-----IP----S--S-RNTENFCKIH 65 (231)
Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i~~-----v~----t--S-~~t~~~a~~~ 65 (231)
.+++.+.+|+.|.+ .++++++||+++|+|...+.+.+.+..+ ...+... ++ . + .-.+.+++..
T Consensus 39 ~~~~~~~~~~~~a~~l~~~l~~~~~igis~G~t~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~ 118 (266)
T 3efb_A 39 EETQLAXXGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAKL 118 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 16899999999999999867899999990778899999971322578895899887888765667558899999999980
Q ss_pred CCCCCCC-------------------------CCCCEEEEEECCHHCCCCCCEEEECC
Q ss_conf 5786551-------------------------00880079863300047660588316
Q gi|254781054|r 66 HIPLHSP-------------------------EDVSSVDLSIDGFDEIDSRLRLIKGY 98 (231)
Q Consensus 66 gi~~~~l-------------------------~~~~~iDi~iDGaDevd~~l~lIKGg 98 (231)
+++...+ +..+.+|+++-|.=+..+...+..++
T Consensus 119 ~~~~~~~~~p~~~~~~e~~~~~~~~~~~~~~l~~~~~~DiailGiG~~gh~~~~~p~~ 176 (266)
T 3efb_A 119 KGESHLADFPALLDNPLIRNGIXQSQHFKTISAYWDNLDIALVGIGSPAIRDGANWHA 176 (266)
T ss_dssp TCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEECCBCCC---------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 8961156664247999999999858599999998744999999478787656422157